Pregenerated sensors for KLRC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033027Ensembl transcript IDs: ENSMUST00000071149.7, ENSMUST00000170148.8, ENSMUST00000203189.3
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGACTTCCAGTGCGGGTGTTTCAGATGGGGAATTTACACTTACAAAGATATGGAACCAGTGAAAGGGATTaGAGAAAGTCCTGCTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: RLPVRVFQMGNLHLQRYGTSERD*RKSCSS Trigger: AGAGGAGCAGGACTTTCTGCAATCCCTTTCACTGGT...TCCATATCTTTGTAAGTGTAAATTCCCCATCTGAAACACCCGCACTGGAAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| 3UTR-3UTR GCA 90 bp | CTTCCAGTGCGGGTGTTTCAGATGGGGAATTTACACTTACAAAGATATGGATGTGATTGCAGAAAGTCCTaGTCCTCTTCACTGTCTATA | + |
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Preference number: 2 (lower is better) Translates to: LPVRVFQMGNLHLQRYGCDCRKS*SSSLSI Trigger: TATAGACAGTGAAGAGGAGCAGGACTTTCTGCAATC...ACATCCATATCTTTGTAAGTGTAAATTCCCCATCTGAAACACCCGCACTGGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| 3UTR-3UTR CAA 90 bp | CATGAGACCAGTGAAAGGGATTGCAGAAAGTCCTGCTCCTCTTCACTGTCTATAAGCAGACTACAGTTTTaGGAAATGCAGGACACCAAA | + |
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Preference number: 3 (lower is better) Translates to: HETSERDCRKSCSSSLSISRLQF*EMQDTK Trigger: TTTGGTGTCCTGCATTTCCAAAAACTGTAGTCTGCT...TATAGACAGTGAAGAGGAGCAGGACTTTCTGCAATCCCTTTCACTGGTCTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| 3UTR TCA 72 bp | AAAGATATGGATGTAAAGTTGTACAGCTGTCTGCTGTaGGACCAGAAGCTGACATCATGGCACAGTTACATT | + |
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Preference number: 3 (lower is better) Translates to: KDMDVKLYSCLL*DQKLTSWHSYI Trigger: AATGTAACTGTGCCATGATGTCAGCTTCTGGTCTCACAGCAGACAGCTGTACAACTTTACATCCATATCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| 3UTR CCA 72 bp | CCAGAAGCTGACATCATGGCACAGTTACATTCATCATaGAGAATCTCTGCTATCTTTGGTTTGAAAGTTGAG | + |
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Preference number: 3 (lower is better) Translates to: PEADIMAQLHSS*RISAIFGLKVE Trigger: CTCAACTTTCAAACCAAAGATAGCAGAGATTCTCCATGATGAATGTAACTGTGCCATGATGTCAGCTTCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| CDS-3UTR CCA 90 bp | AGATATGGATGTAAAGTTGTACAGCTGTCTGCTGTGAGACCAGAAGCTGACATCCCTGGGTTTTCTTTGTaGCTTTCCTGGGTTCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: RYGCKVVQLSAVRPEADIPGFSL*LSWVLR Trigger: CCTCAGAACCCAGGAAAGCCACAAAGAAAACCCAGG...GATGTCAGCTTCTGGTCTCACAGCAGACAGCTGTACAACTTTACATCCATATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| CDS-3UTR CCA 90 bp | ATAAAGCAGACTACAGTTTTTGGAAATGCAGGACACCAAACTGTCATTCCAAGAAGTAGCCATGCCTGCTaGCCTTCAGATGCTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: IKQTTVFGNAGHQTVIPRSSHAC*PSDASG Trigger: CCCAGAAGCATCTGAAGGCCAGCAGGCATGGCTACT...TCTTGGAATGACAGTTTGGTGTCCTGCATTTCCAAAAACTGTAGTCTGCTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| CDS-3UTR CCA 90 bp | CTATATAAAGCAGACTACAGTTTTTGGAAATGCAGGACACCAAACTGTCATTCCTCTTTGTGGCTTTCCTaGGTTCTGAGGCCTGTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LYKADYSFWKCRTPNCHSSLWLS*VLRPVQ Trigger: CTGAACAGGCCTCAGAACCCAGGAAAGCCACAAAGA...GGAATGACAGTTTGGTGTCCTGCATTTCCAAAAACTGTAGTCTGCTTTATATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| CDS-3UTR GCA 90 bp | TGTTTCAGATGGGGAATTTACACTTACAAAGATATGGATGTAAAGTTGTACAGCTTACTGAAACGGAGCTaGGCCTGGGTTTTCTTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CFRWGIYTYKDMDVKLYSLLKRS*AWVFFV Trigger: CACAAAGAAAACCCAGGCGCAGCTCCGTTTCAGTAA...GCTGTACAACTTTACATCCATATCTTTGTAAGTGTAAATTCCCCATCTGAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| CDS-3UTR CCA 90 bp | TATAAAGCAGACTACAGTTTTTGGAAATGCAGGACACCAAACTGTCATTCCAAGATGGAGAAACAATTCTaGTTGAGATTACTAGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: YKADYSFWKCRTPNCHSKMEKQF*LRLLEQ Trigger: TTGCTCTAGTAATCTCAACCAGAATTGTTTCTCCAT...CTTGGAATGACAGTTTGGTGTCCTGCATTTCCAAAAACTGTAGTCTGCTTTATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203189.3 |
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| CDS GCA 90 bp | CTAAACTCCAGCAGGCGATCTCCTGCTGCATTACTGAAACGGAGCTaGGCCTGGGTTTTCTTTGTGGCTTTCCTGGGTTCTGAGGCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: LNSSRRSPAALLKRS*AWVFFVAFLGSEAC Trigger: ACAGGCCTCAGAACCCAGGAAAGCCACAAAGAAAACCCAGGCGCAGCTCCGTTTCAGTAATGCAGCAGGAGATCGCCTGCTGGAGTTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071149.7 ENSMUST00000170148.8 ENSMUST00000203189.3 |
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| CDS CCA 72 bp | AACGGAGCTGCGCCTGGGTTTTCTTTGTGGCTTTCCTaGGTTCTGAGGCCTGTTCAGTTCCAAGCAGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: NGAAPGFSLWLS*VLRPVQFQAGD Trigger: GTCACCTGCTTGGAACTGAACAGGCCTCAGAACCCAGGAAAGCCACAAAGAAAACCCAGGCGCAGCTCCGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071149.7 ENSMUST00000170148.8 ENSMUST00000203189.3 |
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| CDS CAA 90 bp | GCAGTAGCCATGCCTGCTGGCCTTCAGATGCTTCTGGGAAGCATGTaGAAGGCTAAACTCCAGCAGGCGATCTCCTGCTGCATTACTGAA | + |
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Preference number: 6 (lower is better) Translates to: AVAMPAGLQMLLGSM*KAKLQQAISCCITE Trigger: TTCAGTAATGCAGCAGGAGATCGCCTGCTGGAGTTTAGCCTTCAACATGCTTCCCAGAAGCATCTGAAGGCCAGCAGGCATGGCTACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071149.7 ENSMUST00000170148.8 ENSMUST00000203189.3 |
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| CDS CCA 72 bp | GAGGTGATGCAAAATTTTTGCAGTAGCCATGCCTGCTaGCCTTCAGATGCTTCTGGGAAGCATGTTGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: EVMQNFCSSHAC*PSDASGKHVEG Trigger: GCCTTCAACATGCTTCCCAGAAGCATCTGAAGGCCAGCAGGCATGGCTACTGCAAAAATTTTGCATCACCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000071149.7 ENSMUST00000170148.8 ENSMUST00000203189.3 |
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| CDS GCA 72 bp | CTGGAGGTGATGCAAAATTTTTGCAGTAGCCATGCCTaGTGGCCTTCAGATGCTTCTGGGAAGCATGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: LEVMQNFCSSHA*WPSDASGKHVE Trigger: TTCAACATGCTTCCCAGAAGCATCTGAAGGCCAGCAGGCATGGCTACTGCAAAAATTTTGCATCACCTCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000071149.7 ENSMUST00000170148.8 ENSMUST00000203189.3 |
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