Pregenerated sensors for KLRA17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014543Ensembl transcript IDs: ENSMUST00000014687.11, ENSMUST00000122219.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCAGAGGAGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTaGCACATCAGATTCCAGGGAACATTCCTGACCTCTTCCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: TRGGVSCFHQVGRSL*HIRFQGTFLTSSSS Trigger: AGAGCTGGAAGAGGTCAGGAATGTTCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCTCCTCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| 3UTR CCA 90 bp | TATTTAGCTCTATATGAGTTTAAGAAAGCAGAAAGAGCAGAGTTCTaGAGGTTTGGGGGCAAAGTGTATCCAAAAACCAGAGGAGGTGTG | + |
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Preference number: 1 (lower is better) Translates to: YLALYEFKKAERAEF*RFGGKVYPKTRGGV Trigger: CACACCTCCTCTGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACTCATATAGAGCTAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| 3UTR CAA 90 bp | CTCTATATGAGTTTAAGAAAGCAGAAAGAGCAGAGTTCTGGAGGTTaGGGGGCAAAGTGTATCCAAAAACCAGAGGAGGTGTGTCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: LYMSLRKQKEQSSGG*GAKCIQKPEEVCPV Trigger: AACAGGACACACCTCCTCTGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACTCATATAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| 3UTR GCA 72 bp | GGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTaGCACATCAGATTCCAGGGAACATTCCTGACCTCT | + |
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Preference number: 3 (lower is better) Translates to: GVSCFHQVGRSL*HIRFQGTFLTS Trigger: AGAGGTCAGGAATGTTCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| 3UTR CCA 72 bp | CTATATGAGTTTAAGAAAGCAGAAAGAGCAGAGTTCTaGAGGTTTGGGGGCAAAGTGTATCCAAAAACCAGA | + |
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Preference number: 3 (lower is better) Translates to: LYEFKKAERAEF*RFGGKVYPKTR Trigger: TCTGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACTCATATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | GTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGGGAACGCTATCACAATGAGATaGCAGGGGATAGAGCACTCT | + |
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Preference number: 4 (lower is better) Translates to: VLFPPGRKKPLPHQIPGNAITMR*QGIEHS Trigger: AGAGTGCTCTATCCCCTGGCATCTCATTGTGATAGC...GTTCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CCA 90 bp | AGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCATCCTCAGGCCTCACTTaGTTCTGCAATCCTGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: RCVLFPPGRKKPLPHQIPSSGLT*FCNPED Trigger: ATCTTCAGGATTGCAGAACCAAGTGAGGCCTGAGGA...TGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | GGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGAGGCTTCCACCTGGGTaGTTTGAGGAATTTAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: GVSCFHQVGRSLCHIRFQRLPPG*FEEFKT Trigger: TGTTTTAAATTCCTCAAAGCACCCAGGTGGAAGCCT...CTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CCA 90 bp | CTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGGGAACATTTCCTCAGGCCTCACTTaGTTCTGCAATCCTGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LFPPGRKKPLPHQIPGNISSGLT*FCNPED Trigger: ATCTTCAGGATTGCAGAACCAAGTGAGGCCTGAGGA...AATGTTCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | AGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCATGTCATTTTGCATGGTaGTACAGTTATGGTGGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: RCVLFPPGRKKPLPHQIPCHFAW*YSYGGS Trigger: ACTGCCACCATAACTGTAGCACCATGCAAAATGACA...TGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | AGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAAGGCTTCCACCTGGGTaGTTTGAGGAATTTAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: RCVLFPPGRKKPLPHQIPRLPPG*FEEFKT Trigger: TGTTTTAAATTCCTCAAAGCACCCAGGTGGAAGCCT...TGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR TCA 90 bp | TGCCACATCAGATTCCAGGGAACATTCCTGACCTCTTCCAGCTCTTCCTTCTGTATGAAATCTCACAGTTaGATAAGTGACCTCCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: CHIRFQGTFLTSSSSSFCMKSHS*ISDLLL Trigger: GAGCAGGAGGTCACTTATTCAACTGTGAGATTTCAT...ACAGAAGGAAGAGCTGGAAGAGGTCAGGAATGTTCCCTGGAATCTGATGTGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR TCA 90 bp | GTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGGGATTGGTTCTGCAATCCTaGAGATTTATGAAATCTCAC | + |
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Preference number: 4 (lower is better) Translates to: VSCFHQVGRSLCHIRFQGLVLQS*RFMKSH Trigger: GTGAGATTTCATAAATCTTCAGGATTGCAGAACCAA...TCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR TCA 90 bp | AGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCATCTTCTGTTCTCTGTTaGGGGATTTCAGAAGATCAT | + |
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Preference number: 4 (lower is better) Translates to: RCVLFPPGRKKPLPHQIPSSVLC*GISEDH Trigger: ATGATCTTCTGAAATCCCTCAACAGAGAACAGAAGA...TGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | AAGCAGAAAGAGCAGAGTTCTGGAGGTTTGGGGGCAAAGTGTATCCAAAAACCAGCTATCACAATGAGATaGCAGGGGATAGAGCACTCT | + |
|
Preference number: 4 (lower is better) Translates to: KQKEQSSGGLGAKCIQKPAITMR*QGIEHS Trigger: AGAGTGCTCTATCCCCTGGCATCTCATTGTGATAGC...TGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | TGCCACATCAGATTCCAGGGAACATTCCTGACCTCTTCCAGCTCTTCCTTCTGTTGTCATTTTGCATGGTaGTACAGTTATGGTGGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: CHIRFQGTFLTSSSSSFCCHFAW*YSYGGS Trigger: ACTGCCACCATAACTGTAGCACCATGCAAAATGACA...ACAGAAGGAAGAGCTGGAAGAGGTCAGGAATGTTCCCTGGAATCTGATGTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR TCA 90 bp | AGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCATTGGTTCTGCAATCCTaGAGATTTATGAAATCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: RCVLFPPGRKKPLPHQIPLVLQS*RFMKSH Trigger: GTGAGATTTCATAAATCTTCAGGATTGCAGAACCAA...TGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CCA 90 bp | CCAAAAACCAGAGGAGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCTTCTCACAAATACATaGGTAGACATGTTCACATTT | + |
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Preference number: 4 (lower is better) Translates to: PKTRGGVSCFHQVGRSLCLLTNT*VDMFTF Trigger: AAATGTGAACATGTCTACCCATGTATTTGTGAGAAG...GCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCTCCTCTGGTTTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| 3UTR CAA 72 bp | AGTTTAAGAAAGCAGAAAGAGCAGAGTTCTGGAGGTTaGGGGGCAAAGTGTATCCAAAAACCAGAGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SLRKQKEQSSGG*GAKCIQKPEEV Trigger: CACCTCCTCTGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR TCA 90 bp | TATGAGTTTAAGAAAGCAGAAAGAGCAGAGTTCTGGAGGTTTGGGGGCAAAGTGATGAAATCTCACAGTTaGATAAGTGACCTCCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: YEFKKAERAEFWRFGGKVMKSHS*ISDLLL Trigger: GAGCAGGAGGTCACTTATTCAACTGTGAGATTTCAT...CACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACTCATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR GCA 90 bp | TATGAGTTTAAGAAAGCAGAAAGAGCAGAGTTCTGGAGGTTTGGGGGCAAAGTGGCGTTGATGTCATTTTaGATGGTGCTACAGTTATGG | + |
|
Preference number: 4 (lower is better) Translates to: YEFKKAERAEFWRFGGKVALMSF*MVLQLW Trigger: CCATAACTGTAGCACCATGCAAAATGACATCAACGC...CACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACTCATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CCA 90 bp | TATATGAGTTTAAGAAAGCAGAAAGAGCAGAGTTCTGGAGGTTTGGGGGCAAAGCTTCTCACAAATACATaGGTAGACATGTTCACATTT | + |
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Preference number: 4 (lower is better) Translates to: YMSLRKQKEQSSGGLGAKLLTNT*VDMFTF Trigger: AAATGTGAACATGTCTACCCATGTATTTGTGAGAAG...CTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTTTCTTAAACTCATATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | GTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGGGAGGGATAGAGCACTCTTaGTGGCCAGCTTCTCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: VSCFHQVGRSLCHIRFQGGIEHS*WPASLD Trigger: GTCAAGAGAAGCTGGCCACAAAGAGTGCTCTATCCC...TCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS TCA 90 bp | TGCCAGGGGATAGAGCACTCTTTGTGGCCAGCTTCTCTTGACCCTTaGTTGTCCTCAGGCCTCACTTGGTTCTGCAATCCTGAAGATTTA | + |
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Preference number: 5 (lower is better) Translates to: CQGIEHSLWPASLDP*LSSGLTWFCNPEDL Trigger: TAAATCTTCAGGATTGCAGAACCAAGTGAGGCCTGAGGACAATCAAGGGTCAAGAGAAGCTGGCCACAAAGAGTGCTCTATCCCCTGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS GCA 90 bp | ACCAGAAGAAGGACACAGAGGATTCCAAAAGCTATCACAATGAGATaGCAGGGGATAGAGCACTCTTTGTGGCCAGCTTCTCTTGACCCT | + |
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Preference number: 5 (lower is better) Translates to: TRRRTQRIPKAITMR*QGIEHSLWPASLDP Trigger: AGGGTCAAGAGAAGCTGGCCACAAAGAGTGCTCTATCCCCTGGCATCTCATTGTGATAGCTTTTGGAATCCTCTGTGTCCTTCTTCTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | AAGCAGAAAGAGCAGAGTTCTGGAGGTTTGGGGGCAAAGTGTATCCAAAAACCAGGGATAGAGCACTCTTaGTGGCCAGCTTCTCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: KQKEQSSGGLGAKCIQKPGIEHS*WPASLD Trigger: GTCAAGAGAAGCTGGCCACAAAGAGTGCTCTATCCC...TGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | CCAAAAACCAGAGGAGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCTCTTCTGTTCTCTGTaGAGGGATTTCAGAAGATCA | + |
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Preference number: 5 (lower is better) Translates to: PKTRGGVSCFHQVGRSLCLFCSL*RDFRRS Trigger: TGATCTTCTGAAATCCCTCAACAGAGAACAGAAGAG...GCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCTCCTCTGGTTTTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | GGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGTTCCACCTGGGTGCTTaGAGGAATTTAAAACACTCT | + |
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Preference number: 5 (lower is better) Translates to: GVSCFHQVGRSLCHIRFQFHLGA*RNLKHS Trigger: AGAGTGTTTTAAATTCCTCAAAGCACCCAGGTGGAA...CTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | GGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGATTTCTTCCTTTGCGTaGATGTCATTTTGCATGGTG | + |
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Preference number: 5 (lower is better) Translates to: GVSCFHQVGRSLCHIRFQISSFA*MSFCMV Trigger: CACCATGCAAAATGACATCAACGCAAAGGAAGAAAT...CTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | AGGTGTGTCCTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAATTTCTTCCTTTGCGTaGATGTCATTTTGCATGGTG | + |
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Preference number: 5 (lower is better) Translates to: RCVLFPPGRKKPLPHQIPISSFA*MSFCMV Trigger: CACCATGCAAAATGACATCAACGCAAAGGAAGAAAT...TGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAGGACACACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | CAGATTCCAGGGAACATTCCTGACCTCTTCCAGCTCTTCCTTCTGTTTACACAGTTCCACCTGGGTGCTTaGAGGAATTTAAAACACTCT | + |
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Preference number: 5 (lower is better) Translates to: QIPGNIPDLFQLFLLFTQFHLGA*RNLKHS Trigger: AGAGTGTTTTAAATTCCTCAAAGCACCCAGGTGGAA...CTGTGTAAACAGAAGGAAGAGCTGGAAGAGGTCAGGAATGTTCCCTGGAATCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTCCACCAGGTAGGAAGAAGCCTCTGCCACATCAGATTCCAGGGAACATTTCTCCACTCTTTACATaGTATGTGGACATGTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: LFPPGRKKPLPHQIPGNISPLFT*YVDMFK Trigger: CTTGAACATGTCCACATACAATGTAAAGAGTGGAGA...AATGTTCCCTGGAATCTGATGTGGCAGAGGCTTCTTCCTACCTGGTGGAAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS-3UTR CAA 90 bp | AAGCAGAAAGAGCAGAGTTCTGGAGGTTTGGGGGCAAAGTGTATCCAAAAACCATCTCCACTCTTTACATaGTATGTGGACATGTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: KQKEQSSGGLGAKCIQKPSPLFT*YVDMFK Trigger: CTTGAACATGTCCACATACAATGTAAAGAGTGGAGA...TGGTTTTTGGATACACTTTGCCCCCAAACCTCCAGAACTCTGCTCTTTCTGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS GCA 90 bp | AGAGGCATATTTCTCAGCATTTCTTCCTTTGCGTTGATGTCATTTTaGATGGTGCTACAGTTATGGTGGCAGTTTAGAGTTTCCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: RGIFLSISSFALMSF*MVLQLWWQFRVSCS Trigger: ACTGCAGGAAACTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAAGGAAGAAATGCTGAGAAATATGCCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS TCA 90 bp | TACTACACTCTAGAGGCATATTTCTCAGCATTTCTTCCTTTGCGTTaGTGTCATTTTGCATGGTGCTACAGTTATGGTGGCAGTTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: YYTLEAYFSAFLPLR*CHFAWCYSYGGSLE Trigger: CTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAAGGAAGAAATGCTGAGAAATATGCCTCTAGAGTGTAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS TCA 90 bp | TTAAAACACTCTTGGTTTCACTGTACCATCTCTTCTGTTCTCTGTTaGGGGATTTCAGAAGATCATCTCCTGTACTACACTCTAGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: LKHSWFHCTISSVLC*GISEDHLLYYTLEA Trigger: TGCCTCTAGAGTGTAGTACAGGAGATGATCTTCTGAAATCCCTCAACAGAGAACAGAAGAGATGGTACAGTGAAACCAAGAGTGTTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CCA 90 bp | TCTTCCTTTGCGTTGATGTCATTTTGCATGGTGCTACAGTTATGGTaGCAGTTTAGAGTTTCCTGCAGTTCATGTTTTTCTTGCTTATAC | + |
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Preference number: 5 (lower is better) Translates to: SSFALMSFCMVLQLW*QFRVSCSSCFSCLY Trigger: GTATAAGCAAGAAAAACATGAACTGCAGGAAACTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAAGGAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CCA 90 bp | ATTTCTTCCTTTGCGTTGATGTCATTTTGCATGGTGCTACAGTTATaGTGGCAGTTTAGAGTTTCCTGCAGTTCATGTTTTTCTTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: ISSFALMSFCMVLQL*WQFRVSCSSCFSCL Trigger: TAAGCAAGAAAAACATGAACTGCAGGAAACTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAAGGAAGAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS TCA 72 bp | ATAGAGCACTCTTTGTGGCCAGCTTCTCTTGACCCTTaGTTGTCCTCAGGCCTCACTTGGTTCTGCAATCCT | + |
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Preference number: 6 (lower is better) Translates to: IEHSLWPASLDP*LSSGLTWFCNP Trigger: AGGATTGCAGAACCAAGTGAGGCCTGAGGACAATCAAGGGTCAAGAGAAGCTGGCCACAAAGAGTGCTCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS GCA 72 bp | AGGACACAGAGGATTCCAAAAGCTATCACAATGAGATaGCAGGGGATAGAGCACTCTTTGTGGCCAGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RTQRIPKAITMR*QGIEHSLWPAS Trigger: AGAAGCTGGCCACAAAGAGTGCTCTATCCCCTGGCATCTCATTGTGATAGCTTTTGGAATCCTCTGTGTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CAA 90 bp | ATTTCCAGGCTTCCACCTGGGTGCTTTGAGGAATTTAAAACACTCTaGGTTTCACTGTACCATCTCTTCTGTTCTCTGTTGAGGGATTTC | + |
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Preference number: 6 (lower is better) Translates to: ISRLPPGCFEEFKTL*VSLYHLFCSLLRDF Trigger: GAAATCCCTCAACAGAGAACAGAAGAGATGGTACAGTGAAACCAAGAGTGTTTTAAATTCCTCAAAGCACCCAGGTGGAAGCCTGGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS TCA 72 bp | CTAGAGGCATATTTCTCAGCATTTCTTCCTTTGCGTTaGTGTCATTTTGCATGGTGCTACAGTTATGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: LEAYFSAFLPLR*CHFAWCYSYGG Trigger: GCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAAGGAAGAAATGCTGAGAAATATGCCTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CCA 72 bp | GCGTTGATGTCATTTTGCATGGTGCTACAGTTATGGTaGCAGTTTAGAGTTTCCTGCAGTTCATGTTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: ALMSFCMVLQLW*QFRVSCSSCFS Trigger: AGAAAAACATGAACTGCAGGAAACTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CAA 90 bp | GTACTACACTCTAGAGGCATATTTCTCAGCATTTCTTCCTTTGCGTaGATGTCATTTTGCATGGTGCTACAGTTATGGTGGCAGTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: VLHSRGIFLSISSFA*MSFCMVLQLWWQFR Trigger: TCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAAGGAAGAAATGCTGAGAAATATGCCTCTAGAGTGTAGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CCA 72 bp | TTTGCGTTGATGTCATTTTGCATGGTGCTACAGTTATaGTGGCAGTTTAGAGTTTCCTGCAGTTCATGTTTT | + |
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Preference number: 6 (lower is better) Translates to: FALMSFCMVLQL*WQFRVSCSSCF Trigger: AAAACATGAACTGCAGGAAACTCTAAACTGCCACCATAACTGTAGCACCATGCAAAATGACATCAACGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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| CDS CAA 72 bp | GTTTTAGATAAGAACACACATTCTCCACTCTTTACATaGTATGTGGACATGTTCAAGGCATATTTAGATGTG | + |
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Preference number: 6 (lower is better) Translates to: VLDKNTHSPLFT*YVDMFKAYLDV Trigger: CACATCTAAATATGCCTTGAACATGTCCACATACAATGTAAAGAGTGGAGAATGTGTGTTCTTATCTAAAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014687.11 ENSMUST00000122219.2 |
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