Pregenerated sensors for KLRB1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079298Ensembl transcript IDs: ENSMUST00000032472.11, ENSMUST00000172887.8, ENSMUST00000205130.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAGGCATCACGTGCCCAGAGCTCAGTTTACCCAGGATATGTGGGTaGTATTTAAACCTGTCAGTCTCTCCCCCAAATCCCCTAACCCTG | + |
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Preference number: 1 (lower is better) Translates to: RGITCPELSLPRICG*YLNLSVSPPNPLTL Trigger: CAGGGTTAGGGGATTTGGGGGAGAGACTGACAGGTTTAAATAGCACCCACATATCCTGGGTAAACTGAGCTCTGGGCACGTGATGCCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR GCA 90 bp | ACAGAGACCAGCAAAGGTCACACAGACTCAAGGATTAAAATCAGGTaGCCCTCAGCTACCAGGGCTTCTTTCCACAGAACTCCTCTTAGA | + |
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Preference number: 1 (lower is better) Translates to: TETSKGHTDSRIKIR*PSATRASFHRTPLR Trigger: TCTAAGAGGAGTTCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGTGTGACCTTTGCTGGTCTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| 3UTR CCA 90 bp | AATCAGGATGGGATTCGCAGTCAGGAGTCATTACACGGGGTTTCATaGTTTAGTTCCTTTTGGCAGATCCAACGGTTGTCTGAAGAACAG | + |
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Preference number: 1 (lower is better) Translates to: NQDGIRSQESLHGVS*FSSFWQIQRLSEEQ Trigger: CTGTTCTTCAGACAACCGTTGGATCTGCCAAAAGGAACTAAACCATGAAACCCCGTGTAATGACTCCTGACTGCGAATCCCATCCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172887.8 |
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| 3UTR TCA 90 bp | CCTTCCCTTCTCATCAGCATATTCATTGGTAGCATATATGGCCACTaGGAAAGTCCTCTGGTGTCTTACTTTCTTACATGGGATCCCTCC | + |
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Preference number: 1 (lower is better) Translates to: PSLLISIFIGSIYGH*ESPLVSYFLTWDPS Trigger: GGAGGGATCCCATGTAAGAAAGTAAGACACCAGAGGACTTTCTCAGTGGCCATATATGCTACCAATGAATATGCTGATGAGAAGGGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR CCA 90 bp | TTAAACCTGTCAGTCTCTCCCCCAAATCCCCTAACCCTGGGCTTCTaGTGTCATTTGAGAGCAAAGGCATTAGTCAATATTCTATTCCTC | + |
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Preference number: 1 (lower is better) Translates to: LNLSVSPPNPLTLGF*CHLRAKALVNILFL Trigger: GAGGAATAGAATATTGACTAATGCCTTTGCTCTCAAATGACACCAGAAGCCCAGGGTTAGGGGATTTGGGGGAGAGACTGACAGGTTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR GCA 90 bp | AAAATGTCTTTTGGGTTCCTCTCTCCTATGTCAATGTCAAGTTCCTaGCTTTGGGAGACAGCTTCATTTATCTACTCTGCTGACATTGAT | + |
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Preference number: 1 (lower is better) Translates to: KMSFGFLSPMSMSSS*LWETASFIYSADID Trigger: ATCAATGTCAGCAGAGTAGATAAATGAAGCTGTCTCCCAAAGGCAGGAACTTGACATTGACATAGGAGAGAGGAACCCAAAAGACATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR-3UTR TCA 90 bp | TATTTAAACCTGTCAGTCTCTCCCCCAAATCCCCTAACCCTGGGCTTCTGGTGTGAGGCTGTCTGCAGGTaGCCTCAGGGACAGAGACCA | + |
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Preference number: 2 (lower is better) Translates to: YLNLSVSPPNPLTLGFWCEAVCR*PQGQRP Trigger: TGGTCTCTGTCCCTGAGGTCACCTGCAGACAGCCTC...ACACCAGAAGCCCAGGGTTAGGGGATTTGGGGGAGAGACTGACAGGTTTAAATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR CAA 90 bp | GTTCCTGCCTTTGGGAGACAGCTTCATTTATCTACTCTGCTGACATaGATTCAGGACCAAGATGTCCCCACAGCTGTGCCTTCCCTTCTC | + |
|
Preference number: 2 (lower is better) Translates to: VPAFGRQLHLSTLLT*IQDQDVPTAVPSLL Trigger: GAGAAGGGAAGGCACAGCTGTGGGGACATCTTGGTCCTGAATCAATGTCAGCAGAGTAGATAAATGAAGCTGTCTCCCAAAGGCAGGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR CAA 90 bp | TCAGTCTCTCCCCCAAATCCCCTAACCCTGGGCTTCTGGTGTCATTaGAGAGCAAAGGCATTAGTCAATATTCTATTCCTCAGTGTGGTG | + |
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Preference number: 2 (lower is better) Translates to: SVSPPNPLTLGFWCH*RAKALVNILFLSVV Trigger: CACCACACTGAGGAATAGAATATTGACTAATGCCTTTGCTCTCAAATGACACCAGAAGCCCAGGGTTAGGGGATTTGGGGGAGAGACTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR-3UTR TCA 90 bp | CCAAAACCTTTCAAAGAAAAGAAGGCCCTCTCTGCCAGTAATGGAGCTGAGAAGGATCCAACGGTTGTCTaGAGAACAGCCCTCAGAAGT | + |
|
Preference number: 2 (lower is better) Translates to: PKPFKEKKALSASNGAEKDPTVV*RTALRS Trigger: ACTTCTGAGGGCTGTTCTTCAGACAACCGTTGGATC...CTTCTCAGCTCCATTACTGGCAGAGAGGGCCTTCTTTTCTTTGAAAGGTTTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172887.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAAACCTGTCAGTCTCTCCCCCAAATCCCCTAACCCTGGGCTTCTGGTGTCATTACACGGGGTTTCATaGTTTAGTTCCTTTTGGCAG | + |
|
Preference number: 2 (lower is better) Translates to: FKPVSLSPKSPNPGLLVSLHGVS*FSSFWQ Trigger: CTGCCAAAAGGAACTAAACCATGAAACCCCGTGTAA...TGACACCAGAAGCCCAGGGTTAGGGGATTTGGGGGAGAGACTGACAGGTTTAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000172887.8 |
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| 3UTR CAA 90 bp | AAGATGTCCCCACAGCTGTGCCTTCCCTTCTCATCAGCATATTCATaGGTAGCATATATGGCCACTGAGAAAGTCCTCTGGTGTCTTACT | + |
|
Preference number: 2 (lower is better) Translates to: KMSPQLCLPFSSAYS*VAYMATEKVLWCLT Trigger: AGTAAGACACCAGAGGACTTTCTCAGTGGCCATATATGCTACCAATGAATATGCTGATGAGAAGGGAAGGCACAGCTGTGGGGACATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR GCA 72 bp | CTGCCAGTAATGGAGCTGAGAAGCCTAGCCCCAAGGTaGCAGCCTTGGCTCAGGGTCTGCTGGTACATCATG | + |
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Preference number: 3 (lower is better) Translates to: LPVMELRSLAPR*QPWLRVCWYIM Trigger: CATGATGTACCAGCAGACCCTGAGCCAAGGCTGGCACCTTGGGGCTAGGCTTCTCAGCTCCATTACTGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR GCA 72 bp | TCTGCTGGTACATCATGGCCTGGTAGAGGCATCACGTaGCCAGAGCTCAGTTTACCCAGGATATGTGGGTGC | + |
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Preference number: 3 (lower is better) Translates to: SAGTSWPGRGIT*PELSLPRICGC Trigger: GCACCCACATATCCTGGGTAAACTGAGCTCTGGGCACGTGATGCCTCTACCAGGCCATGATGTACCAGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR GCA 72 bp | ACGTGCCCAGAGCTCAGTTTACCCAGGATATGTGGGTaGTATTTAAACCTGTCAGTCTCTCCCCCAAATCCC | + |
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Preference number: 3 (lower is better) Translates to: TCPELSLPRICG*YLNLSVSPPNP Trigger: GGGATTTGGGGGAGAGACTGACAGGTTTAAATAGCACCCACATATCCTGGGTAAACTGAGCTCTGGGCACGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR CCA 72 bp | CATCACGTGCCCAGAGCTCAGTTTACCCAGGATATGTaGGTGCTATTTAAACCTGTCAGTCTCTCCCCCAAA | + |
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Preference number: 3 (lower is better) Translates to: HHVPRAQFTQDM*VLFKPVSLSPK Trigger: TTTGGGGGAGAGACTGACAGGTTTAAATAGCACCCACATATCCTGGGTAAACTGAGCTCTGGGCACGTGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR GCA 72 bp | AGCAAAGGTCACACAGACTCAAGGATTAAAATCAGGTaGCCCTCAGCTACCAGGGCTTCTTTCCACAGAACT | + |
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Preference number: 3 (lower is better) Translates to: SKGHTDSRIKIR*PSATRASFHRT Trigger: AGTTCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGTGTGACCTTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| 3UTR GCA 72 bp | CCTCTGGTGTCTTACTTTCTTACATGGGATCCCTCCTaGTCATATCTGCTTAGCTGCATGCTCCATGCACTT | + |
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Preference number: 3 (lower is better) Translates to: PLVSYFLTWDPS*SYLLSCMLHAL Trigger: AAGTGCATGGAGCATGCAGCTAAGCAGATATGAGCAGGAGGGATCCCATGTAAGAAAGTAAGACACCAGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR CCA 72 bp | GGGATTCGCAGTCAGGAGTCATTACACGGGGTTTCATaGTTTAGTTCCTTTTGGCAGATCCAACGGTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: GIRSQESLHGVS*FSSFWQIQRLS Trigger: AGACAACCGTTGGATCTGCCAAAAGGAACTAAACCATGAAACCCCGTGTAATGACTCCTGACTGCGAATCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172887.8 |
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| 3UTR GCA 72 bp | CTTACATGGGATCCCTCCTGCTCATATCTGCTTAGCTaGATGCTCCATGCACTTAACAGTTATAGGCTCCTA | + |
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Preference number: 3 (lower is better) Translates to: LTWDPSCSYLLS*MLHALNSYRLL Trigger: TAGGAGCCTATAACTGTTAAGTGCATGGAGCATGCAGCTAAGCAGATATGAGCAGGAGGGATCCCATGTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR CCA 72 bp | TCAGTCTCTCCCCCAAATCCCCTAACCCTGGGCTTCTaGTGTCATTTGAGAGCAAAGGCATTAGTCAATATT | + |
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Preference number: 3 (lower is better) Translates to: SVSPPNPLTLGF*CHLRAKALVNI Trigger: AATATTGACTAATGCCTTTGCTCTCAAATGACACCAGAAGCCCAGGGTTAGGGGATTTGGGGGAGAGACTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| 3UTR CCA 72 bp | TCATTGGTAGCATATATGGCCACTGAGAAAGTCCTCTaGTGTCTTACTTTCTTACATGGGATCCCTCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: SLVAYMATEKVL*CLTFLHGIPPA Trigger: AGCAGGAGGGATCCCATGTAAGAAAGTAAGACACCAGAGGACTTTCTCAGTGGCCATATATGCTACCAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR CCA 72 bp | TTCCTCTCTCCTATGTCAATGTCAAGTTCCTGCCTTTaGGAGACAGCTTCATTTATCTACTCTGCTGACATT | + |
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Preference number: 3 (lower is better) Translates to: FLSPMSMSSSCL*ETASFIYSADI Trigger: AATGTCAGCAGAGTAGATAAATGAAGCTGTCTCCCAAAGGCAGGAACTTGACATTGACATAGGAGAGAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| 3UTR CAA 72 bp | AATGGAGCTGAGAAGCCTAGCCCCAAGGTGCCAGCCTaGGCTCAGGGTCTGCTGGTACATCATGGCCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: NGAEKPSPKVPA*AQGLLVHHGLV Trigger: TACCAGGCCATGATGTACCAGCAGACCCTGAGCCAAGGCTGGCACCTTGGGGCTAGGCTTCTCAGCTCCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| CDS-3UTR TCA 90 bp | GGTGCCCCTCAGCTACCAGGGCTTCTTTCCACAGAACTCCTCTTAGAACGGCACGATCCAACGGTTGTCTaGAGAACAGCCCTCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: GAPQLPGLLSTELLLERHDPTVV*RTALRS Trigger: ACTTCTGAGGGCTGTTCTTCAGACAACCGTTGGATC...GTGCCGTTCTAAGAGGAGTTCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| CDS-3UTR TCA 90 bp | AGCCTTGGCTCAGGGTCTGCTGGTACATCATGGCCTGGTAGAGGCATCACGTGCAGTTCTTCTTGGTCTTaGATGAGCAGCAAAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLGSGSAGTSWPGRGITCSSSWS*MSSKVA Trigger: AGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACT...GCACGTGATGCCTCTACCAGGCCATGATGTACCAGCAGACCCTGAGCCAAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| CDS-3UTR TCA 90 bp | GGCCTGGTAGAGGCATCACGTGCCCAGAGCTCAGTTTACCCAGGATATGTGGGTAGTTCTTCTTGGTCTTaGATGAGCAGCAAAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: GLVEASRAQSSVYPGYVGSSSWS*MSSKVA Trigger: AGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACT...ACCCACATATCCTGGGTAAACTGAGCTCTGGGCACGTGATGCCTCTACCAGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 |
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| CDS-3UTR CCA 90 bp | CATGGCCTGGTAGAGGCATCACGTGCCCAGAGCTCAGTTTACCCAGGATATGTGCTTTTTCTCCTGAGATaGCGGCACAGCTGCCATTTT | + |
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Preference number: 4 (lower is better) Translates to: HGLVEASRAQSSVYPGYVLFLLR*RHSCHF Trigger: AAAATGGCAGCTGTGCCGCCATCTCAGGAGAAAAAG...CACATATCCTGGGTAAACTGAGCTCTGGGCACGTGATGCCTCTACCAGGCCATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| CDS-3UTR CCA 90 bp | CAGAGTCCATGTGCTGTGCCACTAACTGCACTGGGAGGCAGACAGCAGAGACAGTTACACGGGGTTTCATaGTTTAGTTCCTTTTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: QSPCAVPLTALGGRQQRQLHGVS*FSSFWQ Trigger: CTGCCAAAAGGAACTAAACCATGAAACCCCGTGTAA...CTGTCTCTGCTGTCTGCCTCCCAGTGCAGTTAGTGGCACAGCACATGGACTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| CDS-3UTR TCA 90 bp | ACAGACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTTCTTTCCACGATCCAACGGTTGTCTaGAGAACAGCCCTCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: TDSRIKIRCPSATRASFHDPTVV*RTALRS Trigger: ACTTCTGAGGGCTGTTCTTCAGACAACCGTTGGATC...GTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| CDS-3UTR CCA 90 bp | GGTCACACAGACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTTCTCTTTTTCTCCTGAGATaGCGGCACAGCTGCCATTTT | + |
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Preference number: 4 (lower is better) Translates to: GHTDSRIKIRCPSATRASLFLLR*RHSCHF Trigger: AAAATGGCAGCTGTGCCGCCATCTCAGGAGAAAAAG...AGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGTGTGACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| CDS-3UTR CCA 90 bp | GCCCCTCAGCTACCAGGGCTTCTTTCCACAGAACTCCTCTTAGAACGGCACATCTTACACGGGGTTTCATaGTTTAGTTCCTTTTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: APQLPGLLSTELLLERHILHGVS*FSSFWQ Trigger: CTGCCAAAAGGAACTAAACCATGAAACCCCGTGTAA...GATGTGCCGTTCTAAGAGGAGTTCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| CDS-3UTR TCA 90 bp | GGTGCCCCTCAGCTACCAGGGCTTCTTTCCACAGAACTCCTCTTAGAACGGCACTTAGTACATCAGAATTaGAAGCTGTGCCATTTATCC | + |
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Preference number: 4 (lower is better) Translates to: GAPQLPGLLSTELLLERHLVHQN*KLCHLS Trigger: GGATAAATGGCACAGCTTTCAATTCTGATGTACTAA...GTGCCGTTCTAAGAGGAGTTCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| 3UTR CAA 72 bp | CCACAGCTGTGCCTTCCCTTCTCATCAGCATATTCATaGGTAGCATATATGGCCACTGAGAAAGTCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: PQLCLPFSSAYS*VAYMATEKVLW Trigger: CCAGAGGACTTTCTCAGTGGCCATATATGCTACCAATGAATATGCTGATGAGAAGGGAAGGCACAGCTGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| CDS-3UTR TCA 90 bp | ACAGACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTTCTTTCCACAGTTCTTCTTGGTCTTaGATGAGCAGCAAAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: TDSRIKIRCPSATRASFHSSSWS*MSSKVA Trigger: AGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACT...GTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR TCA 90 bp | CCAGTGTTTTCAGAGTCCATGTGCTGTGCCACTAACTGCACTGGGAGGCAGACATTAGTACATCAGAATTaGAAGCTGTGCCATTTATCC | + |
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Preference number: 4 (lower is better) Translates to: PVFSESMCCATNCTGRQTLVHQN*KLCHLS Trigger: GGATAAATGGCACAGCTTTCAATTCTGATGTACTAA...TGTCTGCCTCCCAGTGCAGTTAGTGGCACAGCACATGGACTCTGAAAACACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032472.11 ENSMUST00000205130.3 |
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| 3UTR CAA 72 bp | TTTGGGAGACAGCTTCATTTATCTACTCTGCTGACATaGATTCAGGACCAAGATGTCCCCACAGCTGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: FGRQLHLSTLLT*IQDQDVPTAVP Trigger: AGGCACAGCTGTGGGGACATCTTGGTCCTGAATCAATGTCAGCAGAGTAGATAAATGAAGCTGTCTCCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032472.11 |
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| CDS-3UTR CCA 90 bp | CAGGGACAGAGACCAGCAAAGGTCACACAGACTCAAGGATTAAAATCAGGTGCCTCATGCTTAGGTTCTTaGATCCTGGCTAGGTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: QGQRPAKVTQTQGLKSGASCLGS*ILARFK Trigger: TTTAAACCTAGCCAGGATCCAAGAACCTAAGCATGA...GGCACCTGATTTTAATCCTTGAGTCTGTGTGACCTTTGCTGGTCTCTGTCCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR CCA 90 bp | ACAGACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTTCTTTCCACTCATGCTTAGGTTCTTaGATCCTGGCTAGGTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: TDSRIKIRCPSATRASFHSCLGS*ILARFK Trigger: TTTAAACCTAGCCAGGATCCAAGAACCTAAGCATGA...GTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR CCA 90 bp | CAGACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTTCTTTCCACATCATGCTTAGGTTCTTaGATCCTGGCTAGGTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: QTQGLKSGAPQLPGLLSTSCLGS*ILARFK Trigger: TTTAAACCTAGCCAGGATCCAAGAACCTAAGCATGA...TGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR CAA 90 bp | GCACTGGGAGGCAGACAGCAGAGACAGGTTAGGTGCAGAGATCTGGTGCGGATGATGTGTTCTGTTCTCTaGAACATCCGCGCAGATTTT | + |
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Preference number: 5 (lower is better) Translates to: ALGGRQQRQVRCRDLVRMMCSVL*NIRADF Trigger: AAAATCTGCGCGGATGTTCAAGAGAACAGAACACAT...CATCCGCACCAGATCTCTGCACCTAACCTGTCTCTGCTGTCTGCCTCCCAGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR CAA 90 bp | AAAGGTCACACAGACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTATGTGTTCTGTTCTCTaGAACATCCGCGCAGATTTT | + |
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Preference number: 5 (lower is better) Translates to: KGHTDSRIKIRCPSATRAMCSVL*NIRADF Trigger: AAAATCTGCGCGGATGTTCAAGAGAACAGAACACAT...AGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGTGTGACCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR CAA 90 bp | TTAAGAATCCCAGTGTTTTCAGAGTCCATGTGCTGTGCCACTAACTGCACTGGGATGTGTTCTGTTCTCTaGAACATCCGCGCAGATTTT | + |
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Preference number: 5 (lower is better) Translates to: LRIPVFSESMCCATNCTGMCSVL*NIRADF Trigger: AAAATCTGCGCGGATGTTCAAGAGAACAGAACACAT...CCCAGTGCAGTTAGTGGCACAGCACATGGACTCTGAAAACACTGGGATTCTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS-3UTR CAA 90 bp | GACTCAAGGATTAAAATCAGGTGCCCCTCAGCTACCAGGGCTTCTTTCCACAGACATTCCTTCCAAGTGTaGGAAACTGTTGTATGTGTT | + |
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Preference number: 5 (lower is better) Translates to: DSRIKIRCPSATRASFHRHSFQV*ETVVCV Trigger: AACACATACAACAGTTTCCAACACTTGGAAGGAATG...TCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205130.3 |
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| CDS GCA 72 bp | CGACAGGTGTCTGGGGAAAGAGATGGAGGTGAATCATaGTTAGGTTCTTGGATCCTGGCTAGGTTTAAATCT | + |
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Preference number: 6 (lower is better) Translates to: RQVSGERDGGES*LGSWILARFKS Trigger: AGATTTAAACCTAGCCAGGATCCAAGAACCTAAGCATGATTCACCTCCATCTCTTTCCCCAGACACCTGTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032472.11 ENSMUST00000172887.8 ENSMUST00000205130.3 |
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| CDS CAA 72 bp | AATCAATTCGACATTCCTTCCAAGTGTTGGAAACTGTaGTATGTGTTCTGTTCTCTTGAACATCCGCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: NQFDIPSKCWKL*YVFCSLEHPRR Trigger: TCTGCGCGGATGTTCAAGAGAACAGAACACATACAACAGTTTCCAACACTTGGAAGGAATGTCGAATTGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205130.3 |
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| CDS CCA 72 bp | TTTTATCACAATCAATTCGACATTCCTTCCAAGTGTTaGAAACTGTTGTATGTGTTCTGTTCTCTTGAACAT | + |
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Preference number: 6 (lower is better) Translates to: FYHNQFDIPSKC*KLLYVFCSLEH Trigger: ATGTTCAAGAGAACAGAACACATACAACAGTTTCCAACACTTGGAAGGAATGTCGAATTGATTGTGATAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205130.3 |
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