Pregenerated sensors for KLRA6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061769Ensembl transcript IDs: ENSMUST00000074056.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | GCAAAGGGTCCCCTTCACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGAATGCTCTTGCAGCTTaGTCTCTATTCACAGCAGTC | + |
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Preference number: 3 (lower is better) Translates to: AKGPLHQSRCVLSPTGRKNALAA*SLFTAV Trigger: GACTGCTGTGAATAGAGACAAAGCTGCAAGAGCATT...CTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTGAAGGGGACCCTTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| 3UTR CCA 72 bp | AGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATaGCCTCTGTTCTGCAAGTTAGATACCAGAGAACAG | + |
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Preference number: 3 (lower is better) Translates to: RVDVSCLQQEGR*PLFCKLDTREQ Trigger: CTGTTCTCTGGTATCTAACTTGCAGAACAGAGGCCATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR TCA 90 bp | AAGGGTCCCCTTCACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGGCTTCTCTGGGCCCTTaGGTCTCCTCATGCCTTACA | + |
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Preference number: 4 (lower is better) Translates to: KGPLHQSRCVLSPTGRKMASLGP*VSSCLT Trigger: TGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGC...CATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTGAAGGGGACCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR TCA 90 bp | CACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGGCCTCTGTTCTGCAAGAGCTTTCACAATaGGCTGCCAGCATACTGAAC | + |
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Preference number: 4 (lower is better) Translates to: HQSRCVLSPTGRKMASVLQELSQ*AASILN Trigger: GTTCAGTATGCTGGCAGCTCATTGTGAAAGCTCTTG...CAGAACAGAGGCCATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR CCA 90 bp | TTCACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGGCCTCTGTTCCAGAAGTTCATTGCCTaGCCTAGAGTCTATAGACCT | + |
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Preference number: 4 (lower is better) Translates to: FTRVDVSCLQQEGRWPLFQKFIA*PRVYRP Trigger: AGGTCTATAGACTCTAGGCCAGGCAATGAACTTCTG...GAACAGAGGCCATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTGAA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR TCA 90 bp | CAGTCCCAATGCTCTTGCAGCTTTGTCTCTATTCACAGCAGTCTATGTTCTTTAGAGCTGCCAGCATACTaGACACTTTCTGTAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: QSQCSCSFVSIHSSLCSLELPAY*TLSVAS Trigger: GCTGGCTACAGAAAGTGTTCAGTATGCTGGCAGCTC...TAAAGAACATAGACTGCTGTGAATAGAGACAAAGCTGCAAGAGCATTGGGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR GCA 90 bp | AGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGGCCTCTGTTCTGCAAGGCTTTCACAATGAGCTaGCAGCATACTGAACACTTT | + |
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Preference number: 4 (lower is better) Translates to: RVDVSCLQQEGRWPLFCKAFTMS*QHTEHF Trigger: AAAGTGTTCAGTATGCTGGCAGCTCATTGTGAAAGC...CTTGCAGAACAGAGGCCATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR GCA 90 bp | GCAAAGGGTCCCCTTCACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGCTTTACTGCCAACACTaGAACTGTTATAAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: AKGPLHQSRCVLSPTGRKLYCQH*NCYKKK Trigger: CTTCTTCTTATAACAGTTGCAGTGTTGGCAGTAAAG...CTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTGAAGGGGACCCTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR GCA 90 bp | AAGGGTCCCCTTCACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGCACTTTGCATGTTGCTaGAGTTATGGTGGTAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: KGPLHQSRCVLSPTGRKMHFACC*SYGGSL Trigger: TAAACTACCACCATAACTGCAGCAACATGCAAAGTG...CATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTGAAGGGGACCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR GCA 90 bp | AAGGGTCCCCTTCACCAGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGAATCACTTTGCATGTTaGTGCAGTTATGGTGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: KGPLHQSRCVLSPTGRKMNHFAC*CSYGGS Trigger: ACTACCACCATAACTGCAGCAACATGCAAAGTGATT...CATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCTGGTGAAGGGGACCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR TCA 90 bp | GGAAGGAAGATGGCCTCTGTTCTGCAAGTTAGATACCAGAGAACAGTCCCAATGTGTTCTGTTCTCTGTTaGGGGATTCCAGAAGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GRKMASVLQVRYQRTVPMCSVLC*GIPEVH Trigger: ATGAACTTCTGGAATCCCTCAACAGAGAACAGAACA...CATTGGGACTGTTCTCTGGTATCTAACTTGCAGAACAGAGGCCATCTTCCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR GCA 90 bp | CAGGAAGGAAGATGGCCTCTGTTCTGCAAGTTAGATACCAGAGAACAGTCCCAACTGAAAAATCTTTACTaGCAACACTGCAACTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: QEGRWPLFCKLDTREQSQLKNLY*QHCNCY Trigger: ATAACAGTTGCAGTGTTGGCAGTAAAGATTTTTCAG...TTGGGACTGTTCTCTGGTATCTAACTTGCAGAACAGAGGCCATCTTCCTTCCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS TCA 90 bp | GAAACAGAGGATTCCAAGAGCTTTCACAATGAGCTGCCAGCATACTaGACACTTTCTGTAGCCAGCTTCTCTGGGCCCTTGAGTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: ETEDSKSFHNELPAY*TLSVASFSGPLSLL Trigger: GAGGAGACTCAAGGGCCCAGAGAAGCTGGCTACAGAAAGTGTTCAGTATGCTGGCAGCTCATTGTGAAAGCTCTTGGAATCCTCTGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR CAA 90 bp | AGAGTAGATGTGTCCTGTCTCCAACAGGAAGGAAGATGGCCTCTGTTCTGCAAGGATTCCAGAAGTTCATaGCCTGGCCTAGAGTCTATA | + |
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Preference number: 5 (lower is better) Translates to: RVDVSCLQQEGRWPLFCKDSRSS*PGLESI Trigger: TATAGACTCTAGGCCAGGCAATGAACTTCTGGAATC...CTTGCAGAACAGAGGCCATCTTCCTTCCTGTTGGAGACAGGACACATCTACTCT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS-3UTR CAA 90 bp | CTCTTGCAGCTTTGTCTCTATTCACAGCAGTCTATGTTCTTTAACTTTGGTGGAAGTTTCATGGATTTCTaGGTTGTGTTGACCATACTG | + |
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Preference number: 5 (lower is better) Translates to: LLQLCLYSQQSMFFNFGGSFMDF*VVLTIL Trigger: CAGTATGGTCAACACAACCAAGAAATCCATGAAACT...TCCACCAAAGTTAAAGAACATAGACTGCTGTGAATAGAGACAAAGCTGCAAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS TCA 72 bp | GATTCCAAGAGCTTTCACAATGAGCTGCCAGCATACTaGACACTTTCTGTAGCCAGCTTCTCTGGGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: DSKSFHNELPAY*TLSVASFSGPL Trigger: CAAGGGCCCAGAGAAGCTGGCTACAGAAAGTGTTCAGTATGCTGGCAGCTCATTGTGAAAGCTCTTGGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS CCA 72 bp | GCCAGCATACTGAACACTTTCTGTAGCCAGCTTCTCTaGGCCCTTGAGTCTCCTCATGCCTTACAAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: ASILNTFCSQLL*ALESPHALQVS Trigger: AGAAACTTGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGCTGGCTACAGAAAGTGTTCAGTATGCTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS CAA 72 bp | GTCTTAGTTTCACTGTACCCTCTGTTCTGTTCTCTGTaGAGGGATTCCAGAAGTTCATTGCCTGGCCTAGAG | + |
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Preference number: 6 (lower is better) Translates to: VLVSLYPLFCSL*RDSRSSLPGLE Trigger: CTCTAGGCCAGGCAATGAACTTCTGGAATCCCTCAACAGAGAACAGAACAGAGGGTACAGTGAAACTAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS CAA 90 bp | CTGTACCCTCTGTTCTGTTCTCTGTTGAGGGATTCCAGAAGTTCATaGCCTGGCCTAGAGTCTATAGACCTATTTGTCAACATTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LYPLFCSLLRDSRSS*PGLESIDLFVNISS Trigger: GGAAGAAATGTTGACAAATAGGTCTATAGACTCTAGGCCAGGCAATGAACTTCTGGAATCCCTCAACAGAGAACAGAACAGAGGGTACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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| CDS GCA 72 bp | TTCTTGGTTGTGTTGACCATACTGAAAAATCTTTACTaGCAACACTGCAACTGTTATAAGAAGAAGGAAACA | + |
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Preference number: 6 (lower is better) Translates to: FLVVLTILKNLY*QHCNCYKKKET Trigger: TGTTTCCTTCTTCTTATAACAGTTGCAGTGTTGGCAGTAAAGATTTTTCAGTATGGTCAACACAACCAAGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074056.3 |
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