RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLK7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030713

Ensembl transcript IDs: ENSMUST00000032955.7

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACCACTTTCCAATAAAGGACTGTAGGAATCCCTGGCTCTTGTATTaGAAAGCTTTAGCCTTCTGGCATCTTCCACAGCCCTCAGGTTTC +
Preference number: 1 (lower is better)
Translates to: NHFPIKDCRNPWLLY*KALAFWHLPQPSGF
Trigger: GAAACCTGAGGGCTGTGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCTACAGTCCTTTATTGGAAAGTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR TCA 90 bp CCACCATCGTGGCTCCCAGCTTCCCCAACGTTACCTTCCAGGTTATaGGCACACACATCAATATCACTTAGATTTTATTCTGTCTCACTA +
Preference number: 1 (lower is better)
Translates to: PPSWLPASPTLPSRL*AHTSISLRFYSVSL
Trigger: TAGTGAGACAGAATAAAATCTAAGTGATATTGATGTGTGTGCTCATAACCTGGAAGGTAACGTTGGGGAAGCTGGGAGCCACGATGGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 90 bp CTCACAGTTACCAACCACTTTCCAATAAAGGACTGTAGGAATCCCTaGCTCTTGTATTGGAAAGCTTTAGCCTTCTGGCATCTTCCACAG +
Preference number: 1 (lower is better)
Translates to: LTVTNHFPIKDCRNP*LLYWKALAFWHLPQ
Trigger: CTGTGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCTACAGTCCTTTATTGGAAAGTGGTTGGTAACTGTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR GCA 90 bp TTAGCCTTCTGGCATCTTCCACAGCCCTCAGGTTTCTTAGTCTCTTaGCTTGATTTGCTTTTAGGTCTCTGGGGTTCTGATTGGTTTATA +
Preference number: 1 (lower is better)
Translates to: LAFWHLPQPSGFLVS*LDLLLGLWGSDWFI
Trigger: TATAAACCAATCAGAACCCCAGAGACCTAAAAGCAAATCAAGGCAAGAGACTAAGAAACCTGAGGGCTGTGGAAGATGCCAGAAGGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 90 bp ACATCAATATCACTTAGATTTTATTCTGTCTCACTAGTATTCATTTaGCATGTTCAGCCCACGTCCCCATTAAACACCACACAACAACAG +
Preference number: 1 (lower is better)
Translates to: TSISLRFYSVSLVFI*HVQPTSPLNTTQQQ
Trigger: CTGTTGTTGTGTGGTGTTTAATGGGGACGTGGGCTGAACATGCCAAATGAATACTAGTGAGACAGAATAAAATCTAAGTGATATTGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR TCA 90 bp GCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGACTCTGCAGAAATGGATaGCCTGAGTCCAAGGCAGTG +
Preference number: 2 (lower is better)
Translates to: ASIFVCRDTCAPAHLEVRLCRNG*PESKAV
Trigger: CACTGCCTTGGACTCAGGTCATCCATTTCTGCAGAG...TCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR CCA 90 bp GCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGCGTGCGCCTAGTGTTGAGGTTTaGCTATGTCCTGGAGGAAAG +
Preference number: 2 (lower is better)
Translates to: AGTLVPQHTWRSEDNKRAPSVEV*LCPGGK
Trigger: CTTTCCTCCAGGACATAGCCAAACCTCAACACTAGG...CGCACGCTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR CCA 90 bp TTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGGGTTTGGCTATGTCCTaGAGGAAAGGTAAAGCCAGG +
Preference number: 2 (lower is better)
Translates to: LCAGTLVPQHTWRSEDNKGLAMS*RKGKAR
Trigger: CCTGGCTTTACCTTTCCTCCAGGACATAGCCAAACC...CTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR TCA 90 bp TGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGCGTCTTAGTCTCTTGCCTTaGTTTGCTTTTAGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: CAGTLVPQHTWRSEDNKRLSLLP*FAFRSL
Trigger: CAGAGACCTAAAAGCAAATCAAGGCAAGAGACTAAG...ACGCTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR TCA 90 bp GCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGATTACCTTCCAGGTTATaGGCACACACATCAATATCA +
Preference number: 2 (lower is better)
Translates to: ASIFVCRDTCAPAHLEVRLPSRL*AHTSIS
Trigger: TGATATTGATGTGTGTGCTCATAACCTGGAAGGTAA...TCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR CCA 90 bp ATGGATGACCTGAGTCCAAGGCAGTGGATGAAGGTCTCACAGTTACCAACCACTAAAGCTTTAGCCTTCTaGCATCTTCCACAGCCCTCA +
Preference number: 2 (lower is better)
Translates to: MDDLSPRQWMKVSQLPTTKALAF*HLPQPS
Trigger: TGAGGGCTGTGGAAGATGCCAGAAGGCTAAAGCTTT...AGTGGTTGGTAACTGTGAGACCTTCATCCACTGCCTTGGACTCAGGTCATCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CAA 90 bp GTTACCAACCACTTTCCAATAAAGGACTGTAGGAATCCCTGGCTCTaGTATTGGAAAGCTTTAGCCTTCTGGCATCTTCCACAGCCCTCA +
Preference number: 2 (lower is better)
Translates to: VTNHFPIKDCRNPWL*YWKALAFWHLPQPS
Trigger: TGAGGGCTGTGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCTACAGTCCTTTATTGGAAAGTGGTTGGTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR GCA 90 bp TTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGGGTTTCTTAGTCTCTTaGCTTGATTTGCTTTTAGGT +
Preference number: 2 (lower is better)
Translates to: LCAGTLVPQHTWRSEDNKGFLVS*LDLLLG
Trigger: ACCTAAAAGCAAATCAAGGCAAGAGACTAAGAAACC...CTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR CCA 90 bp CAGTCTCTCTTGCATAAGGCTAAGCAGTACACCTTAAGCAACTTCACAACTTCACCCTGGCTCTTGTATTaGAAAGCTTTAGCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: QSLLHKAKQYTLSNFTTSPWLLY*KALAFW
Trigger: CCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGG...TGAAGTTGTGAAGTTGCTTAAGGTGTACTGCTTAGCCTTATGCAAGAGAGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CAA 90 bp TGGCATCTTCCACAGCCCTCAGGTTTCTTAGTCTCTTGCCTTGATTaGCTTTTAGGTCTCTGGGGTTCTGATTGGTTTATAAACTTAACC +
Preference number: 2 (lower is better)
Translates to: WHLPQPSGFLVSCLD*LLGLWGSDWFINLT
Trigger: GGTTAAGTTTATAAACCAATCAGAACCCCAGAGACCTAAAAGCAAATCAAGGCAAGAGACTAAGAAACCTGAGGGCTGTGGAAGATGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR CAA 90 bp GCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGCGTGCGAGGAATCCCTGGCTCTaGTATTGGAAAGCTTTAGCC +
Preference number: 3 (lower is better)
Translates to: AGTLVPQHTWRSEDNKRARNPWL*YWKALA
Trigger: GGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCT...CGCACGCTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 72 bp CAACTCTTCTTCATAGATCTCCTCCCTCCACCATCGTaGCTCCCAGCTTCCCCAACGTTACCTTCCAGGTTA +
Preference number: 3 (lower is better)
Translates to: QLFFIDLLPPPS*LPASPTLPSRL
Trigger: TAACCTGGAAGGTAACGTTGGGGAAGCTGGGAGCCACGATGGTGGAGGGAGGAGATCTATGAAGAAGAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR-3UTR CAA 90 bp TTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGTCCCTGGCTCTTGTATaGGAAAGCTTTAGCCTTCTG +
Preference number: 3 (lower is better)
Translates to: LCAGTLVPQHTWRSEDNKSLALV*ESFSLL
Trigger: CAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGA...CTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 72 bp CCAATAAAGGACTGTAGGAATCCCTGGCTCTTGTATTaGAAAGCTTTAGCCTTCTGGCATCTTCCACAGCCC +
Preference number: 3 (lower is better)
Translates to: PIKDCRNPWLLY*KALAFWHLPQP
Trigger: GGGCTGTGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCTACAGTCCTTTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR GCA 72 bp TGGCATCTTCCACAGCCCTCAGGTTTCTTAGTCTCTTaGCTTGATTTGCTTTTAGGTCTCTGGGGTTCTGAT +
Preference number: 3 (lower is better)
Translates to: WHLPQPSGFLVS*LDLLLGLWGSD
Trigger: ATCAGAACCCCAGAGACCTAAAAGCAAATCAAGGCAAGAGACTAAGAAACCTGAGGGCTGTGGAAGATGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 72 bp AACTCTGCAGAAATGGATGACCTGAGTCCAAGGCAGTaGATGAAGGTCTCACAGTTACCAACCACTTTCCAA +
Preference number: 3 (lower is better)
Translates to: NSAEMDDLSPRQ*MKVSQLPTTFQ
Trigger: TTGGAAAGTGGTTGGTAACTGTGAGACCTTCATCCACTGCCTTGGACTCAGGTCATCCATTTCTGCAGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 72 bp TGGCAGCAAGTACCTTTATCCACTGAGCCATCTTGCTaGCCTAGCTACAATTTCTTAGCCAACTCTTCTTCA +
Preference number: 3 (lower is better)
Translates to: WQQVPLSTEPSC*PSYNFLANSSS
Trigger: TGAAGAAGAGTTGGCTAAGAAATTGTAGCTAGGCCAGCAAGATGGCTCAGTGGATAAAGGTACTTGCTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 72 bp ACCAACCACTTTCCAATAAAGGACTGTAGGAATCCCTaGCTCTTGTATTGGAAAGCTTTAGCCTTCTGGCAT +
Preference number: 3 (lower is better)
Translates to: TNHFPIKDCRNP*LLYWKALAFWH
Trigger: ATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCTACAGTCCTTTATTGGAAAGTGGTTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR TCA 72 bp TGGCTCCCAGCTTCCCCAACGTTACCTTCCAGGTTATaGGCACACACATCAATATCACTTAGATTTTATTCT +
Preference number: 3 (lower is better)
Translates to: WLPASPTLPSRL*AHTSISLRFYS
Trigger: AGAATAAAATCTAAGTGATATTGATGTGTGTGCTCATAACCTGGAAGGTAACGTTGGGGAAGCTGGGAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CCA 72 bp TCACTTAGATTTTATTCTGTCTCACTAGTATTCATTTaGCATGTTCAGCCCACGTCCCCATTAAACACCACA +
Preference number: 3 (lower is better)
Translates to: SLRFYSVSLVFI*HVQPTSPLNTT
Trigger: TGTGGTGTTTAATGGGGACGTGGGCTGAACATGCCAAATGAATACTAGTGAGACAGAATAAAATCTAAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR GCA 90 bp GCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGACTGGGCTGGTTGTGGTaGCCCATCCAGAGACGGTAC +
Preference number: 4 (lower is better)
Translates to: ASIFVCRDTCAPAHLEVRLGWLW*PIQRRY
Trigger: GTACCGTCTCTGGATGGGGCACCACAACCAGCCCAG...TCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CCA 90 bp GCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGGAAAGGTCACGTCTaGGCTGGTTGTGGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: ASIFVCRDTCAPAHLEVRGKGHV*AGCGAP
Trigger: TGGGGCACCACAACCAGCCCAGACGTGACCTTTCCC...TCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR GCA 90 bp GCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGCCACCTGCCATGGGTaGGAGCCTTCTTTACATTTG +
Preference number: 4 (lower is better)
Translates to: ASIFVCRDTCAPAHLEVRATCHG*EPSLHL
Trigger: CAAATGTAAAGAAGGCTCGCACCCATGGCAGGTGGC...TCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CCA 90 bp TCTGGTTTGGCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGTGCCAGCACACAGCATaGTTTTCCCCAGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: SGLASIFVCRDTCAPAHLCQHTA*FSPAGP
Trigger: AGGACCTGCTGGGGAAAACCATGCTGTGTGCTGGCA...CAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGCCAAACCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR TCA 90 bp CCTAGTGTTGAGGTTTGGCTATGTCCTGGAGGAAAGGTAAAGCCAGGCAGGACTTGCAGTGGGCTGCTGTaGGCACCCAGTATTTGTCCA +
Preference number: 4 (lower is better)
Translates to: PSVEVWLCPGGKVKPGRTCSGLL*APSICP
Trigger: TGGACAAATACTGGGTGCTCACAGCAGCCCACTGCA...AGTCCTGCCTGGCTTTACCTTTCCTCCAGGACATAGCCAAACCTCAACACTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR TCA 90 bp CCTAGTGTTGAGGTTTGGCTATGTCCTGGAGGAAAGGTAAAGCCAGGCAGGACTACTCCCTGGAGGAGATaGGCTTCACATCCGAGCACA +
Preference number: 4 (lower is better)
Translates to: PSVEVWLCPGGKVKPGRTTPWRR*ASHPST
Trigger: TGTGCTCGGATGTGAAGCTCATCTCCTCCAGGGAGT...AGTCCTGCCTGGCTTTACCTTTCCTCCAGGACATAGCCAAACCTCAACACTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CCA 90 bp TCTGGTTTGGCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGCAGTGTTCAGGAAGCTaGACTGCCTCCACTTTGGAT +
Preference number: 4 (lower is better)
Translates to: SGLASIFVCRDTCAPAHLQCSGS*TASTLD
Trigger: ATCCAAAGTGGAGGCAGTCCAGCTTCCTGAACACTG...CAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGCCAAACCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CCA 90 bp CAGTCTCTCTTGCATAAGGCTAAGCAGTACACCTTAAGCAACTTCACAACTTCACGTCTGGGCTGGTTGTaGTGCCCCATCCAGAGACGG +
Preference number: 4 (lower is better)
Translates to: QSLLHKAKQYTLSNFTTSRLGWL*CPIQRR
Trigger: CCGTCTCTGGATGGGGCACCACAACCAGCCCAGACG...TGAAGTTGTGAAGTTGCTTAAGGTGTACTGCTTAGCCTTATGCAAGAGAGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CCA 90 bp TGGCTCTTGTATTGGAAAGCTTTAGCCTTCTGGCATCTTCCACAGCCCTCAGGTAGCGATGGGTTTTCATaGTCTCCATCACCCACCGTT +
Preference number: 4 (lower is better)
Translates to: WLLYWKALAFWHLPQPSGSDGFS*SPSPTV
Trigger: AACGGTGGGTGATGGAGACCATGAAAACCCATCGCT...ACCTGAGGGCTGTGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR TCA 90 bp AAGGCAGTGGATGAAGGTCTCACAGTTACCAACCACTTTCCAATAAAGGACTGTGAAGCTGATTGCCTTTaGGCAGAGCCACCTGCCATG +
Preference number: 4 (lower is better)
Translates to: KAVDEGLTVTNHFPIKDCEADCL*AEPPAM
Trigger: CATGGCAGGTGGCTCTGCTCAAAGGCAATCAGCTTC...ACAGTCCTTTATTGGAAAGTGGTTGGTAACTGTGAGACCTTCATCCACTGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CCA 90 bp CAGTCTCTCTTGCATAAGGCTAAGCAGTACACCTTAAGCAACTTCACAACTTCACAGGACACCAGACCTTaGAGGGTGTCGTTGCACACC +
Preference number: 4 (lower is better)
Translates to: QSLLHKAKQYTLSNFTTSQDTRP*RVSLHT
Trigger: GGTGTGCAACGACACCCTCCAAGGTCTGGTGTCCTG...TGAAGTTGTGAAGTTGCTTAAGGTGTACTGCTTAGCCTTATGCAAGAGAGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
3UTR CAA 72 bp CACTTTCCAATAAAGGACTGTAGGAATCCCTGGCTCTaGTATTGGAAAGCTTTAGCCTTCTGGCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: HFPIKDCRNPWL*YWKALAFWHLP
Trigger: TGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCAGGGATTCCTACAGTCCTTTATTGGAAAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS TCA 90 bp GGTCACGTCTGGGCTGGTTGTGGTGCCCCATCCAGAGACGGTACATaGCGTCCCTGGGGGTTCACAGTGTTCAGGAAGCTGGACTGCCTC +
Preference number: 5 (lower is better)
Translates to: GHVWAGCGAPSRDGT*RPWGFTVFRKLDCL
Trigger: GAGGCAGTCCAGCTTCCTGAACACTGTGAACCCCCAGGGACGTCATGTACCGTCTCTGGATGGGGCACCACAACCAGCCCAGACGTGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CAA 90 bp TCTGGTTTGGCGTCCATATTTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGCCAGGACACCAGACCTaGGAGGGTGTCGTTGCACAC +
Preference number: 5 (lower is better)
Translates to: SGLASIFVCRDTCAPAHLPGHQT*EGVVAH
Trigger: GTGTGCAACGACACCCTCCAAGGTCTGGTGTCCTGG...CAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAAATATGGACGCCAAACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CCA 90 bp GAGACGGTACATGACGTCCCTGGGGGTTCACAGTGTTCAGGAAGCTaGACTGCCTCCACTTTGGATGACATCTTGACTGGCTCATCCAAC +
Preference number: 5 (lower is better)
Translates to: ETVHDVPGGSQCSGS*TASTLDDILTGSSN
Trigger: GTTGGATGAGCCAGTCAAGATGTCATCCAAAGTGGAGGCAGTCCAGCTTCCTGAACACTGTGAACCCCCAGGGACGTCATGTACCGTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CAA 90 bp TGGCTCTTGTATTGGAAAGCTTTAGCCTTCTGGCATCTTCCACAGCCCTCAGGTTCACGTCTGGGCTGGTaGTGGTGCCCCATCCAGAGA +
Preference number: 5 (lower is better)
Translates to: WLLYWKALAFWHLPQPSGSRLGW*WCPIQR
Trigger: TCTCTGGATGGGGCACCACAACCAGCCCAGACGTGA...ACCTGAGGGCTGTGGAAGATGCCAGAAGGCTAAAGCTTTCCAATACAAGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CAA 90 bp TTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGTCCTTGTACACCTTCTaGCACTCCCTGGAGGAGATG +
Preference number: 5 (lower is better)
Translates to: LCAGTLVPQHTWRSEDNKSLYTF*HSLEEM
Trigger: CATCTCCTCCAGGGAGTGCAAGAAGGTGTACAAGGA...CTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS TCA 90 bp AGTATTTGTCCACCAGCACCCCTCCACAGTGAAGCTGATTGCCTTTaGGCAGAGCCACCTGCCATGGGTGCGAGCCTTCTTTACATTTGT +
Preference number: 5 (lower is better)
Translates to: SICPPAPLHSEADCL*AEPPAMGASLLYIC
Trigger: ACAAATGTAAAGAAGGCTCGCACCCATGGCAGGTGGCTCTGCTCAAAGGCAATCAGCTTCACTGTGGAGGGGTGCTGGTGGACAAATACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CAA 90 bp TTGTGTGCAGGGACACTTGTGCCCCAGCACACTTGGAGGTCAGAGGATAACAAGTTTGTACTTGCAGACTaGAGTGTAGACGCCTGGGTC +
Preference number: 5 (lower is better)
Translates to: LCAGTLVPQHTWRSEDNKFVLAD*SVDAWV
Trigger: GACCCAGGCGTCTACACTCAAGTCTGCAAGTACAAA...CTTGTTATCCTCTGACCTCCAAGTGTGCTGGGGCACAAGTGTCCCTGCACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS TCA 90 bp TGGGGGTTCACAGTGTTCAGGAAGCTGGACTGCCTCCACTTTGGATaGCATCTTGACTGGCTCATCCAACCTCACAAGCATGATGTCATT +
Preference number: 5 (lower is better)
Translates to: WGFTVFRKLDCLHFG*HLDWLIQPHKHDVI
Trigger: AATGACATCATGCTTGTGAGGTTGGATGAGCCAGTCAAGATGTCATCCAAAGTGGAGGCAGTCCAGCTTCCTGAACACTGTGAACCCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CCA 90 bp CCCTCCACAGTGAAGCTGATTGCCTTTGAGCAGAGCCACCTGCCATaGGTGCGAGCCTTCTTTACATTTGTAGCCATCTATAATCCTTTC +
Preference number: 5 (lower is better)
Translates to: PSTVKLIAFEQSHLP*VRAFFTFVAIYNPF
Trigger: GAAAGGATTATAGATGGCTACAAATGTAAAGAAGGCTCGCACCCATGGCAGGTGGCTCTGCTCAAAGGCAATCAGCTTCACTGTGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CAA 90 bp GATGAAGGTCTCACAGTTACCAACCACTTTCCAATAAAGGACTGTAGGAATCCCGTGAGCACCCAGTATTaGTCCACCAGCACCCCTCCA +
Preference number: 5 (lower is better)
Translates to: DEGLTVTNHFPIKDCRNPVSTQY*STSTPP
Trigger: TGGAGGGGTGCTGGTGGACAAATACTGGGTGCTCAC...GGGATTCCTACAGTCCTTTATTGGAAAGTGGTTGGTAACTGTGAGACCTTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS-3UTR CAA 90 bp AAGGCAGTGGATGAAGGTCTCACAGTTACCAACCACTTTCCAATAAAGGACTGTTGGACTGCCTCCACTTaGGATGACATCTTGACTGGC +
Preference number: 5 (lower is better)
Translates to: KAVDEGLTVTNHFPIKDCWTAST*DDILTG
Trigger: GCCAGTCAAGATGTCATCCAAAGTGGAGGCAGTCCA...ACAGTCCTTTATTGGAAAGTGGTTGGTAACTGTGAGACCTTCATCCACTGCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS GCA 72 bp GATCCGAGGGAAAGGTCACGTCTGGGCTGGTTGTGGTaGCCCATCCAGAGACGGTACATGACGTCCCTGGGG +
Preference number: 6 (lower is better)
Translates to: DPRERSRLGWLW*PIQRRYMTSLG
Trigger: CCCCAGGGACGTCATGTACCGTCTCTGGATGGGGCACCACAACCAGCCCAGACGTGACCTTTCCCTCGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS TCA 72 bp CCACCAGCACCCCTCCACAGTGAAGCTGATTGCCTTTaGGCAGAGCCACCTGCCATGGGTGCGAGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: PPAPLHSEADCL*AEPPAMGASLL
Trigger: AAGAAGGCTCGCACCCATGGCAGGTGGCTCTGCTCAAAGGCAATCAGCTTCACTGTGGAGGGGTGCTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS TCA 72 bp TGGGCTGGTTGTGGTGCCCCATCCAGAGACGGTACATaGCGTCCCTGGGGGTTCACAGTGTTCAGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: WAGCGAPSRDGT*RPWGFTVFRKL
Trigger: CAGCTTCCTGAACACTGTGAACCCCCAGGGACGTCATGTACCGTCTCTGGATGGGGCACCACAACCAGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CCA 72 bp CCACCGTTTGTACTTGCAGACTTGAGTGTAGACGCCTaGGTCGTTGGGCTGGCCACAAGGGTAGGTACCCCA +
Preference number: 6 (lower is better)
Translates to: PPFVLADLSVDA*VVGLATRVGTP
Trigger: TGGGGTACCTACCCTTGTGGCCAGCCCAACGACCCAGGCGTCTACACTCAAGTCTGCAAGTACAAACGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CAA 72 bp CATGGTCTCCATCACCCACCGTTTGTACTTGCAGACTaGAGTGTAGACGCCTGGGTCGTTGGGCTGGCCACA +
Preference number: 6 (lower is better)
Translates to: HGLHHPPFVLAD*SVDAWVVGLAT
Trigger: TGTGGCCAGCCCAACGACCCAGGCGTCTACACTCAAGTCTGCAAGTACAAACGGTGGGTGATGGAGACCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS GCA 72 bp CAGCTGTACTTGGTACTGACCCATTTTGCAGTGGGCTaGTGTGAGCACCCAGTATTTGTCCACCAGCACCCC +
Preference number: 6 (lower is better)
Translates to: QLYLVLTHFAVG*CEHPVFVHQHP
Trigger: GGGGTGCTGGTGGACAAATACTGGGTGCTCACAGCAGCCCACTGCAAAATGGGTCAGTACCAAGTACAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS GCA 72 bp GGGTTTTCATGGTCTCCATCACCCACCGTTTGTACTTaGAGACTTGAGTGTAGACGCCTGGGTCGTTGGGCT +
Preference number: 6 (lower is better)
Translates to: GFSWSPSPTVCT*RLECRRLGRWA
Trigger: AGCCCAACGACCCAGGCGTCTACACTCAAGTCTGCAAGTACAAACGGTGGGTGATGGAGACCATGAAAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CCA 72 bp CCAGGGTGCCGGAATGACTTTGTAGCCTTGATCTTCTaGGCACTCTGGTCCCCTATTTTATCACTGCCCAGC +
Preference number: 6 (lower is better)
Translates to: PGCRNDFVALIF*ALWSPILSLPS
Trigger: GCTGGGCAGTGATAAAATAGGGGACCAGAGTGCCCAGAAGATCAAGGCTACAAAGTCATTCCGGCACCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CAA 72 bp AGCATGGTTTTCCCCAGCAGGTCCTTGTACACCTTCTaGCACTCCCTGGAGGAGATGAGCTTCACATCCGAG +
Preference number: 6 (lower is better)
Translates to: SMVFPSRSLYTF*HSLEEMSFTSE
Trigger: CTCGGATGTGAAGCTCATCTCCTCCAGGGAGTGCAAGAAGGTGTACAAGGACCTGCTGGGGAAAACCATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CAA 90 bp CCAGCACACAGCATGGTTTTCCCCAGCAGGTCCTTGTACACCTTCTaGCACTCCCTGGAGGAGATGAGCTTCACATCCGAGCACATAAGA +
Preference number: 6 (lower is better)
Translates to: PAHSMVFPSRSLYTF*HSLEEMSFTSEHIR
Trigger: TCTTATGTGCTCGGATGTGAAGCTCATCTCCTCCAGGGAGTGCAAGAAGGTGTACAAGGACCTGCTGGGGAAAACCATGCTGTGTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CAA 90 bp TCACAGTGTTCAGGAAGCTGGACTGCCTCCACTTTGGATGACATCTaGACTGGCTCATCCAACCTCACAAGCATGATGTCATTGACGTGG +
Preference number: 6 (lower is better)
Translates to: SQCSGSWTASTLDDI*TGSSNLTSMMSLTW
Trigger: CCACGTCAATGACATCATGCTTGTGAGGTTGGATGAGCCAGTCAAGATGTCATCCAAAGTGGAGGCAGTCCAGCTTCCTGAACACTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7
CDS CCA 72 bp CGGAATGACTTTGTAGCCTTGATCTTCTGGGCACTCTaGTCCCCTATTTTATCACTGCCCAGCTGTACTTGG +
Preference number: 6 (lower is better)
Translates to: RNDFVALIFWAL*SPILSLPSCTW
Trigger: CCAAGTACAGCTGGGCAGTGATAAAATAGGGGACCAGAGTGCCCAGAAGATCAAGGCTACAAAGTCATTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032955.7