Pregenerated sensors for KLRA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067591Ensembl transcript IDs: ENSMUST00000088017.5, ENSMUST00000111998.9
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCTGTTCTGTCAAGATAGATAGGAGAGTACAGTCCCAATGTTCTTaGAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACTCTA | + |
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Preference number: 1 (lower is better) Translates to: LCSVKIDRRVQSQCS*SFVSLHRRLCSLTL Trigger: TAGAGTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTATCTATCTTGACAGAACAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| 3UTR-3UTR CAA 90 bp | AGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTAAATGTTCTTGCAGCTTaGTTTCTCTTCACAGGAGAC | + |
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Preference number: 3 (lower is better) Translates to: RRVQSQCSCSFVSLHRRLNVLAA*FLFTGD Trigger: GTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATT...TAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| 3UTR GCA 72 bp | GTCAAGATAGATAGGAGAGTACAGTCCCAATGTTCTTaGAGCTTTGTTTCTCTTCACAGGAGACTATGTTCT | + |
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Preference number: 3 (lower is better) Translates to: VKIDRRVQSQCS*SFVSLHRRLCS Trigger: AGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTATCTATCTTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| 3UTR-3UTR CAA 90 bp | GTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTGTAATACAGTCCCAATGTTCTaGCAGCTTTGTTTCTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: VPMFLQLCFSSQETMFCNTVPMF*QLCFSS Trigger: TGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGT...ATTACAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111998.9 |
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| CDS-3UTR TCA 90 bp | GGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATACTTCTCTGGGCCCTTaGGTCTCCTCATGCCTTACT | + |
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Preference number: 4 (lower is better) Translates to: GEYSPNVLAALFLFTGDYTSLGP*VSSCLT Trigger: AGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGT...ATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR TCA 90 bp | GATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGAACTTCTCTGGGCCCTTaGGTCTCCTCATGCCTTACT | + |
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Preference number: 4 (lower is better) Translates to: DRRVQSQCSCSFVSLHRRTSLGP*VSSCLT Trigger: AGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGT...TCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR TCA 90 bp | AGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTAATGAAGTCTCACAGTTaGGTAAGTGACCTCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: RRVQSQCSCSFVSLHRRLMKSHS*VSDLWL Trigger: GAGCCAGAGGTCACTTACTCAACTGTGAGACTTCAT...TAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR TCA 90 bp | AGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTATGAAGTCTCACAGTTaGGTAAGTGACCTCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: RVQSQCSCSFVSLHRRLCMKSHS*VSDLWL Trigger: GAGCCAGAGGTCACTTACTCAACTGTGAGACTTCAT...ACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | GAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTGAACACTTTCTGTTaGCAACTTCTCTGGGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: EYSPNVLAALFLFTGDYVLNTFC*QLLWAL Trigger: AAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAG...AACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | GGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGCTTTCACAATGAGTTaGCAGGGTGCTGAACACTTT | + |
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Preference number: 4 (lower is better) Translates to: GEYSPNVLAALFLFTGDYAFTMS*QGAEHF Trigger: AAAGTGTTCAGCACCCTGGCAACTCATTGTGAAAGC...ATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | ATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACGCTTTCACAATGAGTTaGCAGGGTGCTGAACACTTT | + |
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Preference number: 4 (lower is better) Translates to: IGEYSPNVLAALFLFTGDAFTMS*QGAEHF Trigger: AAAGTGTTCAGCACCCTGGCAACTCATTGTGAAAGC...GTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | AGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTACCCTTTGCATGTTGCTaGAGTTATGGTGGTGGTTTA | + |
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Preference number: 4 (lower is better) Translates to: RRVQSQCSCSFVSLHRRLPFACC*SYGGGL Trigger: TAAACCACCACCATAACTGCAGCAACATGCAAAGGG...TAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | GGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATCCCTTTGCATGTTGCTaGAGTTATGGTGGTGGTTTA | + |
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Preference number: 4 (lower is better) Translates to: GEYSPNVLAALFLFTGDYPFACC*SYGGGL Trigger: TAAACCACCACCATAACTGCAGCAACATGCAAAGGG...ATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | GTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACCTGAACACTTTCTGTTaGCAACTTCTCTGGGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: VPMFLQLCFSSQETMFFNLNTFC*QLLWAL Trigger: AAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAG...GTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| CDS-3UTR CCA 90 bp | GGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATTTGCTGCAGTTATGGTaGTGGTTTAGAGTTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: GEYSPNVLAALFLFTGDYLLQLW*WFRVSL Trigger: CAATGAAACTCTAAACCACCACCATAACTGCAGCAA...ATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CCA 90 bp | ATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACATGTTGCTGCAGTTATaGTGGTGGTTTAGAGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: IGEYSPNVLAALFLFTGDMLLQL*WWFRVS Trigger: TGAAACTCTAAACCACCACCATAACTGCAGCAACAT...GTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | GAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTACTGCCAACACTaGAACTGTTACAAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: EYSPNVLAALFLFTGDYVLYCQH*NCYKKK Trigger: CTTCTTCTTGTAACAGTTGCAGTGTTGGCAGTAAAG...AACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CCA 90 bp | ATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACCAGAGTTTCATTGCTTaGCCTACAATCTATAGACTT | + |
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Preference number: 4 (lower is better) Translates to: IGEYSPNVLAALFLFTGDQSFIA*PTIYRL Trigger: AAGTCTATAGATTGTAGGCCAAGCAATGAAACTCTG...GTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR GCA 90 bp | AGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTCTGAAAAATCTTTACTaGCAACACTGCAACTGTTAC | + |
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Preference number: 4 (lower is better) Translates to: RVQSQCSCSFVSLHRRLCLKNLY*QHCNCY Trigger: GTAACAGTTGCAGTGTTGGCAGTAAAGATTTTTCAG...ACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CCA 90 bp | GAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTGCAGTTATGGTGGTaGTTTAGAGTTTCATTGATT | + |
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Preference number: 4 (lower is better) Translates to: EYSPNVLAALFLFTGDYVLQLWW*FRVSLI Trigger: AATCAATGAAACTCTAAACCACCACCATAACTGCAG...AACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CCA 90 bp | GTCAAGATAGATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTTTGCTGCAGTTATGGTaGTGGTTTAGAGTTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: VKIDRRVQSQCSCSFVSLLLQLW*WFRVSL Trigger: CAATGAAACTCTAAACCACCACCATAACTGCAGCAA...AAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTATCTATCTTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CCA 90 bp | GAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTAATCCAGTAATTCTCTaGAATAACATGGCGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: EYSPNVLAALFLFTGDYVNPVIL*NNMALK Trigger: CTTCAACGCCATGTTATTCCAGAGAATTACTGGATT...AACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR TCA 90 bp | TTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACTCTAGTTGGTTTCTTCCTTTAAGTTaGAAGCCCTTTGCATGTTGC | + |
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Preference number: 4 (lower is better) Translates to: FLQLCFSSQETMFFNSSWFLPLS*KPFACC Trigger: GCAACATGCAAAGGGCTTTCAACTTAAAGGAAGAAA...CCAACTAGAGTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| CDS-3UTR GCA 90 bp | GTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACCTGAAAAATCTTTACTaGCAACACTGCAACTGTTAC | + |
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Preference number: 4 (lower is better) Translates to: VPMFLQLCFSSQETMFFNLKNLY*QHCNCY Trigger: GTAACAGTTGCAGTGTTGGCAGTAAAGATTTTTCAG...GTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| CDS-3UTR CCA 90 bp | GTCAAGATAGATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTAATCCAGTAATTCTCTaGAATAACATGGCGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: VKIDRRVQSQCSCSFVSLNPVIL*NNMALK Trigger: CTTCAACGCCATGTTATTCCAGAGAATTACTGGATT...AAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTATCTATCTTGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CCA 90 bp | TCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACTCTAGTTGGACTGCAGTTATGGTGGTaGTTTAGAGTTTCATTGATT | + |
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Preference number: 4 (lower is better) Translates to: SCSFVSLHRRLCSLTLVGLQLWW*FRVSLI Trigger: AATCAATGAAACTCTAAACCACCACCATAACTGCAG...TCCAACTAGAGTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| CDS-3UTR CCA 90 bp | TTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACTCTAGTTGGCAGAGTTTCATTGCTTaGCCTACAATCTATAGACTT | + |
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Preference number: 4 (lower is better) Translates to: FLQLCFSSQETMFFNSSWQSFIA*PTIYRL Trigger: AAGTCTATAGATTGTAGGCCAAGCAATGAAACTCTG...CCAACTAGAGTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| CDS TCA 90 bp | TGCCAGGGTGCTGAACACTTTCTGTTGCCAACTTCTCTGGGCCCTTaGGTCTCCTCATGCCTTACTAGTTTCTGCAACCCTGAAGACTTA | + |
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Preference number: 5 (lower is better) Translates to: CQGAEHFLLPTSLGP*VSSCLTSFCNPEDL Trigger: TAAGTCTTCAGGGTTGCAGAAACTAGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS TCA 90 bp | GAAACAGAGGATTCCAAGAGCTTTCACAATGAGTTGCCAGGGTGCTaGACACTTTCTGTTGCCAACTTCTCTGGGCCCTTGAGTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: ETEDSKSFHNELPGC*TLSVANFSGPLSLL Trigger: GAGGAGACTCAAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGCAACTCATTGTGAAAGCTCTTGGAATCCTCTGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS GCA 90 bp | ACAAGAAGAAGGAAACAGAGGATTCCAAGAGCTTTCACAATGAGTTaGCAGGGTGCTGAACACTTTCTGTTGCCAACTTCTCTGGGCCCT | + |
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Preference number: 5 (lower is better) Translates to: TRRRKQRIPRAFTMS*QGAEHFLLPTSLGP Trigger: AGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGCAACTCATTGTGAAAGCTCTTGGAATCCTCTGTTTCCTTCTTCTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS TCA 90 bp | CTGTTACAAGAAGAAGGAAACAGAGGATTCCAAGAGCTTTCACAATaGGTTGCCAGGGTGCTGAACACTTTCTGTTGCCAACTTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LLQEEGNRGFQELSQ*VARVLNTFCCQLLW Trigger: CCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGCAACTCATTGTGAAAGCTCTTGGAATCCTCTGTTTCCTTCTTCTTGTAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CAA 90 bp | GTCAAGATAGATAGGAGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTAACTTCTCTGGGCCCTaGAGTCTCCTCATGCCTTAC | + |
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Preference number: 5 (lower is better) Translates to: VKIDRRVQSQCSCSFVSLNFSGP*SLLMPY Trigger: GTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGTT...AAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCTCCTATCTATCTTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CAA 90 bp | AGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTAAAGCCCTTTGCATGTaGCTGCAGTTATGGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RVQSQCSCSFVSLHRRLCKALCM*LQLWWW Trigger: CCACCACCATAACTGCAGCAACATGCAAAGGGCTTT...ACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CAA 90 bp | AGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTATTCCAGAGTTTCATaGCTTGGCCTACAATCTATA | + |
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Preference number: 5 (lower is better) Translates to: RVQSQCSCSFVSLHRRLCYSRVS*LGLQSI Trigger: TATAGATTGTAGGCCAAGCAATGAAACTCTGGAATA...ACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CAA 90 bp | AGAGTACAGTCCCAATGTTCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTCTGTCCTGTTCTCTTTaGATATATTCCAGAGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: RVQSQCSCSFVSLHRRLCLSCSL*IYSRVS Trigger: TGAAACTCTGGAATATATCAAAAGAGAACAGGACAG...ACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGAACATTGGGACTGTACTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS-3UTR CAA 90 bp | TCTTGCAGCTTTGTTTCTCTTCACAGGAGACTATGTTCTTTAACTCTAGTTGGATATTCCAGAGTTTCATaGCTTGGCCTACAATCTATA | + |
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Preference number: 5 (lower is better) Translates to: SCSFVSLHRRLCSLTLVGYSRVS*LGLQSI Trigger: TATAGATTGTAGGCCAAGCAATGAAACTCTGGAATA...TCCAACTAGAGTTAAAGAACATAGTCTCCTGTGAAGAGAAACAAAGCTGCAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088017.5 |
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| CDS GCA 90 bp | ATAGACTTATTTGTCAACATTTCTTCCTTTAAGTTGAAAGCCCTTTaGATGTTGCTGCAGTTATGGTGGTGGTTTAGAGTTTCATTGATT | + |
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Preference number: 5 (lower is better) Translates to: IDLFVNISSFKLKAL*MLLQLWWWFRVSLI Trigger: AATCAATGAAACTCTAAACCACCACCATAACTGCAGCAACATGCAAAGGGCTTTCAACTTAAAGGAAGAAATGTTGACAAATAAGTCTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CCA 72 bp | GCCAGGGTGCTGAACACTTTCTGTTGCCAACTTCTCTaGGCCCTTGAGTCTCCTCATGCCTTACTAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: ARVLNTFCCQLL*ALESPHALLVS Trigger: AGAAACTAGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS TCA 72 bp | GCTGAACACTTTCTGTTGCCAACTTCTCTGGGCCCTTaGGTCTCCTCATGCCTTACTAGTTTCTGCAACCCT | + |
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Preference number: 6 (lower is better) Translates to: AEHFLLPTSLGP*VSSCLTSFCNP Trigger: AGGGTTGCAGAAACTAGTAAGGCATGAGGAGACTCAAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS TCA 72 bp | GATTCCAAGAGCTTTCACAATGAGTTGCCAGGGTGCTaGACACTTTCTGTTGCCAACTTCTCTGGGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: DSKSFHNELPGC*TLSVANFSGPL Trigger: CAAGGGCCCAGAGAAGTTGGCAACAGAAAGTGTTCAGCACCCTGGCAACTCATTGTGAAAGCTCTTGGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CCA 72 bp | GGAATTTCAGTTCATCTTCATCTTCTATCTTCAGAATaGGAACGCTATAATGCTGGCAGTTCGCTTTACATC | + |
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Preference number: 6 (lower is better) Translates to: GISVHLHLLSSE*ERYNAGSSLYI Trigger: GATGTAAAGCGAACTGCCAGCATTATAGCGTTCCCATTCTGAAGATAGAAGATGAAGATGAACTGAAATTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS GCA 72 bp | TTTGTCAACATTTCTTCCTTTAAGTTGAAAGCCCTTTaGATGTTGCTGCAGTTATGGTGGTGGTTTAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: FVNISSFKLKAL*MLLQLWWWFRV Trigger: AACTCTAAACCACCACCATAACTGCAGCAACATGCAAAGGGCTTTCAACTTAAAGGAAGAAATGTTGACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CCA 72 bp | AAGTTGAAAGCCCTTTGCATGTTGCTGCAGTTATGGTaGTGGTTTAGAGTTTCATTGATTTCTTGTTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: KLKALCMLLQLW*WFRVSLISCLC Trigger: ACACAAACAAGAAATCAATGAAACTCTAAACCACCACCATAACTGCAGCAACATGCAAAGGGCTTTCAACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CAA 90 bp | CTGTCCCATCTGTCCTGTTCTCTTTTGATATATTCCAGAGTTTCATaGCTTGGCCTACAATCTATAGACTTATTTGTCAACATTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSHLSCSLLIYSRVS*LGLQSIDLFVNISS Trigger: GGAAGAAATGTTGACAAATAAGTCTATAGATTGTAGGCCAAGCAATGAAACTCTGGAATATATCAAAAGAGAACAGGACAGATGGGACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CCA 72 bp | TTTAAGTTGAAAGCCCTTTGCATGTTGCTGCAGTTATaGTGGTGGTTTAGAGTTTCATTGATTTCTTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: FKLKALCMLLQL*WWFRVSLISCL Trigger: CAAACAAGAAATCAATGAAACTCTAAACCACCACCATAACTGCAGCAACATGCAAAGGGCTTTCAACTTAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CAA 90 bp | TCTAAAACAGTCTTTGTTTTACTGTCCCATCTGTCCTGTTCTCTTTaGATATATTCCAGAGTTTCATTGCTTGGCCTACAATCTATAGAC | + |
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Preference number: 6 (lower is better) Translates to: SKTVFVLLSHLSCSL*IYSRVSLLGLQSID Trigger: GTCTATAGATTGTAGGCCAAGCAATGAAACTCTGGAATATATCAAAAGAGAACAGGACAGATGGGACAGTAAAACAAAGACTGTTTTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CAA 90 bp | ATCATAAGACAATCCAATCCAGTAATTCTCTGGAATAACATGGCGTaGAAGGAATTTCAGTTCATCTTCATCTTCTATCTTCAGAATGGG | + |
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Preference number: 6 (lower is better) Translates to: IIRQSNPVILWNNMA*KEFQFIFIFYLQNG Trigger: CCCATTCTGAAGATAGAAGATGAAGATGAACTGAAATTCCTTCAACGCCATGTTATTCCAGAGAATTACTGGATTGGATTGTCTTATGAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CAA 72 bp | CTGTCCTGTTCTCTTTTGATATATTCCAGAGTTTCATaGCTTGGCCTACAATCTATAGACTTATTTGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: LSCSLLIYSRVS*LGLQSIDLFVN Trigger: GTTGACAAATAAGTCTATAGATTGTAGGCCAAGCAATGAAACTCTGGAATATATCAAAAGAGAACAGGACAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CAA 72 bp | CAATCCAATCCAGTAATTCTCTGGAATAACATGGCGTaGAAGGAATTTCAGTTCATCTTCATCTTCTATCTT | + |
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Preference number: 6 (lower is better) Translates to: QSNPVILWNNMA*KEFQFIFIFYL Trigger: AAGATAGAAGATGAAGATGAACTGAAATTCCTTCAACGCCATGTTATTCCAGAGAATTACTGGATTGGATTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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| CDS CCA 72 bp | TTTCTTATCATAAGACAATCCAATCCAGTAATTCTCTaGAATAACATGGCGTTGAAGGAATTTCAGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: FLIIRQSNPVIL*NNMALKEFQFI Trigger: GATGAACTGAAATTCCTTCAACGCCATGTTATTCCAGAGAATTACTGGATTGGATTGTCTTATGATAAGAAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088017.5 ENSMUST00000111998.9 |
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