RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLK9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047884

Ensembl transcript IDs: ENSMUST00000005891.7

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGGGTGCTTTGACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTaGAGCATCCTCTCATTCTACATCCGTCTTCCTCTCCAGTCTGTC +
Preference number: 1 (lower is better)
Translates to: GGALTRIREAGALES*SILSFYIRLPLQSV
Trigger: GACAGACTGGAGAGGAAGACGGATGTAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAAAGCACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR TCA 90 bp GAGCTGTTTGAGGTCCACGTGCGCAGAATAGGCGCAGTCCTAGCGTaGCTAGGAGTGGGGACAAATGGGATGGAGTCCAGAGAAGAAATC +
Preference number: 1 (lower is better)
Translates to: ELFEVHVRRIGAVLA*LGVGTNGMESREEI
Trigger: GATTTCTTCTCTGGACTCCATCCCATTTGTCCCCACTCCTAGTCACGCTAGGACTGCGCCTATTCTGCGCACGTGGACCTCAAACAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR-3UTR GCA 90 bp TTCTTGGCGGTGATCCTGAGGGTTGGGCTATTCCAGAGAATGGTGATTAAAATGGGGGCTCTGGAATCCTaGAGCATCCTCTCATTCTAC +
Preference number: 2 (lower is better)
Translates to: FLAVILRVGLFQRMVIKMGALES*SILSFY
Trigger: GTAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCC...CATTTTAATCACCATTCTCTGGAATAGCCCAACCCTCAGGATCACCGCCAAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR-3UTR CCA 90 bp TTCTTGGCGGTGATCCTGAGGGTTGGGCTATTCCAGAGAATGGTGATTAAAATGTATAATTGTTTTGCCTaGGAGCAGACCCCAAGAGGG +
Preference number: 2 (lower is better)
Translates to: FLAVILRVGLFQRMVIKMYNCFA*EQTPRG
Trigger: CCCTCTTGGGGTCTGCTCCCAGGCAAAACAATTATA...CATTTTAATCACCATTCTCTGGAATAGCCCAACCCTCAGGATCACCGCCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR CAA 90 bp GTGAAATATGAAGGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTaGGCGGTGATCCTGAGGGTTGGGCTATTCCAGAGAATGGTGATT +
Preference number: 2 (lower is better)
Translates to: VKYEGLQQLFRERYF*AVILRVGLFQRMVI
Trigger: AATCACCATTCTCTGGAATAGCCCAACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCCTTCATATTTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR TCA 72 bp CCTAAGTGGGAGGAGTCTTCGGGGGAGACTAAGGAGTaGAGTCTGAGGGTCCGAAGTCTGAGAGGGCGGAGT +
Preference number: 3 (lower is better)
Translates to: PKWEESSGETKE*SLRVRSLRGRS
Trigger: ACTCCGCCCTCTCAGACTTCGGACCCTCAGACTTCACTCCTTAGTCTCCCCCGAAGACTCCTCCCACTTAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR CCA 72 bp GGCGTGCGGGGGTGCTTTGACACGCATCAGAGAAGCTaGGGCTCTGGAATCCTGCAGCATCCTCTCATTCTA +
Preference number: 3 (lower is better)
Translates to: GVRGCFDTHQRS*GSGILQHPLIL
Trigger: TAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAAAGCACCCCCGCACGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR GCA 72 bp TTGACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTaGAGCATCCTCTCATTCTACATCCGTCTTCCTCTC +
Preference number: 3 (lower is better)
Translates to: LTRIREAGALES*SILSFYIRLPL
Trigger: GAGAGGAAGACGGATGTAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR-3UTR CAA 90 bp GGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTTTTATTATAATTGTTTaGCCTGGGAGCAGACCCCAA +
Preference number: 3 (lower is better)
Translates to: GLQQLFRERYFLAVILRVFIIIV*PGSRPQ
Trigger: TTGGGGTCTGCTCCCAGGCAAAACAATTATAATAAA...AACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR CCA 72 bp GGACAAATGGGATGGAGTCCAGAGAAGAAATCCTATTaGGTGAAATATGAAGGGTTGCAGCAGCTATTTAGG +
Preference number: 3 (lower is better)
Translates to: GQMGWSPEKKSY*VKYEGLQQLFR
Trigger: CCTAAATAGCTGCTGCAACCCTTCATATTTCACCCAATAGGATTTCTTCTCTGGACTCCATCCCATTTGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR TCA 90 bp GACCCCAAGAGGGAAGATGACCTAAGTGGGAGGAGTCTTCGGGGGAGACTAAGGTCCCACCGCCACAGATaGTGCTCCCCGAGGCGGACC +
Preference number: 4 (lower is better)
Translates to: DPKREDDLSGRSLRGRLRSHRHR*CSPRRT
Trigger: GGTCCGCCTCGGGGAGCATCATCTGTGGCGGTGGGA...CCTTAGTCTCCCCCGAAGACTCCTCCCACTTAGGTCATCTTCCCTCTTGGGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR TCA 90 bp GACCCCAAGAGGGAAGATGACCTAAGTGGGAGGAGTCTTCGGGGGAGACTAAGGCACAGAGCTGCCGGGTaGGGTAGAAGAGGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: DPKREDDLSGRSLRGRLRHRAAG*GRRGQP
Trigger: AGGCTGGCCTCTTCTACCTCACCCGGCAGCTCTGTG...CCTTAGTCTCCCCCGAAGACTCCTCCCACTTAGGTCATCTTCCCTCTTGGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR TCA 90 bp CATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATCCTCTCATTCTACATCCGCCAGCCTGCCAGGGCTaGGAGTTGCGTACGCATTCC +
Preference number: 4 (lower is better)
Translates to: HQRSWGSGILQHPLILHPPACQG*ELRTHS
Trigger: GGAATGCGTACGCAACTCTCAGCCCTGGCAGGCTGG...CGGATGTAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp GGCGTGCGGGGGTGCTTTGACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTGATTGGCAGAGAGATCTaGATTGAACCCAGGATGGGG +
Preference number: 4 (lower is better)
Translates to: GVRGCFDTHQRSWGSGILIGREI*IEPRMG
Trigger: CCCCATCCTGGGTTCAATCCAGATCTCTCTGCCAAT...CAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAAAGCACCCCCGCACGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR GCA 90 bp CATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATCCTCTCATTCTACATCCGGTGAGGTTGAGGGGTTaGACAGCTGGAGTCAGCCGG +
Preference number: 4 (lower is better)
Translates to: HQRSWGSGILQHPLILHPVRLRG*TAGVSR
Trigger: CCGGCTGACTCCAGCTGTGCAACCCCTCAACCTCAC...CGGATGTAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp CGGGGGTGCTTTGACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATGGATTGAACCCAGGATaGGGGAAGAAGTCTGTGACC +
Preference number: 4 (lower is better)
Translates to: RGCFDTHQRSWGSGILQHGLNPG*GKKSVT
Trigger: GGTCACAGACTTCTTCCCCCATCCTGGGTTCAATCC...ATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAAAGCACCCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp CAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTGGGCTACTGGGTGCCCACAGGTaGCCGGCTCTCGGTGAGGTT +
Preference number: 4 (lower is better)
Translates to: QQLFRERYFLAVILRVGLLGAHR*PALGEV
Trigger: AACCTCACCGAGAGCCGGCCACCTGTGGGCACCCAG...TAGCCCAACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp TTCTTGGCGGTGATCCTGAGGGTTGGGCTATTCCAGAGAATGGTGATTAAAATGCCCCCAGAGTCACCCTaGCAAGAGCCTCGGCCACCC +
Preference number: 4 (lower is better)
Translates to: FLAVILRVGLFQRMVIKMPPESP*QEPRPP
Trigger: GGGTGGCCGAGGCTCTTGCCAGGGTGACTCTGGGGG...CATTTTAATCACCATTCTCTGGAATAGCCCAACCCTCAGGATCACCGCCAAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp GGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTCCAGAGATAAGGCACTaGGTGCCCACAGGTGGCCGG +
Preference number: 4 (lower is better)
Translates to: GLQQLFRERYFLAVILRVPEIRH*VPTGGR
Trigger: CCGGCCACCTGTGGGCACCCAGTGCCTTATCTCTGG...AACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR TCA 90 bp GGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTGGGGGAAGAAGTCTGTaGCCAGAAGCAGCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: GLQQLFRERYFLAVILRVGGRSL*PEAAAQ
Trigger: CTGAGCAGCTGCTTCTGGTCACAGACTTCTTCCCCC...AACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR GCA 90 bp GGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTAGCTCCACAGTGGCCTaGCAGCAGAGAGAACAGCAC +
Preference number: 4 (lower is better)
Translates to: GLQQLFRERYFLAVILRVSSTVA*QQREQH
Trigger: GTGCTGTTCTCTCTGCTGGCAGGCCACTGTGGAGCT...AACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR GCA 90 bp GACCCCAAGAGGGAAGATGACCTAAGTGGGAGGAGTCTTCGGGGGAGACTAAGGCTAATGTTGGCACACTaGAGTGTCATTGGATACTGT +
Preference number: 4 (lower is better)
Translates to: DPKREDDLSGRSLRGRLRLMLAH*SVIGYC
Trigger: ACAGTATCCAATGACACTGCAGTGTGCCAACATTAG...CCTTAGTCTCCCCCGAAGACTCCTCCCACTTAGGTCATCTTCCCTCTTGGGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp CAAATGGGATGGAGTCCAGAGAAGAAATCCTATTGGGTGAAATATGAAGGGTTGGTGTCAGCTCCACAGTaGCCTGCCAGCAGAGAGAAC +
Preference number: 4 (lower is better)
Translates to: QMGWSPEKKSYWVKYEGLVSAPQ*PASREN
Trigger: GTTCTCTCTGCTGGCAGGCCACTGTGGAGCTGACAC...CAACCCTTCATATTTCACCCAATAGGATTTCTTCTCTGGACTCCATCCCATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CCA 90 bp CGGGGGTGCTTTGACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATATAATATCATCATTGTaGTCATTGGCAGAGAGATCT +
Preference number: 4 (lower is better)
Translates to: RGCFDTHQRSWGSGILQHIISSL*SLAERS
Trigger: AGATCTCTCTGCCAATGACCACAATGATGATATTAT...ATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAAAGCACCCCCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
3UTR CAA 72 bp GAAGGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTaGGCGGTGATCCTGAGGGTTGGGCTATTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: EGLQQLFRERYF*AVILRVGLFQR
Trigger: TCTCTGGAATAGCCCAACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR TCA 90 bp CAAATGGGATGGAGTCCAGAGAAGAAATCCTATTGGGTGAAATATGAAGGGTTGCAGAGAGATCTGGATTaGACCCAGGATGGGGGAAGA +
Preference number: 4 (lower is better)
Translates to: QMGWSPEKKSYWVKYEGLQRDLD*TQDGGR
Trigger: TCTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTG...CAACCCTTCATATTTCACCCAATAGGATTTCTTCTCTGGACTCCATCCCATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS GCA 90 bp CACTGGGTGCCCACAGGTGGCCGGCTCTCGGTGAGGTTGAGGGGTTaGACAGCTGGAGTCAGCCGGACCTTCCGAGGTAGCCGGATCAGC +
Preference number: 5 (lower is better)
Translates to: HWVPTGGRLSVRLRG*TAGVSRTFRGSRIS
Trigger: GCTGATCCGGCTACCTCGGAAGGTCCGGCTGACTCCAGCTGTGCAACCCCTCAACCTCACCGAGAGCCGGCCACCTGTGGGCACCCAGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 90 bp CGGCCACCCTCCCACAGGCCAGCGCACAGCATCTTCTCAGAGATGTaGCCCGGGTATGCCCAGCGGCAGAGCTTGTTGTCCAGAATGCTA +
Preference number: 5 (lower is better)
Translates to: RPPSHRPAHSIFSEM*PGYAQRQSLLSRML
Trigger: TAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTCTGAGAAGATGCTGTGCGCTGGCCTGTGGGAGGGTGGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp GACCCCAAGAGGGAAGATGACCTAAGTGGGAGGAGTCTTCGGGGGAGACTAAGGGGTGAGGTTGAGGGGTaGCACAGCTGGAGTCAGCCG +
Preference number: 5 (lower is better)
Translates to: DPKREDDLSGRSLRGRLRGEVEG*HSWSQP
Trigger: CGGCTGACTCCAGCTGTGCAACCCCTCAACCTCACC...CCTTAGTCTCCCCCGAAGACTCCTCCCACTTAGGTCATCTTCCCTCTTGGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS GCA 90 bp CCACAGGCCAGCGCACAGCATCTTCTCAGAGATGTGGCCCGGGTATaGCCAGCGGCAGAGCTTGTTGTCCAGAATGCTAATGTTGGCACA +
Preference number: 5 (lower is better)
Translates to: PQASAQHLLRDVARV*PAAELVVQNANVGT
Trigger: TGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTCTGAGAAGATGCTGTGCGCTGGCCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 90 bp TCATCATTGTGGTCATTGGCAGAGAGATCTGGATTGAACCCAGGATaGGGGAAGAAGTCTGTGACCAGAAGCAGCTGCTCAGGGCCCTCC +
Preference number: 5 (lower is better)
Translates to: SSLWSLAERSGLNPG*GKKSVTRSSCSGPS
Trigger: GGAGGGCCCTGAGCAGCTGCTTCTGGTCACAGACTTCTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTGCCAATGACCACAATGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp CATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATCCTCTCATTCTACATCCGGCAGAGAGATCTGGATaGAACCCAGGATGGGGGAAG +
Preference number: 5 (lower is better)
Translates to: HQRSWGSGILQHPLILHPAERSG*NPGWGK
Trigger: CTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTGC...CGGATGTAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp GGCGTGCGGGGGTGCTTTGACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTGAGCATAATATCATCATaGTGGTCATTGGCAGAGAGA +
Preference number: 5 (lower is better)
Translates to: GVRGCFDTHQRSWGSGILSIISS*WSLAER
Trigger: TCTCTCTGCCAATGACCACAATGATGATATTATGCT...CAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTCAAAGCACCCCCGCACGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp GACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATCCTCTCATTCTAACTGTAATTTGGAGCTaGACACACTGCCCCAGCCAG +
Preference number: 5 (lower is better)
Translates to: DTHQRSWGSGILQHPLILTVIWS*THCPSQ
Trigger: CTGGCTGGGGCAGTGTGTCAAGCTCCAAATTACAGT...TAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 90 bp AGCCGGACCTTCCGAGGTAGCCGGATCAGCATAATATCATCATTGTaGTCATTGGCAGAGAGATCTGGATTGAACCCAGGATGGGGGAAG +
Preference number: 5 (lower is better)
Translates to: SRTFRGSRISIISSL*SLAERSGLNPGWGK
Trigger: CTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTGCCAATGACCACAATGATGATATTATGCTGATCCGGCTACCTCGGAAGGTCCGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp GACCCCAAGAGGGAAGATGACCTAAGTGGGAGGAGTCTTCGGGGGAGACTAAGGTCCAGAATGCTAATGTaGGCACACTGCAGTGTCATT +
Preference number: 5 (lower is better)
Translates to: DPKREDDLSGRSLRGRLRSRMLM*AHCSVI
Trigger: AATGACACTGCAGTGTGCCAACATTAGCATTCTGGA...CCTTAGTCTCCCCCGAAGACTCCTCCCACTTAGGTCATCTTCCCTCTTGGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp GACACGCATCAGAGAAGCTGGGGCTCTGGAATCCTGCAGCATCCTCTCATTCTACAGCGGCAGAGCTTGTaGTCCAGAATGCTAATGTTG +
Preference number: 5 (lower is better)
Translates to: DTHQRSWGSGILQHPLILQRQSL*SRMLML
Trigger: CAACATTAGCATTCTGGACAACAAGCTCTGCCGCTG...TAGAATGAGAGGATGCTGCAGGATTCCAGAGCCCCAGCTTCTCTGATGCGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS GCA 90 bp GCCCAGCGGCAGAGCTTGTTGTCCAGAATGCTAATGTTGGCACACTaGAGTGTCATTGGATACTGTAATTTGGAGCTTGACACACTGCCC +
Preference number: 5 (lower is better)
Translates to: AQRQSLLSRMLMLAH*SVIGYCNLELDTLP
Trigger: GGGCAGTGTGTCAAGCTCCAAATTACAGTATCCAATGACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp CAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTGGGCTAAGCTGTGAGCAGCCATaGATCATTGATGAGCGTGGC +
Preference number: 5 (lower is better)
Translates to: QQLFRERYFLAVILRVGLSCEQP*IIDERG
Trigger: GCCACGCTCATCAATGATCAATGGCTGCTCACAGCT...TAGCCCAACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp TTCTTGGCGGTGATCCTGAGGGTTGGGCTATTCCAGAGAATGGTGATTAAAATGGCCCAGCGGCAGAGCTaGTTGTCCAGAATGCTAATG +
Preference number: 5 (lower is better)
Translates to: FLAVILRVGLFQRMVIKMAQRQS*LSRMLM
Trigger: CATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGC...CATTTTAATCACCATTCTCTGGAATAGCCCAACCCTCAGGATCACCGCCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 90 bp CCGGATCAGCATAATATCATCATTGTGGTCATTGGCAGAGAGATCTaGATTGAACCCAGGATGGGGGAAGAAGTCTGTGACCAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: PDQHNIIIVVIGREI*IEPRMGEEVCDQKQ
Trigger: CTGCTTCTGGTCACAGACTTCTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTGCCAATGACCACAATGATGATATTATGCTGATCCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp GGGTTGCAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTTCATCATTGTGGTCATaGGCAGAGAGATCTGGATTG +
Preference number: 5 (lower is better)
Translates to: GLQQLFRERYFLAVILRVSSLWS*AERSGL
Trigger: CAATCCAGATCTCTCTGCCAATGACCACAATGATGA...AACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTGCAACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS-3UTR CAA 90 bp CAGCAGCTATTTAGGGAAAGATATTTCTTGGCGGTGATCCTGAGGGTTGGGCTAATTGGATACTGTAATTaGGAGCTTGACACACTGCCC +
Preference number: 5 (lower is better)
Translates to: QQLFRERYFLAVILRVGLIGYCN*ELDTLP
Trigger: GGGCAGTGTGTCAAGCTCCAAATTACAGTATCCAAT...TAGCCCAACCCTCAGGATCACCGCCAAGAAATATCTTTCCCTAAATAGCTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 72 bp TCCCGGGCTCCGACGGCACGGGTGTCAGCTCCACAGTaGCCTGCCAGCAGAGAGAACAGCACCAAGGTGAGT +
Preference number: 6 (lower is better)
Translates to: SRAPTARVSAPQ*PASRENSTKVS
Trigger: ACTCACCTTGGTGCTGTTCTCTCTGCTGGCAGGCCACTGTGGAGCTGACACCCGTGCCGTCGGAGCCCGGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 72 bp TCCCACAGGCCAGCGCACAGCATCTTCTCAGAGATGTaGCCCGGGTATGCCCAGCGGCAGAGCTTGTTGTCC +
Preference number: 6 (lower is better)
Translates to: SHRPAHSIFSEM*PGYAQRQSLLS
Trigger: GGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTCTGAGAAGATGCTGTGCGCTGGCCTGTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 72 bp GAGATGTGGCCCGGGTATGCCCAGCGGCAGAGCTTGTaGTCCAGAATGCTAATGTTGGCACACTGCAGTGTC +
Preference number: 6 (lower is better)
Translates to: EMWPGYAQRQSL*SRMLMLAHCSV
Trigger: GACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 72 bp TCAGAGATGTGGCCCGGGTATGCCCAGCGGCAGAGCTaGTTGTCCAGAATGCTAATGTTGGCACACTGCAGT +
Preference number: 6 (lower is better)
Translates to: SEMWPGYAQRQS*LSRMLMLAHCS
Trigger: ACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 90 bp AGCATCTTCTCAGAGATGTGGCCCGGGTATGCCCAGCGGCAGAGCTaGTTGTCCAGAATGCTAATGTTGGCACACTGCAGTGTCATTGGA +
Preference number: 6 (lower is better)
Translates to: SIFSEMWPGYAQRQS*LSRMLMLAHCSVIG
Trigger: TCCAATGACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTCTGAGAAGATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 90 bp ATCTTCTCAGAGATGTGGCCCGGGTATGCCCAGCGGCAGAGCTTGTaGTCCAGAATGCTAATGTTGGCACACTGCAGTGTCATTGGATAC +
Preference number: 6 (lower is better)
Translates to: IFSEMWPGYAQRQSL*SRMLMLAHCSVIGY
Trigger: GTATCCAATGACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGGCCACATCTCTGAGAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 90 bp CCCGGGTATGCCCAGCGGCAGAGCTTGTTGTCCAGAATGCTAATGTaGGCACACTGCAGTGTCATTGGATACTGTAATTTGGAGCTTGAC +
Preference number: 6 (lower is better)
Translates to: PGYAQRQSLLSRMLM*AHCSVIGYCNLELD
Trigger: GTCAAGCTCCAAATTACAGTATCCAATGACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGCATACCCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 90 bp ACCTTCCGAGGTAGCCGGATCAGCATAATATCATCATTGTGGTCATaGGCAGAGAGATCTGGATTGAACCCAGGATGGGGGAAGAAGTCT +
Preference number: 6 (lower is better)
Translates to: TFRGSRISIISSLWS*AERSGLNPGWGKKS
Trigger: AGACTTCTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTGCCAATGACCACAATGATGATATTATGCTGATCCGGCTACCTCGGAAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 72 bp ATGTTGGCACACTGCAGTGTCATTGGATACTGTAATTaGGAGCTTGACACACTGCCCCAGCCAGAGATAAGG +
Preference number: 6 (lower is better)
Translates to: MLAHCSVIGYCN*ELDTLPQPEIR
Trigger: CCTTATCTCTGGCTGGGGCAGTGTGTCAAGCTCCAAATTACAGTATCCAATGACACTGCAGTGTGCCAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 72 bp GCCCAGCGGCAGAGCTTGTTGTCCAGAATGCTAATGTaGGCACACTGCAGTGTCATTGGATACTGTAATTTG +
Preference number: 6 (lower is better)
Translates to: AQRQSLLSRMLM*AHCSVIGYCNL
Trigger: CAAATTACAGTATCCAATGACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTGCCGCTGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CAA 90 bp ATCAGCATAATATCATCATTGTGGTCATTGGCAGAGAGATCTGGATaGAACCCAGGATGGGGGAAGAAGTCTGTGACCAGAAGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: ISIISSLWSLAERSG*NPGWGKKSVTRSSC
Trigger: GCAGCTGCTTCTGGTCACAGACTTCTTCCCCCATCCTGGGTTCAATCCAGATCTCTCTGCCAATGACCACAATGATGATATTATGCTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS CCA 72 bp TTCCGAGGTAGCCGGATCAGCATAATATCATCATTGTaGTCATTGGCAGAGAGATCTGGATTGAACCCAGGA +
Preference number: 6 (lower is better)
Translates to: FRGSRISIISSL*SLAERSGLNPG
Trigger: TCCTGGGTTCAATCCAGATCTCTCTGCCAATGACCACAATGATGATATTATGCTGATCCGGCTACCTCGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7
CDS GCA 72 bp CAGAGCTTGTTGTCCAGAATGCTAATGTTGGCACACTaGAGTGTCATTGGATACTGTAATTTGGAGCTTGAC +
Preference number: 6 (lower is better)
Translates to: QSLLSRMLMLAH*SVIGYCNLELD
Trigger: GTCAAGCTCCAAATTACAGTATCCAATGACACTGCAGTGTGCCAACATTAGCATTCTGGACAACAAGCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005891.7