Pregenerated sensors for KLK1B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063133Ensembl transcript IDs: ENSMUST00000078835.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGAGCAGCATCAGGTCATAGCTGTAGTCGTCCTGAGGATTTTGGATaGGGTTCCGATGGAGGCTCATGTTGTAGCAAGGGTGAAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: GAASGHSCSRPEDFG*GSDGGSCCSKGEGS Trigger: GCTTCCTTCACCCTTGCTACAACATGAGCCTCCATCGGAACCGCATCCAAAATCCTCAGGACGACTACAGCTATGACCTGATGCTGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS TCA 90 bp | TCCGATGGAGGCTCATGTTGTAGCAAGGGTGAAGGAAGCTTTTGCTaGCTAATCGGTGCTGAGCAGAGGGTTCATCTTGGTATAGGTTGT | + |
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Preference number: 5 (lower is better) Translates to: SDGGSCCSKGEGSFC*LIGAEQRVHLGIGC Trigger: ACAACCTATACCAAGATGAACCCTCTGCTCAGCACCGATTAGTCAGCAAAAGCTTCCTTCACCCTTGCTACAACATGAGCCTCCATCGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS CCA 90 bp | TTAGGCAGGAGCTTGAGGTTCACACACTGGAGATCTTTTGCATATTaGAACTTGACAGGTATAATGCTGCCCCAGCCTGAGGCAAGGCAT | + |
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Preference number: 5 (lower is better) Translates to: LGRSLRFTHWRSFAY*NLTGIMLPQPEARH Trigger: ATGCCTTGCCTCAGGCTGGGGCAGCATTATACCTGTCAAGTTCCAATATGCAAAAGATCTCCAGTGTGTGAACCTCAAGCTCCTGCCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS GCA 90 bp | CTAATCGGTGCTGAGCAGAGGGTTCATCTTGGTATAGGTTGTTTTTaGCCAGCCAAACGTTGTTCTTTTCATAATAGCAGTGGGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LIGAEQRVHLGIGCF*PAKRCSFHNSSGQL Trigger: CAGCTGCCCACTGCTATTATGAAAAGAACAACGTTTGGCTGGGCAAAAACAACCTATACCAAGATGAACCCTCTGCTCAGCACCGATTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS CCA 90 bp | GCTTTGTCACAGTCCTCATTAGGCAGGAGCTTGAGGTTCACACACTaGAGATCTTTTGCATATTGGAACTTGACAGGTATAATGCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: ALSQSSLGRSLRFTH*RSFAYWNLTGIMLP Trigger: GGGCAGCATTATACCTGTCAAGTTCCAATATGCAAAAGATCTCCAGTGTGTGAACCTCAAGCTCCTGCCTAATGAGGACTGTGACAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS CAA 90 bp | CCATCACAGATCAGTGGGCCTCCTGAGTCTCCCTTACAAGTGTCTTaGCCTCCACCCTTCACTCCTGCACACAGCATGACATCTGTGACT | + |
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Preference number: 6 (lower is better) Translates to: PSQISGPPESPLQVS*PPPFTPAHSMTSVT Trigger: AGTCACAGATGTCATGCTGTGTGCAGGAGTGAAGGGTGGAGGCAAAGACACTTGTAAGGGAGACTCAGGAGGCCCACTGATCTGTGATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS GCA 72 bp | TCAGGTCATAGCTGTAGTCGTCCTGAGGATTTTGGATaGGGTTCCGATGGAGGCTCATGTTGTAGCAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: SGHSCSRPEDFG*GSDGGSCCSKG Trigger: ACCCTTGCTACAACATGAGCCTCCATCGGAACCGCATCCAAAATCCTCAGGACGACTACAGCTATGACCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS CAA 72 bp | CAGCATCAGGTCATAGCTGTAGTCGTCCTGAGGATTTaGGATGCGGTTCCGATGGAGGCTCATGTTGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: QHQVIAVVVLRI*DAVPMEAHVVA Trigger: TGCTACAACATGAGCCTCCATCGGAACCGCATCCAAAATCCTCAGGACGACTACAGCTATGACCTGATGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS CAA 72 bp | AGGTTCACACACTGGAGATCTTTTGCATATTGGAACTaGACAGGTATAATGCTGCCCCAGCCTGAGGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: RFTHWRSFAYWN*TGIMLPQPEAR Trigger: CCTTGCCTCAGGCTGGGGCAGCATTATACCTGTCAAGTTCCAATATGCAAAAGATCTCCAGTGTGTGAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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| CDS CCA 72 bp | CAGTCCTCATTAGGCAGGAGCTTGAGGTTCACACACTaGAGATCTTTTGCATATTGGAACTTGACAGGTATA | + |
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Preference number: 6 (lower is better) Translates to: QSSLGRSLRFTH*RSFAYWNLTGI Trigger: TATACCTGTCAAGTTCCAATATGCAAAAGATCTCCAGTGTGTGAACCTCAAGCTCCTGCCTAATGAGGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078835.3 |
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