RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLK5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074155

Ensembl transcript IDs: ENSMUST00000048444.7, ENSMUST00000205919.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AAGAAAAGGCTCAACTCTGGGTTTATGGATGGGTCCATAGGTAGTGATGGGTTTCTCATTGCCGTTGGGTaGCACTGGTTCCGTGGTTCC +
Preference number: 2 (lower is better)
Translates to: KKRLNSGFMDGSIGSDGFLIAVG*HWFRGS
Trigger: GGAACCACGGAACCAGTGCCACCCAACGGCAATGAG...AAACCCATCACTACCTATGGACCCATCCATAAACCCAGAGTTGAGCCTTTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
3UTR GCA 72 bp TCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTaGCGTTGGGTGGCACTGGTTCCGTGGTTCCTGGTG +
Preference number: 3 (lower is better)
Translates to: SSAFSERDSAPH*RWVALVPWFLV
Trigger: CACCAGGAACCACGGAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp AGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTGGTTCCCCTCCGGAATCACCCTaGCAGGAGTCCCTGCCCTCT +
Preference number: 4 (lower is better)
Translates to: SILREGQCSSLPLGGTGSPPESP*QESLPS
Trigger: AGAGGGCAGGGACTCCTGCCAGGGTGATTCCGGAGG...GGAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR TCA 90 bp CAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTGGTTCACTTGGAATCCGTGCTaGGGTCTCTGTTGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: QHSQRGTVLLIAVGWHWFTWNPC*GLCWSQ
Trigger: CTGGGACCAACAGAGACCTCAGCACGGATTCCAAGT...GAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp TATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTGTGAGCAGCCACTGTaGGCTGATCAGCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: YLQHSQRGTVLLIAVGWHCEQPL*ADQHSP
Trigger: GGGGCTGTGCTGATCAGCCCACAGTGGCTGCTCACA...GTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
3UTR CAA 72 bp ATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATaGCCGTTGGGTGGCACTGGTTCCGTGGTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: IFSILREGQCSS*PLGGTGSVVPG
Trigger: ACCAGGAACCACGGAACCAGTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp GCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCCAGGGCGCCCTGCCATaGCTGTGCATCCTTTTGGCA +
Preference number: 4 (lower is better)
Translates to: ASSGETEVIFSILREGQCQGALP*LCILLA
Trigger: TGCCAAAAGGATGCACAGCCATGGCAGGGCGCCCTG...GCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR GCA 90 bp GAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGATCAGGGTAGCCATTaGCCATTTCCAGGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: EVIFSILREGQCSSLPLGDQGSH*PFPGVS
Trigger: GGACACCCCTGGAAATGGGCAATGGCTACCCTGATC...ACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR GCA 90 bp GAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTCCTGTAACTTGCCATTaGAGACCACAGGACCTCCGG +
Preference number: 4 (lower is better)
Translates to: EVIFSILREGQCSSLPLGPVTCH*RPQDLR
Trigger: CCGGAGGTCCTGTGGTCTGCAATGGCAAGTTACAGG...ACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp TATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACCACCTGCGCAGAACATaGTCTTGTCTATCTGTCCTG +
Preference number: 4 (lower is better)
Translates to: YLQHSQRGTVLLIAVGWHHLRRT*SCLSVL
Trigger: CAGGACAGATAGACAAGACCATGTTCTGCGCAGGTG...GTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR TCA 90 bp GAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTAGCAAGAACAGGCTCTaGGACCCCCAGAACCAGGGT +
Preference number: 4 (lower is better)
Translates to: EQVLERLKLSSAFSERDSSKNRL*DPQNQG
Trigger: ACCCTGGTTCTGGGGGTCTCAGAGCCTGTTCTTGCT...ACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR GCA 90 bp GAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCTTTCTGCAGTGTGCTaGTGTGAGCAGCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: ERLKLSSAFSERDSAPHCLSAVC*CEQPLW
Trigger: CCACAGTGGCTGCTCACAGCAGCACACTGCAGAAAG...GCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR TCA 90 bp CTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGACGGGCTTCACTGAGTaGGAGTCACGGATTTTTCTG +
Preference number: 4 (lower is better)
Translates to: LKLSSAFSERDSAPHCRWTGFTE*ESRIFL
Trigger: CAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGT...CCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp CTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGACGGATTCTGAACACTaGCTTTCTGCAGTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: LKLSSAFSERDSAPHCRWTDSEH*LSAVCC
Trigger: GCAGCACACTGCAGAAAGCCAGTGTTCAGAATCCGT...CCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp CAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCATAGACAGGTGACATaGAATGGTGGCCCAGACGGA +
Preference number: 4 (lower is better)
Translates to: QVLERLKLSSAFSERDSAHRQVT*NGGPDG
Trigger: TCCGTCTGGGCCACCATTCCATGTCACCTGTCTATG...AGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR TCA 90 bp AAGAAAAGGCTCAACTCTGGGTTTATGGATGGGTCCATAGGTAGTGATGGGTTTAGACTCATAGACAGGTaGCATGGAATGGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: KKRLNSGFMDGSIGSDGFRLIDR*HGMVAQ
Trigger: CTGGGCCACCATTCCATGTCACCTGTCTATGAGTCT...AAACCCATCACTACCTATGGACCCATCCATAAACCCAGAGTTGAGCCTTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR TCA 90 bp AGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGGGCCCAGACGGATTCTaGACACTGGCTTTCTGCAGT +
Preference number: 4 (lower is better)
Translates to: RNIEQVLERLKLSSAFSEGPDGF*TLAFCS
Trigger: ACTGCAGAAAGCCAGTGTTCAGAATCCGTCTGGGCC...CTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR GCA 90 bp AGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGTGGCTTTCTGCAGTGTaGTGCTGTGAGCAGCCACTG +
Preference number: 4 (lower is better)
Translates to: RNIEQVLERLKLSSAFSEWLSAV*CCEQPL
Trigger: CAGTGGCTGCTCACAGCAGCACACTGCAGAAAGCCA...CTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp CTTGGTGCCAAGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCCGAACTCACACAGGTTaGTGTAGACACCTGGTCTGT +
Preference number: 4 (lower is better)
Translates to: LGAKKHRASSGETEVIFSRTHTG*CRHLVC
Trigger: ACAGACCAGGTGTCTACACCAACCTGTGTGAGTTCG...GCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCTTGGCACCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR TCA 90 bp AGAAACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGGGTGGGGGATGGATTTaGTTCCCTGGAACATCTGCT +
Preference number: 4 (lower is better)
Translates to: RNIEQVLERLKLSSAFSEGGGWI*FPGTSA
Trigger: AGCAGATGTTCCAGGGAATCAAATCCATCCCCCACC...CTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp AACATAGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGATGGATTTGATTCCCTaGAACATCTGCTGCCCAGAC +
Preference number: 4 (lower is better)
Translates to: NIEQVLERLKLSSAFSERMDLIP*NICCPD
Trigger: GTCTGGGCAGCAGATGTTCCAGGGAATCAAATCCAT...CCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCTATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CCA 90 bp AGAGCAAGTTCTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGGTAATATTCAGGCACTaGAGGACTTTCGGGAAGTTA +
Preference number: 4 (lower is better)
Translates to: RASSGETEVIFSILREGQVIFRH*RTFGKL
Trigger: TAACTTCCCGAAAGTCCTCCAGTGCCTGAATATTAC...CTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAGAACTTGCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 90 bp AGCTGCTATCTGAACGGGTGTCCTCCCCAGACTTGGAATCCGTGCTaGGGTCTCTGTTGGTCCCAGAGGGTTCGGTTCCAGAGGGGTTGT +
Preference number: 5 (lower is better)
Translates to: SCYLNGCPPQTWNPC*GLCWSQRVRFQRGC
Trigger: ACAACCCCTCTGGAACCGAACCCTCTGGGACCAACAGAGACCTCAGCACGGATTCCAAGTCTGGGGAGGACACCCGTTCAGATAGCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048444.7
ENSMUST00000205919.2
CDS TCA 90 bp CATTGGAGTGGCCAGGGTGGGAGTAACCGGGGTGGGGGATGGATTTaGTTCCCTGGAACATCTGCTGCCCAGACTCATAGACAGGTGACA +
Preference number: 5 (lower is better)
Translates to: HWSGQGGSNRGGGWI*FPGTSAAQTHRQVT
Trigger: TGTCACCTGTCTATGAGTCTGGGCAGCAGATGTTCCAGGGAATCAAATCCATCCCCCACCCCGGTTACTCCCACCCTGGCCACTCCAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CAA 90 bp CTGGAGAGACTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGTGGCTGCTGCTCGTaGTCCCCCAGCCAGACACCA +
Preference number: 5 (lower is better)
Translates to: LERLKLSSAFSERDSAPHCGCCS*SPSQTP
Trigger: TGGTGTCTGGCTGGGGGACAACGAGCAGCAGCCACA...ATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAGTCTCTCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CAA 90 bp TATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGGTGGCACTCGGTTCCAGAGGGGTaGTCACAAGAGGAAACATCC +
Preference number: 5 (lower is better)
Translates to: YLQHSQRGTVLLIAVGWHSVPEG*SQEETS
Trigger: GGATGTTTCCTCTTGTGACAACCCCTCTGGAACCGA...GTGCCACCCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 90 bp GGATTTGATTCCCTGGAACATCTGCTGCCCAGACTCATAGACAGGTaGCATGGAATGGTGGCCCAGACGGATTCTGAACACTGGCTTTCT +
Preference number: 5 (lower is better)
Translates to: GFDSLEHLLPRLIDR*HGMVAQTDSEHWLS
Trigger: AGAAAGCCAGTGTTCAGAATCCGTCTGGGCCACCATTCCATGTCACCTGTCTATGAGTCTGGGCAGCAGATGTTCCAGGGAATCAAATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CAA 90 bp AAGAAAAGGCTCAACTCTGGGTTTATGGATGGGTCCATAGGTAGTGATGGGTTTATGAGCATGAGGTCATaGGAGTGGCCAGGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: KKRLNSGFMDGSIGSDGFMSMRS*EWPGWE
Trigger: CTCCCACCCTGGCCACTCCAATGACCTCATGCTCAT...AAACCCATCACTACCTATGGACCCATCCATAAACCCAGAGTTGAGCCTTTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS-3UTR CAA 90 bp CTGAAGTTATCTTCAGCATTCTCAGAGAGGGACAGTGCTCCTCATTGCCGTTGGACTTTCGGGAAGTTATaGTGGCTGCTGCTCGTTGTC +
Preference number: 5 (lower is better)
Translates to: LKLSSAFSERDSAPHCRWTFGKL*WLLLVV
Trigger: GACAACGAGCAGCAGCCACAATAACTTCCCGAAAGT...CCAACGGCAATGAGGAGCACTGTCCCTCTCTGAGAATGCTGAAGATAACTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 90 bp CCCTCGGTGGCACAGTCACAAGCAATTTCGACGGGCTTCACTGAGTaGGAGTCACGGATTTTTCTGTTCATTTTGATGAGCATGAGGTCA +
Preference number: 5 (lower is better)
Translates to: PSVAQSQAISTGFTE*ESRIFLFILMSMRS
Trigger: TGACCTCATGCTCATCAAAATGAACAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGTCGAAATTGCTTGTGACTGTGCCACCGAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CCA 90 bp GCCCTCTTCATCACCTGCGCAGAACATGGTCTTGTCTATCTGTCCTaGGTAGGAGTTTTTACACCTCTCCTCACTGAGCACAGTAATATT +
Preference number: 5 (lower is better)
Translates to: ALFITCAEHGLVYLS*VGVFTPLLTEHSNI
Trigger: AATATTACTGTGCTCAGTGAGGAGAGGTGTAAAAACTCCTACCCAGGACAGATAGACAAGACCATGTTCTGCGCAGGTGATGAAGAGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CAA 72 bp CACTGTGGGCTGATCAGCACAGCCCCACAGTACAGCTaGTTGGGCCCCAGAAGCAGGGCGCCCTGCCATGGC +
Preference number: 6 (lower is better)
Translates to: HCGLISTAPQYS*LGPRSRAPCHG
Trigger: GCCATGGCAGGGCGCCCTGCTTCTGGGGCCCAACAAGCTGTACTGTGGGGCTGTGCTGATCAGCCCACAGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CAA 72 bp TGTGGGCTGATCAGCACAGCCCCACAGTACAGCTTGTaGGGCCCCAGAAGCAGGGCGCCCTGCCATGGCTGT +
Preference number: 6 (lower is better)
Translates to: CGLISTAPQYSL*GPRSRAPCHGC
Trigger: ACAGCCATGGCAGGGCGCCCTGCTTCTGGGGCCCAACAAGCTGTACTGTGGGGCTGTGCTGATCAGCCCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CAA 90 bp AGCAGCCACTGTGGGCTGATCAGCACAGCCCCACAGTACAGCTTGTaGGGCCCCAGAAGCAGGGCGCCCTGCCATGGCTGTGCATCCTTT +
Preference number: 6 (lower is better)
Translates to: SSHCGLISTAPQYSL*GPRSRAPCHGCASF
Trigger: AAAGGATGCACAGCCATGGCAGGGCGCCCTGCTTCTGGGGCCCAACAAGCTGTACTGTGGGGCTGTGCTGATCAGCCCACAGTGGCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 72 bp CTGAACGGGTGTCCTCCCCAGACTTGGAATCCGTGCTaGGGTCTCTGTTGGTCCCAGAGGGTTCGGTTCCAG +
Preference number: 6 (lower is better)
Translates to: LNGCPPQTWNPC*GLCWSQRVRFQ
Trigger: CTGGAACCGAACCCTCTGGGACCAACAGAGACCTCAGCACGGATTCCAAGTCTGGGGAGGACACCCGTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048444.7
ENSMUST00000205919.2
CDS TCA 72 bp GGCCAGGGTGGGAGTAACCGGGGTGGGGGATGGATTTaGTTCCCTGGAACATCTGCTGCCCAGACTCATAGA +
Preference number: 6 (lower is better)
Translates to: GQGGSNRGGGWI*FPGTSAAQTHR
Trigger: TCTATGAGTCTGGGCAGCAGATGTTCCAGGGAATCAAATCCATCCCCCACCCCGGTTACTCCCACCCTGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS GCA 72 bp TCAGGCACTGGAGGACTTTCGGGAAGTTATTGTGGCTaGTGCTCGTTGTCCCCCAGCCAGACACCATGCACC +
Preference number: 6 (lower is better)
Translates to: SGTGGLSGSYCG*CSLSPSQTPCT
Trigger: GGTGCATGGTGTCTGGCTGGGGGACAACGAGCAGCAGCCACAATAACTTCCCGAAAGTCCTCCAGTGCCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS GCA 72 bp CAGACGGATTCTGAACACTGGCTTTCTGCAGTGTGCTaGTGTGAGCAGCCACTGTGGGCTGATCAGCACAGC +
Preference number: 6 (lower is better)
Translates to: QTDSEHWLSAVC*CEQPLWADQHS
Trigger: GCTGTGCTGATCAGCCCACAGTGGCTGCTCACAGCAGCACACTGCAGAAAGCCAGTGTTCAGAATCCGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 72 bp GTCACAAGAGGAAACATCCCCAGCAAGAACAGGCTCTaGGACCCCCAGAACCAGGGTTGTGATCAGGGTAGC +
Preference number: 6 (lower is better)
Translates to: VTRGNIPSKNRL*DPQNQGCDQGS
Trigger: GCTACCCTGATCACAACCCTGGTTCTGGGGGTCTCAGAGCCTGTTCTTGCTGGGGATGTTTCCTCTTGTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048444.7
ENSMUST00000205919.2
CDS CAA 72 bp TCTCTGTTGGTCCCAGAGGGTTCGGTTCCAGAGGGGTaGTCACAAGAGGAAACATCCCCAGCAAGAACAGGC +
Preference number: 6 (lower is better)
Translates to: SLLVPEGSVPEG*SQEETSPARTG
Trigger: GCCTGTTCTTGCTGGGGATGTTTCCTCTTGTGACAACCCCTCTGGAACCGAACCCTCTGGGACCAACAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048444.7
ENSMUST00000205919.2
CDS TCA 72 bp TCCCTGGAACATCTGCTGCCCAGACTCATAGACAGGTaGCATGGAATGGTGGCCCAGACGGATTCTGAACAC +
Preference number: 6 (lower is better)
Translates to: SLEHLLPRLIDR*HGMVAQTDSEH
Trigger: GTGTTCAGAATCCGTCTGGGCCACCATTCCATGTCACCTGTCTATGAGTCTGGGCAGCAGATGTTCCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CCA 72 bp CCACTTAACGAACTCACACAGGTTGGTGTAGACACCTaGTCTGTTCCGCTGAGCACAGGGGAAATCACCCCA +
Preference number: 6 (lower is better)
Translates to: PLNELTQVGVDT*SVPLSTGEITP
Trigger: TGGGGTGATTTCCCCTGTGCTCAGCGGAACAGACCAGGTGTCTACACCAACCTGTGTGAGTTCGTTAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CCA 72 bp CACCTCTCCTCACTGAGCACAGTAATATTCAGGCACTaGAGGACTTTCGGGAAGTTATTGTGGCTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: HLSSLSTVIFRH*RTFGKLLWLLL
Trigger: GAGCAGCAGCCACAATAACTTCCCGAAAGTCCTCCAGTGCCTGAATATTACTGTGCTCAGTGAGGAGAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CCA 72 bp AGGAGTCCCTGCCCTCTTCATCACCTGCGCAGAACATaGTCTTGTCTATCTGTCCTGGGTAGGAGTTTTTAC +
Preference number: 6 (lower is better)
Translates to: RSPCPLHHLRRT*SCLSVLGRSFY
Trigger: GTAAAAACTCCTACCCAGGACAGATAGACAAGACCATGTTCTGCGCAGGTGATGAAGAGGGCAGGGACTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS CCA 72 bp ATCACCTGCGCAGAACATGGTCTTGTCTATCTGTCCTaGGTAGGAGTTTTTACACCTCTCCTCACTGAGCAC +
Preference number: 6 (lower is better)
Translates to: ITCAEHGLVYLS*VGVFTPLLTEH
Trigger: GTGCTCAGTGAGGAGAGGTGTAAAAACTCCTACCCAGGACAGATAGACAAGACCATGTTCTGCGCAGGTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 72 bp GCACAGTCACAAGCAATTTCGACGGGCTTCACTGAGTaGGAGTCACGGATTTTTCTGTTCATTTTGATGAGC +
Preference number: 6 (lower is better)
Translates to: AQSQAISTGFTE*ESRIFLFILMS
Trigger: GCTCATCAAAATGAACAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGTCGAAATTGCTTGTGACTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7
CDS TCA 72 bp GGTGGCACAGTCACAAGCAATTTCGACGGGCTTCACTaGGTGAGAGTCACGGATTTTTCTGTTCATTTTGAT +
Preference number: 6 (lower is better)
Translates to: GGTVTSNFDGLH*VRVTDFSVHFD
Trigger: ATCAAAATGAACAGAAAAATCCGTGACTCTCACTCAGTGAAGCCCGTCGAAATTGCTTGTGACTGTGCCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048444.7