Pregenerated sensors for KLRA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067599Ensembl transcript IDs: ENSMUST00000032286.7, ENSMUST00000049304.14, ENSMUST00000088011.11, ENSMUST00000112013.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGAGTAGGTCTGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCAGATTGTCTCTCTCTTTaGACTTTTACACTCATTGGA | + |
|
Preference number: 2 (lower is better) Translates to: QSRSVQSPQGRKMSSALSDCLSL*TFTLIG Trigger: TCCAATGAGTGTAAAAGTGCAAAGAGAGAGACAATC...TGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACAGACCTACTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGAGTAGGTCTGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCAAGATTGTCTCTCTCTTaGCACTTTTACACTCATTGG | + |
|
Preference number: 3 (lower is better) Translates to: QSRSVQSPQGRKMSSALSRLSLS*HFYTHW Trigger: CCAATGAGTGTAAAAGTGCAAAGAGAGAGACAATCT...TGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACAGACCTACTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| 3UTR GCA 72 bp | GTCTGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTaGTCTGTCATGTCATTTTTCAGAGAACATTCCCAA | + |
|
Preference number: 3 (lower is better) Translates to: VCSVSTRKEDVL*SVMSFFREHSQ Trigger: TTGGGAATGTTCTCTGAAAAATGACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | TCAGATAAGCTTTGGGGGACCAGAGTAGGTCTGTTCAGTCTCCACAAGGAAGGAGAGCTTCCAGGGGACTaGATACTCTCTGTAGCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SDKLWGTRVGLFSLHKEGELPGD*ILSVAS Trigger: GCTTGCTACAGAGAGTATTCAGTCCCCTGGAAGCTC...TCCTTCCTTGTGGAGACTGAACAGACCTACTCTGGTCCCCCAAAGCTTATCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CCA 90 bp | CAGAGTAGGTCTGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCACCTCTGCCTTGGAGATaGGTCTTTTGTGAACACCTG | + |
|
Preference number: 4 (lower is better) Translates to: QSRSVQSPQGRKMSSALSPLPWR*VFCEHL Trigger: CAGGTGTTCACAAAAGACCCATCTCCAAGGCAGAGG...TGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACAGACCTACTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | TCAGATAAGCTTTGGGGGACCAGAGTAGGTCTGTTCAGTCTCCACAAGGAAGGACACAAGCTATCACAATaGGCTTCCAGGGGACTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: SDKLWGTRVGLFSLHKEGHKLSQ*ASRGLN Trigger: ATTCAGTCCCCTGGAAGCTCATTGTGATAGCTTGTG...TCCTTCCTTGTGGAGACTGAACAGACCTACTCTGGTCCCCCAAAGCTTATCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR GCA 90 bp | AGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCATGTCATTTTTCAGAGATCTACCCTTCCCCTCTaGCTTGGAGATGGGTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SLHKEGRCPLLCHVIFQRSTLPL*LGDGSF Trigger: AAAAGACCCATCTCCAAGGCAGAGGGGAAGGGTAGA...TCTCTGAAAAATGACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112013.8 |
||
| CDS-3UTR CCA 90 bp | GTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCATGTCATTTTTCAGAGAACCTTCCCCTCTGCCTTaGAGATGGGTCTTTTGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VSTRKEDVLCSVMSFFREPSPLP*RWVFCE Trigger: TTCACAAAAGACCCATCTCCAAGGCAGAGGGGAAGG...TTCTCTGAAAAATGACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | AGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACACTCATGCTTCTCTGGGCCTTTaGGGCTCCTCAGTCCTCACT | + |
|
Preference number: 4 (lower is better) Translates to: RTFPKSSRLSLSLHFYTHASLGL*GSSVLT Trigger: AGTGAGGACTGAGGAGCCTCAAAGGCCCAGAGAAGC...ATGAGTGTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | TGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCATGTCATTTTTCTGTTCTGATCCCTGCTaGGGGATTCCAGAAGATCAT | + |
|
Preference number: 4 (lower is better) Translates to: CSVSTRKEDVLCSVMSFFCSDPC*GIPEDH Trigger: ATGATCTTCTGGAATCCCTCAGCAGGGATCAGAACA...GAAAAATGACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | AGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCATGTCATTTTTCAGAGAATGAAATCTCACAGTTaGGTAAGTGACCTCCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SLHKEGRCPLLCHVIFQRMKSHS*VSDLLL Trigger: GAGCAGGAGGTCACTTACTCAACTGTGAGATTTCAT...TCTCTGAAAAATGACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | TTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACACTCATTGGAGAGAGCTTCCAGGGGACTaGATACTCTCTGTAGCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: FPKSSRLSLSLHFYTHWRELPGD*ILSVAS Trigger: GCTTGCTACAGAGAGTATTCAGTCCCCTGGAAGCTC...TCTCCAATGAGTGTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | CATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACACTCATTGGACACAAGCTATCACAATaGGCTTCCAGGGGACTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: HSQNLPDCLSLCTFTLIGHKLSQ*ASRGLN Trigger: ATTCAGTCCCCTGGAAGCTCATTGTGATAGCTTGTG...TCCAATGAGTGTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | ATGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCTGTTCTGATCCCTGCTaGGGGATTCCAGAAGATCAT | + |
|
Preference number: 4 (lower is better) Translates to: MSFFREHSQNLPDCLSLCCSDPC*GIPEDH Trigger: ATGATCTTCTGGAATCCCTCAGCAGGGATCAGAACA...GCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | TTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACAATCCAGGAAATGTCTaGAGGAGCCAGGTTCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: FQRTFPKSSRLSLSLHFYNPGNV*RSQVLK Trigger: CTTCAGAACCTGGCTCCTTCAGACATTTCCTGGATT...GTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | TGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCAAATCCAGGAAATGTCTaGAGGAGCCAGGTTCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: CHFSENIPKIFQIVSLFANPGNV*RSQVLK Trigger: CTTCAGAACCTGGCTCCTTCAGACATTTCCTGGATT...TGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR GCA 90 bp | TTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACCACTTTGCGTGGGGCTaGAGTTATCGTGGCAATTTA | + |
|
Preference number: 4 (lower is better) Translates to: FQRTFPKSSRLSLSLHFYHFAWG*SYRGNL Trigger: TAAATTGCCACGATAACTGCAGCCCCACGCAAAGTG...GTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR GCA 90 bp | TGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACACTTTGCGTGGGGCTaGAGTTATCGTGGCAATTTA | + |
|
Preference number: 4 (lower is better) Translates to: CHFSENIPKIFQIVSLFAHFAWG*SYRGNL Trigger: TAAATTGCCACGATAACTGCAGCCCCACGCAAAGTG...TGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CCA 90 bp | TTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACACTCATTGGAGATCAGAAGGGATAAGCTaGAAATCTGGCAGGTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: FPKSSRLSLSLHFYTHWRSEGIS*KSGRSV Trigger: AACAGACCTGCCAGATTTCCAGCTTATCCCTTCTGA...TCTCCAATGAGTGTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR TCA 90 bp | ATGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCATGAAATCTCACAGTTaGGTAAGTGACCTCCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: MSFFREHSQNLPDCLSLCMKSHS*VSDLLL Trigger: GAGCAGGAGGTCACTTACTCAACTGTGAGATTTCAT...GCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CCA 90 bp | TGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCAGATAAGCTGGAAATCTaGCAGGTCTGTTTACATCCA | + |
|
Preference number: 4 (lower is better) Translates to: CHFSENIPKIFQIVSLFADKLEI*QVCLHP Trigger: TGGATGTAAACAGACCTGCCAGATTTCCAGCTTATC...TGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR GCA 90 bp | AGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACACTCATAAACCTCTACCTGTGTaGTGTGAGGAATCTGAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: RTFPKSSRLSLSLHFYTHKPLPV*CEESEK Trigger: TTTTTCAGATTCCTCACAGCACACAGGTAGAGGTTT...ATGAGTGTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049304.14 |
||
| CDS-3UTR CCA 90 bp | TTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTACAATCTGAAAAAGTCTTaGTTTCACTGTACCATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: FQRTFPKSSRLSLSLHFYNLKKS*FHCTIC Trigger: ACAGATGGTACAGTGAAACCAAGACTTTTTCAGATT...GTAAAAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CCA 90 bp | CATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTAATCTGAAAAAGTCTTaGTTTCACTGTACCATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: HFSENIPKIFQIVSLFALNLKKS*FHCTIC Trigger: ACAGATGGTACAGTGAAACCAAGACTTTTTCAGATT...AAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS TCA 90 bp | TGTGAGGAATCTGAAAAAGTCTTGGTTTCACTGTACCATCTGTTCTaGTCCCTGCTGAGGGATTCCAGAAGATCATTGCCTGGCCTACAC | + |
|
Preference number: 5 (lower is better) Translates to: CEESEKVLVSLYHLF*SLLRDSRRSLPGLH Trigger: GTGTAGGCCAGGCAATGATCTTCTGGAATCCCTCAGCAGGGATCAGAACAGATGGTACAGTGAAACCAAGACTTTTTCAGATTCCTCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | AGTAGGTCTGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCATGTGATTCCAGAAGATCATaGCCTGGCCTACACTCTATA | + |
|
Preference number: 5 (lower is better) Translates to: SRSVQSPQGRKMSSALSCDSRRS*PGLHSI Trigger: TATAGAGTGTAGGCCAGGCAATGATCTTCTGGAATC...ACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACAGACCTACT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS CCA 90 bp | CCATCTGTTCTGATCCCTGCTGAGGGATTCCAGAAGATCATTGCCTaGCCTACACTCTATAGACTTATTTCTCAGCAGTTCATCCTTCAA | + |
|
Preference number: 5 (lower is better) Translates to: PSVLIPAEGFQKIIA*PTLYRLISQQFILQ Trigger: TTGAAGGATGAACTGCTGAGAAATAAGTCTATAGAGTGTAGGCCAGGCAATGATCTTCTGGAATCCCTCAGCAGGGATCAGAACAGATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | TCAGATAAGCTTTGGGGGACCAGAGTAGGTCTGTTCAGTCTCCACAAGGAAGGACTAGTTTCTGCAACCTaGAAGACTCATGAAATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SDKLWGTRVGLFSLHKEGLVSAT*KTHEIS Trigger: TGAGATTTCATGAGTCTTCAAGGTTGCAGAAACTAG...TCCTTCCTTGTGGAGACTGAACAGACCTACTCTGGTCCCCCAAAGCTTATCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | TGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACAAGTTGACGTCACTTaGCGTGGGGCTGCAGTTATC | + |
|
Preference number: 5 (lower is better) Translates to: CHFSENIPKIFQIVSLFAQVDVT*RGAAVI Trigger: GATAACTGCAGCCCCACGCAAAGTGACGTCAACTTG...TGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | ATGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCCAAGTTGACGTCACTTaGCGTGGGGCTGCAGTTATC | + |
|
Preference number: 5 (lower is better) Translates to: MSFFREHSQNLPDCLSLCQVDVT*RGAAVI Trigger: GATAACTGCAGCCCCACGCAAAGTGACGTCAACTTG...GCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | AGTAGGTCTGTTCAGTCTCCACAAGGAAGGAAGATGTCCTCTGCTCTGTCATGTTTATCACAGTCCCCATaGTCTAGTCTTGTTTTAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SRSVQSPQGRKMSSALSCLSQSP*SSLVLD Trigger: ATCTAAAACAAGACTAGACAATGGGGACTGTGATAA...ACATGACAGAGCAGAGGACATCTTCCTTCCTTGTGGAGACTGAACAGACCTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | CATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTAGTTCATCCTTCAAGTaGACGTCACTTTGCGTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: HFSENIPKIFQIVSLFALSSSFK*TSLCVG Trigger: CCCCACGCAAAGTGACGTCAACTTGAAGGATGAACT...AAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | ACAAATAAATCAGATAAGCTTTGGGGGACCAGAGTAGGTCTGTTCAGTCTCCACTTCAGTTCATCCTCATaGTCTATCTTCAGAAGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: TNKSDKLWGTRVGLFSLHFSSSS*SIFRRD Trigger: ATCCCTTCTGAAGATAGACAATGAGGATGAACTGAA...GTGGAGACTGAACAGACCTACTCTGGTCCCCCAAAGCTTATCTGATTTATTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | TGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCAGATTCCAGAAGATCATaGCCTGGCCTACACTCTATA | + |
|
Preference number: 5 (lower is better) Translates to: CHFSENIPKIFQIVSLFADSRRS*PGLHSI Trigger: TATAGAGTGTAGGCCAGGCAATGATCTTCTGGAATC...TGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS GCA 90 bp | TTCATGTTTTTGTTGACTATGCTGAAAAATCGTTATTGCCAACAATaGAACAGTTACCAGGAGAAGGAAACAGAGGATTCCACAAGCTAT | + |
|
Preference number: 5 (lower is better) Translates to: FMFLLTMLKNRYCQQ*NSYQEKETEDSTSY Trigger: ATAGCTTGTGGAATCCTCTGTTTCCTTCTCCTGGTAACTGTTGCATTGTTGGCAATAACGATTTTTCAGCATAGTCAACAAAAACATGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | ATGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCCTAGTTTCTGCAACCTaGAAGACTCATGAAATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: MSFFREHSQNLPDCLSLCLVSAT*KTHEIS Trigger: TGAGATTTCATGAGTCTTCAAGGTTGCAGAAACTAG...GCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | TGTCATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCATTCAGTTCATCCTCATaGTCTATCTTCAGAAGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: CHFSENIPKIFQIVSLFAFSSSS*SIFRRD Trigger: ATCCCTTCTGAAGATAGACAATGAGGATGAACTGAA...TGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS-3UTR CAA 90 bp | CATTTTTCAGAGAACATTCCCAAAATCTTCCAGATTGTCTCTCTCTTTGCACTTTTATCACAGTCCCCATaGTCTAGTCTTGTTTTAGAT | + |
|
Preference number: 5 (lower is better) Translates to: HFSENIPKIFQIVSLFALLSQSP*SSLVLD Trigger: ATCTAAAACAAGACTAGACAATGGGGACTGTGATAA...AAGTGCAAAGAGAGAGACAATCTGGAAGATTTTGGGAATGTTCTCTGAAAAATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000049304.14 ENSMUST00000112013.8 |
||
| CDS CCA 72 bp | TCCAGGGGACTGAATACTCTCTGTAGCAAGCTTCTCTaGGCCTTTGAGGCTCCTCAGTCCTCACTAGTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: SRGLNTLCSKLL*AFEAPQSSLVS Trigger: AGAAACTAGTGAGGACTGAGGAGCCTCAAAGGCCCAGAGAAGCTTGCTACAGAGAGTATTCAGTCCCCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS TCA 72 bp | TCTTGGTTTCACTGTACCATCTGTTCTGATCCCTGCTaGGGGATTCCAGAAGATCATTGCCTGGCCTACACT | + |
|
Preference number: 6 (lower is better) Translates to: SWFHCTICSDPC*GIPEDHCLAYT Trigger: AGTGTAGGCCAGGCAATGATCTTCTGGAATCCCTCAGCAGGGATCAGAACAGATGGTACAGTGAAACCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS CCA 72 bp | CTGATCCCTGCTGAGGGATTCCAGAAGATCATTGCCTaGCCTACACTCTATAGACTTATTTCTCAGCAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LIPAEGFQKIIA*PTLYRLISQQF Trigger: GAACTGCTGAGAAATAAGTCTATAGAGTGTAGGCCAGGCAATGATCTTCTGGAATCCCTCAGCAGGGATCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS CAA 90 bp | GGCCTACACTCTATAGACTTATTTCTCAGCAGTTCATCCTTCAAGTaGACGTCACTTTGCGTGGGGCTGCAGTTATCGTGGCAATTTAGA | + |
|
Preference number: 6 (lower is better) Translates to: GLHSIDLFLSSSSFK*TSLCVGLQLSWQFR Trigger: TCTAAATTGCCACGATAACTGCAGCCCCACGCAAAGTGACGTCAACTTGAAGGATGAACTGCTGAGAAATAAGTCTATAGAGTGTAGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS CAA 72 bp | TCTATAGACTTATTTCTCAGCAGTTCATCCTTCAAGTaGACGTCACTTTGCGTGGGGCTGCAGTTATCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SIDLFLSSSSFK*TSLCVGLQLSW Trigger: CCACGATAACTGCAGCCCCACGCAAAGTGACGTCAACTTGAAGGATGAACTGCTGAGAAATAAGTCTATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS TCA 72 bp | TCTGAAAAAGTCTTGGTTTCACTGTACCATCTGTTCTaGTCCCTGCTGAGGGATTCCAGAAGATCATTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: SEKVLVSLYHLF*SLLRDSRRSLP Trigger: AGGCAATGATCTTCTGGAATCCCTCAGCAGGGATCAGAACAGATGGTACAGTGAAACCAAGACTTTTTCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS TCA 72 bp | AATCCAATCCAGGAAATGTCTGAAGGAGCCAGGTTCTaGAGGAACTTCAGTTCATCCTCATTGTCTATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: NPIQEMSEGARF*RNFSSSSLSIF Trigger: GAAGATAGACAATGAGGATGAACTGAAGTTCCTTCAGAACCTGGCTCCTTCAGACATTTCCTGGATTGGATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS CCA 72 bp | AAGTTGACGTCACTTTGCGTGGGGCTGCAGTTATCGTaGCAATTTAGAGTTTCCTGTAGTTCATGTTTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: KLTSLCVGLQLS*QFRVSCSSCFC Trigger: ACAAAAACATGAACTACAGGAAACTCTAAATTGCCACGATAACTGCAGCCCCACGCAAAGTGACGTCAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||
| CDS GCA 72 bp | TTGTTGACTATGCTGAAAAATCGTTATTGCCAACAATaGAACAGTTACCAGGAGAAGGAAACAGAGGATTCC | + |
|
Preference number: 6 (lower is better) Translates to: LLTMLKNRYCQQ*NSYQEKETEDS Trigger: GGAATCCTCTGTTTCCTTCTCCTGGTAACTGTTGCATTGTTGGCAATAACGATTTTTCAGCATAGTCAACAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032286.7 ENSMUST00000049304.14 ENSMUST00000088011.11 ENSMUST00000112013.8 |
||