Pregenerated sensors for KLK4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006948Ensembl transcript IDs: ENSMUST00000007161.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGATTGGAGTCTGGACTTGTGAGTCTGAGGGAGGAGGCTAGGGCCTaGCCTTGTAGATCTGAGGGAGAAGGGCTAGGAGCAATCCTGAGT | + |
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Preference number: 1 (lower is better) Translates to: RLESGLVSLREEARA*PCRSEGEGLGAILS Trigger: ACTCAGGATTGCTCCTAGCCCTTCTCCCTCAGATCTACAAGGTCAGGCCCTAGCCTCCTCCCTCAGACTCACAAGTCCAGACTCCAATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR CCA 90 bp | TGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATaGATCCCTGAATCTGAAAGAGGGTATTGTGGTCTGAATCCTTGG | + |
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Preference number: 1 (lower is better) Translates to: CRWVPLLCSREEVVA*IPESERGYCGLNPW Trigger: CCAAGGATTCAGACCACAATACCCTCTTTCAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR CCA 90 bp | AATACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTaGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATC | + |
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Preference number: 1 (lower is better) Translates to: NTGLLEDTAHRGKCR*VPLLCSREEVVAWI Trigger: GATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR TCA 90 bp | ATCCTTGGATCTGAGAGAGGAAATTGGAGTCTGGACTTGTGGGTCTaGGGGAGGAGATTGGAGTCTGGACTTGTGAGTCTGAGGGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: ILGSERGNWSLDLWV*GRRLESGLVSLREE Trigger: CTCCTCCCTCAGACTCACAAGTCCAGACTCCAATCTCCTCCCTCAGACCCACAAGTCCAGACTCCAATTTCCTCTCTCAGATCCAAGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR TCA 90 bp | AGGTTGTGGCATGGATCCCTGAATCTGAAAGAGGGTATTGTGGTCTaGATCCTTGGATCTGAGAGAGGAAATTGGAGTCTGGACTTGTGG | + |
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Preference number: 1 (lower is better) Translates to: RLWHGSLNLKEGIVV*ILGSERGNWSLDLW Trigger: CCACAAGTCCAGACTCCAATTTCCTCTCTCAGATCCAAGGATTCAGACCACAATACCCTCTTTCAGATTCAGGGATCCATGCCACAACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR-3UTR TCA 90 bp | GGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATCTGCTGGACTTGTGGGTCTaGGGGAGGAGATTGGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: GFHSCVPGRRLWHGSLNLLDLWV*GRRLES Trigger: AGACTCCAATCTCCTCCCTCAGACCCACAAGTCCAG...CAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATGAGGGTATTGTGGTCTaGATCCTTGGATCTGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: GGFHSCVPGRRLWHGSLNEGIVV*ILGSER Trigger: TCTCTCAGATCCAAGGATTCAGACCACAATACCCTC...ATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR-3UTR CCA 90 bp | GCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGGAGGAGATTGGAGTCTaGACTTGTGAGTCTGAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: ATRGHCTQRKMQVGSTPVEEIGV*TCESEG Trigger: TCCCTCAGACTCACAAGTCCAGACTCCAATCTCCTC...CACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR-3UTR CCA 90 bp | GGTCAATACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCTGAGAGAGGAAATTaGAGTCTGGACTTGTGGGTC | + |
|
Preference number: 2 (lower is better) Translates to: GQYWATRGHCTQRKMQVGSERGN*SLDLWV Trigger: GACCCACAAGTCCAGACTCCAATTTCCTCTCTCAGA...ACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATTGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR-3UTR TCA 90 bp | CTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTCTGAATCCTTGGATCTaGGAGAGGAAATTGGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: LLEDTAHRGKCRWVPLLCLNPWI*ERKLES Trigger: AGACTCCAATTTCCTCTCTCAGATCCAAGGATTCAG...ACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR GCA 72 bp | GCAAGGCTGGGTCAATACTGGGCTACTAGAGGACACTaGACACAGAGGAAAATGCAGGTGGGTTCCACTCCT | + |
|
Preference number: 3 (lower is better) Translates to: ARLGQYWATRGH*TQRKMQVGSTP Trigger: AGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATTGACCCAGCCTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR CCA 72 bp | GGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTaGCATGGATCCCTGAATCTGAAAGAGGGTATTGTG | + |
|
Preference number: 3 (lower is better) Translates to: GGFHSCVPGRRL*HGSLNLKEGIV Trigger: CACAATACCCTCTTTCAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR CCA 72 bp | CTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTaGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTG | + |
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Preference number: 3 (lower is better) Translates to: LLEDTAHRGKCR*VPLLCSREEVV Trigger: CACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR TCA 72 bp | TCTGAAAGAGGGTATTGTGGTCTGAATCCTTGGATCTaGGAGAGGAAATTGGAGTCTGGACTTGTGGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: SERGYCGLNPWI*ERKLESGLVGL Trigger: CAGACCCACAAGTCCAGACTCCAATTTCCTCTCTCAGATCCAAGGATTCAGACCACAATACCCTCTTTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR GCA 90 bp | GTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATCTGAAGCCGCCTGCCAGGGTTaGGAGTGTGGGGAGCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: VPLLCSREEVVAWIPESEAACQG*ECGEQS Trigger: GGACTGCTCCCCACACTCGCAACCCTGGCAGGCGGC...TTCAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR GCA 90 bp | CACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGGAGAACAGTGCCGCCTaGCAGGGTTGCGAGTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: HTEENAGGFHSCVPGRRLENSAA*QGCECG Trigger: CCCACACTCGCAACCCTGGCAGGCGGCACTGTTCTC...CAACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR GCA 90 bp | ACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGCACCCACTGCGGATaGACCAAGACTCCCGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TLHTEENAGGFHSCVPGRSTHCG*TKTPEQ Trigger: CTGCTCGGGAGTCTTGGTGCATCCGCAGTGGGTGCT...CCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CCA 90 bp | GGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATCTGTTGAAGTTGGGGTGCTaGATGGAGAGGTGGGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GFHSCVPGRRLWHGSLNLLKLGC*MERWAS Trigger: AGAGGCCCACCTCTCCATCCAGCACCCCAACTTCAA...CAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR TCA 90 bp | GGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATCTGCAGCGCAGAACATACTaGGGTGGTACACAGGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: GFHSCVPGRRLWHGSLNLQRRTY*GGTQGH Trigger: ATGACCCTGTGTACCACCTCAGTATGTTCTGCGCTG...CAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR GCA 90 bp | ACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCTCGTTGAAGTTGGGGTaGTGGATGGAGAGGTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TGLLEDTAHRGKCRWVPLSLKLG*WMERWA Trigger: GGCCCACCTCTCCATCCAGCACCCCAACTTCAACGA...GAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CCA 90 bp | GTCAATACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCAGGGTTGCGAGTGTaGGGAGCAGTCCTGGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VNTGLLEDTAHRGKCRWVPGLRV*GAVLAL Trigger: CAAGGCCAGGACTGCTCCCCACACTCGCAACCCTGG...AACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CCA 90 bp | CACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTTGCAGGAGTCCTTTTaGTCCTGTCCTCCTCCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: HTEENAGGFHSCVPGRRLLQESF*SCPPPA Trigger: CGCTGGAGGAGGACAGGACCAAAAGGACTCCTGCAA...CAACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CCA 90 bp | GGTCAATACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTGTGGGGAGCAGTCCTaGCCTTGTATGATCCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GQYWATRGHCTQRKMQVGCGEQS*PCMIRL Trigger: CAGCCGGATCATACAAGGCCAGGACTGCTCCCCACA...ACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| 3UTR CAA 72 bp | GCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTaGTGGCATGGATCCCTGAATCTGAAAGAGGGTATT | + |
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Preference number: 4 (lower is better) Translates to: AGGFHSCVPGRR*WHGSLNLKEGI Trigger: AATACCCTCTTTCAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR GCA 90 bp | GGTCAATACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTGAGCCTTTCAGGTTATaGAGGCCCAGTCCCACGATG | + |
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Preference number: 4 (lower is better) Translates to: GQYWATRGHCTQRKMQVGEPFRL*RPSPTM Trigger: CATCGTGGGACTGGGCCTGCATAACCTGAAAGGCTC...ACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATTGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CCA 90 bp | GGTCAATACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTAGTTGGGGTGCTGGATaGAGAGGTGGGCCTCTAACA | + |
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Preference number: 4 (lower is better) Translates to: GQYWATRGHCTQRKMQVGSWGAG*RGGPLT Trigger: TGTTAGAGGCCCACCTCTCCATCCAGCACCCCAACT...ACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGTATTGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CCA 90 bp | ACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGCACACTGCAGGAGGCTaGGCAGTTTCCCATTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: TLHTEENAGGFHSCVPGRHTAGG*AVSHSL Trigger: TAAAGAATGGGAAACTGCCCAGCCTCCTGCAGTGTG...CCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR TCA 90 bp | GCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTTTCCCATTCTTTAGTTaGCCCCAACCAGAGACTAGG | + |
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Preference number: 4 (lower is better) Translates to: AHRGKCRWVPLLCSREEVFPFFS*PQPETR Trigger: CCTAGTCTCTGGTTGGGGTCAACTAAAGAATGGGAA...AACCTCCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR GCA 90 bp | GGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATCTGGAGCATGAGATCGTTTaGAAAAGAAGGATCGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: GFHSCVPGRRLWHGSLNLEHEIV*KRRIVE Trigger: TTCAACGATCCTTCTTTTGCAAACGATCTCATGCTC...CAGATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | GGTGGGTTCCACTCCTGTGTTCCAGGGAGGAGGTTGTGGCATGGATCCCTGAATTGCCGCCTGCCAGGGTaGCGAGTGTGGGGAGCAGTC | + |
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Preference number: 5 (lower is better) Translates to: GGFHSCVPGRRLWHGSLNCRLPG*RVWGAV Trigger: GACTGCTCCCCACACTCGCAACCCTGGCAGGCGGCA...ATTCAGGGATCCATGCCACAACCTCCTCCCTGGAACACAGGAGTGGAACCCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS TCA 90 bp | GTGTGGGGAGCAGTCCTGGCCTTGTATGATCCGGCTGCTGACACTTaGGGCGGAGGCTCCTGTGACCTCAAGGATGAGGCACCCCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VWGAVLALYDPAADT*GGGSCDLKDEAPQE Trigger: TTCCTGGGGTGCCTCATCCTTGAGGTCACAGGAGCCTCCGCCTCAAGTGTCAGCAGCCGGATCATACAAGGCCAGGACTGCTCCCCACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS TCA 90 bp | TGCAGGAGTCCTTTTGGTCCTGTCCTCCTCCAGCGCAGAACATACTaGGGTGGTACACAGGGTCATACAGCAGCCGGCAAGTCTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: CRSPFGPVLLQRRTY*GGTQGHTAAGKSPL Trigger: CAGAGGAGACTTGCCGGCTGCTGTATGACCCTGTGTACCACCTCAGTATGTTCTGCGCTGGAGGAGGACAGGACCAAAAGGACTCCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | CTGAGTCTCAGGTTCCCTCAGCAGGCTTCATGTGGGCCTTGTAGTCAGTCCATACCGGCTGCCAGGCTCTaGGGAGCCTTTCAGGTTATG | + |
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Preference number: 5 (lower is better) Translates to: LSLRFPQQASCGPCSQSIPAARL*GAFQVM Trigger: CATAACCTGAAAGGCTCCCAAGAGCCTGGCAGCCGG...TATGGACTGACTACAAGGCCCACATGAAGCCTGCTGAGGGAACCTGAGACTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | ACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGGCTGCCCACACTTTCCTaGTCCCATAGACACGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: TLHTEENAGGFHSCVPGRLPTLS*SHRHEP Trigger: GGGCTCGTGTCTATGGGACAAGGAAAGTGTGGGCAG...CCTCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | GGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGGAGAAGGATCGTTGAAGTaGGGGTGCTGGATGGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: GHCTQRKMQVGSTPVFQGEGSLK*GCWMER Trigger: CCTCTCCATCCAGCACCCCAACTTCAACGATCCTTC...TCCCTGGAACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | CTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGTTCCAGGAGTGGGGCATaGGGTAGCCACAGGGATGCT | + |
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Preference number: 5 (lower is better) Translates to: LLEDTAHRGKCRWVPLLCSRSGA*GSHRDA Trigger: AGCATCCCTGTGGCTACCCAATGCCCCACTCCTGGA...ACACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | GCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCCTGTGATTGCAGGAGTCCTTTaGGTCCTGTCCTCCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: ATRGHCTQRKMQVGSTPVIAGVL*VLSSSS Trigger: GCTGGAGGAGGACAGGACCAAAAGGACTCCTGCAAT...CACAGGAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS TCA 90 bp | AGATTCACACACTGCAGGAGGCTGGGCAGTTTCCCATTCTTTAGTTaGCCCCAACCAGAGACTAGGCAGGTATCTCCAGGAGTGGGGCAT | + |
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Preference number: 5 (lower is better) Translates to: RFTHCRRLGSFPFFS*PQPETRQVSPGVGH Trigger: ATGCCCCACTCCTGGAGATACCTGCCTAGTCTCTGGTTGGGGTCAACTAAAGAATGGGAAACTGCCCAGCCTCCTGCAGTGTGTGAATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS GCA 90 bp | ATGAGCATGAGATCGTTTGCAAAAGAAGGATCGTTGAAGTTGGGGTaGTGGATGGAGAGGTGGGCCTCTAACATCCGGCTGCCAGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: MSMRSFAKEGSLKLG*WMERWASNIRLPGS Trigger: AGAGCCTGGCAGCCGGATGTTAGAGGCCCACCTCTCCATCCAGCACCCCAACTTCAACGATCCTTCTTTTGCAAACGATCTCATGCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS-3UTR CAA 90 bp | ACTGGGCTACTAGAGGACACTGCACACAGAGGAAAATGCAGGTGGGTTCCACTCACTGACTCGTTCAGTTaGATGAGCATGAGATCGTTT | + |
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Preference number: 5 (lower is better) Translates to: TGLLEDTAHRGKCRWVPLTDSFS*MSMRSF Trigger: AAACGATCTCATGCTCATCAAACTGAACGAGTCAGT...GAGTGGAACCCACCTGCATTTTCCTCTGTGTGCAGTGTCCTCTAGTAGCCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS TCA 72 bp | GCAGTCCTGGCCTTGTATGATCCGGCTGCTGACACTTaGGGCGGAGGCTCCTGTGACCTCAAGGATGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: AVLALYDPAADT*GGGSCDLKDEA Trigger: TGCCTCATCCTTGAGGTCACAGGAGCCTCCGCCTCAAGTGTCAGCAGCCGGATCATACAAGGCCAGGACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS CAA 90 bp | GTTGCACACTATGGGACCCCCAGAGTCCCCATTGCAGGAGTCCTTTaGGTCCTGTCCTCCTCCAGCGCAGAACATACTGAGGTGGTACAC | + |
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Preference number: 6 (lower is better) Translates to: VAHYGTPRVPIAGVL*VLSSSSAEHTEVVH Trigger: GTGTACCACCTCAGTATGTTCTGCGCTGGAGGAGGACAGGACCAAAAGGACTCCTGCAATGGGGACTCTGGGGGTCCCATAGTGTGCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS TCA 72 bp | CCTTTTGGTCCTGTCCTCCTCCAGCGCAGAACATACTaGGGTGGTACACAGGGTCATACAGCAGCCGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: PFGPVLLQRRTY*GGTQGHTAAGK Trigger: CTTGCCGGCTGCTGTATGACCCTGTGTACCACCTCAGTATGTTCTGCGCTGGAGGAGGACAGGACCAAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS CAA 72 bp | TATGGGACCCCCAGAGTCCCCATTGCAGGAGTCCTTTaGGTCCTGTCCTCCTCCAGCGCAGAACATACTGAG | + |
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Preference number: 6 (lower is better) Translates to: YGTPRVPIAGVL*VLSSSSAEHTE Trigger: CTCAGTATGTTCTGCGCTGGAGGAGGACAGGACCAAAAGGACTCCTGCAATGGGGACTCTGGGGGTCCCATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS CAA 72 bp | CCTTGTCCCATAGACACGAGCCCTTGTAGGGATCTGTaGCACACTATGGGACCCCCAGAGTCCCCATTGCAG | + |
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Preference number: 6 (lower is better) Translates to: PCPIDTSPCRDL*HTMGPPESPLQ Trigger: CTGCAATGGGGACTCTGGGGGTCCCATAGTGTGCAACAGATCCCTACAAGGGCTCGTGTCTATGGGACAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS TCA 72 bp | CACTGCAGGAGGCTGGGCAGTTTCCCATTCTTTAGTTaGCCCCAACCAGAGACTAGGCAGGTATCTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: HCRRLGSFPFFS*PQPETRQVSPG Trigger: TCCTGGAGATACCTGCCTAGTCTCTGGTTGGGGTCAACTAAAGAATGGGAAACTGCCCAGCCTCCTGCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS CCA 72 bp | CTGACGCCACTGAGAGATTCACACACTGCAGGAGGCTaGGCAGTTTCCCATTCTTTAGTTGACCCCAACCAG | + |
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Preference number: 6 (lower is better) Translates to: LTPLRDSHTAGG*AVSHSLVDPNQ Trigger: CTGGTTGGGGTCAACTAAAGAATGGGAAACTGCCCAGCCTCCTGCAGTGTGTGAATCTCTCAGTGGCGTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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| CDS CAA 90 bp | AGTTTGATGAGCATGAGATCGTTTGCAAAAGAAGGATCGTTGAAGTaGGGGTGCTGGATGGAGAGGTGGGCCTCTAACATCCGGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SLMSMRSFAKEGSLK*GCWMERWASNIRLP Trigger: TGGCAGCCGGATGTTAGAGGCCCACCTCTCCATCCAGCACCCCAACTTCAACGATCCTTCTTTTGCAAACGATCTCATGCTCATCAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007161.8 |
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