RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLHL8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029312

Ensembl transcript IDs: ENSMUST00000031254.9, ENSMUST00000112811.8, ENSMUST00000112815.8, ENSMUST00000131843.2

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTAGTTAAACAGTCACACACGGCCACACCGGCACCAGCTCGGCAGTaGGACACAGGTCCGACCAGCTCCCACTTGTTCAGCACGGGGTCA +
Preference number: 1 (lower is better)
Translates to: LVKQSHTATPAPARQ*DTGPTSSHLFSTGS
Trigger: TGACCCCGTGCTGAACAAGTGGGAGCTGGTCGGACCTGTGTCTCACTGCCGAGCTGGTGCCGGTGTGGCCGTGTGTGACTGTTTAACTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 90 bp CATCACTGTTGCGATCCCTACGCCACCCCTGGGAGTGGTAAGAGCTaGCACATAGTCCCACTTGTTGCTTCGAGGGTCGTACCGTTCCAC +
Preference number: 1 (lower is better)
Translates to: HHCCDPYATPGSGKS*HIVPLVASRVVPFH
Trigger: GTGGAACGGTACGACCCTCGAAGCAACAAGTGGGACTATGTGGCAGCTCTTACCACTCCCAGGGGTGGCGTAGGGATCGCAACAGTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 90 bp AGAGGGTCAAACATCTCCATGCTGCCCAGGTGTTCGTTCCCATCATaGCCACCCACTGCGTACACCTTCCCTTCCACAGAGATCACACCC +
Preference number: 1 (lower is better)
Translates to: RGSNISMLPRCSFPS*PPTAYTFPSTEITP
Trigger: GGGTGTGATCTCTGTGGAAGGGAAGGTGTACGCAGTGGGTGGCCATGATGGGAACGAACACCTGGGCAGCATGGAGATGTTTGACCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 90 bp TCACTTCTATCCACTTGTCCAGATGCGGGTGATACCTCTCCACACTaGATAAGGAGGCTACGCCGTCGTTGCCGCCCACTGCGTAAACGT +
Preference number: 1 (lower is better)
Translates to: SLLSTCPDAGDTSPH*IRRLRRRCRPLRKR
Trigger: ACGTTTACGCAGTGGGCGGCAACGACGGCGTAGCCTCCTTATCCAGTGTGGAGAGGTATCACCCGCATCTGGACAAGTGGATAGAAGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 90 bp ACGGGGTCAAACGCCTCCACGGTGTTTAGGTACGCGTTGCCATTGTaGCCGCCAACTGCAAAGATTTTGCCCATCACTGTTGCGATCCCT +
Preference number: 1 (lower is better)
Translates to: TGSNASTVFRYALPL*PPTAKILPITVAIP
Trigger: AGGGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTACCTAAACACCGTGGAGGCGTTTGACCCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 90 bp GTTGCCATTGTGACCGCCAACTGCAAAGATTTTGCCCATCACTGTTaGGATCCCTACGCCACCCCTGGGAGTGGTAAGAGCTGCCACATA +
Preference number: 1 (lower is better)
Translates to: VAIVTANCKDFAHHC*DPYATPGSGKSCHI
Trigger: TATGTGGCAGCTCTTACCACTCCCAGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 90 bp CCAACGCCTCCACGGGGAGTGTTCATTGGTGCCACTGTGCTCCATTaGTCAGATTCGATGTCGTATCTCTCCACGTCACTGAAGCACGTA +
Preference number: 1 (lower is better)
Translates to: PTPPRGVFIGATVLH*SDSMSYLSTSLKHV
Trigger: TACGTGCTTCAGTGACGTGGAGAGATACGACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 90 bp GAATGGGTTCAAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTaGAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTCTCAC +
Preference number: 1 (lower is better)
Translates to: EWVQDGLLPARSTVC*SRKELTWLYDNSSH
Trigger: GTGAGAGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCCATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR GCA 90 bp TGTTCAGCACGGGGTCAAACGCCTCCACGGTGTTTAGGTACGCGTTaGCATTGTGACCGCCAACTGCAAAGATTTTGCCCATCACTGTTG +
Preference number: 1 (lower is better)
Translates to: CSARGQTPPRCLGTR*HCDRQLQRFCPSLL
Trigger: CAACAGTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTACCTAAACACCGTGGAGGCGTTTGACCCCGTGCTGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 90 bp TTGCTGGGACTTCATCACATACAGTCAACCACATTAGTGGACCCGTaGCCCACGTCTCGGATCTGGCTAGTTAAACAGTCACACACGGCC +
Preference number: 1 (lower is better)
Translates to: LLGLHHIQSTTLVDP*PTSRIWLVKQSHTA
Trigger: GGCCGTGTGTGACTGTTTAACTAGCCAGATCCGAGACGTGGGTCACGGGTCCACTAATGTGGTTGACTGTATGTGATGAAGTCCCAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 90 bp TGTCGTCAAAACCACCAACAACATATAAACAACCGTGAAGCTCGCTaGCGCCGTTGCCAGCTCTGCGCTGACCCATCTCTTTCACTTCTA +
Preference number: 1 (lower is better)
Translates to: CRQNHQQHINNREAR*RRCQLCADPSLSLL
Trigger: TAGAAGTGAAAGAGATGGGTCAGCGCAGAGCTGGCAACGGCGTCAGCGAGCTTCACGGTTGTTTATATGTTGTTGGTGGTTTTGACGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 90 bp CTGTGCTCCATTGGTCAGATTCGATGTCGTATCTCTCCACGTCACTaGAGCACGTATTGTCATCTAATCCTCCAATTGCATATATTGGGC +
Preference number: 1 (lower is better)
Translates to: LCSIGQIRCRISPRH*STYCHLILQLHILG
Trigger: GCCCAATATATGCAATTGGAGGATTAGATGACAATACGTGCTTCAGTGACGTGGAGAGATACGACATCGAATCTGACCAATGGAGCACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 90 bp CTCATGTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTaGCTGAAGTTAGTTTCTTCAGGAAAAAGAATAGATGAAACTCAA +
Preference number: 1 (lower is better)
Translates to: LMLMSGHLSPLGKTY*LKLVSSGKRIDETQ
Trigger: TTGAGTTTCATCTATTCTTTTTCCTGAAGAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAACATGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp AGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACTTTGCCCATCACTGTTaGGATCCCTACGCCACCCCT +
Preference number: 2 (lower is better)
Translates to: RWTWASHTLCLFTGRHTNFAHHC*DPYATP
Trigger: AGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAA...GTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 90 bp GCCAACGCCTCCACGGGGAGTGTTCATTGGTGCCACTGTGCTCCATaGGTCAGATTCGATGTCGTATCTCTCCACGTCACTGAAGCACGT +
Preference number: 2 (lower is better)
Translates to: ANASTGSVHWCHCAP*VRFDVVSLHVTEAR
Trigger: ACGTGCTTCAGTGACGTGGAGAGATACGACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp TCCCTCCCTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGATTGTGACCGCCAACTaGAAAGATTTTGCCCATCAC +
Preference number: 2 (lower is better)
Translates to: SLPRWTWASHTLCLFTGRIVTAN*KDFAHH
Trigger: GTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAAT...CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp AGTTCAAGGAACCTCCCCATTCCCTCCCTAGGTGGACATGGGCGTCACACACCCAGAAATTCTCCCGGGTaGGAAAAGAATAGCAGCCAC +
Preference number: 2 (lower is better)
Translates to: SSRNLPIPSLGGHGRHTPRNSPG*EKNSSH
Trigger: GTGGCTGCTATTCTTTTCCCACCCGGGAGAATTTCT...GGGTGTGTGACGCCCATGTCCACCTAGGGAGGGAATGGGGAGGTTCCTTGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp GTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCATTCAGGGAGTGGTAAGAGCTaGCACATAGTCCCACTTGTT +
Preference number: 2 (lower is better)
Translates to: VTHPLSFHWAAHERGSHSGSGKS*HIVPLV
Trigger: AACAAGTGGGACTATGTGGCAGCTCTTACCACTCCC...TGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp TGCCAGCTCTGCGCTGACCCATCTCTTTCACTTCTATCCACTTGTCCAGATGCGCACAGTCAAAAGGCCTaGTGTCTTCCTGTCCATCAG +
Preference number: 2 (lower is better)
Translates to: CQLCADPSLSLLSTCPDAHSQKA*CLPVHQ
Trigger: CTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTG...CGCATCTGGACAAGTGGATAGAAGTGAAAGAGATGGGTCAGCGCAGAGCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp GTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCATTCATCTCATGTTGATGAGTaGACATCTCTCTCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: VTHPLSFHWAAHERGSHSSHVDE*TSLSSG
Trigger: CCCAGAGGAGAGAGATGTCCACTCATCAACATGAGA...TGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR CAA 90 bp GGTTTATTAAAGCCACAGAGCCAACGCCTCCACGGGGAGTGTTCATaGGTGCCACTGTGCTCCATTGGTCAGATTCGATGTCGTATCTCT +
Preference number: 2 (lower is better)
Translates to: GLLKPQSQRLHGECS*VPLCSIGQIRCRIS
Trigger: AGAGATACGACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTGGCTCTGTGGCTTTAATAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 90 bp AAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTaGCTGGGACTTCATCACATACAGTCAACCACATTAGTGGACCCG +
Preference number: 2 (lower is better)
Translates to: KGLLSSCPSDGIVSL*LGLHHIQSTTLVDP
Trigger: CGGGTCCACTAATGTGGTTGACTGTATGTGATGAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp GTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTGCTCACAGTCAAAAGGCCTaGTGTCTTCCTGTCCATCAG +
Preference number: 2 (lower is better)
Translates to: VKRPAVFLSIRRDCVLVAHSQKA*CLPVHQ
Trigger: CTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTG...AGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp AGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCGGGTTCAAGATGGGCTaGTTCCAGCCCGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: RENGSSLQIQRQTQRTKFGFKMG*FQPAPL
Trigger: CAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCC...GAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp ACAGTCATCCCAAGAAATTCTCCCGGGTGGGAAAAGAATAGCAGCCACCAGACTCACAGTCAAAAGGCCTaGTGTCTTCCTGTCCATCAG +
Preference number: 2 (lower is better)
Translates to: TVIPRNSPGWEKNSSHQTHSQKA*CLPVHQ
Trigger: CTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTG...AGTCTGGTGGCTGCTATTCTTTTCCCACCCGGGAGAATTTCTTGGGATGACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp AGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGGTTCAAGATGGGCTaGTTCCAGCCCGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: RKWILAPNPTTNPKNEVQGFKMG*FQPAPL
Trigger: CAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCC...TTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp AGCAAGAATGGGTTCAAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTGAAAGGAAAGAGCTCACCTaGCTTTATGACAACAGCTCT +
Preference number: 2 (lower is better)
Translates to: SKNGFKMGCFQPAPLFAERKELT*LYDNSS
Trigger: AGAGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCT...TTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCCATTCTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp GGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGAGCTATTTTAAGGTTTaGCACTACATCAAACATCTC +
Preference number: 2 (lower is better)
Translates to: GGHGRHTPSVFSLGGTRTSYFKV*HYIKHL
Trigger: GAGATGTTTGATGTAGTGCCAAACCTTAAAATAGCT...CGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp CATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCAGCTATTTTAAGGTTTaGCACTACATCAAACATCTC +
Preference number: 2 (lower is better)
Translates to: HGRHTPSVFSLGGTRTRISYFKV*HYIKHL
Trigger: GAGATGTTTGATGTAGTGCCAAACCTTAAAATAGCT...GATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR CAA 90 bp TCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTaGTTGCTGGGACTTCATCACATACAGTCAACCACATTAGTGGAC +
Preference number: 2 (lower is better)
Translates to: SKGLLSSCPSDGIVS*LLGLHHIQSTTLVD
Trigger: GTCCACTAATGTGGTTGACTGTATGTGATGAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 90 bp AGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATaGTGTCCTTGTTGCTGGGACTTCATCACATACAGTCAACCACAT +
Preference number: 2 (lower is better)
Translates to: SHSQKACCLPVHQTG*CPCCWDFITYSQPH
Trigger: ATGTGGTTGACTGTATGTGATGAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp ATGAATTCGTCAGCACCGTGTAGAATGATCCTCAAGGGAGCAGGCCTTAAGTTCTCATTGGTGCCACTGTaGTCCATTGGTCAGATTCGA +
Preference number: 2 (lower is better)
Translates to: MNSSAPCRMILKGAGLKFSLVPL*SIGQIR
Trigger: TCGAATCTGACCAATGGAGCACAGTGGCACCAATGA...GAACTTAAGGCCTGCTCCCTTGAGGATCATTCTACACGGTGCTGACGAATTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 90 bp TGGTCAGATTCGATGTCGTATCTCTCCACGTCACTGAAGCACGTATaGTCATCTAATCCTCCAATTGCATATATTGGGCCCCCTAAGGAG +
Preference number: 2 (lower is better)
Translates to: WSDSMSYLSTSLKHV*SSNPPIAYIGPPKE
Trigger: CTCCTTAGGGGGCCCAATATATGCAATTGGAGGATTAGATGACAATACGTGCTTCAGTGACGTGGAGAGATACGACATCGAATCTGACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR TCA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAACAAAAAGCAAGACATaGATTCGTCAGCACCGTGTA +
Preference number: 2 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLETKSKT*IRQHRV
Trigger: TACACGGTGCTGACGAATTCATGTCTTGCTTTTTGT...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR TCA 90 bp AGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCTACGCGTTGCCATTGTaGCCGCCAACTGCAAAGATT +
Preference number: 2 (lower is better)
Translates to: RENGSSLQIQRQTQRTKFYALPL*PPTAKI
Trigger: AATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTA...GAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp GACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATGAGGAAAGAGCTCACCTaGCTTTATGACAACAGCTCT +
Preference number: 2 (lower is better)
Translates to: DFVRKPVQWCPVVLKLEMRKELT*LYDNSS
Trigger: AGAGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCT...CATTTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp TCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTCCCCATAGGAAAGAGCTCACCTaGCTTTATGACAACAGCTCT +
Preference number: 2 (lower is better)
Translates to: SLQIQRQTQRTKFKEPPHRKELT*LYDNSS
Trigger: AGAGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCT...ATGGGGAGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp GAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGTCTCATGTTGATGAGTaGACATCTCTCTCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: ENGSSLQIQRQTQRTKFKSHVDE*TSLSSG
Trigger: CCCAGAGGAGAGAGATGTCCACTCATCAACATGAGA...CTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR TCA 90 bp GAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGATCTCTCCACGTCACTaGAGCACGTATTGTCATCTA +
Preference number: 2 (lower is better)
Translates to: ENGSSLQIQRQTQRTKFKISPRH*STYCHL
Trigger: TAGATGACAATACGTGCTTCAGTGACGTGGAGAGAT...CTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR GCA 90 bp GATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTTTCCTTGGTGTTCATCGATaGCTTCATCATCCACTTGTT +
Preference number: 2 (lower is better)
Translates to: DEWTSLSSGKNLLPEVSFLGVHR*LHHPLV
Trigger: AACAAGTGGATGATGAAGGCATCGATGAACACCAAG...GAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp AGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAATCTCATGTTGATGAGTaGACATCTCTCTCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: RKWILAPNPTTNPKNEVQSHVDE*TSLSSG
Trigger: CCCAGAGGAGAGAGATGTCCACTCATCAACATGAGA...TTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR TCA 90 bp CGTTCCACGGAACTCAAAGGGGAGTTGTCGTCAAAACCACCAACAACATATAAAACAAAAAGCAAGACATaGATTCGTCAGCACCGTGTA +
Preference number: 2 (lower is better)
Translates to: RSTELKGELSSKPPTTYKTKSKT*IRQHRV
Trigger: TACACGGTGCTGACGAATTCATGTCTTGCTTTTTGT...TTTATATGTTGTTGGTGGTTTTGACGACAACTCCCCTTTGAGTTCCGTGGAACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CCA 90 bp CATGTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGAGTAAAGAGAAAATaGATCCTCGCTCCAAATCCA +
Preference number: 2 (lower is better)
Translates to: HVDEWTSLSSGKNLLPEVRVKRK*ILAPNP
Trigger: TGGATTTGGAGCGAGGATCCATTTTCTCTTTACTCT...AACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAACATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR CCA 72 bp GTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTaGGCGGCACACGAACGCGGATCTCATTCACCGGGC +
Preference number: 3 (lower is better)
Translates to: VDMGVTHPLSFH*AAHERGSHSPG
Trigger: GCCCGGTGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp TCCCTCCCTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGAGCCCGCTCCACTGTTaGCTGAAGCAGGAAAGAGCT +
Preference number: 3 (lower is better)
Translates to: SLPRWTWASHTLCLFTGRSPLHC*LKQERA
Trigger: AGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCT...CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp CTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGATTTTGCCCATCACTGTaGCGATCCCTACGCCACCCC +
Preference number: 3 (lower is better)
Translates to: LGGHGRHTPSVFSLGGTRFCPSL*RSLRHP
Trigger: GGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAA...TCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 72 bp TGCGATCCCTACGCCACCCCTGGGAGTGGTAAGAGCTaGCACATAGTCCCACTTGTTGCTTCGAGGGTCGTA +
Preference number: 3 (lower is better)
Translates to: CDPYATPGSGKS*HIVPLVASRVV
Trigger: TACGACCCTCGAAGCAACAAGTGGGACTATGTGGCAGCTCTTACCACTCCCAGGGGTGGCGTAGGGATCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 72 bp TTCAAGGAACCTCCCCATTCCCTCCCTAGGTGGACATaGGCGTCACACACCCTCTGTCTTTTCACTGGGCGG +
Preference number: 3 (lower is better)
Translates to: FKEPPHSLPRWT*ASHTLCLFTGR
Trigger: CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGAATGGGGAGGTTCCTTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR GCA 72 bp GTGACCGCCAACTGCAAAGATTTTGCCCATCACTGTTaGGATCCCTACGCCACCCCTGGGAGTGGTAAGAGC +
Preference number: 3 (lower is better)
Translates to: VTANCKDFAHHC*DPYATPGSGKS
Trigger: GCTCTTACCACTCCCAGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGGCGGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 72 bp ACGCGTTGCCATTGTGACCGCCAACTGCAAAGATTTTaGCCATCACTGTTGCGATCCCTACGCCACCCCTGG +
Preference number: 3 (lower is better)
Translates to: TRCHCDRQLQRF*PSLLRSLRHPW
Trigger: CCAGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAACGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 72 bp AGCCACAGAGCCAACGCCTCCACGGGGAGTGTTCATTaGTGCCACTGTGCTCCATTGGTCAGATTCGATGTC +
Preference number: 3 (lower is better)
Translates to: SHRANASTGSVH*CHCAPLVRFDV
Trigger: GACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTGGCTCTGTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp CATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCGGGATTGTGTCCTTGTaGCTGGGACTTCATCACATA +
Preference number: 3 (lower is better)
Translates to: HGRHTPSVFSLGGTRTRIGIVSL*LGLHHI
Trigger: TATGTGATGAAGTCCCAGCAACAAGGACACAATCCC...GATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 72 bp CGGGGTCAAACGCCTCCACGGTGTTTAGGTACGCGTTaGCATTGTGACCGCCAACTGCAAAGATTTTGCCCA +
Preference number: 3 (lower is better)
Translates to: RGQTPPRCLGTR*HCDRQLQRFCP
Trigger: TGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTACCTAAACACCGTGGAGGCGTTTGACCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp AGTTCAAGGAACCTCCCCATTCCCTCCCTAGGTGGACATGGGCGTCACACACCCGCCTTCATCATCCACTaGTTAGTGAGAGGGTCAAAC +
Preference number: 3 (lower is better)
Translates to: SSRNLPIPSLGGHGRHTPAFIIH*LVRGSN
Trigger: GTTTGACCCTCTCACTAACAAGTGGATGATGAAGGC...GGGTGTGTGACGCCCATGTCCACCTAGGGAGGGAATGGGGAGGTTCCTTGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 72 bp CAAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTaGAGCAGGAAAGAGCTCACCTGGCTTTATGACAAC +
Preference number: 3 (lower is better)
Translates to: QDGLLPARSTVC*SRKELTWLYDN
Trigger: GTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR GCA 72 bp CAACGCCTCCACGGGGAGTGTTCATTGGTGCCACTGTaGTCCATTGGTCAGATTCGATGTCGTATCTCTCCA +
Preference number: 3 (lower is better)
Translates to: QRLHGECSLVPL*SIGQIRCRISP
Trigger: TGGAGAGATACGACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 72 bp ACGAAGTTCAAGGAACCTCCCCATTCCCTCCCTAGGTaGACATGGGCGTCACACACCCTCTGTCTTTTCACT +
Preference number: 3 (lower is better)
Translates to: TKFKEPPHSLPR*TWASHTLCLFT
Trigger: AGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGAATGGGGAGGTTCCTTGAACTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR CCA 72 bp CCACGGGGAGTGTTCATTGGTGCCACTGTGCTCCATTaGTCAGATTCGATGTCGTATCTCTCCACGTCACTG +
Preference number: 3 (lower is better)
Translates to: PRGVFIGATVLH*SDSMSYLSTSL
Trigger: CAGTGACGTGGAGAGATACGACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp GACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATGCCGACCAGCTCCCACTaGTTCAGCACGGGGTCAAAC +
Preference number: 3 (lower is better)
Translates to: DFVRKPVQWCPVVLKLEMPTSSH*FSTGSN
Trigger: GTTTGACCCCGTGCTGAACAAGTGGGAGCTGGTCGG...CATTTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 72 bp AACCACCAACAACATATAAACAACCGTGAAGCTCGCTaGCGCCGTTGCCAGCTCTGCGCTGACCCATCTCTT +
Preference number: 3 (lower is better)
Translates to: NHQQHINNREAR*RRCQLCADPSL
Trigger: AAGAGATGGGTCAGCGCAGAGCTGGCAACGGCGTCAGCGAGCTTCACGGTTGTTTATATGTTGTTGGTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 72 bp ATCTCTTTCACTTCTATCCACTTGTCCAGATGCGGGTaGTACCTCTCCACACTGGATAAGGAGGCTACGCCG +
Preference number: 3 (lower is better)
Translates to: ISFTSIHLSRCG*YLSTLDKEATP
Trigger: CGGCGTAGCCTCCTTATCCAGTGTGGAGAGGTATCACCCGCATCTGGACAAGTGGATAGAAGTGAAAGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 72 bp AACGCCTCCACGGTGTTTAGGTACGCGTTGCCATTGTaGCCGCCAACTGCAAAGATTTTGCCCATCACTGTT +
Preference number: 3 (lower is better)
Translates to: NASTVFRYALPL*PPTAKILPITV
Trigger: AACAGTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTACCTAAACACCGTGGAGGCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 72 bp GTTTGGCACTACATCAAACATCTCTCAGAGCAAGAATaGGTTCAAGATGGGCTGCTTCCAGCCCGCTCCACT +
Preference number: 3 (lower is better)
Translates to: VWHYIKHLSEQE*VQDGLLPARST
Trigger: AGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGCCAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp CATGTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGCCCGCTCCACTGTTaGCTGAAGCAGGAAAGAGCT +
Preference number: 3 (lower is better)
Translates to: HVDEWTSLSSGKNLLPEVSPLHC*LKQERA
Trigger: AGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCT...AACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAACATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp ATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACAGCCCGCTCCACTGTTaGCTGAAGCAGGAAAGAGCT +
Preference number: 3 (lower is better)
Translates to: MDPRSKSNDKPKERSSRNSPLHC*LKQERA
Trigger: AGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCT...GTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR-3UTR CAA 90 bp TGTGTCCTTGTTGCTGGGACTTCATCACATACAGTCAACCACATTAGTGGACCCCTCCAATTGCATATATaGGGCCCCCTAAGGAGGCCA +
Preference number: 3 (lower is better)
Translates to: CVLVAGTSSHTVNHISGPLQLHI*GPLRRP
Trigger: TGGCCTCCTTAGGGGGCCCAATATATGCAATTGGAG...GGGTCCACTAATGTGGTTGACTGTATGTGATGAAGTCCCAGCAACAAGGACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 72 bp TTCAAAAACAGTCGCTGCAGTCACAGTCAAAAGGCCTaGTGTCTTCCTGTCCATCAGACGGGATTGTGTCCT +
Preference number: 3 (lower is better)
Translates to: FKNSRCSHSQKA*CLPVHQTGLCP
Trigger: AGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACTGTTTTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR GCA 72 bp GGCCAAGGCAATTCCTCGCCTCTTGGTGTTCATCGATaGCTTCATCATCCACTTGTTAGTGAGAGGGTCAAA +
Preference number: 3 (lower is better)
Translates to: GQGNSSPLGVHR*LHHPLVSERVK
Trigger: TTTGACCCTCTCACTAACAAGTGGATGATGAAGGCATCGATGAACACCAAGAGGCGAGGAATTGCCTTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR TCA 72 bp CTTCATCACATACAGTCAACCACATTAGTGGACCCGTaGCCCACGTCTCGGATCTGGCTAGTTAAACAGTCA +
Preference number: 3 (lower is better)
Translates to: LHHIQSTTLVDP*PTSRIWLVKQS
Trigger: TGACTGTTTAACTAGCCAGATCCGAGACGTGGGTCACGGGTCCACTAATGTGGTTGACTGTATGTGATGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CCA 72 bp TCAAGGGAGCAGGCCTTAAGTTCTCATGTTGATGAGTaGACATCTCTCTCCTCTGGGAAAAACCTACTGCCT +
Preference number: 3 (lower is better)
Translates to: SREQALSSHVDE*TSLSSGKNLLP
Trigger: AGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAACATGAGAACTTAAGGCCTGCTCCCTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR TCA 72 bp TCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTaGCATTCAAAAACAGTCGCTGCAGTCACAGTCAAA +
Preference number: 3 (lower is better)
Translates to: SPVSPQTCIHNS*HSKTVAAVTVK
Trigger: TTTGACTGTGACTGCAGCGACTGTTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR GCA 72 bp GTGTATTCACAACAGCTGACATTCAAAAACAGTCGCTaGAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTC +
Preference number: 3 (lower is better)
Translates to: VYSQQLTFKNSR*SHSQKACCLPV
Trigger: GACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACTGTTTTTGAATGTCAGCTGTTGTGAATACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR CCA 72 bp ACCAGGACAGTGACAAATGACAGAGTAAAGAGAAAATaGATCCTCGCTCCAAATCCAACGACAAACCCAAAG +
Preference number: 3 (lower is better)
Translates to: TRTVTNDRVKRK*ILAPNPTTNPK
Trigger: CTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCTTTACTCTGTCATTTGTCACTGTCCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
3UTR TCA 72 bp ATTGGTCAGATTCGATGTCGTATCTCTCCACGTCACTaGAGCACGTATTGTCATCTAATCCTCCAATTGCAT +
Preference number: 3 (lower is better)
Translates to: IGQIRCRISPRH*STYCHLILQLH
Trigger: ATGCAATTGGAGGATTAGATGACAATACGTGCTTCAGTGACGTGGAGAGATACGACATCGAATCTGACCAAT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR GCA 72 bp ATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTaGCTGAAGTTAGTTTCTTCAGGAAAAAGAATAGAT +
Preference number: 3 (lower is better)
Translates to: MSGHLSPLGKTY*LKLVSSGKRID
Trigger: ATCTATTCTTTTTCCTGAAGAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp AAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCCAGGAGAGAGCCGTaGAAGTCCTTCCAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: KMGCFQPAPLFAEAGKSSPRREP*KSFQAS
Trigger: CGAGGCCTGGAAGGACTTTCACGGCTCTCTCCTGGG...TGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp GTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCATTCACCCAGGAGAGAGCCGTaGAAGTCCTTCCAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: VTHPLSFHWAAHERGSHSPRREP*KSFQAS
Trigger: CGAGGCCTGGAAGGACTTTCACGGCTCTCTCCTGGG...TGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CCA 90 bp TCCCTCCCTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGGAGGAGAGGAGCTTGTaGAGATGTTGCGGGGACACA +
Preference number: 4 (lower is better)
Translates to: SLPRWTWASHTLCLFTGREERSL*RCCGDT
Trigger: TGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTC...CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp GGTCGTACCGTTCCACGGAACTCAAAGGGGAGTTGTCGTCAAAACCACCAACAACCCAGGAGAGAGCCGTaGAAGTCCTTCCAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: GRTVPRNSKGSCRQNHQQPRREP*KSFQAS
Trigger: CGAGGCCTGGAAGGACTTTCACGGCTCTCTCCTGGG...TTGTTGGTGGTTTTGACGACAACTCCCCTTTGAGTTCCGTGGAACGGTACGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp CATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCGCCACAACACCCATaGGAAAATCAACTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: HGRHTPSVFSLGGTRTRISPQHP*ENQLAA
Trigger: TGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCGA...GATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AGTCGCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGAGACCTGCTCCTCACTTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SRCSHSQKACCLPVHQTGDLLLT*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAGGTC...TCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp ACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCATTCACCGCACCCACATGTCGCCTaGGGCTGTTCATTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: THPLSFHWAAHERGSHSPHPHVA*GCSFLV
Trigger: GACCAGAAATGAACAGCCGCAGGCGACATGTGGGTG...CGGTGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp AGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACATCAACTGGCAGCAATaGCAGACGGACCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: RWTWASHTLCLFTGRHTNINWQQ*QTDLQG
Trigger: ACCCTGAAGGTCCGTCTGCCATTGCTGCCAGTTGAT...GTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112811.8
CDS-3UTR TCA 90 bp AGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACTCGCCACAACACCCATaGGAAAATCAACTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: RWTWASHTLCLFTGRHTNSPQHP*ENQLAA
Trigger: TGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCGA...GTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AATGGGTTCAAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTGAAGCAGGATCGGTTGTGACTCTCTaGGAAGGCTCGTACAGCCAG +
Preference number: 4 (lower is better)
Translates to: NGFKMGCFQPAPLFAEAGSVVTL*EGSYSQ
Trigger: CTGGCTGTACGAGCCTTCGCAGAGAGTCACAACCGA...TCCTGCTTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTGCTGGGACTTCCACCCACATGTCGCCTaGGGCTGTTCATTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: ACCLPVHQTGLCPCCWDFHPHVA*GCSFLV
Trigger: GACCAGAAATGAACAGCCGCAGGCGACATGTGGGTG...GAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AGTCGCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTTGCCCATCACTGTTaGGATCCCTACGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: SRCSHSQKACCLPVHQTGFAHHC*DPYATP
Trigger: AGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAA...TCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
3UTR CAA 72 bp AAGCCACAGAGCCAACGCCTCCACGGGGAGTGTTCATaGGTGCCACTGTGCTCCATTGGTCAGATTCGATGT +
Preference number: 4 (lower is better)
Translates to: KPQSQRLHGECS*VPLCSIGQIRC
Trigger: ACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTGGCTCTGTGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp TTCAAAAACAGTCGCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCCCAGGAGAGAGCCGTaGAAGTCCTTCCAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: FKNSRCSHSQKACCLPVHPRREP*KSFQAS
Trigger: CGAGGCCTGGAAGGACTTTCACGGCTCTCTCCTGGG...ATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACTGTTTTTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp CTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACCACTTCAGTAAAGTaGTCACAGGCATACTGGTCC +
Preference number: 4 (lower is better)
Translates to: LGGHGRHTPSVFSLGGTRTTSVK*SQAYWS
Trigger: GGACCAGTATGCCTGTGAGCACTTTACTGAAGTGGT...TCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGATCATTGGTGCCACTGTaGTCCATTGGTCAGATTCGA +
Preference number: 4 (lower is better)
Translates to: LGGHGRHTPSVFSLGGTRSLVPL*SIGQIR
Trigger: TCGAATCTGACCAATGGAGCACAGTGGCACCAATGA...TCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp GTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTGCTCGCCCCTTTGTCACGTaGCTCCTAGCTTGTTTCCCA +
Preference number: 4 (lower is better)
Translates to: VKRPAVFLSIRRDCVLVARPFVT*LLACFP
Trigger: TGGGAAACAAGCTAGGAGTCACGTGACAAAGGGGCG...AGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp TCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGCGCCCCTTTGTCACGTaGCTCCTAGCTTGTTTCCCA +
Preference number: 4 (lower is better)
Translates to: SQSKGLLSSCPSDGIVSLRPFVT*LLACFP
Trigger: TGGGAAACAAGCTAGGAGTCACGTGACAAAGGGGCG...CAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp AGTCGCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATACGCGTTGCCATTGTaGCCGCCAACTGCAAAGATT +
Preference number: 4 (lower is better)
Translates to: SRCSHSQKACCLPVHQTGYALPL*PPTAKI
Trigger: AATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTA...TCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCAGGGAGTGGTAAGAGCTaGCACATAGTCCCACTTGTT +
Preference number: 4 (lower is better)
Translates to: KMGCFQPAPLFAEAGKSSGSGKS*HIVPLV
Trigger: AACAAGTGGGACTATGTGGCAGCTCTTACCACTCCC...TGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp TCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTTGCCCATCACTGTTaGGATCCCTACGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: SQSKGLLSSCPSDGIVSLFAHHC*DPYATP
Trigger: AGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAA...CAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGACAACTGCAAAGATTTTaGCCATCACTGTTGCGATCC +
Preference number: 4 (lower is better)
Translates to: LGGHGRHTPSVFSLGGTRQLQRF*PSLLRS
Trigger: GGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTG...TCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
3UTR CAA 72 bp TCCACGGGGAGTGTTCATTGGTGCCACTGTGCTCCATaGGTCAGATTCGATGTCGTATCTCTCCACGTCACT +
Preference number: 4 (lower is better)
Translates to: STGSVHWCHCAP*VRFDVVSLHVT
Trigger: AGTGACGTGGAGAGATACGACATCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAACGCCCCTTTGTCACGTaGCTCCTAGCTTGTTTCCCA +
Preference number: 4 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLERPFVT*LLACFP
Trigger: TGGGAAACAAGCTAGGAGTCACGTGACAAAGGGGCG...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp ACAGTCATCCCAAGAAATTCTCCCGGGTGGGAAAAGAATAGCAGCCACCAGACTCGCCCCTTTGTCACGTaGCTCCTAGCTTGTTTCCCA +
Preference number: 4 (lower is better)
Translates to: TVIPRNSPGWEKNSSHQTRPFVT*LLACFP
Trigger: TGGGAAACAAGCTAGGAGTCACGTGACAAAGGGGCG...AGTCTGGTGGCTGCTATTCTTTTCCCACCCGGGAGAATTTCTTGGGATGACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp ATGAATTCGTCAGCACCGTGTAGAATGATCCTCAAGGGAGCAGGCCTTAAGTTCCGCCATCACACTCACTaGCAGAGGACCTGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: MNSSAPCRMILKGAGLKFRHHTH*QRTCSS
Trigger: TGAGGAGCAGGTCCTCTGTCAGTGAGTGTGATGGCG...GAACTTAAGGCCTGCTCCCTTGAGGATCATTCTACACGGTGCTGACGAATTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp GTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCATTCAAGGCAGTTGGAGGGATaGAAGTGTAGCTGCATGTAT +
Preference number: 4 (lower is better)
Translates to: VTHPLSFHWAAHERGSHSRQLEG*KCSCMY
Trigger: ATACATGCAGCTACACTTTCATCCCTCCAACTGCCT...TGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATGGACCTGCTCCTCACTTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: DFVRKPVQWCPVVLKLEMDLLLT*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAGGTC...CATTTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CCA 90 bp GCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTACAGCCAGGCAGTTaGAGGGATGAAAGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: AAVTVKRPAVFLSIRRDCVQPGS*RDESVA
Trigger: AGCTACACTTTCATCCCTCCAACTGCCTGGCTGTAC...ACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp TCGTCAGCACCGTGTAGAATGATCCTCAAGGGAGCAGGCCTTAAGTTCTCATGTGAGGAGAGGAGCTTGTaGAGATGTTGCGGGGACACA +
Preference number: 4 (lower is better)
Translates to: SSAPCRMILKGAGLKFSCEERSL*RCCGDT
Trigger: TGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTC...ACATGAGAACTTAAGGCCTGCTCCCTTGAGGATCATTCTACACGGTGCTGACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp GCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTTGTCCACTGTTAAAGTaGGCCGTGAGGAGTAGACAA +
Preference number: 4 (lower is better)
Translates to: AAVTVKRPAVFLSIRRDCCPLLK*AVRSRQ
Trigger: TTGTCTACTCCTCACGGCTCACTTTAACAGTGGACA...ACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS-3UTR TCA 90 bp AATGGGTTCAAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTGAAGCAGGAATCTCTCCACGTCACTaGAGCACGTATTGTCATCTA +
Preference number: 4 (lower is better)
Translates to: NGFKMGCFQPAPLFAEAGISPRH*STYCHL
Trigger: TAGATGACAATACGTGCTTCAGTGACGTGGAGAGAT...TCCTGCTTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTTTCGACCTGCTCCTCACTTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: DEWTSLSSGKNLLPEVSFDLLLT*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAGGTC...GAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp GTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTGACCTGCTCCTCACTTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VDEWTSLSSGKNLLPEVSDLLLT*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAGGTC...ACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp CCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAACAGTCGCTGTCGGTTGTGACTCTCTaGGAAGGCTCGTACAGCCAG +
Preference number: 4 (lower is better)
Translates to: PSVHRRVFTTADIQKQSLSVVTL*EGSYSQ
Trigger: CTGGCTGTACGAGCCTTCGCAGAGAGTCACAACCGA...CAGCGACTGTTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATGTTTGCCCATCACTGTTaGGATCCCTACGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: DFVRKPVQWCPVVLKLEMFAHHC*DPYATP
Trigger: AGGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAA...CATTTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp GTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTGCTATTCACAACAAGCTCTaGCCACCAGCTCAACCTGCA +
Preference number: 4 (lower is better)
Translates to: VKRPAVFLSIRRDCVLVAIHNKL*PPAQPA
Trigger: TGCAGGTTGAGCTGGTGGCCAGAGCTTGTTGTGAAT...AGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS-3UTR CCA 90 bp TCGTCAGCACCGTGTAGAATGATCCTCAAGGGAGCAGGCCTTAAGTTCTCATGTACGGGGAGTGTTCATTaGTGCCACTGTGCTCCATTG +
Preference number: 4 (lower is better)
Translates to: SSAPCRMILKGAGLKFSCTGSVH*CHCAPL
Trigger: CAATGGAGCACAGTGGCACCAATGAACACTCCCCGT...ACATGAGAACTTAAGGCCTGCTCCCTTGAGGATCATTCTACACGGTGCTGACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp TTTATGACAACAGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGTGGCAAGAAGCCACTTaGTGGCAGCACTGTAGACCT +
Preference number: 4 (lower is better)
Translates to: FMTTALTRQSTDVYSQQLWQEAT*WQHCRP
Trigger: AGGTCTACAGTGCTGCCATCAAGTGGCTTCTTGCCA...CAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCTGTTGTCATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp GACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATGTGGCAAGAAGCCACTTaGTGGCAGCACTGTAGACCT +
Preference number: 4 (lower is better)
Translates to: DFVRKPVQWCPVVLKLEMWQEAT*WQHCRP
Trigger: AGGTCTACAGTGCTGCCATCAAGTGGCTTCTTGCCA...CATTTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp CTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGACTTCAGATTCTGCTTaGCGATCTGTTCTTTCGCCA +
Preference number: 4 (lower is better)
Translates to: LQSQSKGLLSSCPSDGIVTSDSA*RSVLSP
Trigger: TGGCGAAAGAACAGATCGTCAAGCAGAATCTGAAGT...CACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp GCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTTACGCGTTGCCATTGTaGCCGCCAACTGCAAAGATT +
Preference number: 4 (lower is better)
Translates to: APLFAEAGKSSPGFMTTAYALPL*PPTAKI
Trigger: AATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTA...AGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GTGTCCTGTAGTTCTGAAACTCGAAATGGAAGCGAAGGCCTTCTTACAGACACTCTCCTCACTTGCTGCTaGTGTTGCTGCTGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: VSCSSETRNGSEGLLTDTLLTCC*CCCCCW
Trigger: CCAACAGCAGCAGCAACAGCAGCAGCAAGTGAGGAG...AGTGTCTGTAAGAAGGCCTTCGCTTCCATTTCGAGTTTCAGAACTACAGGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp AGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAACTGCTCCTCACTTGCTaGTGCTGTTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: SSHPSVHRRVFTTADIQKLLLTC*CCCCCC
Trigger: ACAGCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAG...TTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp ACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCAAGATGGGCTGCTTCCAGCTGCTCCTCACTTGCTaGTGCTGTTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: TTSNISQSKNGFKMGCFQLLLTC*CCCCCC
Trigger: ACAGCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAG...CTGGAAGCAGCCCATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp CACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTCCGGGACTGGTTTACTaGTCAAGTGAAGGTGGTAAT +
Preference number: 4 (lower is better)
Translates to: HSQKACCLPVHQTGLCPCPGLVY*SSEGGN
Trigger: ATTACCACCTTCACTTGAGCAGTAAACCAGTCCCGG...ACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTCATAGTCCCACTTGTTaGTTCGAGGGTCGTACCGTT +
Preference number: 4 (lower is better)
Translates to: APLFAEAGKSSPGFMTTAHSPTC*FEGRTV
Trigger: AACGGTACGACCCTCGAAGCAACAAGTGGGACTATG...AGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp TCGTCAGCACCGTGTAGAATGATCCTCAAGGGAGCAGGCCTTAAGTTCTCATGTGGGAGTGGTAAGAGCTaGCACATAGTCCCACTTGTT +
Preference number: 4 (lower is better)
Translates to: SSAPCRMILKGAGLKFSCGSGKS*HIVPLV
Trigger: AACAAGTGGGACTATGTGGCAGCTCTTACCACTCCC...ACATGAGAACTTAAGGCCTGCTCCCTTGAGGATCATTCTACACGGTGCTGACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp TCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTCCCCATTGCTCACAGGCATACTaGTCCGCCATGTCCATTAGG +
Preference number: 4 (lower is better)
Translates to: SLQIQRQTQRTKFKEPPHCSQAY*SAMSIR
Trigger: CCTAATGGACATGGCGGACCAGTATGCCTGTGAGCA...ATGGGGAGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp GGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTATCAACTGGCAGCAATaGCAGACGGACCTGTGCAAG +
Preference number: 4 (lower is better)
Translates to: GSSLQIQRQTQRTKFKEPINWQQ*QTDLCK
Trigger: CTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGAT...AGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
3UTR CAA 72 bp AGCACGTATTGTCATCTAATCCTCCAATTGCATATATaGGGCCCCCTAAGGAGGCCAAGGCAATTCCTCGCC +
Preference number: 4 (lower is better)
Translates to: STYCHLILQLHI*GPLRRPRQFLA
Trigger: GGCGAGGAATTGCCTTGGCCTCCTTAGGGGGCCCAATATATGCAATTGGAGGATTAGATGACAATACGTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 72 bp CGAGGGTCGTACCGTTCCACGGAACTCAAAGGGGAGTaGTCGTCAAAACCACCAACAACATATAAACAACCG +
Preference number: 4 (lower is better)
Translates to: RGSYRSTELKGE*SSKPPTTYKQP
Trigger: CGGTTGTTTATATGTTGTTGGTGGTTTTGACGACAACTCCCCTTTGAGTTCCGTGGAACGGTACGACCCTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 72 bp CTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTaGTTGCTGGGACTTCATCACATACAGTCAACCACA +
Preference number: 4 (lower is better)
Translates to: LLSSCPSDGIVS*LLGLHHIQSTT
Trigger: TGTGGTTGACTGTATGTGATGAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
3UTR CAA 72 bp CAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATaGTGTCCTTGTTGCTGGGACTTCATCACATACAGT +
Preference number: 4 (lower is better)
Translates to: QKACCLPVHQTG*CPCCWDFITYS
Trigger: ACTGTATGTGATGAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
CDS-3UTR TCA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAAGGCAGTTGGAGGGATaGAAGTGTAGCTGCATGTAT +
Preference number: 4 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLERQLEG*KCSCMY
Trigger: ATACATGCAGCTACACTTTCATCCCTCCAACTGCCT...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp GGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTTCGCCACAACACCCATaGGAAAATCAACTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: GSSLQIQRQTQRTKFKEPSPQHP*ENQLAA
Trigger: TGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCGA...AGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp CACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTACTTCAGATTCTGCTTaGCGATCTGTTCTTTCGCCA +
Preference number: 4 (lower is better)
Translates to: HSQKACCLPVHQTGLCPCTSDSA*RSVLSP
Trigger: TGGCGAAAGAACAGATCGTCAAGCAGAATCTGAAGT...ACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGCTCCTCACTTGCTGCTaGTGTTGCTGCTGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: ENGSSLQIQRQTQRTKFKLLTCC*CCCCCW
Trigger: CCAACAGCAGCAGCAACAGCAGCAGCAAGTGAGGAG...CTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp AGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCCTCCTCACTTGCTGCTaGTGTTGCTGCTGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: RENGSSLQIQRQTQRTKFLLTCC*CCCCCW
Trigger: CCAACAGCAGCAGCAACAGCAGCAGCAAGTGAGGAG...GAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp AGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCCACCCACATGTCGCCTaGGGCTGTTCATTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: RENGSSLQIQRQTQRTKFHPHVA*GCSFLV
Trigger: GACCAGAAATGAACAGCCGCAGGCGACATGTGGGTG...GAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAAGGGAGTGTTCATTGGTaGCACTGTGCTCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: SSHPSVHRRVFTTADIQKGSVHW*HCAPLV
Trigger: GACCAATGGAGCACAGTGGCACCAATGAACACTCCC...TTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp TCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTCCCCATGTACAGCCAGGCAGTTaGAGGGATGAAAGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: SLQIQRQTQRTKFKEPPHVQPGS*RDESVA
Trigger: AGCTACACTTTCATCCCTCCAACTGCCTGGCTGTAC...ATGGGGAGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp GATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTTTCTGCTCACAGGCATACTaGTCCGCCATGTCCATTAGG +
Preference number: 4 (lower is better)
Translates to: DEWTSLSSGKNLLPEVSFCSQAY*SAMSIR
Trigger: CCTAATGGACATGGCGGACCAGTATGCCTGTGAGCA...GAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp GTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTATCAACTGGCAGCAATaGCAGACGGACCTGTGCAAG +
Preference number: 4 (lower is better)
Translates to: VDEWTSLSSGKNLLPEVSINWQQ*QTDLCK
Trigger: CTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGAT...ACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp TGGCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCAAGATGGGCTGCTTACGGGGAGTGTTCATTaGTGCCACTGTGCTCCATTG +
Preference number: 4 (lower is better)
Translates to: WHYIKHLSEQEWVQDGLLTGSVH*CHCAPL
Trigger: CAATGGAGCACAGTGGCACCAATGAACACTCCCCGT...AAGCAGCCCATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp GCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTATTCACAACAAGCTCTaGCCACCAGCTCAACCTTCA +
Preference number: 4 (lower is better)
Translates to: APLFAEAGKSSPGFMTTAIHNKL*PPAQPS
Trigger: TGAAGGTTGAGCTGGTGGCCAGAGCTTGTTGTGAAT...AGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATCTCTCCACGTCACTaGAGCACGTATTGTCATCTA +
Preference number: 4 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLEISPRH*STYCHL
Trigger: TAGATGACAATACGTGCTTCAGTGACGTGGAGAGAT...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTCCGGGACTGGTTTACTaGTCAAGTGAAGGTGGTAAT +
Preference number: 4 (lower is better)
Translates to: GSSLQIQRQTQRTKFKEPPGLVY*SSEGGN
Trigger: ATTACCACCTTCACTTGAGCAGTAAACCAGTCCCGG...AGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAACAGTCGCTGCCGGGACTGGTTTACTaGTCAAGTGAAGGTGGTAAT +
Preference number: 4 (lower is better)
Translates to: PSVHRRVFTTADIQKQSLPGLVY*SSEGGN
Trigger: ATTACCACCTTCACTTGAGCAGTAAACCAGTCCCGG...CAGCGACTGTTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp TTTATGACAACAGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGTCATTGGTGCCACTGTaGTCCATTGGTCAGATTCGA +
Preference number: 4 (lower is better)
Translates to: FMTTALTRQSTDVYSQQLSLVPL*SIGQIR
Trigger: TCGAATCTGACCAATGGAGCACAGTGGCACCAATGA...CAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCTGTTGTCATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGGGAGTGTTCATTGGTaGCACTGTGCTCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: ENGSSLQIQRQTQRTKFKGSVHW*HCAPLV
Trigger: GACCAATGGAGCACAGTGGCACCAATGAACACTCCC...CTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp ATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACGGGAGTGGTAAGAGCTaGCACATAGTCCCACTTGTT +
Preference number: 4 (lower is better)
Translates to: MDPRSKSNDKPKERSSRNGSGKS*HIVPLV
Trigger: AACAAGTGGGACTATGTGGCAGCTCTTACCACTCCC...GTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTCAACTGCAAAGATTTTaGCCATCACTGTTGCGATCC +
Preference number: 4 (lower is better)
Translates to: APLFAEAGKSSPGFMTTAQLQRF*PSLLRS
Trigger: GGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTG...AGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATTGTGACCGCCAACTaGAAAGATTTTGCCCATCAC +
Preference number: 4 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLEIVTAN*KDFAHH
Trigger: GTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAAT...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp CCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAACAGTCGCTGGCGGCTGTTCATTTCTaGTCCAAAGAACCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: PSVHRRVFTTADIQKQSLAAVHF*SKEPAV
Trigger: AACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGC...CAGCGACTGTTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp TCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTCCCCATGCCAGCACCAGTTTGTaGCAAGATATTAGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: SLQIQRQTQRTKFKEPPHASTSL*QDISFE
Trigger: CTCAAAGCTAATATCTTGTCACAAACTGGTGCTGGC...ATGGGGAGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS-3UTR TCA 90 bp GACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAATGAAAGAAACATGGCTCTaGAGTAGGGGATCACACAAG +
Preference number: 4 (lower is better)
Translates to: DFVRKPVQWCPVVLKLEMKETWL*SRGSHK
Trigger: CTTGTGTGATCCCCTACTTCAGAGCCATGTTTCTTT...CATTTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS-3UTR TCA 90 bp ATGAATTCGTCAGCACCGTGTAGAATGATCCTCAAGGGAGCAGGCCTTAAGTTCACTTCAGATTCTGCTTaGCGATCTGTTCTTTCGCCA +
Preference number: 4 (lower is better)
Translates to: MNSSAPCRMILKGAGLKFTSDSA*RSVLSP
Trigger: TGGCGAAAGAACAGATCGTCAAGCAGAATCTGAAGT...GAACTTAAGGCCTGCTCCCTTGAGGATCATTCTACACGGTGCTGACGAATTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAACTTGGTGTTCATCGATaGCTTCATCATCCACTTGTT +
Preference number: 4 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLELGVHR*LHHPLV
Trigger: AACAAGTGGATGATGAAGGCATCGATGAACACCAAG...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp GTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTGCGGCTGTTCATTTCTaGTCCAAAGAACCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: VDEWTSLSSGKNLLPEVSAAVHF*SKEPAV
Trigger: AACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGC...ACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CCA 90 bp AGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAAGCGGCTGTTCATTTCTaGTCCAAAGAACCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: SSHPSVHRRVFTTADIQKAAVHF*SKEPAV
Trigger: AACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGC...TTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
3UTR CAA 72 bp CTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTaGCTGGGACTTCATCACATACAGTCAACCACATTA +
Preference number: 4 (lower is better)
Translates to: LSSCPSDGIVSL*LGLHHIQSTTL
Trigger: TAATGTGGTTGACTGTATGTGATGAAGTCCCAGCAACAAGGACACAATCCCGTCTGATGGACAGGAAGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp AAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCACTTCAGTAAAGTaGTCACAGGCATACTGGTCC +
Preference number: 4 (lower is better)
Translates to: KWILAPNPTTNPKNEVQGTTSVK*SQAYWS
Trigger: GGACCAGTATGCCTGTGAGCACTTTACTGAAGTGGT...TCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp GGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGAACCTCTTGGTGTTCATCGATaGCTTCATCATCCACTTGTT +
Preference number: 4 (lower is better)
Translates to: GSSLQIQRQTQRTKFKEPLGVHR*LHHPLV
Trigger: AACAAGTGGATGATGAAGGCATCGATGAACACCAAG...AGGTTCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCTCATTGGTGCCACTGTaGTCCATTGGTCAGATTCGA +
Preference number: 4 (lower is better)
Translates to: RENGSSLQIQRQTQRTKFSLVPL*SIGQIR
Trigger: TCGAATCTGACCAATGGAGCACAGTGGCACCAATGA...GAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CATGTTGATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTCAACTGCAAAGATTTTaGCCATCACTGTTGCGATCC +
Preference number: 4 (lower is better)
Translates to: HVDEWTSLSSGKNLLPEVQLQRF*PSLLRS
Trigger: GGATCGCAACAGTGATGGGCAAAATCTTTGCAGTTG...AACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATCAACATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
3UTR CAA 72 bp TCGATGTCGTATCTCTCCACGTCACTGAAGCACGTATaGTCATCTAATCCTCCAATTGCATATATTGGGCCC +
Preference number: 4 (lower is better)
Translates to: SMSYLSTSLKHV*SSNPPIAYIGP
Trigger: GGGCCCAATATATGCAATTGGAGGATTAGATGACAATACGTGCTTCAGTGACGTGGAGAGATACGACATCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131843.2
CDS-3UTR GCA 90 bp GCTATTTTAAGGTTTGGCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCCATAGTCCCACTTGTTaGTTCGAGGGTCGTACCGTT +
Preference number: 4 (lower is better)
Translates to: AILRFGTTSNISQSKNGFHSPTC*FEGRTV
Trigger: AACGGTACGACCCTCGAAGCAACAAGTGGGACTATG...GAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGCCAAACCTTAAAATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp CGAAATGGAAGCGAAGGCCTTCTTACAGACACTAATATGGTTTCAAGAATGTTTCATAGTCCCACTTGTTaGTTCGAGGGTCGTACCGTT +
Preference number: 4 (lower is better)
Translates to: RNGSEGLLTDTNMVSRMFHSPTC*FEGRTV
Trigger: AACGGTACGACCCTCGAAGCAACAAGTGGGACTATG...AAACATTCTTGAAACCATATTAGTGTCTGTAAGAAGGCCTTCGCTTCCATTTCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAATTGTGACCGCCAACTaGAAAGATTTTGCCCATCAC +
Preference number: 4 (lower is better)
Translates to: RKWILAPNPTTNPKNEVQIVTAN*KDFAHH
Trigger: GTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAAT...TTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR GCA 90 bp AGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAACTTGGTGTTCATCGATaGCTTCATCATCCACTTGTT +
Preference number: 4 (lower is better)
Translates to: RKWILAPNPTTNPKNEVQLGVHR*LHHPLV
Trigger: AACAAGTGGATGATGAAGGCATCGATGAACACCAAG...TTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR TCA 90 bp TTTAAGGTTTGGCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCAAGATATCTCTCCACGTCACTaGAGCACGTATTGTCATCTA +
Preference number: 4 (lower is better)
Translates to: FKVWHYIKHLSEQEWVQDISPRH*STYCHL
Trigger: TAGATGACAATACGTGCTTCAGTGACGTGGAGAGAT...ATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGCCAAACCTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp TCCCTCCCTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCCGACCAGCTCCCACTaGTTCAGCACGGGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: SLPRWTWASHTLCLFTGRPTSSH*FSTGSN
Trigger: GTTTGACCCCGTGCTGAACAAGTGGGAGCTGGTCGG...CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp CTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACACGATCCTTCCAGGCCTCGTaGGCTTCGAAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: LGGHGRHTPSVFSLGGTRSFQAS*ASKMKE
Trigger: CTCCTTCATCTTCGAAGCCAACGAGGCCTGGAAGGA...TCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp GCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTCCGACCAGCTCCCACTaGTTCAGCACGGGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: AAVTVKRPAVFLSIRRDCPTSSH*FSTGSN
Trigger: GTTTGACCCCGTGCTGAACAAGTGGGAGCTGGTCGG...ACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS TCA 90 bp GCATGTATTCACAACAAGCTCTGGCCACCAGCTCAACCTTCAGGGTaGCGTCGCAGAGCTCCCCGTTTTCATAGAAGCCCAGGAGAGAGC +
Preference number: 5 (lower is better)
Translates to: ACIHNKLWPPAQPSG*RRRAPRFHRSPGES
Trigger: GCTCTCTCCTGGGCTTCTATGAAAACGGGGAGCTCTGCGACGTCACCCTGAAGGTTGAGCTGGTGGCCAGAGCTTGTTGTGAATACATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp TCCCTCCCTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCACGTGACTCCTAGCTaGTTTCCCATTGGTAGATTC +
Preference number: 5 (lower is better)
Translates to: SLPRWTWASHTLCLFTGRHVTPS*FPIGRF
Trigger: GAATCTACCAATGGGAAACAAGCTAGGAGTCACGTG...CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp TCCCTCCCTAGGTGGACATGGGCGTCACACACCCTCTGTCTTTTCACTGGGCGGCCATTTAGGATGATGTaGCGGATTGGCAAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: SLPRWTWASHTLCLFTGRPFRMM*RIGKKP
Trigger: TGGCTTCTTGCCAATCCGCAACATCATCCTAAATGG...CCGCCCAGTGAAAAGACAGAGGGTGTGTGACGCCCATGTCCACCTAGGGAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CCA 90 bp TGCTTCTCACTGTCAATGTTGAGGTCGCTAGAGGAGAGGAGCTTGTaGAGATGTTGCGGGGACACACTCACGAAGTCTTCGCACTCCACC +
Preference number: 5 (lower is better)
Translates to: CFSLSMLRSLEERSL*RCCGDTLTKSSHST
Trigger: GGTGGAGTGCGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAACATTGACAGTGAGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTTCCTTCCAGGCCTCGTaGGCTTCGAAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: AAVTVKRPAVFLSIRRDCSFQAS*ASKMKE
Trigger: CTCCTTCATCTTCGAAGCCAACGAGGCCTGGAAGGA...ACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp CTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTCCAGGCCTCGTaGGCTTCGAAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: LQSQSKGLLSSCPSDGIVSFQAS*ASKMKE
Trigger: CTCCTTCATCTTCGAAGCCAACGAGGCCTGGAAGGA...CACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp TCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTTTGCCCATCACTGTaGCGATCCCTACGCCACCCC +
Preference number: 5 (lower is better)
Translates to: SQSKGLLSSCPSDGIVSLFCPSL*RSLRHP
Trigger: GGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAA...CAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS GCA 90 bp GGGGACACACTCACGAAGTCTTCGCACTCCACCACTTCAGTAAAGTaGTCACAGGCATACTGGTCCGCCATGTCCATTAGGTCTATTCGG +
Preference number: 5 (lower is better)
Translates to: GDTLTKSSHSTTSVK*SQAYWSAMSIRSIR
Trigger: CCGAATAGACCTAATGGACATGGCGGACCAGTATGCCTGTGAGCACTTTACTGAAGTGGTGGAGTGCGAAGACTTCGTGAGTGTGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CCA 90 bp GTGCTTCCTCGGGGTCGTCCTGACTGTGTACTCAAAGTCCGGGACTaGTTTACTGCTCAAGTGAAGGTGGTAATTTCTCGCTTCGTCCAG +
Preference number: 5 (lower is better)
Translates to: VLPRGRPDCVLKVRD*FTAQVKVVISRFVQ
Trigger: CTGGACGAAGCGAGAAATTACCACCTTCACTTGAGCAGTAAACCAGTCCCGGACTTTGAGTACACAGTCAGGACGACCCCGAGGAAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS CCA 90 bp CTTGACGATCTGTTCTTTCGCCACAACACCCATGAGAAAATCAACTaGCAGCAATGGCAGACGGACCTTCAGGGTGACGTCGCAGAGCTC +
Preference number: 5 (lower is better)
Translates to: LDDLFFRHNTHEKIN*QQWQTDLQGDVAEL
Trigger: GAGCTCTGCGACGTCACCCTGAAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCGAAAGAACAGATCGTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112811.8
CDS-3UTR CAA 90 bp CACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGTTCCTTCCAGGCCTCGTaGGCTTCGAAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: HSQKACCLPVHQTGLCPCSFQAS*ASKMKE
Trigger: CTCCTTCATCTTCGAAGCCAACGAGGCCTGGAAGGA...ACAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp ACACACCCTCTGTCTTTTCACTGGGCGGCACACGAACGCGGATCTCATTCACCGCACTTCAGATTCTGCTaGACGATCTGTTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: THPLSFHWAAHERGSHSPHFRFC*TICSFA
Trigger: GGCGAAAGAACAGATCGTCAAGCAGAATCTGAAGTG...CGGTGAATGAGATCCGCGTTCGTGTGCCGCCCAGTGAAAAGACAGAGGGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS TCA 90 bp GCACCAGTTTGTGACAAGATATTAGCTTTGAGCCAACCTTCAGGGTaGCGTCGCAGAGCTCCCCGTTTTCATAGAAGCCCAGGAGAGAGC +
Preference number: 5 (lower is better)
Translates to: APVCDKILALSQPSG*RRRAPRFHRSPGES
Trigger: GCTCTCTCCTGGGCTTCTATGAAAACGGGGAGCTCTGCGACGTCACCCTGAAGGTTGGCTCAAAGCTAATATCTTGTCACAAACTGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS GCA 90 bp TGTAGCTGCATGTATTCACAACAAGCTCTGGCCACCAGCTCAACCTaGAGAATACACGCTGCATACAGCAGGGGCTGGACATTGTCCACT +
Preference number: 5 (lower is better)
Translates to: CSCMYSQQALATSST*RIHAAYSRGWTLST
Trigger: AGTGGACAATGTCCAGCCCCTGCTGTATGCAGCGTGTATTCTGCAGGTTGAGCTGGTGGCCAGAGCTTGTTGTGAATACATGCAGCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS CCA 90 bp CTTGACGATCTGTTCTTTCGCCACAACACCCATGAGAAAATCAACTaGCAGCAATGGCAGACGGACCTGTGCAAGTGTCTCGTCCAGCCA +
Preference number: 5 (lower is better)
Translates to: LDDLFFRHNTHEKIN*QQWQTDLCKCLVQP
Trigger: TGGCTGGACGAGACACTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCGAAAGAACAGATCGTCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp AGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAAGGACCTGCTCCTCACTaGCTGCTGCTGTTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SSHPSVHRRVFTTADIQKGPAPH*LLLLLL
Trigger: CAGCAGCAACAGCAGCAGCAAGTGAGGAGCAGGTCC...TTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp GCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCAAGATGGGCTGCTTCCCTAGAGGAGAGGAGCTaGTGGAGATGTTGCGGGGAC +
Preference number: 5 (lower is better)
Translates to: ALHQTSLRARMGSRWAASLEERS*WRCCGD
Trigger: GTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAG...GGAAGCAGCCCATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp CCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAACAGTCGCTGCTAGAGGAGAGGAGCTaGTGGAGATGTTGCGGGGAC +
Preference number: 5 (lower is better)
Translates to: PSVHRRVFTTADIQKQSLLEERS*WRCCGD
Trigger: GTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAG...CAGCGACTGTTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTCACGGGGAGTGTTCATaGGTGCCACTGTGCTCCATT +
Preference number: 5 (lower is better)
Translates to: APLFAEAGKSSPGFMTTAHGECS*VPLCSI
Trigger: AATGGAGCACAGTGGCACCAATGAACACTCCCCGTG...AGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCAAGATGGGCTGCTTCCTTTTGCCCATCACTGTaGCGATCCCTACGCCACCCC +
Preference number: 5 (lower is better)
Translates to: ALHQTSLRARMGSRWAASFCPSL*RSLRHP
Trigger: GGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAA...GGAAGCAGCCCATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS TCA 90 bp TACACGCTGCATACAGCAGGGGCTGGACATTGTCCACTGTTAAAGTaGGCCGTGAGGAGTAGACAAACTTCACCAAGTCTTCCACGGCAT +
Preference number: 5 (lower is better)
Translates to: YTLHTAGAGHCPLLK*AVRSRQTSPSLPRH
Trigger: ATGCCGTGGAAGACTTGGTGAAGTTTGTCTACTCCTCACGGCTCACTTTAACAGTGGACAATGTCCAGCCCCTGCTGTATGCAGCGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS GCA 90 bp AACACCCATGAGAAAATCAACTGGCAGCAATGGCAGACGGACCTGTaGAAGTGTCTCGTCCAGCCATTTAGGATGATGTTGCGGATTGGC +
Preference number: 5 (lower is better)
Translates to: NTHEKINWQQWQTDL*KCLVQPFRMMLRIG
Trigger: GCCAATCCGCAACATCATCCTAAATGGCTGGACGAGACACTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTCATGGGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CCA 90 bp CTATTCGGTTGTGACTCTCTGCGAAGGCTCGTACAGCCAGGCAGTTaGAGGGATGAAAGTGTAGCTGCATGTATTCACAACAAGCTCTGG +
Preference number: 5 (lower is better)
Translates to: LFGCDSLRRLVQPGS*RDESVAACIHNKLW
Trigger: CCAGAGCTTGTTGTGAATACATGCAGCTACACTTTCATCCCTCCAACTGCCTGGCTGTACGAGCCTTCGCAGAGAGTCACAACCGAATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp AGCAAGAATGGGTTCAAGATGGGCTGCTTCCAGCCCGCTCCACTGTTTGCTGAAGCCTTCATCATCCACTaGTTAGTGAGAGGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: SKNGFKMGCFQPAPLFAEAFIIH*LVRGSN
Trigger: GTTTGACCCTCTCACTAACAAGTGGATGATGAAGGC...TTCAGCAAACAGTGGAGCGGGCTGGAAGCAGCCCATCTTGAACCCATTCTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp TGGCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCAAGATGGGCTGCTTTTTTGCCCATCACTGTaGCGATCCCTACGCCACCCC +
Preference number: 5 (lower is better)
Translates to: WHYIKHLSEQEWVQDGLLFCPSL*RSLRHP
Trigger: GGGGTGGCGTAGGGATCGCAACAGTGATGGGCAAAA...AAGCAGCCCATCTTGAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGCCA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTCCAACTGCAAAGATTTaGCCCATCACTGTTGCGATC +
Preference number: 5 (lower is better)
Translates to: AAVTVKRPAVFLSIRRDCPTAKI*PITVAI
Trigger: GATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGG...ACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp TCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCAGACGGGATTGTGTCCTTGCCATTTAGGATGATGTaGCGGATTGGCAAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: SQSKGLLSSCPSDGIVSLPFRMM*RIGKKP
Trigger: TGGCTTCTTGCCAATCCGCAACATCATCCTAAATGG...CAAGGACACAATCCCGTCTGATGGACAGGAAGACAGCAGGCCTTTTGACTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp TTTATGACAACAGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGCTCCAATTGCATATATaGGGCCCCCTAAGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: FMTTALTRQSTDVYSQQLLQLHI*GPLRRP
Trigger: TGGCCTCCTTAGGGGGCCCAATATATGCAATTGGAG...CAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCTGTTGTCATAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTTTCCACGGGGAGTGTTCATaGGTGCCACTGTGCTCCATT +
Preference number: 5 (lower is better)
Translates to: DEWTSLSSGKNLLPEVSFHGECS*VPLCSI
Trigger: AATGGAGCACAGTGGCACCAATGAACACTCCCCGTG...GAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp ACAGTCATCCCAAGAAATTCTCCCGGGTGGGAAAAGAATAGCAGCCACCAGACTCACGTGACTCCTAGCTaGTTTCCCATTGGTAGATTC +
Preference number: 5 (lower is better)
Translates to: TVIPRNSPGWEKNSSHQTHVTPS*FPIGRF
Trigger: GAATCTACCAATGGGAAACAAGCTAGGAGTCACGTG...AGTCTGGTGGCTGCTATTCTTTTCCCACCCGGGAGAATTTCTTGGGATGACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp GCTCCACTGTTTGCTGAAGCAGGAAAGAGCTCACCTGGCTTTATGACAACAGCTCACGTGACTCCTAGCTaGTTTCCCATTGGTAGATTC +
Preference number: 5 (lower is better)
Translates to: APLFAEAGKSSPGFMTTAHVTPS*FPIGRF
Trigger: GAATCTACCAATGGGAAACAAGCTAGGAGTCACGTG...AGCTGTTGTCATAAAGCCAGGTGAGCTCTTTCCTGCTTCAGCAAACAGTGGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp CCAGACTTCGTGAGGAAGCCAGTACAGTGGTGTCCTGTAGTTCTGAAACTCGAAGCCTTCATCATCCACTaGTTAGTGAGAGGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: PDFVRKPVQWCPVVLKLEAFIIH*LVRGSN
Trigger: GTTTGACCCTCTCACTAACAAGTGGATGATGAAGGC...TTCGAGTTTCAGAACTACAGGACACCACTGTACTGGCTTCCTCACGAAGTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp AAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGGACACGGGGAGTGTTCATaGGTGCCACTGTGCTCCATT +
Preference number: 5 (lower is better)
Translates to: KWILAPNPTTNPKNEVQGHGECS*VPLCSI
Trigger: AATGGAGCACAGTGGCACCAATGAACACTCCCCGTG...TCCTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCAAGCTCCAATTGCATATATaGGGCCCCCTAAGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: ENGSSLQIQRQTQRTKFKLQLHI*GPLRRP
Trigger: TGGCCTCCTTAGGGGGCCCAATATATGCAATTGGAG...CTTGAACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp TTCAAAAACAGTCGCTGCAGTCACAGTCAAAAGGCCTGCTGTCTTCCTGTCCATCCAACTGCAAAGATTTaGCCCATCACTGTTGCGATC +
Preference number: 5 (lower is better)
Translates to: FKNSRCSHSQKACCLPVHPTAKI*PITVAI
Trigger: GATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGG...ATGGACAGGAAGACAGCAGGCCTTTTGACTGTGACTGCAGCGACTGTTTTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp CGAAATGGAAGCGAAGGCCTTCTTACAGACACTAATATGGTTTCAAGAATGTTTCCGACCAGCTCCCACTaGTTCAGCACGGGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: RNGSEGLLTDTNMVSRMFPTSSH*FSTGSN
Trigger: GTTTGACCCCGTGCTGAACAAGTGGGAGCTGGTCGG...AAACATTCTTGAAACCATATTAGTGTCTGTAAGAAGGCCTTCGCTTCCATTTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS TCA 90 bp TTAACGCCTGCTTGGCTTCAGACATTTCGGAAAGAAACATGGCTCTaGAGTAGGGGATCACACAAGCCAGCACCAGTTTGTGACAAGATA +
Preference number: 5 (lower is better)
Translates to: LTPAWLQTFRKETWL*SRGSHKPAPVCDKI
Trigger: TATCTTGTCACAAACTGGTGCTGGCTTGTGTGATCCCCTACTTCAGAGCCATGTTTCTTTCCGAAATGTCTGAAGCCAAGCAGGCGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS-3UTR CAA 90 bp AGCTCTCACCCGTCAGTCCACAGACGTGTATTCACAACAGCTGACATTCAAAAACACGTGACTCCTAGCTaGTTTCCCATTGGTAGATTC +
Preference number: 5 (lower is better)
Translates to: SSHPSVHRRVFTTADIQKHVTPS*FPIGRF
Trigger: GAATCTACCAATGGGAAACAAGCTAGGAGTCACGTG...TTTTTGAATGTCAGCTGTTGTGAATACACGTCTGTGGACTGACGGGTGAGAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
ENSMUST00000131843.2
CDS-3UTR CAA 90 bp GATGAGTGGACATCTCTCTCCTCTGGGAAAAACCTACTGCCTGAAGTTAGTTTCCACTTCAGATTCTGCTaGACGATCTGTTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: DEWTSLSSGKNLLPEVSFHFRFC*TICSFA
Trigger: GGCGAAAGAACAGATCGTCAAGCAGAATCTGAAGTG...GAAACTAACTTCAGGCAGTAGGTTTTTCCCAGAGGAGAGAGATGTCCACTCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GCTATTTTAAGGTTTGGCACTACATCAAACATCTCTCAGAGCAAGAATGGGTTCCTCCAATTGCATATATaGGGCCCCCTAAGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: AILRFGTTSNISQSKNGFLQLHI*GPLRRP
Trigger: TGGCCTCCTTAGGGGGCCCAATATATGCAATTGGAG...GAACCCATTCTTGCTCTGAGAGATGTTTGATGTAGTGCCAAACCTTAAAATAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS CCA 90 bp TTCCACAGAGATCACACCCACATGTCGCCTGCGGCTGTTCATTTCTaGTCCAAAGAACCAGCTGTTTTTGTTGATAGAATAGCATTCAAT +
Preference number: 5 (lower is better)
Translates to: FHRDHTHMSPAAVHF*SKEPAVFVDRIAFN
Trigger: ATTGAATGCTATTCTATCAACAAAAACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGCAGGCGACATGTGGGTGTGATCTCTGTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp AAGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTGCCTTCATCATCCACTaGTTAGTGAGAGGGTCAAAC +
Preference number: 5 (lower is better)
Translates to: KRKWILAPNPTTNPKNEVAFIIH*LVRGSN
Trigger: GTTTGACCCTCTCACTAACAAGTGGATGATGAAGGC...AACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp AAGAGAAAATGGATCCTCGCTCCAAATCCAACGACAAACCCAAAGAACGAAGTTCCAACTGCAAAGATTTaGCCCATCACTGTTGCGATC +
Preference number: 5 (lower is better)
Translates to: KRKWILAPNPTTNPKNEVPTAKI*PITVAI
Trigger: GATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGG...AACTTCGTTCTTTGGGTTTGTCGTTGGATTTGGAGCGAGGATCCATTTTCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS-3UTR CAA 90 bp GAAACACATAAACATTTTCCCTACTTCATAAACACCCAAGAACTGAAAGTCACCCACTTCAGATTCTGCTaGACGATCTGTTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: ETHKHFPYFINTQELKVTHFRFC*TICSFA
Trigger: GGCGAAAGAACAGATCGTCAAGCAGAATCTGAAGTG...GGTGACTTTCAGTTCTTGGGTGTTTATGAAGTAGGGAAAATGTTTATGTGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS TCA 72 bp CACAACAAGCTCTGGCCACCAGCTCAACCTTCAGGGTaGCGTCGCAGAGCTCCCCGTTTTCATAGAAGCCCA +
Preference number: 6 (lower is better)
Translates to: HNKLWPPAQPSG*RRRAPRFHRSP
Trigger: TGGGCTTCTATGAAAACGGGGAGCTCTGCGACGTCACCCTGAAGGTTGAGCTGGTGGCCAGAGCTTGTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112815.8
CDS GCA 72 bp TTGAGGTCGCTAGAGGAGAGGAGCTTGTGGAGATGTTaGGGGGACACACTCACGAAGTCTTCGCACTCCACC +
Preference number: 6 (lower is better)
Translates to: LRSLEERSLWRC*GDTLTKSSHST
Trigger: GGTGGAGTGCGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CCA 72 bp CGCCACAACACCCATGAGAAAATCAACTGGCAGCAATaGCAGACGGACCTTCAGGGTGACGTCGCAGAGCTC +
Preference number: 6 (lower is better)
Translates to: RHNTHEKINWQQ*QTDLQGDVAEL
Trigger: GAGCTCTGCGACGTCACCCTGAAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112811.8
CDS CAA 72 bp GTTGAGGTCGCTAGAGGAGAGGAGCTTGTGGAGATGTaGCGGGGACACACTCACGAAGTCTTCGCACTCCAC +
Preference number: 6 (lower is better)
Translates to: VEVARGEELVEM*RGHTHEVFALH
Trigger: GTGGAGTGCGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CCA 72 bp CGCCACAACACCCATGAGAAAATCAACTGGCAGCAATaGCAGACGGACCTGTGCAAGTGTCTCGTCCAGCCA +
Preference number: 6 (lower is better)
Translates to: RHNTHEKINWQQ*QTDLCKCLVQP
Trigger: TGGCTGGACGAGACACTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CAA 90 bp ACCTGCTTCTCACTGTCAATGTTGAGGTCGCTAGAGGAGAGGAGCTaGTGGAGATGTTGCGGGGACACACTCACGAAGTCTTCGCACTCC +
Preference number: 6 (lower is better)
Translates to: TCFSLSMLRSLEERS*WRCCGDTLTKSSHS
Trigger: GGAGTGCGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAACATTGACAGTGAGAAGCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS TCA 72 bp TACTGGTCCGCCATGTCCATTAGGTCTATTCGGTTGTaGCTCTCTGCGAAGGCTCGTACAGCCAGGCAGTTG +
Preference number: 6 (lower is better)
Translates to: YWSAMSIRSIRL*LSAKARTARQL
Trigger: CAACTGCCTGGCTGTACGAGCCTTCGCAGAGAGTCACAACCGAATAGACCTAATGGACATGGCGGACCAGTA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS GCA 72 bp CCTTCCCTTCCACAGAGATCACACCCACATGTCGCCTaGGGCTGTTCATTTCTGGTCCAAAGAACCAGCTGT +
Preference number: 6 (lower is better)
Translates to: PSLPQRSHPHVA*GCSFLVQRTSC
Trigger: ACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGCAGGCGACATGTGGGTGTGATCTCTGTGGAAGGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS CCA 72 bp CTGTCAATGTTGAGGTCGCTAGAGGAGAGGAGCTTGTaGAGATGTTGCGGGGACACACTCACGAAGTCTTCG +
Preference number: 6 (lower is better)
Translates to: LSMLRSLEERSL*RCCGDTLTKSS
Trigger: CGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAACATTGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CAA 90 bp ACTGTCAATGTTGAGGTCGCTAGAGGAGAGGAGCTTGTGGAGATGTaGCGGGGACACACTCACGAAGTCTTCGCACTCCACCACTTCAGT +
Preference number: 6 (lower is better)
Translates to: TVNVEVARGEELVEM*RGHTHEVFALHHFS
Trigger: ACTGAAGTGGTGGAGTGCGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAACATTGACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CAA 90 bp CAGACGGACCTGTGCAAGTGTCTCGTCCAGCCATTTAGGATGATGTaGCGGATTGGCAAGAAGCCACTTGATGGCAGCACTGTAGACCTG +
Preference number: 6 (lower is better)
Translates to: QTDLCKCLVQPFRMM*RIGKKPLDGSTVDL
Trigger: CAGGTCTACAGTGCTGCCATCAAGTGGCTTCTTGCCAATCCGCAACATCATCCTAAATGGCTGGACGAGACACTTGCACAGGTCCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS TCA 72 bp CGGACCTGTGCAAGTGTCTCGTCCAGCCATTTAGGATaGTGTTGCGGATTGGCAAGAAGCCACTTGATGGCA +
Preference number: 6 (lower is better)
Translates to: RTCASVSSSHLG*CCGLARSHLMA
Trigger: TGCCATCAAGTGGCTTCTTGCCAATCCGCAACATCATCCTAAATGGCTGGACGAGACACTTGCACAGGTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS GCA 72 bp ATGTATTCACAACAAGCTCTGGCCACCAGCTCAACCTaGAGAATACACGCTGCATACAGCAGGGGCTGGACA +
Preference number: 6 (lower is better)
Translates to: MYSQQALATSST*RIHAAYSRGWT
Trigger: TGTCCAGCCCCTGCTGTATGCAGCGTGTATTCTGCAGGTTGAGCTGGTGGCCAGAGCTTGTTGTGAATACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS GCA 72 bp CTCACGAAGTCTTCGCACTCCACCACTTCAGTAAAGTaGTCACAGGCATACTGGTCCGCCATGTCCATTAGG +
Preference number: 6 (lower is better)
Translates to: LTKSSHSTTSVK*SQAYWSAMSIR
Trigger: CCTAATGGACATGGCGGACCAGTATGCCTGTGAGCACTTTACTGAAGTGGTGGAGTGCGAAGACTTCGTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS CCA 72 bp CGGGGTCGTCCTGACTGTGTACTCAAAGTCCGGGACTaGTTTACTGCTCAAGTGAAGGTGGTAATTTCTCGC +
Preference number: 6 (lower is better)
Translates to: RGRPDCVLKVRD*FTAQVKVVISR
Trigger: GCGAGAAATTACCACCTTCACTTGAGCAGTAAACCAGTCCCGGACTTTGAGTACACAGTCAGGACGACCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8
CDS CAA 72 bp CTGTGCAAGTGTCTCGTCCAGCCATTTAGGATGATGTaGCGGATTGGCAAGAAGCCACTTGATGGCAGCACT +
Preference number: 6 (lower is better)
Translates to: LCKCLVQPFRMM*RIGKKPLDGST
Trigger: AGTGCTGCCATCAAGTGGCTTCTTGCCAATCCGCAACATCATCCTAAATGGCTGGACGAGACACTTGCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS TCA 72 bp TGTGACAAGATATTAGCTTTGAGCCAACCTTCAGGGTaGCGTCGCAGAGCTCCCCGTTTTCATAGAAGCCCA +
Preference number: 6 (lower is better)
Translates to: CDKILALSQPSG*RRRAPRFHRSP
Trigger: TGGGCTTCTATGAAAACGGGGAGCTCTGCGACGTCACCCTGAAGGTTGGCTCAAAGCTAATATCTTGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS GCA 72 bp GAGAAAATCAACTGGCAGCAATGGCAGACGGACCTGTaGAAGTGTCTCGTCCAGCCATTTAGGATGATGTTG +
Preference number: 6 (lower is better)
Translates to: EKINWQQWQTDL*KCLVQPFRMML
Trigger: CAACATCATCCTAAATGGCTGGACGAGACACTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031254.9
ENSMUST00000112815.8
CDS TCA 72 bp CATACAGCAGGGGCTGGACATTGTCCACTGTTAAAGTaGGCCGTGAGGAGTAGACAAACTTCACCAAGTCTT +
Preference number: 6 (lower is better)
Translates to: HTAGAGHCPLLK*AVRSRQTSPSL
Trigger: AAGACTTGGTGAAGTTTGTCTACTCCTCACGGCTCACTTTAACAGTGGACAATGTCCAGCCCCTGCTGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS GCA 72 bp GCATCACCGTCAAAGTCTCGGATCTCGATTAACGCCTaGTTGGCTTCAGACATTTCGGAAAGAAACATGGCT +
Preference number: 6 (lower is better)
Translates to: ASPSKSRISINA*LASDISERNMA
Trigger: AGCCATGTTTCTTTCCGAAATGTCTGAAGCCAAGCAGGCGTTAATCGAGATCCGAGACTTTGACGGTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS CCA 72 bp GATGAAAGTGTAGCTGCATGTATTCACAACAAGCTCTaGCCACCAGCTCAACCTGCAGAATACACGCTGCAT +
Preference number: 6 (lower is better)
Translates to: DESVAACIHNKL*PPAQPAEYTLH
Trigger: ATGCAGCGTGTATTCTGCAGGTTGAGCTGGTGGCCAGAGCTTGTTGTGAATACATGCAGCTACACTTTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS CAA 72 bp TCACCGTCAAAGTCTCGGATCTCGATTAACGCCTGCTaGGCTTCAGACATTTCGGAAAGAAACATGGCTCTG +
Preference number: 6 (lower is better)
Translates to: SPSKSRISINAC*ASDISERNMAL
Trigger: CAGAGCCATGTTTCTTTCCGAAATGTCTGAAGCCAAGCAGGCGTTAATCGAGATCCGAGACTTTGACGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031254.9
CDS CCA 72 bp GATCACACCCACATGTCGCCTGCGGCTGTTCATTTCTaGTCCAAAGAACCAGCTGTTTTTGTTGATAGAATA +
Preference number: 6 (lower is better)
Translates to: DHTHMSPAAVHF*SKEPAVFVDRI
Trigger: TATTCTATCAACAAAAACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGCAGGCGACATGTGGGTGTGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031254.9
ENSMUST00000112811.8
ENSMUST00000112815.8