Pregenerated sensors for KLHL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070923Ensembl transcript IDs: ENSMUST00000094993.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGATTTTCCCATGTAATTCTCAGGCAGAAAGTATTCCCACAGTATTaGAGACTGAAGGTCTACTTTAGCACTGCCTTAAAGAAACCAGCT | + |
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Preference number: 1 (lower is better) Translates to: RFSHVILRQKVFPQY*RLKVYFSTALKKPA Trigger: AGCTGGTTTCTTTAAGGCAGTGCTAAAGTAGACCTTCAGTCTTCAATACTGTGGGAATACTTTCTGCCTGAGAATTACATGGGAAAATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACGCATGTCAGAGTGACTaGGGCAGGAGACTAAACTTA | + |
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Preference number: 2 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHACQSD*GRRLNL Trigger: TAAGTTTAGTCTCCTGCCTCAGTCACTCTGACATGC...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCCACCCATGATACACTaGAAAGGTATTACACCTTGG | + |
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Preference number: 2 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHPPMIH*KGITPW Trigger: CCAAGGTGTAATACCTTTTCAGTGTATCATGGGTGG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR CAA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTaGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: DLMQNRVYLFAQITA*RQLTHYRMLTSYLS Trigger: GCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR TCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGATAGGCATGTCAGAGTaGCTGAGGCAGGAGACTAAA | + |
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Preference number: 2 (lower is better) Translates to: DLMQNRVYLFAQITALRQIGMSE*LRQETK Trigger: TTTAGTCTCCTGCCTCAGTCACTCTGACATGCCTAT...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR GCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGTCACACATTACAGGATaGTTACCAGCTACCTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: DLMQNRVYLFAQITALRQSHITG*LPATSA Trigger: TGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGA...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR TCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGAACAATACAAGGGGATaGACAAGACCACCCATGATA | + |
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Preference number: 2 (lower is better) Translates to: DLMQNRVYLFAQITALRQNNTRG*TRPPMI Trigger: TATCATGGGTGGTCTTGTTCATCCCCTTGTATTGTT...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR CCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCTAAACTTAAAATCCTaGAGCTTTGTTGAGAATGCT | + |
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Preference number: 2 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHLNLKS*SFVENA Trigger: AGCATTCTCAACAAAGCTCCAGGATTTTAAGTTTAG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR CAA 90 bp | GCTGGTTCTATTTTTGAGTCAAGGCTAAAAAGGCGTAATTCTGATTaGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: AGSIFESRLKRRNSD*MQNRVYLFAQITAL Trigger: CAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATCAGAATTACGCCTTTTTAGCCTTGACTCAAAAATAGAACCAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR-3UTR CAA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACAATCCTGGAGCTTTGTaGAGAATGCTTCTATGCCTT | + |
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Preference number: 3 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHNPGAL*RMLLCL Trigger: AAGGCATAGAAGCATTCTCAACAAAGCTCCAGGATT...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR TCA 72 bp | AGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTaGGGCAGCTCACACATTACAGGATGCTTACCAGCT | + |
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Preference number: 3 (lower is better) Translates to: RTGCICLLRSQP*GSSHITGCLPA Trigger: AGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR TCA 72 bp | AGGCAGGAGACTAAACTTAAAATCCTGGAGCTTTGTTaGGAATGCTTCTATGCCTTCCTTAACTCCCGATTT | + |
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Preference number: 3 (lower is better) Translates to: RQETKLKILELC*ECFYAFLNSRF Trigger: AAATCGGGAGTTAAGGAAGGCATAGAAGCATTCTCAACAAAGCTCCAGGATTTTAAGTTTAGTCTCCTGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR TCA 72 bp | CATGTAATTCTCAGGCAGAAAGTATTCCCACAGTATTaGAGACTGAAGGTCTACTTTAGCACTGCCTTAAAG | + |
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Preference number: 3 (lower is better) Translates to: HVILRQKVFPQY*RLKVYFSTALK Trigger: CTTTAAGGCAGTGCTAAAGTAGACCTTCAGTCTTCAATACTGTGGGAATACTTTCTGCCTGAGAATTACATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR GCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGCCAGACTTGCAAGGCTaGAGGTGGGCAGAGACGCCC | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQPDLQG*RWAETP Trigger: GGGCGTCTCTGCCCACCTGCAGCCTTGCAAGTCTGG...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACACTCCAACATCACTCTaGCCTCTCAGCATAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHTPTSL*PLSIAA Trigger: TGCTGCTATGCTGAGAGGTCAGAGTGATGTTGGAGT...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR GCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGCAGCCAGCGGCAGGCTaGCTTGAAGAGCTCAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQQPAAG*LEELKF Trigger: GAACTTGAGCTCTTCAAGGCAGCCTGCCGCTGGCTG...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACTGTAACATTCTACTGTaGCCAGTTCACCAGCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHCNILL*PVHQLH Trigger: GTGCAGCTGGTGAACTGGCCACAGTAGAATGTTACA...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCCACTGGTCAAGAGTTaGCGAATAGTATTCGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHPLVKS*RIVFAA Trigger: AGCTGCGAATACTATTCGCCAACTCTTGACCAGTGG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCAGCATAGCAGCAATTaGTGTCCACTGGTCAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHQHSSN*CPLVKS Trigger: ACTCTTGACCAGTGGACACCAATTGCTGCTATGCTG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCCCTCTATTCTGAGCTaGTCAAAGCCTTGCAATACA | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHPSILS*SKPCNT Trigger: TGTATTGCAAGGCTTTGATCAGCTCAGAATAGAGGG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGTGGCAGACGCCATCATaGCTCTATGAACCGGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQWQTPS*LYEPGR Trigger: TCTTCCCGGTTCATAGAGCCATGATGGCGTCTGCCA...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR CAA 72 bp | CAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTaGAGGCAGCTCACACATTACAGGATGCTTACCAGC | + |
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Preference number: 4 (lower is better) Translates to: QNRVYLFAQITA*RQLTHYRMLTS Trigger: GCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGGTAGGCCCTCTATTCTaGGCTGATCAAAGCCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQVGPLF*ADQSLA Trigger: TGCAAGGCTTTGATCAGCTCAGAATAGAGGGCCTAC...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGGCCATCATGGCTCTATaGACCGGGAAGATTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQAIMAL*TGKISS Trigger: AGAGGAAATCTTCCCGGTTCATAGAGCCATGATGGC...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCATATAAATGTCCTTTaGGGGCACTCAGGTGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHHINVL*GHSGER Trigger: TCTTTCACCTGAGTGCCCTCAAAGGACATTTATATG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACGGAAAGTGTCATGAGTaGTTCCTCCGGAAATATACA | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHGKCHE*FLRKYT Trigger: TGTATATTTCCGGAGGAATCACTCATGACACTTTCC...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR GCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACGGGTTCACTCATCTTTaGAACGTAGCTCCATTCATT | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHGFTHL*NVAPFI Trigger: AATGAATGGAGCTACGTTGCAAAGATGAGTGAACCC...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACTTCGTAACTCTTTACTaGCAACTAGCTGTTGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHFVTLY*QLAVVS Trigger: TGAGACAACAGCTAGTTGTCAGTAAAGAGTTACGAA...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CCA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCCACTCGTCTTTTTCTaGGTCATATTTCTGGACAAT | + |
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Preference number: 4 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHPLVFF*VIFLDN Trigger: ATTGTCCAGAAATATGACCCAGAAAAAGACGAGTGG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGTCACCCCATGAAGCTTaGTGCACATCAAATCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQSPHEA*CTSNLS Trigger: AGAAAGATTTGATGTGCATCAAGCTTCATGGGGTGA...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR TCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGACTTTGTTCACCCCATaGAGCTTGATGCACATCAAA | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQTLFTP*SLMHIK Trigger: TTTGATGTGCATCAAGCTTCATGGGGTGAACAAAGT...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGTCTGGGTCATATTTCTaGACAATTTCTACCATGCAC | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQSGSYF*TISTMH Trigger: GTGCATGGTAGAAATTGTCCAGAAATATGACCCAGA...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR GCA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGTCAGGTGAAAGAATGTaGGCTTTTCGTTTAATGATG | + |
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Preference number: 4 (lower is better) Translates to: DLMQNRVYLFAQITALRQSGERM*AFRLMM Trigger: CATCATTAAACGAAAAGCGCACATTCTTTCACCTGA...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| 3UTR CAA 72 bp | ATTTTTGAGTCAAGGCTAAAAAGGCGTAATTCTGATTaGATGCAGAACAGGGTGTATCTGTTTGCTCAGATC | + |
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Preference number: 4 (lower is better) Translates to: IFESRLKRRNSD*MQNRVYLFAQI Trigger: GATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATCAGAATTACGCCTTTTTAGCCTTGACTCAAAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CAA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACCGCGTAGTTCCAGACTaGCAAGGCTGCAGGTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHRVVPD*QGCRWA Trigger: TGCCCACCTGCAGCCTTGCAAGTCTGGAACTACGCG...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS TCA 90 bp | CATCGCCAGGTACCAGCGTCACGTCACAAAGTAGGCCCTCTATTCTaGGCTGATCAAAGCCTTGCAATACAACCGAACTGTGCGTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: HRQVPASRHKVGPLF*ADQSLAIQPNCACC Trigger: GCAACACGCACAGTTCGGTTGTATTGCAAGGCTTTGATCAGCTCAGAATAGAGGGCCTACTTTGTGACGTGACGCTGGTACCTGGCGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CAA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACGAGCTGATCAAAGCCTaGCAATACAACCGAACTGTG | + |
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Preference number: 5 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHELIKA*QYNRTV Trigger: CACAGTTCGGTTGTATTGCAAGGCTTTGATCAGCTC...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CAA 90 bp | CACAGCCTTGAGGCAGCTCACACATTACAGGATGCTTACCAGCTACCTCAGCACGGGGTTCACTCATCTTaGCAACGTAGCTCCATTCAT | + |
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Preference number: 5 (lower is better) Translates to: HSLEAAHTLQDAYQLPQHGVHSS*QRSSIH Trigger: ATGAATGGAGCTACGTTGCAAAGATGAGTGAACCCC...GTGCTGAGGTAGCTGGTAAGCATCCTGTAATGTGTGAGCTGCCTCAAGGCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CAA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGTCCACTGGTCAAGAGTaGGCGAATAGTATTCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: DLMQNRVYLFAQITALRQSTGQE*ANSIRS Trigger: GCTGCGAATACTATTCGCCAACTCTTGACCAGTGGA...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS-3UTR CAA 90 bp | GATTTGATGCAGAACAGGGTGTATCTGTTTGCTCAGATCACAGCCTTGAGGCAGGCCTTCTGTGTCCATTaGTCTGTATCTGGGTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: DLMQNRVYLFAQITALRQAFCVH*SVSGSK Trigger: TTTTGACCCAGATACAGACAAATGGACACAGAAGGC...CTGCCTCAAGGCTGTGATCTGAGCAAACAGATACACCCTGTTCTGCATCAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS TCA 90 bp | CTGACAACTAGCTGTTGTCTCAAAACTCCTCCTAAGGTAACCAAATaGGTAGAATCAGATCGAATGGCAGTTCTGTCCGACTGCATCACC | + |
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Preference number: 5 (lower is better) Translates to: LTTSCCLKTPPKVTK*VESDRMAVLSDCIT Trigger: GGTGATGCAGTCGGACAGAACTGCCATTCGATCTGATTCTACTCATTTGGTTACCTTAGGAGGAGTTTTGAGACAACAGCTAGTTGTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS TCA 90 bp | GTTAGCAATCCGGCCAACCTCCACACAGTTATCCAAAGAGACGCCTaGTATAAGAAATACTTTACAAAAATCCAAAACCGGCAAGATCTG | + |
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Preference number: 5 (lower is better) Translates to: VSNPANLHTVIQRDA*YKKYFTKIQNRQDL Trigger: CAGATCTTGCCGGTTTTGGATTTTTGTAAAGTATTTCTTATATCAGGCGTCTCTTTGGATAACTGTGTGGAGGTTGGCCGGATTGCTAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS CCA 72 bp | AAAAACCGCGTAGTTCCAGACTTGCAAGGCTGCAGGTaGGCAGAGACGCCCATGTCGCCGTTACCCAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: KNRVVPDLQGCR*AETPMSPLPRD Trigger: GTCTCTGGGTAACGGCGACATGGGCGTCTCTGCCCACCTGCAGCCTTGCAAGTCTGGAACTACGCGGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS TCA 72 bp | GTACCAGCGTCACGTCACAAAGTAGGCCCTCTATTCTaGGCTGATCAAAGCCTTGCAATACAACCGAACTGT | + |
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Preference number: 6 (lower is better) Translates to: VPASRHKVGPLF*ADQSLAIQPNC Trigger: ACAGTTCGGTTGTATTGCAAGGCTTTGATCAGCTCAGAATAGAGGGCCTACTTTGTGACGTGACGCTGGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS TCA 72 bp | CCTGCGCCCTTTCGTCGTACATTCGTAACTCTTTACTaGCAACTAGCTGTTGTCTCAAAACTCCTCCTAAGG | + |
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Preference number: 6 (lower is better) Translates to: PAPFRRTFVTLY*QLAVVSKLLLR Trigger: CCTTAGGAGGAGTTTTGAGACAACAGCTAGTTGTCAGTAAAGAGTTACGAATGTACGACGAAAGGGCGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS TCA 72 bp | AGCTGTTGTCTCAAAACTCCTCCTAAGGTAACCAAATaGGTAGAATCAGATCGAATGGCAGTTCTGTCCGAC | + |
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Preference number: 6 (lower is better) Translates to: SCCLKTPPKVTK*VESDRMAVLSD Trigger: GTCGGACAGAACTGCCATTCGATCTGATTCTACTCATTTGGTTACCTTAGGAGGAGTTTTGAGACAACAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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| CDS CCA 72 bp | TACAAAAATCCAAAACCGGCAAGATCTGTAGAAAGCTaGCAGCTTCAAGAGTGTCCTGAAGATTGTCCATAT | + |
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Preference number: 6 (lower is better) Translates to: YKNPKPARSVES*QLQECPEDCPY Trigger: ATATGGACAATCTTCAGGACACTCTTGAAGCTGCCAGCTTTCTACAGATCTTGCCGGTTTTGGATTTTTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094993.3 |
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