Pregenerated sensors for KLK5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074155Ensembl transcript IDs: ENSMUST00000048444.7, ENSMUST00000205919.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR CCA 90 bp | AAGAAAAGGCTCAACTCTGGGTTTATGGATGGGTCCATAGGTAGTGATGGGTTTCTCATTGCCGTTGGGTaGCACTGGTTCCGTGGTTCC | + |
Preference number: 2 (lower is better) Translates to: KKRLNSGFMDGSIGSDGFLIAVG*HWFRGS Trigger: GGAACCACGGAACCAGTGCCACCCAACGGCAATGAG...AAACCCATCACTACCTATGGACCCATCCATAAACCCAGAGTTGAGCCTTTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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3UTR GCA 72 bp | TCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTaGCGTTGGGTGGCACTGGTTCCGTGGTTCCTGGTG | + |
Preference number: 3 (lower is better) Translates to: SSAFSERDSAPH*RWVALVPWFLV Trigger: CACCAGGAACCACGGAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | AGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTGGTTCCCCTCCGGAATCACCCTaGCAGGAGTCCCTGCCCTCT | + |
Preference number: 4 (lower is better) Translates to: SILREGQCSSLPLGGTGSPPESP*QESLPS Trigger: AGAGGGCAGGGACTCCTGCCAGGGTGATTCCGGAGG...GGAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR TCA 90 bp | CAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTGGTTCACTTGGAATCCGTGCTaGGGTCTCTGTTGGTCCCAG | + |
Preference number: 4 (lower is better) Translates to: QHSQRGTVLLIAVGWHWFTWNPC*GLCWSQ Trigger: CTGGGACCAACAGAGACCTCAGCACGGATTCCAAGT...GAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | TATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTGTGAGCAGCCACTGTaGGCTGATCAGCACAGCCCC | + |
Preference number: 4 (lower is better) Translates to: YLQHSQRGTVLLIAVGWHCEQPL*ADQHSP Trigger: GGGGCTGTGCTGATCAGCCCACAGTGGCTGCTCACA...GTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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3UTR CAA 72 bp | ATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATaGCCGTTGGGTGGCACTGGTTCCGTGGTTCCTGGT | + |
Preference number: 4 (lower is better) Translates to: IFSILREGQCSS*PLGGTGSVVPG Trigger: ACCAGGAACCACGGAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | GCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCCAGGGCGCCCTGCCATaGCTGTGCATCCTTTTGGCA | + |
Preference number: 4 (lower is better) Translates to: ASSGETEVIFSILREGQCQGALP*LCILLA Trigger: TGCCAAAAGGATGCACAGCCATGGCAGGGCGCCCTG...GCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR GCA 90 bp | GAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGATCAGGGTAGCCATTaGCCATTTCCAGGGGTGTCC | + |
Preference number: 4 (lower is better) Translates to: EVIFSILREGQCSSLPLGDQGSH*PFPGVS Trigger: GGACACCCCTGGAAATGGGCAATGGCTACCCTGATC...ACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR GCA 90 bp | GAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTCCTGTAACTTGCCATTaGAGACCACAGGACCTCCGG | + |
Preference number: 4 (lower is better) Translates to: EVIFSILREGQCSSLPLGPVTCH*RPQDLR Trigger: CCGGAGGTCCTGTGGTCTGCAATGGCAAGTTACAGG...ACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | TATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACCACCTGCGCAGAACATaGTCTTGTCTATCTGTCCTG | + |
Preference number: 4 (lower is better) Translates to: YLQHSQRGTVLLIAVGWHHLRRT*SCLSVL Trigger: CAGGACAGATAGACAAGACCATGTTCTGCGCAGGTG...GTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR TCA 90 bp | GAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTAGCAAGAACAGGCTCTaGGACCCCCAGAACCAGGGT | + |
Preference number: 4 (lower is better) Translates to: EQVLERLKLSSAFSERDSSKNRL*DPQNQG Trigger: ACCCTGGTTCTGGGGGTCTCAGAGCCTGTTCTTGCT...ACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR GCA 90 bp | GAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCTTTCTGCAGTGTGCTaGTGTGAGCAGCCACTGTGG | + |
Preference number: 4 (lower is better) Translates to: ERLKLSSAFSERDSAPHCLSAVC*CEQPLW Trigger: CCACAGTGGCTGCTCACAGCAGCACACTGCAGAAAG...GCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR TCA 90 bp | CTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGACGGGCTTCACTGAGTaGGAGTCACGGATTTTTCTG | + |
Preference number: 4 (lower is better) Translates to: LKLSSAFSERDSAPHCRWTGFTE*ESRIFL Trigger: CAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGT...CCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | CTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGACGGATTCTGAACACTaGCTTTCTGCAGTGTGCTGC | + |
Preference number: 4 (lower is better) Translates to: LKLSSAFSERDSAPHCRWTDSEH*LSAVCC Trigger: GCAGCACACTGCAGAAAGCCAGTGTTCAGAATCCGT...CCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | CAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCATAGACAGGTGACATaGAATGGTGGCCCAGACGGA | + |
Preference number: 4 (lower is better) Translates to: QVLERLKLSSAFSERDSAHRQVT*NGGPDG Trigger: TCCGTCTGGGCCACCATTCCATGTCACCTGTCTATG...AGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR TCA 90 bp | AAGAAAAGGCTCAACTCTGGGTTTATGGATGGGTCCATAGGTAGTGATGGGTTTAGACTCATAGACAGGTaGCATGGAATGGTGGCCCAG | + |
Preference number: 4 (lower is better) Translates to: KKRLNSGFMDGSIGSDGFRLIDR*HGMVAQ Trigger: CTGGGCCACCATTCCATGTCACCTGTCTATGAGTCT...AAACCCATCACTACCTATGGACCCATCCATAAACCCAGAGTTGAGCCTTTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR TCA 90 bp | AGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGGGCCCAGACGGATTCTaGACACTGGCTTTCTGCAGT | + |
Preference number: 4 (lower is better) Translates to: RNIEQVLERLKLSSAFSEGPDGF*TLAFCS Trigger: ACTGCAGAAAGCCAGTGTTCAGAATCCGTCTGGGCC...CTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR GCA 90 bp | AGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGTGGCTTTCTGCAGTGTaGTGCTGTGAGCAGCCACTG | + |
Preference number: 4 (lower is better) Translates to: RNIEQVLERLKLSSAFSEWLSAV*CCEQPL Trigger: CAGTGGCTGCTCACAGCAGCACACTGCAGAAAGCCA...CTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | CTTGGTGCCAAGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCCGAACTCACACAGGTTaGTGTAGACACCTGGTCTGT | + |
Preference number: 4 (lower is better) Translates to: LGAKKHRASSGETEVIFSRTHTG*CRHLVC Trigger: ACAGACCAGGTGTCTACACCAACCTGTGTGAGTTCG...GCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCTTGGCACCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR TCA 90 bp | AGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGGGTGGGGGATGGATTTaGTTCCCTGGAACATCTGCT | + |
Preference number: 4 (lower is better) Translates to: RNIEQVLERLKLSSAFSEGGGWI*FPGTSA Trigger: AGCAGATGTTCCAGGGAATCAAATCCATCCCCCACC...CTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | AACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGATGGATTTGATTCCCTaGAACATCTGCTGCCCAGAC | + |
Preference number: 4 (lower is better) Translates to: NIEQVLERLKLSSAFSERMDLIP*NICCPD Trigger: GTCTGGGCAGCAGATGTTCCAGGGAATCAAATCCAT...CCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CCA 90 bp | AGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGGTAATATTCAGGCACTaGAGGACTTTCGGGAAGTTA | + |
Preference number: 4 (lower is better) Translates to: RASSGETEVIFSILREGQVIFRH*RTFGKL Trigger: TAACTTCCCGAAAGTCCTCCAGTGCCTGAATATTAC...CTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 90 bp | AGCTGCTATCTGAACGGGTGTCCTCCCCAGACTTGGAATCCGTGCTaGGGTCTCTGTTGGTCCCAGAGGGTTCGGTTCCAGAGGGGTTGT | + |
Preference number: 5 (lower is better) Translates to: SCYLNGCPPQTWNPC*GLCWSQRVRFQRGC Trigger: ACAACCCCTCTGGAACCGAACCCTCTGGGACCAACAGAGACCTCAGCACGGATTCCAAGTCTGGGGAGGACACCCGTTCAGATAGCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048444.7 ENSMUST00000205919.2 |
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CDS TCA 90 bp | CATTGGAGTGGCCAGGGTGGGAGTAACCGGGGTGGGGGATGGATTTaGTTCCCTGGAACATCTGCTGCCCAGACTCATAGACAGGTGACA | + |
Preference number: 5 (lower is better) Translates to: HWSGQGGSNRGGGWI*FPGTSAAQTHRQVT Trigger: TGTCACCTGTCTATGAGTCTGGGCAGCAGATGTTCCAGGGAATCAAATCCATCCCCCACCCCGGTTACTCCCACCCTGGCCACTCCAATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CAA 90 bp | CTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGTGGCTGCTGCTCGTaGTCCCCCAGCCAGACACCA | + |
Preference number: 5 (lower is better) Translates to: LERLKLSSAFSERDSAPHCGCCS*SPSQTP Trigger: TGGTGTCTGGCTGGGGGACAACGAGCAGCAGCCACA...ATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CAA 90 bp | TATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTCGGTTCCAGAGGGGTaGTCACAAGAGGAAACATCC | + |
Preference number: 5 (lower is better) Translates to: YLQHSQRGTVLLIAVGWHSVPEG*SQEETS Trigger: GGATGTTTCCTCTTGTGACAACCCCTCTGGAACCGA...GTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 90 bp | GGATTTGATTCCCTGGAACATCTGCTGCCCAGACTCATAGACAGGTaGCATGGAATGGTGGCCCAGACGGATTCTGAACACTGGCTTTCT | + |
Preference number: 5 (lower is better) Translates to: GFDSLEHLLPRLIDR*HGMVAQTDSEHWLS Trigger: AGAAAGCCAGTGTTCAGAATCCGTCTGGGCCACCATTCCATGTCACCTGTCTATGAGTCTGGGCAGCAGATGTTCCAGGGAATCAAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CAA 90 bp | AAGAAAAGGCTCAACTCTGGGTTTATGGATGGGTCCATAGGTAGTGATGGGTTTATGAGCATGAGGTCATaGGAGTGGCCAGGGTGGGAG | + |
Preference number: 5 (lower is better) Translates to: KKRLNSGFMDGSIGSDGFMSMRS*EWPGWE Trigger: CTCCCACCCTGGCCACTCCAATGACCTCATGCTCAT...AAACCCATCACTACCTATGGACCCATCCATAAACCCAGAGTTGAGCCTTTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS-3UTR CAA 90 bp | CTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGACTTTCGGGAAGTTATaGTGGCTGCTGCTCGTTGTC | + |
Preference number: 5 (lower is better) Translates to: LKLSSAFSERDSAPHCRWTFGKL*WLLLVV Trigger: GACAACGAGCAGCAGCCACAATAACTTCCCGAAAGT...CCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 90 bp | CCCTCGGTGGCACAGTCACAAGCAATTTCGACGGGCTTCACTGAGTaGGAGTCACGGATTTTTCTGTTCATTTTGATGAGCATGAGGTCA | + |
Preference number: 5 (lower is better) Translates to: PSVAQSQAISTGFTE*ESRIFLFILMSMRS Trigger: TGACCTCATGCTCATCAAAATGAACAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGTCGAAATTGCTTGTGACTGTGCCACCGAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CCA 90 bp | GCCCTCTTCATCACCTGCGCAGAACATGGTCTTGTCTATCTGTCCTaGGTAGGAGTTTTTACACCTCTCCTCACTGAGCACAGTAATATT | + |
Preference number: 5 (lower is better) Translates to: ALFITCAEHGLVYLS*VGVFTPLLTEHSNI Trigger: AATATTACTGTGCTCAGTGAGGAGAGGTGTAAAAACTCCTACCCAGGACAGATAGACAAGACCATGTTCTGCGCAGGTGATGAAGAGGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CAA 72 bp | CACTGTGGGCTGATCAGCACAGCCCCACAGTACAGCTaGTTGGGCCCCAGAAGCAGGGCGCCCTGCCATGGC | + |
Preference number: 6 (lower is better) Translates to: HCGLISTAPQYS*LGPRSRAPCHG Trigger: GCCATGGCAGGGCGCCCTGCTTCTGGGGCCCAACAAGCTGTACTGTGGGGCTGTGCTGATCAGCCCACAGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CAA 72 bp | TGTGGGCTGATCAGCACAGCCCCACAGTACAGCTTGTaGGGCCCCAGAAGCAGGGCGCCCTGCCATGGCTGT | + |
Preference number: 6 (lower is better) Translates to: CGLISTAPQYSL*GPRSRAPCHGC Trigger: ACAGCCATGGCAGGGCGCCCTGCTTCTGGGGCCCAACAAGCTGTACTGTGGGGCTGTGCTGATCAGCCCACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CAA 90 bp | AGCAGCCACTGTGGGCTGATCAGCACAGCCCCACAGTACAGCTTGTaGGGCCCCAGAAGCAGGGCGCCCTGCCATGGCTGTGCATCCTTT | + |
Preference number: 6 (lower is better) Translates to: SSHCGLISTAPQYSL*GPRSRAPCHGCASF Trigger: AAAGGATGCACAGCCATGGCAGGGCGCCCTGCTTCTGGGGCCCAACAAGCTGTACTGTGGGGCTGTGCTGATCAGCCCACAGTGGCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 72 bp | CTGAACGGGTGTCCTCCCCAGACTTGGAATCCGTGCTaGGGTCTCTGTTGGTCCCAGAGGGTTCGGTTCCAG | + |
Preference number: 6 (lower is better) Translates to: LNGCPPQTWNPC*GLCWSQRVRFQ Trigger: CTGGAACCGAACCCTCTGGGACCAACAGAGACCTCAGCACGGATTCCAAGTCTGGGGAGGACACCCGTTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048444.7 ENSMUST00000205919.2 |
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CDS TCA 72 bp | GGCCAGGGTGGGAGTAACCGGGGTGGGGGATGGATTTaGTTCCCTGGAACATCTGCTGCCCAGACTCATAGA | + |
Preference number: 6 (lower is better) Translates to: GQGGSNRGGGWI*FPGTSAAQTHR Trigger: TCTATGAGTCTGGGCAGCAGATGTTCCAGGGAATCAAATCCATCCCCCACCCCGGTTACTCCCACCCTGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS GCA 72 bp | TCAGGCACTGGAGGACTTTCGGGAAGTTATTGTGGCTaGTGCTCGTTGTCCCCCAGCCAGACACCATGCACC | + |
Preference number: 6 (lower is better) Translates to: SGTGGLSGSYCG*CSLSPSQTPCT Trigger: GGTGCATGGTGTCTGGCTGGGGGACAACGAGCAGCAGCCACAATAACTTCCCGAAAGTCCTCCAGTGCCTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS GCA 72 bp | CAGACGGATTCTGAACACTGGCTTTCTGCAGTGTGCTaGTGTGAGCAGCCACTGTGGGCTGATCAGCACAGC | + |
Preference number: 6 (lower is better) Translates to: QTDSEHWLSAVC*CEQPLWADQHS Trigger: GCTGTGCTGATCAGCCCACAGTGGCTGCTCACAGCAGCACACTGCAGAAAGCCAGTGTTCAGAATCCGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 72 bp | GTCACAAGAGGAAACATCCCCAGCAAGAACAGGCTCTaGGACCCCCAGAACCAGGGTTGTGATCAGGGTAGC | + |
Preference number: 6 (lower is better) Translates to: VTRGNIPSKNRL*DPQNQGCDQGS Trigger: GCTACCCTGATCACAACCCTGGTTCTGGGGGTCTCAGAGCCTGTTCTTGCTGGGGATGTTTCCTCTTGTGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048444.7 ENSMUST00000205919.2 |
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CDS CAA 72 bp | TCTCTGTTGGTCCCAGAGGGTTCGGTTCCAGAGGGGTaGTCACAAGAGGAAACATCCCCAGCAAGAACAGGC | + |
Preference number: 6 (lower is better) Translates to: SLLVPEGSVPEG*SQEETSPARTG Trigger: GCCTGTTCTTGCTGGGGATGTTTCCTCTTGTGACAACCCCTCTGGAACCGAACCCTCTGGGACCAACAGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048444.7 ENSMUST00000205919.2 |
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CDS TCA 72 bp | TCCCTGGAACATCTGCTGCCCAGACTCATAGACAGGTaGCATGGAATGGTGGCCCAGACGGATTCTGAACAC | + |
Preference number: 6 (lower is better) Translates to: SLEHLLPRLIDR*HGMVAQTDSEH Trigger: GTGTTCAGAATCCGTCTGGGCCACCATTCCATGTCACCTGTCTATGAGTCTGGGCAGCAGATGTTCCAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CCA 72 bp | CCACTTAACGAACTCACACAGGTTGGTGTAGACACCTaGTCTGTTCCGCTGAGCACAGGGGAAATCACCCCA | + |
Preference number: 6 (lower is better) Translates to: PLNELTQVGVDT*SVPLSTGEITP Trigger: TGGGGTGATTTCCCCTGTGCTCAGCGGAACAGACCAGGTGTCTACACCAACCTGTGTGAGTTCGTTAAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CCA 72 bp | CACCTCTCCTCACTGAGCACAGTAATATTCAGGCACTaGAGGACTTTCGGGAAGTTATTGTGGCTGCTGCTC | + |
Preference number: 6 (lower is better) Translates to: HLSSLSTVIFRH*RTFGKLLWLLL Trigger: GAGCAGCAGCCACAATAACTTCCCGAAAGTCCTCCAGTGCCTGAATATTACTGTGCTCAGTGAGGAGAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CCA 72 bp | AGGAGTCCCTGCCCTCTTCATCACCTGCGCAGAACATaGTCTTGTCTATCTGTCCTGGGTAGGAGTTTTTAC | + |
Preference number: 6 (lower is better) Translates to: RSPCPLHHLRRT*SCLSVLGRSFY Trigger: GTAAAAACTCCTACCCAGGACAGATAGACAAGACCATGTTCTGCGCAGGTGATGAAGAGGGCAGGGACTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS CCA 72 bp | ATCACCTGCGCAGAACATGGTCTTGTCTATCTGTCCTaGGTAGGAGTTTTTACACCTCTCCTCACTGAGCAC | + |
Preference number: 6 (lower is better) Translates to: ITCAEHGLVYLS*VGVFTPLLTEH Trigger: GTGCTCAGTGAGGAGAGGTGTAAAAACTCCTACCCAGGACAGATAGACAAGACCATGTTCTGCGCAGGTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 72 bp | GCACAGTCACAAGCAATTTCGACGGGCTTCACTGAGTaGGAGTCACGGATTTTTCTGTTCATTTTGATGAGC | + |
Preference number: 6 (lower is better) Translates to: AQSQAISTGFTE*ESRIFLFILMS Trigger: GCTCATCAAAATGAACAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGTCGAAATTGCTTGTGACTGTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |
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CDS TCA 72 bp | GGTGGCACAGTCACAAGCAATTTCGACGGGCTTCACTaGGTGAGAGTCACGGATTTTTCTGTTCATTTTGAT | + |
Preference number: 6 (lower is better) Translates to: GGTVTSNFDGLH*VRVTDFSVHFD Trigger: ATCAAAATGAACAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGTCGAAATTGCTTGTGACTGTGCCACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048444.7 |