RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLHL31 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044938

Ensembl transcript IDs: ENSMUST00000057781.8

Found 196 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATGTAGCCATCCCTCAGTGTCCTTGGGAGACTGGAACCAGGACATaGCCCATCCCCTGCTGGGATACAGTGTCTGTGACACTCACGTCC +
Preference number: 1 (lower is better)
Translates to: DVAIPQCPWETGTRT*PIPCWDTVSVTLTS
Trigger: GGACGTGAGTGTCACAGACACTGTATCCCAGCAGGGGATGGGGCATGTCCTGGTTCCAGTCTCCCAAGGACACTGAGGGATGGCTACATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 90 bp GTTGGCCTGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTaGCTTCCTGGAGACGCTCTTATCGGGTCTCTGGTCCATTCAGAA +
Preference number: 1 (lower is better)
Translates to: VGLGAQRRWTYSIKI*LPGDALIGSLVHSE
Trigger: TTCTGAATGGACCAGAGACCCGATAAGAGCGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCAGGCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 90 bp CTATCAGCACTCCTCAGTGAGGAACCCATCTATTCATCTGGTAATTaGCAAGTCCGAGAACCCCAAATATTTCCTTCATCATCTCCACGT +
Preference number: 1 (lower is better)
Translates to: LSALLSEEPIYSSGN*QVREPQIFPSSSPR
Trigger: ACGTGGAGATGATGAAGGAAATATTTGGGGTTCTCGGACTTGGCAATTACCAGATGAATAGATGGGTTCCTCACTGAGGAGTGCTGATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 90 bp AAATTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTaGCCTAGCAAGTCGTGGCCAAATGATCCCCAAAATATTTGCTCA +
Preference number: 1 (lower is better)
Translates to: KLQRCVYTALIRCDG*PSKSWPNDPQNICS
Trigger: TGAGCAAATATTTTGGGGATCATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 90 bp AGTTTGCAGTTGCAAAGCGGACTCTGCTTCCCAGGAGCAGCAACTTaGAAATGGATTAAAGACTTTGAAGGGTACAGAACGTATTGCATC +
Preference number: 1 (lower is better)
Translates to: SLQLQSGLCFPGAAT*KWIKDFEGYRTYCI
Trigger: GATGCAATACGTTCTGTACCCTTCAAAGTCTTTAATCCATTTCCAAGTTGCTGCTCCTGGGAAGCAGAGTCCGCTTTGCAACTGCAAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 90 bp AGCCTACTGAAATTAACTGGTAAGTTAAGAGTTCACAGGTTGGCCTaGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTGGCTTC +
Preference number: 1 (lower is better)
Translates to: SLLKLTGKLRVHRLA*EPREDGHTLLRSGF
Trigger: GAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCAGGCCAACCTGTGAACTCTTAACTTACCAGTTAATTTCAGTAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 90 bp AATGGATTAAAGACTTTGAAGGGTACAGAACGTATTGCATCTTCTTaGATTTTTGTCCTTAATGGCAGTGCAGGCTATTCTGGGGCTCAA +
Preference number: 1 (lower is better)
Translates to: NGLKTLKGTERIASS*IFVLNGSAGYSGAQ
Trigger: TTGAGCCCCAGAATAGCCTGCACTGCCATTAAGGACAAAAATGCAAGAAGATGCAATACGTTCTGTACCCTTCAAAGTCTTTAATCCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 90 bp ACCTCAGTGCACCAAGACGTGGTAAGCCCAGCTGTGTATATTTTCTaGGTCTTCAGATTAACAACACAGAACATAAGTGATTGCAATTTA +
Preference number: 1 (lower is better)
Translates to: TSVHQDVVSPAVYIF*VFRLTTQNISDCNL
Trigger: TAAATTGCAATCACTTATGTTCTGTGTTGTTAATCTGAAGACTCAGAAAATATACACAGCTGGGCTTACCACGTCTTGGTGCACTGAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp TTACCCAGGGGCTGTAATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTGGATCCCTCAGTGTCCTTaGGAGACTGGAACCAGGACA +
Preference number: 2 (lower is better)
Translates to: LPRGCNRAVLCLWKATSWIPQCP*ETGTRT
Trigger: TGTCCTGGTTCCAGTCTCCCAAGGACACTGAGGGAT...CCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATTACAGCCCCTGGGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp TTACCCAGGGGCTGTAATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTGGCAGCCTGCACAGTCATaGAGGCAAAAGAGCAGGTGT +
Preference number: 2 (lower is better)
Translates to: LPRGCNRAVLCLWKATSWQPAQS*RQKSRC
Trigger: ACACCTGCTCTTTTGCCTCCATGACTGTGCAGGCTG...CCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATTACAGCCCCTGGGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp CTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCTGTTGTTCTAGAGAACTATGTTaGAGCACCAGCCACCTACCT +
Preference number: 2 (lower is better)
Translates to: LRWGRGPALSNYRGGVCCSRELC*STSHLP
Trigger: AGGTAGGTGGCTGGTGCTTCAACATAGTTCTCTAGA...ACAACAGACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp TTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGGTGTCCTTGGGAGACTaGAACCAGGACATGCCCCAT +
Preference number: 2 (lower is better)
Translates to: LQRCVYTALIRCDGCPSKVSLGD*NQDMPH
Trigger: ATGGGGCATGTCCTGGTTCCAGTCTCCCAAGGACAC...CTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp CTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCTGTTGTTACTCTATTAAGATCTaGCTTCCTGGAGACGCTCTT +
Preference number: 2 (lower is better)
Translates to: LRWGRGPALSNYRGGVCCYSIKI*LPGDAL
Trigger: AAGAGCGTCTCCAGGAAGCCAGATCTTAATAGAGTA...ACAACAGACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR GCA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGACATGCCCCATCCCCTaGTGGGATACAGTGTCTGTG +
Preference number: 2 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKTCPIP*WDTVSV
Trigger: CACAGACACTGTATCCCAGCAGGGGATGGGGCATGT...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp TTACCCAGGGGCTGTAATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTGGGTTGTACAGAAGGCATaGATGATAGGCATTTCCTTC +
Preference number: 2 (lower is better)
Translates to: LPRGCNRAVLCLWKATSWVVQKA*MIGISF
Trigger: GAAGGAAATGCCTATCATCCATGCCTTCTGTACAAC...CCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATTACAGCCCCTGGGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp CTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCTGTTGTCCAGGAGCAGCAACTTaGAAATGGATTAAAGACTTT +
Preference number: 2 (lower is better)
Translates to: LRWGRGPALSNYRGGVCCPGAAT*KWIKDF
Trigger: AAAGTCTTTAATCCATTTCCAAGTTGCTGCTCCTGG...ACAACAGACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp AGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGAAAGGGATACAGTGTCTGTaGCACTCACGTCCCATCTAC +
Preference number: 2 (lower is better)
Translates to: STSHLPSICDPSLQQEVKGIQCL*HSRPIY
Trigger: GTAGATGGGACGTGAGTGTCACAGACACTGTATCCC...TTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp TGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTGGCTTCCTGGAGACGATTTGTAGCCCCCAATaGAGCACCCTTTTCTCTCTC +
Preference number: 2 (lower is better)
Translates to: WEPREDGHTLLRSGFLETICSPQ*STLFSL
Trigger: GAGAGAGAAAAGGGTGCTTCATTGGGGGCTACAAAT...CGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp TTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGGGTTTTCCCTGCAATTaGTGGAACTCCTCTTTCTCT +
Preference number: 2 (lower is better)
Translates to: LQRCVYTALIRCDGCPSKGFPCN*WNSSFS
Trigger: AGAGAAAGAGGAGTTCCATCAATTGCAGGGAAAACC...CTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR GCA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATAGATACAGTTCCAGATaGCTCTCCATCCCTCCAAAT +
Preference number: 2 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNRYSSR*LSIPPN
Trigger: ATTTGGAGGGATGGAGAGGCATCTGGAACTGTATCT...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR GCA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATTTTTGTTTTCCAGCCTaGACAGTCATGGAGGCAAAA +
Preference number: 2 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNFCFPA*TVMEAK
Trigger: TTTTGCCTCCATGACTGTGCAGGCTGGAAAACAAAA...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR GCA 90 bp TGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTGGCTTCCTGGAGACGCAAGCATGTAAAGTTTaGAGTTGCAAAGCGGACTCT +
Preference number: 2 (lower is better)
Translates to: WEPREDGHTLLRSGFLETQACKV*SCKADS
Trigger: AGAGTCCGCTTTGCAACTGCAAACTTTACATGCTTG...CGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGGTGTATATTTTCCTaGTGGCCCACTCACAGTTTG +
Preference number: 2 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKWCIFS*WPTHSL
Trigger: CAAACTGTGAGTGGGCCACCAGGAAAATATACACCA...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp AGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGAAACCTGAGCATCACTGTTaGATACCCCAAACAGAACTT +
Preference number: 2 (lower is better)
Translates to: STSHLPSICDPSLQQEVKPEHHC*IPQTEL
Trigger: AAGTTCTGTTTGGGGTATTCAACAGTGATGCTCAGG...TTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGCTCTACATTCTCTATTaGGGCACAGCTATTAGTGCA +
Preference number: 2 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKLYILY*GTAISA
Trigger: TGCACTAATAGCTGTGCCTCAATAGAGAATGTAGAG...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATCATAGTGTGATTTGGTaGTTATTCGGGCTAATGTTA +
Preference number: 2 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNHSVIW*LFGLML
Trigger: TAACATTAGCCCGAATAATCACCAAATCACACTATG...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR GCA 90 bp AGCATAGAACCTTTCAGGACTCACTTCCTTATCACCTCAGCTATAACGCTTCCTTGGCCACCCAGTGGCTaGATAATGAAATTGCTTCTT +
Preference number: 2 (lower is better)
Translates to: SIEPFRTHFLITSAITLPWPPSG*IMKLLL
Trigger: AAGAAGCAATTTCATTATGCAGCCACTGGGTGGCCA...AGGAAGCGTTATAGCTGAGGTGATAAGGAAGTGAGTCCTGAAAGGTTCTATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 90 bp CTTCATCATCTCCACGTGAACGAGGGGTCAGTAAAATTACTGCTATaGGCTGTACAGCCAAAGGCTAAGCTGCAGTTAATGATATTCATC +
Preference number: 2 (lower is better)
Translates to: LHHLHVNEGSVKLLL*AVQPKAKLQLMIFI
Trigger: GATGAATATCATTAACTGCAGCTTAGCCTTTGGCTGTACAGCCAATAGCAGTAATTTTACTGACCCCTCGTTCACGTGGAGATGATGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 90 bp GAACTCAGCCTACTGAAATTAACTGGTAAGTTAAGAGTTCACAGGTaGGCCTGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCT +
Preference number: 2 (lower is better)
Translates to: ELSLLKLTGKLRVHR*AWEPREDGHTLLRS
Trigger: AGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCAGGCCAACCTGTGAACTCTTAACTTACCAGTTAATTTCAGTAGGCTGAGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp CACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTCTGTTCCTCTGTTCCTaGGCATCACTGTTGAATACC +
Preference number: 2 (lower is better)
Translates to: HPFLSQNYPYTVGINCRGLFLCS*ASLLNT
Trigger: GGTATTCAACAGTGATGCTCAGGAACAGAGGAACAG...ACCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp TTGTTTTGGCTGCTGGGTAACATGGTATTTTCTGATAAGCTGAGCTGGTACATTCAAGTCGTGGCCAAATaGTCCCCAAAATATTTGCTC +
Preference number: 2 (lower is better)
Translates to: LFWLLGNMVFSDKLSWYIQVVAK*SPKYLL
Trigger: GAGCAAATATTTTGGGGATCATTTGGCCACGACTTG...AATGTACCAGCTCAGCTTATCAGAAAATACCATGTTACCCAGCAGCCAAAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR GCA 90 bp ATGCTGAAGCAGGAGGAGCAGCCTGGCAACCTAGTAAAATCCTACTTTAAAATACAGCGTGTGTGTAACTaGTATGAATTTAGGAAGCGA +
Preference number: 2 (lower is better)
Translates to: MLKQEEQPGNLVKSYFKIQRVCN*YEFRKR
Trigger: TCGCTTCCTAAATTCATAGCAGTTACACACACGCTG...TATTTTAAAGTAGGATTTTACTAGGTTGCCAGGCTGCTCCTCCTGCTTCAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp AGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGAAAGGGGGAGAAAATATTTaGTACATGTTTGCTATGCAA +
Preference number: 2 (lower is better)
Translates to: STSHLPSICDPSLQQEVKGGENI*YMFAMQ
Trigger: TTGCATAGCAAACATGTACCAAATATTTTCTCCCCC...TTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR TCA 90 bp AGCATAGAACCTTTCAGGACTCACTTCCTTATCACCTCAGCTATAACGCTTCCTATGTTAGAGGCAATTTaGCCATACCTGAGTAAGATA +
Preference number: 2 (lower is better)
Translates to: SIEPFRTHFLITSAITLPMLEAI*PYLSKI
Trigger: TATCTTACTCAGGTATGGTCAAATTGCCTCTAACAT...AGGAAGCGTTATAGCTGAGGTGATAAGGAAGTGAGTCCTGAAAGGTTCTATGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp ATGCTGAAGCAGGAGGAGCAGCCTGGCAACCTAGTAAAATCCTACTTTAAAATATTTGCAAATGTGAAGTaGGTATTTTCAACTTCCTTC +
Preference number: 2 (lower is better)
Translates to: MLKQEEQPGNLVKSYFKIFANVK*VFSTSF
Trigger: GAAGGAAGTTGAAAATACCCACTTCACATTTGCAAA...TATTTTAAAGTAGGATTTTACTAGGTTGCCAGGCTGCTCCTCCTGCTTCAGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CCA 90 bp TTCTGTCTCTCTCCGCATGTTTTAAATCCTAAAATGTTACAACGAGTTGACTTTCGTCACTGTAGTAAATaGTGTATATTTTCCTGGTGG +
Preference number: 2 (lower is better)
Translates to: FCLSPHVLNPKMLQRVDFRHCSK*CIFSWW
Trigger: CCACCAGGAAAATATACACCATTTACTACAGTGACG...AAAGTCAACTCGTTGTAACATTTTAGGATTTAAAACATGCGGAGAGAGACAGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 72 bp CCTTGGGAGACTGGAACCAGGACATGCCCCATCCCCTaGTGGGATACAGTGTCTGTGACACTCACGTCCCAT +
Preference number: 3 (lower is better)
Translates to: PWETGTRTCPIP*WDTVSVTLTSH
Trigger: ATGGGACGTGAGTGTCACAGACACTGTATCCCAGCAGGGGATGGGGCATGTCCTGGTTCCAGTCTCCCAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp TGGGAGACTGGAACCAGGACATGCCCCATCCCCTGCTaGGATACAGTGTCTGTGACACTCACGTCCCATCTA +
Preference number: 3 (lower is better)
Translates to: WETGTRTCPIPC*DTVSVTLTSHL
Trigger: TAGATGGGACGTGAGTGTCACAGACACTGTATCCCAGCAGGGGATGGGGCATGTCCTGGTTCCAGTCTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp GGACATGCCCCATCCCCTGCTGGGATACAGTGTCTGTaGCACTCACGTCCCATCTACAAAGTGGCATGTACT +
Preference number: 3 (lower is better)
Translates to: GHAPSPAGIQCL*HSRPIYKVACT
Trigger: AGTACATGCCACTTTGTAGATGGGACGTGAGTGTCACAGACACTGTATCCCAGCAGGGGATGGGGCATGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp AATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTaGGCTTTACATCCTACCTTACCAGCTCCAACTGAG +
Preference number: 3 (lower is better)
Translates to: NRAVLCLWKATS*ALHPTLPAPTE
Trigger: CTCAGTTGGAGCTGGTAAGGTAGGATGTAAAGCCCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp GGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTaGCTTCCTGGAGACGCTCTTATCGGGTCTCTGGTC +
Preference number: 3 (lower is better)
Translates to: GAQRRWTYSIKI*LPGDALIGSLV
Trigger: GACCAGAGACCCGATAAGAGCGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp TTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTGGCCCACTCACAGTTaGACCACATTGGGAAGCAAT +
Preference number: 3 (lower is better)
Translates to: LQRCVYTALIRCDGCPSKWPTHS*TTLGSN
Trigger: ATTGCTTCCCAATGTGGTCAAACTGTGAGTGGGCCA...CTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTTAAGAGTTCACAGGTaGGCCTGGGAGCCCAGAGAA +
Preference number: 3 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKLRVHR*AWEPRE
Trigger: TTCTCTGGGCTCCCAGGCCAACCTGTGAACTCTTAA...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp CTCGTGGGCTTTACATCCTACCTTACCAGCTCCAACTaGGGTCCCTCTATTTTCTGTCTCTCTCCGCATGTT +
Preference number: 3 (lower is better)
Translates to: LVGFTSYLTSSN*GPSIFCLSPHV
Trigger: AACATGCGGAGAGAGACAGAAAATAGAGGGACCTCAGTTGGAGCTGGTAAGGTAGGATGTAAAGCCCACGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 72 bp GCAGGAACCACAGTACAAGCATGTAAAGTTTGCAGTTaGAAAGCGGACTCTGCTTCCCAGGAGCAGCAACTT +
Preference number: 3 (lower is better)
Translates to: AGTTVQACKVCS*KADSASQEQQL
Trigger: AAGTTGCTGCTCCTGGGAAGCAGAGTCCGCTTTGCAACTGCAAACTTTACATGCTTGTACTGTGGTTCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp TTACCCAGGGGCTGTAATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTGGTCTAATACAATGCAATaGCTATGCAAACTGTTGTGC +
Preference number: 3 (lower is better)
Translates to: LPRGCNRAVLCLWKATSWSNTMQ*LCKLLC
Trigger: GCACAACAGTTTGCATAGCAATTGCATTGTATTAGA...CCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATTACAGCCCCTGGGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 72 bp GTGTACACCGTGGGAAAATCTCAGCGTGTGTGTAACTaGTATGAATTTAGGAAGCGAGCCTCCTTGCAAGAG +
Preference number: 3 (lower is better)
Translates to: VYTVGKSQRVCN*YEFRKRASLQE
Trigger: CTCTTGCAAGGAGGCTCGCTTCCTAAATTCATAGCAGTTACACACACGCTGAGATTTTCCCACGGTGTACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp TGGCACACACCTTTAATCCCATCACTCAGGAGGCACTaGGAGTTTGAGGCTAGCCTGGTCTACTTAATGAAA +
Preference number: 3 (lower is better)
Translates to: WHTPLIPSLRRH*EFEASLVYLMK
Trigger: TTTCATTAAGTAGACCAGGCTAGCCTCAAACTCCCAGTGCCTCCTGAGTGATGGGATTAAAGGTGTGTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp GTAAAGTTTGCAGTTGCAAAGCGGACTCTGCTTCCCAGGAGCAGCAACTTGGAAGTAAAATTACTGCTATaGGCTGTACAGCCAAAGGCT +
Preference number: 3 (lower is better)
Translates to: VKFAVAKRTLLPRSSNLEVKLLL*AVQPKA
Trigger: AGCCTTTGGCTGTACAGCCAATAGCAGTAATTTTAC...TTCCAAGTTGCTGCTCCTGGGAAGCAGAGTCCGCTTTGCAACTGCAAACTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp CAAGTACATGTTTGGGTCCTACCTTGTGGCTGTAACTaGATAGGGGTAAGCAGGAACCACAGTACAAGCATG +
Preference number: 3 (lower is better)
Translates to: QVHVWVLPCGCN*IGVSRNHSTSM
Trigger: CATGCTTGTACTGTGGTTCCTGCTTACCCCTATTCAGTTACAGCCACAAGGTAGGACCCAAACATGTACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp TCCTCACATTCCCACCATCAGTCTAGAGAACTATGTTaGAGCACCAGCCACCTACCTTCTATTTGTGACCCA +
Preference number: 3 (lower is better)
Translates to: SSHSHHQSRELC*STSHLPSICDP
Trigger: TGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAACATAGTTCTCTAGACTGATGGTGGGAATGTGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp GCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTaGCCAAATGATCCCCAAAATATTTGCTCAGAGTTT +
Preference number: 3 (lower is better)
Translates to: ALIRCDGCPSKS*PNDPQNICSEF
Trigger: AAACTCTGAGCAAATATTTTGGGGATCATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp TTGCAAAGCGGACTCTGCTTCCCAGGAGCAGCAACTTaGAAATGGATTAAAGACTTTGAAGGGTACAGAACG +
Preference number: 3 (lower is better)
Translates to: LQSGLCFPGAAT*KWIKDFEGYRT
Trigger: CGTTCTGTACCCTTCAAAGTCTTTAATCCATTTCCAAGTTGCTGCTCCTGGGAAGCAGAGTCCGCTTTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp AGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGAAACCCTTTCTTCCAAACTaGGCAGATAACTCAAGGAAA +
Preference number: 3 (lower is better)
Translates to: STSHLPSICDPSLQQEVKPFLPN*ADNSRK
Trigger: TTTCCTTGAGTTATCTGCCAAGTTTGGAAGAAAGGG...TTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 72 bp CTCCTCAGTGAGGAACCCATCTATTCATCTGGTAATTaGCAAGTCCGAGAACCCCAAATATTTCCTTCATCA +
Preference number: 3 (lower is better)
Translates to: LLSEEPIYSSGN*QVREPQIFPSS
Trigger: TGATGAAGGAAATATTTGGGGTTCTCGGACTTGGCAATTACCAGATGAATAGATGGGTTCCTCACTGAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp GCAAAAGAGCAGGTGTCTTTAGGTTTTCCCTGCAATTaGTGGAACTCCTCTTTCTCTCTGTATCTTTGTGCT +
Preference number: 3 (lower is better)
Translates to: AKEQVSLGFPCN*WNSSFSLYLCA
Trigger: AGCACAAAGATACAGAGAGAAAGAGGAGTTCCATCAATTGCAGGGAAAACCTAAAGACACCTGCTCTTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp ACTATGTTGAAGCACCAGCCACCTACCTTCTATTTGTaGCCCATCCTTACAACAGGAAGTGAAAATGAAATG +
Preference number: 3 (lower is better)
Translates to: TMLKHQPPTFYL*PILTTGSENEM
Trigger: CATTTCATTTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAACATAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp AAATTGTATAGACGAGTAGGTTTCACGTGTACACCGTaGGAAAATCTCAGCGTGTGTGTAACTGCTATGAAT +
Preference number: 3 (lower is better)
Translates to: KLYRRVGFTCTP*ENLSVCVTAMN
Trigger: ATTCATAGCAGTTACACACACGCTGAGATTTTCCCACGGTGTACACGTGAAACCTACTCGTCTATACAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp AAATTAACTGGTAAGTTAAGAGTTCACAGGTTGGCCTaGGAGCCCAGAGAAGATGGACATACTCTATTAAGA +
Preference number: 3 (lower is better)
Translates to: KLTGKLRVHRLA*EPREDGHTLLR
Trigger: TCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCAGGCCAACCTGTGAACTCTTAACTTACCAGTTAATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp GCACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTATTTGCTCAGAGTTTaGTTTTCCAGCCTGCACAGT +
Preference number: 3 (lower is better)
Translates to: APFSLSKLPIYCRHKLQRYLLRV*FSSLHS
Trigger: ACTGTGCAGGCTGGAAAACAAAACTCTGAGCAAATA...CCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp CACCAAGACGTGGTAAGCCCAGCTGTGTATATTTTCTaGGTCTTCAGATTAACAACACAGAACATAAGTGAT +
Preference number: 3 (lower is better)
Translates to: HQDVVSPAVYIF*VFRLTTQNISD
Trigger: ATCACTTATGTTCTGTGTTGTTAATCTGAAGACTCAGAAAATATACACAGCTGGGCTTACCACGTCTTGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR GCA 72 bp AAGACTTTGAAGGGTACAGAACGTATTGCATCTTCTTaGATTTTTGTCCTTAATGGCAGTGCAGGCTATTCT +
Preference number: 3 (lower is better)
Translates to: KTLKGTERIASS*IFVLNGSAGYS
Trigger: AGAATAGCCTGCACTGCCATTAAGGACAAAAATGCAAGAAGATGCAATACGTTCTGTACCCTTCAAAGTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp CACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTGGCTGCATAATGAAATaGCTTCTTTTGTTGGCTACA +
Preference number: 3 (lower is better)
Translates to: HPFLSQNYPYTVGINCRGGCIMK*LLLLAT
Trigger: TGTAGCCAACAAAAGAAGCAATTTCATTATGCAGCC...ACCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR-3UTR CAA 90 bp CACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTATCCTGTTAAAAGCTTaGTGGCTATGTCATGAGATC +
Preference number: 3 (lower is better)
Translates to: HPFLSQNYPYTVGINCRGILLKA*WLCHEI
Trigger: GATCTCATGACATAGCCACAAAGCTTTTAACAGGAT...ACCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR TCA 72 bp CTTATTTACAGTGTTTATAGTCTGTTCCTCTGTTCCTaGGCATCACTGTTGAATACCCCAAACAGAACTTTT +
Preference number: 3 (lower is better)
Translates to: LIYSVYSLFLCS*ASLLNTPNRTF
Trigger: AAAAGTTCTGTTTGGGGTATTCAACAGTGATGCTCAGGAACAGAGGAACAGACTATAAACACTGTAAATAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CCA 72 bp ATCATTTACTACAGTTCTTCCCCTTTCTTCCAAACTTaGCAGATAACTCAAGGAAATGGTAGCAGGAAAATA +
Preference number: 3 (lower is better)
Translates to: IIYYSSSPFFQT*QITQGNGSRKI
Trigger: TATTTTCCTGCTACCATTTCCTTGAGTTATCTGCCAAGTTTGGAAGAAAGGGGAAGAACTGTAGTAAATGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp TTGTGCCTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCGGCGTCCCCCAACAGTaGTCAGAACTCGGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: LCLRWGRGPALSNYRGGVGVPQQ*SELGSR
Trigger: GCGGCTGCCGAGTTCTGATCACTGTTGGGGGACGCC...GACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAGGCACAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp ATGGTACACGCCTGTAATTCCAGCCTACTGGGGATGCTGAAGCAGGAGGAGCAGCGGGGCGTGCTCAGCTaGGGCAGCTCCTGCCACGCG +
Preference number: 4 (lower is better)
Translates to: MVHACNSSLLGMLKQEEQRGVLS*GSSCHA
Trigger: CGCGTGGCAGGAGCTGCCCCAGCTGAGCACGCCCCG...CTGCTCCTCCTGCTTCAGCATCCCCAGTAGGCTGGAATTACAGGCGTGTACCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp TTGTGCCTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCCTCGGGACACGCTGTTaGGCATGGCCAGCGTGCAGC +
Preference number: 4 (lower is better)
Translates to: LCLRWGRGPALSNYRGGVLGTRC*AWPACS
Trigger: GCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAG...GACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAGGCACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp TTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGAGGACACGCCCACGGTaGCCTCGGGCAGCTCGTCGT +
Preference number: 4 (lower is better)
Translates to: LQRCVYTALIRCDGCPSKRTRPR*PRAARR
Trigger: ACGACGAGCTGCCCGAGGCCACCGTGGGCGTGTCCT...CTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp ATGGTACACGCCTGTAATTCCAGCCTACTGGGGATGCTGAAGCAGGAGGAGCAGGCTGCCATTGGTTGGTaGAGGGCACGTAGCACTCCA +
Preference number: 4 (lower is better)
Translates to: MVHACNSSLLGMLKQEEQAAIGW*RARSTP
Trigger: TGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGC...CTGCTCCTCCTGCTTCAGCATCCCCAGTAGGCTGGAATTACAGGCGTGTACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp AGCCTCCTTGCAAGAGTGCCTGTAACAAACTCTAGTGGCCACCCAGTGGCTGCAACCTGCAGAAATTGCTaGCTGCGTGCTTGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SLLARVPVTNSSGHPVAATCRNC*LRAWLG
Trigger: ACCAAGCCAAGCACGCAGTCAGCAATTTCTGCAGGT...TGCAGCCACTGGGTGGCCACTAGAGTTTGTTACAGGCACTCTTGCAAGGAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp TTACCCAGGGGCTGTAATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTGGACAAGGGTGTGGATCTaGAGGTACACAGCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: LPRGCNRAVLCLWKATSWTRVWI*RYTAAE
Trigger: TTCTGCTGCTGTGTACCTCCAGATCCACACCCTTGT...CCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATTACAGCCCCTGGGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp AGCCTCCTTGCAAGAGTGCCTGTAACAAACTCTAGTGGCCACCCAGTGGCTGCAGCTTGGCTTGGTTTCTaGCGTCATTCTGGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: SLLARVPVTNSSGHPVAAAWLGF*RHSGPH
Trigger: GTGAGGACCAGAATGACGCCAGAAACCAAGCCAAGC...TGCAGCCACTGGGTGGCCACTAGAGTTTGTTACAGGCACTCTTGCAAGGAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 72 bp ACAGTTGGAATAAGATGTAGCCATCCCTCAGTGTCCTaGGGAGACTGGAACCAGGACATGCCCCATCCCCTG +
Preference number: 4 (lower is better)
Translates to: TVGIRCSHPSVS*GDWNQDMPHPL
Trigger: CAGGGGATGGGGCATGTCCTGGTTCCAGTCTCCCAAGGACACTGAGGGATGGCTACATCTTATTCCAACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp CTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCTGTTGTATCTTTACAAGGGTGTaGATCTGGAGGTACACAGCA +
Preference number: 4 (lower is better)
Translates to: LRWGRGPALSNYRGGVCCIFTRV*IWRYTA
Trigger: TGCTGTGTACCTCCAGATCCACACCCTTGTAAAGAT...ACAACAGACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp GCTTTGTGGCTATGTCATGAGATCTTTTTAAAAGTTCTTTCCAGTCAAGTAGGGGCGGCCCCAGCTGGCTaGCCCCCATCACGTACAGCC +
Preference number: 4 (lower is better)
Translates to: ALWLCHEIFLKVLSSQVGAAPAG*PPSRTA
Trigger: GGCTGTACGTGATGGGGGGCAGCCAGCTGGGGCCGC...CCCTACTTGACTGGAAAGAACTTTTAAAAAGATCTCATGACATAGCCACAAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGGGCTGCCATTGGTTaGTGGAGGGCACGTAGCACT +
Preference number: 4 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKWAAIG*WRARST
Trigger: AGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCA...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGAGTGAATCCAGGTGTTaGAGCGGGGATCGTACCTGC +
Preference number: 4 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKSESRC*SGDRTC
Trigger: GCAGGTACGATCCCCGCTTCAACACCTGGATTCACT...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp TGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTGGCTTCCTGGAGACGTTCATGCTGCCCAAGTaGATCCAGGTGTTGAAGCGG +
Preference number: 4 (lower is better)
Translates to: WEPREDGHTLLRSGFLETFMLPK*IQVLKR
Trigger: CCGCTTCAACACCTGGATTCACTTGGGCAGCATGAA...CGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp TTACCCAGGGGCTGTAATCGGGCTGTGCTTTGCCTCTGGAAAGCAACCTCGTGGGGATCAGAAAATCGCTaGACATCTTTACAAGGGTGT +
Preference number: 4 (lower is better)
Translates to: LPRGCNRAVLCLWKATSWGSENR*TSLQGC
Trigger: ACACCCTTGTAAAGATGTGCAGCGATTTTCTGATCC...CCACGAGGTTGCTTTCCAGAGGCAAAGCACAGCCCGATTACAGCCCCTGGGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp TTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGATCACAGCCACACACTaGTTAAAACTCTTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: LQRCVYTALIRCDGCPSKITATH*LKLLAG
Trigger: GCCAGCCAAGAGTTTTAATCAGTGTGTGGCTGTGAT...CTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp GGAACCACAGTACAAGCATGTAAAGTTTGCAGTTGCAAAGCGGACTCTGCTTCCGCTTCTGGTTCATGCTaGCCAAGTGAATCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: GTTVQACKVCSCKADSASASGSC*PSESRC
Trigger: ACACCTGGATTCACTTGGGCAGCATGAACCAGAAGC...GGAAGCAGAGTCCGCTTTGCAACTGCAAACTTTACATGCTTGTACTGTGGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp AGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGAAATGCGCTTCTGGTTCATaGTGCCCAAGTGAATCCAGG +
Preference number: 4 (lower is better)
Translates to: STSHLPSICDPSLQQEVKCASGS*CPSESR
Trigger: CCTGGATTCACTTGGGCAGCATGAACCAGAAGCGCA...TTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp TTGTTTTGGCTGCTGGGTAACATGGTATTTTCTGATAAGCTGAGCTGGTACATTACACGCTGTTGGGCATaGCCAGCGTGCAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: LFWLLGNMVFSDKLSWYITRCWA*PACSRT
Trigger: TGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGT...AATGTACCAGCTCAGCTTATCAGAAAATACCATGTTACCCAGCAGCCAAAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp GAATTTAAAGCGGTCCAGGCACTCCTCTGGATCGATTTGAACCACCGTCACTGTCGGTTTGAACATAATTaGCCAGGTCTTGTGCAGAGA +
Preference number: 4 (lower is better)
Translates to: EFKAVQALLWIDLNHRHCRFEHN*PGLVQR
Trigger: TCTCTGCACAAGACCTGGTCAATTATGTTCAAACCG...ACAGTGACGGTGGTTCAAATCGATCCAGAGGAGTGCCTGGACCGCTTTAAATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp TGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTGGCTTCCTGGAGACGCATTGCGATCTGGAATaGTACAAGCTCAGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: WEPREDGHTLLRSGFLETHCDLE*YKLRRQ
Trigger: TTGCCTTCTGAGCTTGTAGCATTCCAGATCGCAATG...CGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp AGCATAGAACCTTTCAGGACTCACTTCCTTATCACCTCAGCTATAACGCTTCCTAACCTTCGAGGAGGTTaGGGCCATAAGAAGTGTCTG +
Preference number: 4 (lower is better)
Translates to: SIEPFRTHFLITSAITLPNLRGG*GHKKCL
Trigger: CAGACACTTCTTATGGCCCCAACCTCCTCGAAGGTT...AGGAAGCGTTATAGCTGAGGTGATAAGGAAGTGAGTCCTGAAAGGTTCTATGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 72 bp CTCCACGTGAACGAGGGGTCAGTAAAATTACTGCTATaGGCTGTACAGCCAAAGGCTAAGCTGCAGTTAATG +
Preference number: 4 (lower is better)
Translates to: LHVNEGSVKLLL*AVQPKAKLQLM
Trigger: CATTAACTGCAGCTTAGCCTTTGGCTGTACAGCCAATAGCAGTAATTTTACTGACCCCTCGTTCACGTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp GTAAAGTTTGCAGTTGCAAAGCGGACTCTGCTTCCCAGGAGCAGCAACTTGGAATATAAAAGTACTCGCTaGATGAAGCCATCACTGACT +
Preference number: 4 (lower is better)
Translates to: VKFAVAKRTLLPRSSNLEYKSTR*MKPSLT
Trigger: AGTCAGTGATGGCTTCATGCAGCGAGTACTTTTATA...TTCCAAGTTGCTGCTCCTGGGAAGCAGAGTCCGCTTTGCAACTGCAAACTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATCATTTCATTGCGATCTaGAATGCTACAAGCTCAGAA +
Preference number: 4 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNHFIAI*NATSSE
Trigger: TTCTGAGCTTGTAGCATTCCAGATCGCAATGAAATG...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp ATGCTGAAGCAGGAGGAGCAGCCTGGCAACCTAGTAAAATCCTACTTTAAAATACTGGTCCTCACCACCTaGTACATAAAGGAATCCATC +
Preference number: 4 (lower is better)
Translates to: MLKQEEQPGNLVKSYFKILVLTT*YIKESI
Trigger: GATGGATTCCTTTATGTAGCAGGTGGTGAGGACCAG...TATTTTAAAGTAGGATTTTACTAGGTTGCCAGGCTGCTCCTCCTGCTTCAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp ATGCTGAAGCAGGAGGAGCAGCCTGGCAACCTAGTAAAATCCTACTTTAAAATAGCAGAAATTGCTGACTaGGTGCTTGGCTTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: MLKQEEQPGNLVKSYFKIAEIAD*VLGLVS
Trigger: AGAAACCAAGCCAAGCACGCAGTCAGCAATTTCTGC...TATTTTAAAGTAGGATTTTACTAGGTTGCCAGGCTGCTCCTCCTGCTTCAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATGTAAGTGATAGTTCATaGCATCCACAAGCAGTTTAT +
Preference number: 4 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNVSDSS*HPQAVY
Trigger: ATAAACTGCTTGTGGATGCCATGAACTATCACTTAC...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 72 bp GGCAAAAGAGCAGGTGTCTTTAGGTTTTCCCTGCAATaGATGGAACTCCTCTTTCTCTCTGTATCTTTGTGC +
Preference number: 4 (lower is better)
Translates to: GKRAGVFRFSLQ*MELLFLSVSLC
Trigger: GCACAAAGATACAGAGAGAAAGAGGAGTTCCATCAATTGCAGGGAAAACCTAAAGACACCTGCTCTTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp AGCATAGAACCTTTCAGGACTCACTTCCTTATCACCTCAGCTATAACGCTTCCTTACCAAAGCGAATGTTaGTTAGAAGATCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: SIEPFRTHFLITSAITLPYQSEC*LEDLPH
Trigger: ATGCGGCAGATCTTCTAAGCAACATTCGCTTTGGTA...AGGAAGCGTTATAGCTGAGGTGATAAGGAAGTGAGTCCTGAAAGGTTCTATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp TTGTTTTGGCTGCTGGGTAACATGGTATTTTCTGATAAGCTGAGCTGGTACATTTCCCGGATGAATTTCTaGGCTGTTGCCTTTGCGTTT +
Preference number: 4 (lower is better)
Translates to: LFWLLGNMVFSDKLSWYISRMNF*AVAFAF
Trigger: AAACGCAAAGGCAACAGCCCAGAAATTCATCCGGGA...AATGTACCAGCTCAGCTTATCAGAAAATACCATGTTACCCAGCAGCCAAAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR TCA 90 bp TTGTTTTGGCTGCTGGGTAACATGGTATTTTCTGATAAGCTGAGCTGGTACATTTGGTTTTGGTACCGATaGCCAAGTCACATAGAAAGC +
Preference number: 4 (lower is better)
Translates to: LFWLLGNMVFSDKLSWYIWFWYR*PSHIES
Trigger: GCTTTCTATGTGACTTGGTCATCGGTACCAAAACCA...AATGTACCAGCTCAGCTTATCAGAAAATACCATGTTACCCAGCAGCCAAAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR GCA 90 bp CACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTAGAAGATCTGCCGCATaGTTCACTCTCTTTTGGTCG +
Preference number: 4 (lower is better)
Translates to: HPFLSQNYPYTVGINCRGRRSAA*FTLFWS
Trigger: CGACCAAAAGAGAGTGAAGCATGCGGCAGATCTTCT...ACCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp GCTTTGTGGCTATGTCATGAGATCTTTTTAAAAGTTCTTTCCAGTCAAGTAGGGGGTCTTGTGCAGAGATaGTACCAAAGCGAATGTTGC +
Preference number: 4 (lower is better)
Translates to: ALWLCHEIFLKVLSSQVGGLVQR*YQSECC
Trigger: GCAACATTCGCTTTGGTACCATCTCTGCACAAGACC...CCCTACTTGACTGGAAAGAACTTTTAAAAAGATCTCATGACATAGCCACAAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CCA 90 bp GCACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTCGGGGTTGAAGCACTaGATGCATTTCTTGTACTTC +
Preference number: 4 (lower is better)
Translates to: APFSLSKLPIYCRHKLQRSGLKH*MHFLYF
Trigger: GAAGTACAAGAAATGCATCCAGTGCTTCAACCCCGA...CCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 72 bp TCCCAGGAGCAGCAACTTGGAAATGGATTAAAGACTTaGAAGGGTACAGAACGTATTGCATCTTCTTGCATT +
Preference number: 4 (lower is better)
Translates to: SQEQQLGNGLKT*KGTERIASSCI
Trigger: AATGCAAGAAGATGCAATACGTTCTGTACCCTTCAAAGTCTTTAATCCATTTCCAAGTTGCTGCTCCTGGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 72 bp AACTTCCTTCAAAGAAACAGAGAGGAAAATACTCCTTaGGATAGGAAATTGTATAGACGAGTAGGTTTCACG +
Preference number: 4 (lower is better)
Translates to: NFLQRNREENTP*DRKLYRRVGFT
Trigger: CGTGAAACCTACTCGTCTATACAATTTCCTATCCAAAGGAGTATTTTCCTCTCTGTTTCTTTGAAGGAAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
3UTR CAA 72 bp AACAAACATATTTTAGGAGTGTCCAAGATAAACATTTaGTGTCAAACTCTGTTCGAGGGAATGCTAAATGGC +
Preference number: 4 (lower is better)
Translates to: NKHILGVSKINI*CQTLFEGMLNG
Trigger: GCCATTTAGCATTCCCTCGAACAGAGTTTGACACAAAATGTTTATCTTGGACACTCCTAAAATATGTTTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp CGCCCAGCAGGTAGGCTCGCCCGTGCAGCGCCGAGACACCCGCCGTaGTCACGCCCACGGGCAGCGGCGCCACGAAGCTCCACTGGCGCG +
Preference number: 5 (lower is better)
Translates to: RPAGRLARAAPRHPP*SRPRAAAPRSSTGA
Trigger: CGCGCCAGTGGAGCTTCGTGGCGCCGCTGCCCGTGGGCGTGAGCACGGCGGGTGTCTCGGCGCTGCACGGGCGAGCCTACCTGCTGGGCG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp CGATGTAGCCGCCGGTCACGATCACGCGGCCGTCGGCCACGGCGCTaGCGTGGCAGCAGCGCGCCACCTCGAGCGGCGCTTTGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: RCSRRSRSRGRRPRR*RGSSAPPRAALWAA
Trigger: GGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCTGCCACGCCAGCGCCGTGGCCGACGGCCGCGTGATCGTGACCGGCGGCTACATCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp CGTCGAGCGCGGGGTCGTAGGCGCACACGGAGCGCGAGTACGCACTaGCGATGTAGCCGCCGGTCACGATCACGCGGCCGTCGGCCACGG +
Preference number: 5 (lower is better)
Translates to: RRARGRRRTRSASTH*RCSRRSRSRGRRPR
Trigger: CCGTGGCCGACGGCCGCGTGATCGTGACCGGCGGCTACATCGGCAGTGCGTACTCGCGCTCCGTGTGCGCCTACGACCCCGCGCTCGACG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp GCACGGAGGACACCGAGCTGGCCCGTGACTCTCGGGACACGCTGTTaGGCATGGCCAGCGTGCAGCAGGACACGCCCACGGTGGCCTCGG +
Preference number: 5 (lower is better)
Translates to: ARRTPSWPVTLGTRC*AWPACSRTRPRWPR
Trigger: CCGAGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCACGGGCCAGCTCGGTGTCCTCCGTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp AGCTGGCCCGTGACTCTCGGGACACGCTGTTGGGCATGGCCAGCGTaGAGCAGGACACGCCCACGGTGGCCTCGGGCAGCTCGTCGTCCT +
Preference number: 5 (lower is better)
Translates to: SWPVTLGTRCWAWPA*SRTRPRWPRAARRP
Trigger: AGGACGACGAGCTGCCCGAGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCACGGGCCAGCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp GGCAGCAGCGCGCCACCTCGAGCGGCGCTTTGGGCTGCCATTGGTTaGTGGAGGGCACGTAGCACTCCAGCGAAGCCAGGCTGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: GSSAPPRAALWAAIG*WRARSTPAKPGCPR
Trigger: CCGAGGGCAGCCTGGCTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCTGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp CCACGGCGCTGGCGTGGCAGCAGCGCGCCACCTCGAGCGGCGCTTTaGGCTGCCATTGGTTGGTGGAGGGCACGTAGCACTCCAGCGAAG +
Preference number: 5 (lower is better)
Translates to: PRRWRGSSAPPRAAL*AAIGWWRARSTPAK
Trigger: CTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCTGCCACGCCAGCGCCGTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp AGGACACCGAGCTGGCCCGTGACTCTCGGGACACGCTGTTGGGCATaGCCAGCGTGCAGCAGGACACGCCCACGGTGGCCTCGGGCAGCT +
Preference number: 5 (lower is better)
Translates to: RTPSWPVTLGTRCWA*PACSRTRPRWPRAA
Trigger: AGCTGCCCGAGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCACGGGCCAGCTCGGTGTCCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp AGCAGCGCGCCACCTCGAGCGGCGCTTTGGGCTGCCATTGGTTGGTaGAGGGCACGTAGCACTCCAGCGAAGCCAGGCTGCCCTCGGAGT +
Preference number: 5 (lower is better)
Translates to: SSAPPRAALWAAIGW*RARSTPAKPGCPRS
Trigger: ACTCCGAGGGCAGCCTGGCTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp AGCTCGTCGTCCTCCGTCCACTCGTTGAGCTCGGGGTTGAAGCACTaGATGCATTTCTTGTACTTCTTCTCGCCCTCGTTCCAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: SSSSSVHSLSSGLKH*MHFLYFFSPSFQPP
Trigger: GGGCGGCTGGAACGAGGGCGAGAAGAAGTACAAGAAATGCATCCAGTGCTTCAACCCCGAGCTCAACGAGTGGACGGAGGACGACGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp TTGTGCCTACGCTGGGGTAGGGGCCCAGCTCTCAGCAACTACAGAGGTGGAGTCATGACAATCAGCGTCTaGCATCATCCTCGGTACGGT +
Preference number: 5 (lower is better)
Translates to: LCLRWGRGPALSNYRGGVMTISV*HHPRYG
Trigger: ACCGTACCGAGGATGATGCAAGACGCTGATTGTCAT...GACTCCACCTCTGTAGTTGCTGAGAGCTGGGCCCCTACCCCAGCGTAGGCACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS TCA 90 bp ACGCTCAGGCTGAAGTGCGTGCGCTTCTGGTTCATGCTGCCCAAGTaGATCCAGGTGTTGAAGCGGGGATCGTACCTGCAGAAATTGCTG +
Preference number: 5 (lower is better)
Translates to: TLRLKCVRFWFMLPK*IQVLKRGSYLQKLL
Trigger: CAGCAATTTCTGCAGGTACGATCCCCGCTTCAACACCTGGATTCACTTGGGCAGCATGAACCAGAAGCGCACGCACTTCAGCCTGAGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATCGCTTTGGGCTGCCATaGGTTGGTGGAGGGCACGTA +
Preference number: 5 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNRFGLP*VGGGHV
Trigger: TACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCG...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp GAATTTAAAGCGGTCCAGGCACTCCTCTGGATCGATTTGAACCACCGTCACTGTTCCTCCGTCCACTCGTaGAGCTCGGGGTTGAAGCAC +
Preference number: 5 (lower is better)
Translates to: EFKAVQALLWIDLNHRHCSSVHS*SSGLKH
Trigger: GTGCTTCAACCCCGAGCTCAACGAGTGGACGGAGGA...ACAGTGACGGTGGTTCAAATCGATCCAGAGGAGTGCCTGGACCGCTTTAAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp AGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGTGAAATCTCGGGACACGCTGTaGGGCATGGCCAGCGTGCAG +
Preference number: 5 (lower is better)
Translates to: STSHLPSICDPSLQQEVKSRDTL*GMASVQ
Trigger: CTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGA...TTTCACTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp ATGGTACACGCCTGTAATTCCAGCCTACTGGGGATGCTGAAGCAGGAGGAGCAGCATCCTCGGTACGGTTaGAACATAATTGACCAGGTC +
Preference number: 5 (lower is better)
Translates to: MVHACNSSLLGMLKQEEQHPRYG*NIIDQV
Trigger: GACCTGGTCAATTATGTTCAAACCGTACCGAGGATG...CTGCTCCTCCTGCTTCAGCATCCCCAGTAGGCTGGAATTACAGGCGTGTACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp GTTGAAGCACCAGCCACCTACCTTCTATTTGTGACCCATCCTTACAACAGGAAGACACAGCTAAGGCTGTaGCTTCCCTCCAGAAGCCCA +
Preference number: 5 (lower is better)
Translates to: VEAPATYLLFVTHPYNRKTQLRL*LPSRSP
Trigger: TGGGCTTCTGGAGGGAAGCAACAGCCTTAGCTGTGT...CTTCCTGTTGTAAGGATGGGTCACAAATAGAAGGTAGGTGGCTGGTGCTTCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp TGGGAGCCCAGAGAAGATGGACATACTCTATTAAGATCTGGCTTCCTGGAGACGTCGTACCTGCAGAAATaGCTGACTGCGTGCTTGGCT +
Preference number: 5 (lower is better)
Translates to: WEPREDGHTLLRSGFLETSYLQK*LTACLA
Trigger: AGCCAAGCACGCAGTCAGCAATTTCTGCAGGTACGA...CGTCTCCAGGAAGCCAGATCTTAATAGAGTATGTCCATCTTCTCTGGGCTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp GTAAAGTTTGCAGTTGCAAAGCGGACTCTGCTTCCCAGGAGCAGCAACTTGGAATCGTTGAGCTCGGGGTaGAAGCACTGGATGCATTTC +
Preference number: 5 (lower is better)
Translates to: VKFAVAKRTLLPRSSNLESLSSG*KHWMHF
Trigger: GAAATGCATCCAGTGCTTCAACCCCGAGCTCAACGA...TTCCAAGTTGCTGCTCCTGGGAAGCAGAGTCCGCTTTGCAACTGCAAACTTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp TTGCAGAGGTGTGTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGCACTGGATGCATTTCTaGTACTTCTTCTCGCCCTCG +
Preference number: 5 (lower is better)
Translates to: LQRCVYTALIRCDGCPSKHWMHF*YFFSPS
Trigger: CGAGGGCGAGAAGAAGTACAAGAAATGCATCCAGTG...CTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGACACACCTCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp TGCGTGCTTGGCTTGGTTTCTGGCGTCATTCTGGTCCTCACCACCTaGTACATAAAGGAATCCATCCATCACAGCCACACACTGATTAAA +
Preference number: 5 (lower is better)
Translates to: CVLGLVSGVILVLTT*YIKESIHHSHTLIK
Trigger: TTTAATCAGTGTGTGGCTGTGATGGATGGATTCCTTTATGTAGCAGGTGGTGAGGACCAGAATGACGCCAGAAACCAAGCCAAGCACGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp TTGTTTTGGCTGCTGGGTAACATGGTATTTTCTGATAAGCTGAGCTGGTACATTGCGTACAGCAGCCCGTaGAACACGCTCAGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: LFWLLGNMVFSDKLSWYIAYSSP*NTLRLK
Trigger: CTTCAGCCTGAGCGTGTTCAACGGGCTGCTGTACGC...AATGTACCAGCTCAGCTTATCAGAAAATACCATGTTACCCAGCAGCCAAAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp CTACCTTACCAGCTCCAACTGAGGTCCCTCTATTTTCTGTCTCTCTCCGCATGTATGATGGTCATCTCGTaGATCTCTGCCTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: LPYQLQLRSLYFLSLSACMMVIS*ISALFF
Trigger: GAAGAACAAGGCAGAGATCAACGAGATGACCATCAT...ACATGCGGAGAGAGACAGAAAATAGAGGGACCTCAGTTGGAGCTGGTAAGGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp ATGGTACACGCCTGTAATTCCAGCCTACTGGGGATGCTGAAGCAGGAGGAGCAGCGTAAGCTTCATAAATaGTTCGGATTCTGCAAATTC +
Preference number: 5 (lower is better)
Translates to: MVHACNSSLLGMLKQEEQRKLHK*FGFCKF
Trigger: GAATTTGCAGAATCCGAACAATTTATGAAGCTTACG...CTGCTCCTCCTGCTTCAGCATCCCCAGTAGGCTGGAATTACAGGCGTGTACCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp CTGATCTCTCGGATCAGAAAATCGCTGCACATCTTTACAAGGGTGTaGATCTGGAGGTACACAGCAGCAGAAATGATGCTTCCTATTGTG +
Preference number: 5 (lower is better)
Translates to: LISRIRKSLHIFTRV*IWRYTAAEMMLPIV
Trigger: CACAATAGGAAGCATCATTTCTGCTGCTGTGTACCTCCAGATCCACACCCTTGTAAAGATGTGCAGCGATTTTCTGATCCGAGAGATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp GTCTATACTGCCCTGATAAGATGTGATGGCTGCCCTAGCAAGTCGTGGCCAAATTCGTTGATCTCTGCCTaGTTCTTCTTGATAGTCTTC +
Preference number: 5 (lower is better)
Translates to: VYTALIRCDGCPSKSWPNSLISA*FFLIVF
Trigger: GAAGACTATCAAGAAGAACAAGGCAGAGATCAACGA...ATTTGGCCACGACTTGCTAGGGCAGCCATCACATCTTATCAGGGCAGTATAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp AACGAGGGGTCAGTAAAATTACTGCTATTGGCTGTACAGCCAAAGGCTAAGCTGTGGACATCAAAGGACTaGGTTTTGGTACCGATGACC +
Preference number: 5 (lower is better)
Translates to: NEGSVKLLLLAVQPKAKLWTSKD*VLVPMT
Trigger: GGTCATCGGTACCAAAACCAAGTCCTTTGATGTCCA...CAGCTTAGCCTTTGGCTGTACAGCCAATAGCAGTAATTTTACTGACCCCTCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp GAATTTAAAGCGGTCCAGGCACTCCTCTGGATCGATTTGAACCACCGTCACTGTATAATTGACCAGGTCTaGTGCAGAGATGGTACCAAA +
Preference number: 5 (lower is better)
Translates to: EFKAVQALLWIDLNHRHCIIDQV*CRDGTK
Trigger: TTTGGTACCATCTCTGCACAAGACCTGGTCAATTAT...ACAGTGACGGTGGTTCAAATCGATCCAGAGGAGTGCCTGGACCGCTTTAAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS TCA 90 bp GACAATCAGCGTCTTGCATCATCCTCGGTACGGTTTGAACATAATTaGCCAGGTCTTGTGCAGAGATGGTACCAAAGCGAATGTTGCTTA +
Preference number: 5 (lower is better)
Translates to: DNQRLASSSVRFEHN*PGLVQRWYQSECCL
Trigger: TAAGCAACATTCGCTTTGGTACCATCTCTGCACAAGACCTGGTCAATTATGTTCAAACCGTACCGAGGATGATGCAAGACGCTGATTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp AGCATAGAACCTTTCAGGACTCACTTCCTTATCACCTCAGCTATAACGCTTCCTGTACCAAAGCGAATGTaGCTTAGAAGATCTGCCGCA +
Preference number: 5 (lower is better)
Translates to: SIEPFRTHFLITSAITLPVPKRM*LRRSAA
Trigger: TGCGGCAGATCTTCTAAGCAACATTCGCTTTGGTAC...AGGAAGCGTTATAGCTGAGGTGATAAGGAAGTGAGTCCTGAAAGGTTCTATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp ATCGATTTGAACCACCGTCACTGTAGTAAATGGTGTATATTTTCCTGGTGGCCCGGCATTTCTGTAAGCTaGCTCCATCCATTTTCAGGG +
Preference number: 5 (lower is better)
Translates to: IDLNHRHCSKWCIFSWWPGISVS*LHPFSG
Trigger: CCCTGAAAATGGATGGAGCAAGCTTACAGAAATGCC...GGGCCACCAGGAAAATATACACCATTTACTACAGTGACGGTGGTTCAAATCGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp CACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTTTGCTGACTGCGTGCTaGGCTTGGTTTCTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: HPFLSQNYPYTVGINCRGLLTAC*AWFLAS
Trigger: TGACGCCAGAAACCAAGCCAAGCACGCAGTCAGCAA...ACCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp ATGCTGAAGCAGGAGGAGCAGCCTGGCAACCTAGTAAAATCCTACTTTAAAATATTTAGAGCATTCAGCTaGCTTAGGGGGCTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: MLKQEEQPGNLVKSYFKIFRAFS*LRGLSS
Trigger: AGAAGACAGCCCCCTAAGCAAGCTGAATGCTCTAAA...TATTTTAAAGTAGGATTTTACTAGGTTGCCAGGCTGCTCCTCCTGCTTCAGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp TTCTGCAAATTCGATGAAGTTATCCCGGATGAATTTCTGGGCTGTTaGCTTTGCGTTTTTCAAGCTGTAGGTCTCAGCAATGTTAACCAC +
Preference number: 5 (lower is better)
Translates to: FCKFDEVIPDEFLGC*LCVFQAVGLSNVNH
Trigger: GTGGTTAACATTGCTGAGACCTACAGCTTGAAAAACGCAAAGGCAACAGCCCAGAAATTCATCCGGGATAACTTCATCGAATTTGCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp TCTCGGATCAGAAAATCGCTGCACATCTTTACAAGGGTGTGGATCTaGAGGTACACAGCAGCAGAAATGATGCTTCCTATTGTGTATAAA +
Preference number: 5 (lower is better)
Translates to: SRIRKSLHIFTRVWI*RYTAAEMMLPIVYK
Trigger: TTTATACACAATAGGAAGCATCATTTCTGCTGCTGTGTACCTCCAGATCCACACCCTTGTAAAGATGTGCAGCGATTTTCTGATCCGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp AAGCGAATGTTGCTTAGAAGATCTGCCGCATGCTTCACTCTCTTTTaGTCGAATTCTAACCATTTCATTGCGATCTGGAATGCTACAAGC +
Preference number: 5 (lower is better)
Translates to: KRMLLRRSAACFTLF*SNSNHFIAIWNATS
Trigger: GCTTGTAGCATTCCAGATCGCAATGAAATGGTTAGAATTCGACCAAAAGAGAGTGAAGCATGCGGCAGATCTTCTAAGCAACATTCGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp AAATTCGATGAAGTTATCCCGGATGAATTTCTGGGCTGTTGCCTTTaGGTTTTTCAAGCTGTAGGTCTCAGCAATGTTAACCACGTACAT +
Preference number: 5 (lower is better)
Translates to: KFDEVIPDEFLGCCL*VFQAVGLSNVNHVH
Trigger: ATGTACGTGGTTAACATTGCTGAGACCTACAGCTTGAAAAACGCAAAGGCAACAGCCCAGAAATTCATCCGGGATAACTTCATCGAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 90 bp TGCTTCACTCTCTTTTGGTCGAATTCTAACCATTTCATTGCGATCTaGAATGCTACAAGCTCAGAAGGCAATTGTAAGTCGTCATCTACG +
Preference number: 5 (lower is better)
Translates to: CFTLFWSNSNHFIAI*NATSSEGNCKSSST
Trigger: CGTAGATGACGACTTACAATTGCCTTCTGAGCTTGTAGCATTCCAGATCGCAATGAAATGGTTAGAATTCGACCAAAAGAGAGTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 90 bp CTCGTTAATCTGTTCAAACGTAAGCTTCATAAATTGTTCGGATTCTaGAAATTCGATGAAGTTATCCCGGATGAATTTCTGGGCTGTTGC +
Preference number: 5 (lower is better)
Translates to: LVNLFKRKLHKLFGF*KFDEVIPDEFLGCC
Trigger: GCAACAGCCCAGAAATTCATCCGGGATAACTTCATCGAATTTGCAGAATCCGAACAATTTATGAAGCTTACGTTTGAACAGATTAACGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp CACCCTTTTCTCTCTCAAAATTACCCATATACTGTAGGCATAAATTGCAGAGGTTCTTGTGCGCCTAGATaGCAGTGTGTTTTGATGATA +
Preference number: 5 (lower is better)
Translates to: HPFLSQNYPYTVGINCRGSCAPR*QCVLMI
Trigger: TATCATCAAAACACACTGCAATCTAGGCGCACAAGA...ACCTCTGCAATTTATGCCTACAGTATATGGGTAATTTTGAGAGAGAAAAGGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS-3UTR CAA 90 bp TTGTTTTGGCTGCTGGGTAACATGGTATTTTCTGATAAGCTGAGCTGGTACATTATTCTAACCATTTCATaGCGATCTGGAATGCTACAA +
Preference number: 5 (lower is better)
Translates to: LFWLLGNMVFSDKLSWYIILTIS*RSGMLQ
Trigger: TTGTAGCATTCCAGATCGCAATGAAATGGTTAGAAT...AATGTACCAGCTCAGCTTATCAGAAAATACCATGTTACCCAGCAGCCAAAACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp CGCCCAGCGCCACCGCGCAGTGCCAGCCTCGGGGCGTaGTCAGCTGGGGCAGCTCCTGCCACGCGTCGAGCG +
Preference number: 6 (lower is better)
Translates to: RPAPPRSASLGA*SAGAAPATRRA
Trigger: CGCTCGACGCGTGGCAGGAGCTGCCCCAGCTGAGCACGCCCCGAGGCTGGCACTGCGCGGTGGCGCTGGGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp CGCCGGTCACGATCACGCGGCCGTCGGCCACGGCGCTaGCGTGGCAGCAGCGCGCCACCTCGAGCGGCGCTT +
Preference number: 6 (lower is better)
Translates to: RRSRSRGRRPRR*RGSSAPPRAAL
Trigger: AAGCGCCGCTCGAGGTGGCGCGCTGCTGCCACGCCAGCGCCGTGGCCGACGGCCGCGTGATCGTGACCGGCG
78% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp GCCACCGCGCAGTGCCAGCCTCGGGGCGTGCTCAGCTaGGGCAGCTCCTGCCACGCGTCGAGCGCGGGGTCG +
Preference number: 6 (lower is better)
Translates to: ATAQCQPRGVLS*GSSCHASSAGS
Trigger: CGACCCCGCGCTCGACGCGTGGCAGGAGCTGCCCCAGCTGAGCACGCCCCGAGGCTGGCACTGCGCGGTGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp GGTAGGCTCGCCCGTGCAGCGCCGAGACACCCGCCGTaGTCACGCCCACGGGCAGCGGCGCCACGAAGCTCC +
Preference number: 6 (lower is better)
Translates to: GRLARAAPRHPP*SRPRAAAPRSS
Trigger: GGAGCTTCGTGGCGCCGCTGCCCGTGGGCGTGAGCACGGCGGGTGTCTCGGCGCTGCACGGGCGAGCCTACC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp GTCACGATCACGCGGCCGTCGGCCACGGCGCTGGCGTaGCAGCAGCGCGCCACCTCGAGCGGCGCTTTGGGC +
Preference number: 6 (lower is better)
Translates to: VTITRPSATALA*QQRATSSGALG
Trigger: GCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCTGCCACGCCAGCGCCGTGGCCGACGGCCGCGTGATCGTGAC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp ATCACGTACAGCCTGTCGCCCAGCGCCACCGCGCAGTaGCAGCCTCGGGGCGTGCTCAGCTGGGGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: ITYSLSPSATAQ*QPRGVLSWGSS
Trigger: GGAGCTGCCCCAGCTGAGCACGCCCCGAGGCTGGCACTGCGCGGTGGCGCTGGGCGACAGGCTGTACGTGAT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp GGCACGGAGGACACCGAGCTGGCCCGTGACTCTCGGGACACGCTGTaGGGCATGGCCAGCGTGCAGCAGGACACGCCCACGGTGGCCTCG +
Preference number: 6 (lower is better)
Translates to: GTEDTELARDSRDTL*GMASVQQDTPTVAS
Trigger: CGAGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCACGGGCCAGCTCGGTGTCCTCCGTGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp CGGGGTCGTAGGCGCACACGGAGCGCGAGTACGCACTaGCGATGTAGCCGCCGGTCACGATCACGCGGCCGT +
Preference number: 6 (lower is better)
Translates to: RGRRRTRSASTH*RCSRRSRSRGR
Trigger: ACGGCCGCGTGATCGTGACCGGCGGCTACATCGGCAGTGCGTACTCGCGCTCCGTGTGCGCCTACGACCCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp TGGGCATGGCCAGCGTGCAGCAGGACACGCCCACGGTaGCCTCGGGCAGCTCGTCGTCCTCCGTCCACTCGT +
Preference number: 6 (lower is better)
Translates to: WAWPACSRTRPR*PRAARRPPSTR
Trigger: ACGAGTGGACGGAGGACGACGAGCTGCCCGAGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp GGCGTGGCAGCAGCGCGCCACCTCGAGCGGCGCTTTGGGCTGCCATaGGTTGGTGGAGGGCACGTAGCACTCCAGCGAAGCCAGGCTGCC +
Preference number: 6 (lower is better)
Translates to: GVAAARHLERRFGLP*VGGGHVALQRSQAA
Trigger: GGCAGCCTGGCTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCTGCCACGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp GTGACTCTCGGGACACGCTGTTGGGCATGGCCAGCGTaGAGCAGGACACGCCCACGGTGGCCTCGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: VTLGTRCWAWPA*SRTRPRWPRAA
Trigger: AGCTGCCCGAGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp AGCTGGCCCGTGACTCTCGGGACACGCTGTTGGGCATaGCCAGCGTGCAGCAGGACACGCCCACGGTGGCCT +
Preference number: 6 (lower is better)
Translates to: SWPVTLGTRCWA*PACSRTRPRWP
Trigger: AGGCCACCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCACGGGCCAGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp ACACCGAGCTGGCCCGTGACTCTCGGGACACGCTGTTaGGCATGGCCAGCGTGCAGCAGGACACGCCCACGG +
Preference number: 6 (lower is better)
Translates to: TPSWPVTLGTRC*AWPACSRTRPR
Trigger: CCGTGGGCGTGTCCTGCTGCACGCTGGCCATGCCCAACAGCGTGTCCCGAGAGTCACGGGCCAGCTCGGTGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp TGGTGGAGGGCACGTAGCACTCCAGCGAAGCCAGGCTaGCCTCGGAGTTACGGCCGCCCACCGCGTACAGCA +
Preference number: 6 (lower is better)
Translates to: WWRARSTPAKPG*PRSYGRPPRTA
Trigger: TGCTGTACGCGGTGGGCGGCCGTAACTCCGAGGGCAGCCTGGCTTCGCTGGAGTGCTACGTGCCCTCCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp GCGCCACCTCGAGCGGCGCTTTGGGCTGCCATTGGTTaGTGGAGGGCACGTAGCACTCCAGCGAAGCCAGGC +
Preference number: 6 (lower is better)
Translates to: APPRAALWAAIG*WRARSTPAKPG
Trigger: GCCTGGCTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp TGGCGTGGCAGCAGCGCGCCACCTCGAGCGGCGCTTTaGGCTGCCATTGGTTGGTGGAGGGCACGTAGCACT +
Preference number: 6 (lower is better)
Translates to: WRGSSAPPRAAL*AAIGWWRARST
Trigger: AGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGCTGCCACGCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp GCAGCGCGCCACCTCGAGCGGCGCTTTGGGCTGCCATaGGTTGGTGGAGGGCACGTAGCACTCCAGCGAAGC +
Preference number: 6 (lower is better)
Translates to: AARHLERRFGLP*VGGGHVALQRS
Trigger: GCTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGGCGCGCTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp CCACCTCGAGCGGCGCTTTGGGCTGCCATTGGTTGGTaGAGGGCACGTAGCACTCCAGCGAAGCCAGGCTGC +
Preference number: 6 (lower is better)
Translates to: PPRAALWAAIGW*RARSTPAKPGC
Trigger: GCAGCCTGGCTTCGCTGGAGTGCTACGTGCCCTCCACCAACCAATGGCAGCCCAAAGCGCCGCTCGAGGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp TCGGAGTTACGGCCGCCCACCGCGTACAGCAGCCCGTaGAACACGCTCAGGCTGAAGTGCGTGCGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: SELRPPTAYSSP*NTLRLKCVRFW
Trigger: CCAGAAGCGCACGCACTTCAGCCTGAGCGTGTTCAACGGGCTGCTGTACGCGGTGGGCGGCCGTAACTCCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp AGGCTGCCCTCGGAGTTACGGCCGCCCACCGCGTACAGCAGCCCGTaGAACACGCTCAGGCTGAAGTGCGTGCGCTTCTGGTTCATGCTG +
Preference number: 6 (lower is better)
Translates to: RLPSELRPPTAYSSP*NTLRLKCVRFWFML
Trigger: CAGCATGAACCAGAAGCGCACGCACTTCAGCCTGAGCGTGTTCAACGGGCTGCTGTACGCGGTGGGCGGCCGTAACTCCGAGGGCAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp GTGGCCTCGGGCAGCTCGTCGTCCTCCGTCCACTCGTaGAGCTCGGGGTTGAAGCACTGGATGCATTTCTTG +
Preference number: 6 (lower is better)
Translates to: VASGSSSSSVHS*SSGLKHWMHFL
Trigger: CAAGAAATGCATCCAGTGCTTCAACCCCGAGCTCAACGAGTGGACGGAGGACGACGAGCTGCCCGAGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp ACGCCCACGGTGGCCTCGGGCAGCTCGTCGTCCTCCGTCCACTCGTaGAGCTCGGGGTTGAAGCACTGGATGCATTTCTTGTACTTCTTC +
Preference number: 6 (lower is better)
Translates to: TPTVASGSSSSSVHS*SSGLKHWMHFLYFF
Trigger: GAAGAAGTACAAGAAATGCATCCAGTGCTTCAACCCCGAGCTCAACGAGTGGACGGAGGACGACGAGCTGCCCGAGGCCACCGTGGGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp GCCTCGGGCAGCTCGTCGTCCTCCGTCCACTCGTTGAGCTCGGGGTaGAAGCACTGGATGCATTTCTTGTACTTCTTCTCGCCCTCGTTC +
Preference number: 6 (lower is better)
Translates to: ASGSSSSSVHSLSSG*KHWMHFLYFFSPSF
Trigger: GAACGAGGGCGAGAAGAAGTACAAGAAATGCATCCAGTGCTTCAACCCCGAGCTCAACGAGTGGACGGAGGACGACGAGCTGCCCGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS TCA 72 bp CTGAAGTGCGTGCGCTTCTGGTTCATGCTGCCCAAGTaGATCCAGGTGTTGAAGCGGGGATCGTACCTGCAG +
Preference number: 6 (lower is better)
Translates to: LKCVRFWFMLPK*IQVLKRGSYLQ
Trigger: CTGCAGGTACGATCCCCGCTTCAACACCTGGATTCACTTGGGCAGCATGAACCAGAAGCGCACGCACTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp TCGTTGAGCTCGGGGTTGAAGCACTGGATGCATTTCTaGTACTTCTTCTCGCCCTCGTTCCAGCCGCCCAGC +
Preference number: 6 (lower is better)
Translates to: SLSSGLKHWMHF*YFFSPSFQPPS
Trigger: GCTGGGCGGCTGGAACGAGGGCGAGAAGAAGTACAAGAAATGCATCCAGTGCTTCAACCCCGAGCTCAACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp TCGTACCTGCAGAAATTGCTGACTGCGTGCTTGGCTTaGTTTCTGGCGTCATTCTGGTCCTCACCACCTGCT +
Preference number: 6 (lower is better)
Translates to: SYLQKLLTACLA*FLASFWSSPPA
Trigger: AGCAGGTGGTGAGGACCAGAATGACGCCAGAAACCAAGCCAAGCACGCAGTCAGCAATTTCTGCAGGTACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp ATCGTACCTGCAGAAATTGCTGACTGCGTGCTTGGCTaGGTTTCTGGCGTCATTCTGGTCCTCACCACCTGC +
Preference number: 6 (lower is better)
Translates to: IVPAEIADCVLG*VSGVILVLTTC
Trigger: GCAGGTGGTGAGGACCAGAATGACGCCAGAAACCAAGCCAAGCACGCAGTCAGCAATTTCTGCAGGTACGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp GAAGCGGGGATCGTACCTGCAGAAATTGCTGACTGCGTGCTTGGCTaGGTTTCTGGCGTCATTCTGGTCCTCACCACCTGCTACATAAAG +
Preference number: 6 (lower is better)
Translates to: EAGIVPAEIADCVLG*VSGVILVLTTCYIK
Trigger: CTTTATGTAGCAGGTGGTGAGGACCAGAATGACGCCAGAAACCAAGCCAAGCACGCAGTCAGCAATTTCTGCAGGTACGATCCCCGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp GGCTTGGTTTCTGGCGTCATTCTGGTCCTCACCACCTaGTACATAAAGGAATCCATCCATCACAGCCACACA +
Preference number: 6 (lower is better)
Translates to: GLVSGVILVLTT*YIKESIHHSHT
Trigger: TGTGTGGCTGTGATGGATGGATTCCTTTATGTAGCAGGTGGTGAGGACCAGAATGACGCCAGAAACCAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp GTGTCTGTTAGTTCGGAAGAAACACAGCTAAGGCTGTaGCTTCCCTCCAGAAGCCCATTTAGAGCATTCAGC +
Preference number: 6 (lower is better)
Translates to: VSVSSEETQLRL*LPSRSPFRAFS
Trigger: GCTGAATGCTCTAAATGGGCTTCTGGAGGGAAGCAACAGCCTTAGCTGTGTTTCTTCCGAACTAACAGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS TCA 72 bp CGTCTTGCATCATCCTCGGTACGGTTTGAACATAATTaGCCAGGTCTTGTGCAGAGATGGTACCAAAGCGAA +
Preference number: 6 (lower is better)
Translates to: RLASSSVRFEHN*PGLVQRWYQSE
Trigger: TTCGCTTTGGTACCATCTCTGCACAAGACCTGGTCAATTATGTTCAAACCGTACCGAGGATGATGCAAGACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp CCAGGTCTTGTGCAGAGATGGTACCAAAGCGAATGTTaGTTAGAAGATCTGCCGCATGCTTCACTCTCTTTT +
Preference number: 6 (lower is better)
Translates to: PGLVQRWYQSEC*LEDLPHASLSF
Trigger: AAAAGAGAGTGAAGCATGCGGCAGATCTTCTAAGCAACATTCGCTTTGGTACCATCTCTGCACAAGACCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp CGGATCAGAAAATCGCTGCACATCTTTACAAGGGTGTaGATCTGGAGGTACACAGCAGCAGAAATGATGCTT +
Preference number: 6 (lower is better)
Translates to: RIRKSLHIFTRV*IWRYTAAEMML
Trigger: AAGCATCATTTCTGCTGCTGTGTACCTCCAGATCCACACCCTTGTAAAGATGTGCAGCGATTTTCTGATCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp ACCAGGTCTTGTGCAGAGATGGTACCAAAGCGAATGTaGCTTAGAAGATCTGCCGCATGCTTCACTCTCTTT +
Preference number: 6 (lower is better)
Translates to: TRSCAEMVPKRM*LRRSAACFTLF
Trigger: AAAGAGAGTGAAGCATGCGGCAGATCTTCTAAGCAACATTCGCTTTGGTACCATCTCTGCACAAGACCTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp TTCAGCTTGCTTAGGGGGCTGTCTTCTACAATGATGGTCATCTCGTaGATCTCTGCCTTGTTCTTCTTGATAGTCTTCTTTTTGGGTGCC +
Preference number: 6 (lower is better)
Translates to: FSLLRGLSSTMMVIS*ISALFFLIVFFLGA
Trigger: GGCACCCAAAAAGAAGACTATCAAGAAGAACAAGGCAGAGATCAACGAGATGACCATCATTGTAGAAGACAGCCCCCTAAGCAAGCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp AAGCAGTTTATGACAATCAGCGTCTTGCATCATCCTCGGTACGGTTaGAACATAATTGACCAGGTCTTGTGCAGAGATGGTACCAAAGCG +
Preference number: 6 (lower is better)
Translates to: KQFMTISVLHHPRYG*NIIDQVLCRDGTKA
Trigger: CGCTTTGGTACCATCTCTGCACAAGACCTGGTCAATTATGTTCAAACCGTACCGAGGATGATGCAAGACGCTGATTGTCATAAACTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp ATGACAATCAGCGTCTTGCATCATCCTCGGTACGGTTaGAACATAATTGACCAGGTCTTGTGCAGAGATGGT +
Preference number: 6 (lower is better)
Translates to: MTISVLHHPRYG*NIIDQVLCRDG
Trigger: ACCATCTCTGCACAAGACCTGGTCAATTATGTTCAAACCGTACCGAGGATGATGCAAGACGCTGATTGTCAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp TACTCGCTGCATGAAGCCATCACTGACTTATGGACATCAAAGGACTaGGTTTTGGTACCGATGACCAAGTCACATAGAAAGCTCTCTTGT +
Preference number: 6 (lower is better)
Translates to: YSLHEAITDLWTSKD*VLVPMTKSHRKLSC
Trigger: ACAAGAGAGCTTTCTATGTGACTTGGTCATCGGTACCAAAACCAAGTCCTTTGATGTCCATAAGTCAGTGATGGCTTCATGCAGCGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp GTGATAGTTCATGGCATCCACAAGCAGTTTATGACAATCAGCGTCTaGCATCATCCTCGGTACGGTTTGAACATAATTGACCAGGTCTTG +
Preference number: 6 (lower is better)
Translates to: VIVHGIHKQFMTISV*HHPRYGLNIIDQVL
Trigger: CAAGACCTGGTCAATTATGTTCAAACCGTACCGAGGATGATGCAAGACGCTGATTGTCATAAACTGCTTGTGGATGCCATGAACTATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp GAAGTTATCCCGGATGAATTTCTGGGCTGTTGCCTTTaGGTTTTTCAAGCTGTAGGTCTCAGCAATGTTAAC +
Preference number: 6 (lower is better)
Translates to: EVIPDEFLGCCL*VFQAVGLSNVN
Trigger: GTTAACATTGCTGAGACCTACAGCTTGAAAAACGCAAAGGCAACAGCCCAGAAATTCATCCGGGATAACTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp TTCGATGAAGTTATCCCGGATGAATTTCTGGGCTGTTaGCTTTGCGTTTTTCAAGCTGTAGGTCTCAGCAAT +
Preference number: 6 (lower is better)
Translates to: FDEVIPDEFLGC*LCVFQAVGLSN
Trigger: ATTGCTGAGACCTACAGCTTGAAAAACGCAAAGGCAACAGCCCAGAAATTCATCCGGGATAACTTCATCGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp AGAAAATCGCTGCACATCTTTACAAGGGTGTGGATCTaGAGGTACACAGCAGCAGAAATGATGCTTCCTATT +
Preference number: 6 (lower is better)
Translates to: RKSLHIFTRVWI*RYTAAEMMLPI
Trigger: AATAGGAAGCATCATTTCTGCTGCTGTGTACCTCCAGATCCACACCCTTGTAAAGATGTGCAGCGATTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp GCCATCACTGACTTATGGACATCAAAGGACTTGGTTTaGGTACCGATGACCAAGTCACATAGAAAGCTCTCT +
Preference number: 6 (lower is better)
Translates to: AITDLWTSKDLV*VPMTKSHRKLS
Trigger: AGAGAGCTTTCTATGTGACTTGGTCATCGGTACCAAAACCAAGTCCTTTGATGTCCATAAGTCAGTGATGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp CATGGCATCCACAAGCAGTTTATGACAATCAGCGTCTaGCATCATCCTCGGTACGGTTTGAACATAATTGAC +
Preference number: 6 (lower is better)
Translates to: HGIHKQFMTISV*HHPRYGLNIID
Trigger: GTCAATTATGTTCAAACCGTACCGAGGATGATGCAAGACGCTGATTGTCATAAACTGCTTGTGGATGCCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp CTGCATGAAGCCATCACTGACTTATGGACATCAAAGGACTTGGTTTaGGTACCGATGACCAAGTCACATAGAAAGCTCTCTTGTCTCATT +
Preference number: 6 (lower is better)
Translates to: LHEAITDLWTSKDLV*VPMTKSHRKLSCLI
Trigger: AATGAGACAAGAGAGCTTTCTATGTGACTTGGTCATCGGTACCAAAACCAAGTCCTTTGATGTCCATAAGTCAGTGATGGCTTCATGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp CATGAAGCCATCACTGACTTATGGACATCAAAGGACTaGGTTTTGGTACCGATGACCAAGTCACATAGAAAG +
Preference number: 6 (lower is better)
Translates to: HEAITDLWTSKD*VLVPMTKSHRK
Trigger: CTTTCTATGTGACTTGGTCATCGGTACCAAAACCAAGTCCTTTGATGTCCATAAGTCAGTGATGGCTTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CCA 72 bp TTGCTTAGAAGATCTGCCGCATGCTTCACTCTCTTTTaGTCGAATTCTAACCATTTCATTGCGATCTGGAAT +
Preference number: 6 (lower is better)
Translates to: LLRRSAACFTLF*SNSNHFIAIWN
Trigger: ATTCCAGATCGCAATGAAATGGTTAGAATTCGACCAAAAGAGAGTGAAGCATGCGGCAGATCTTCTAAGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS TCA 72 bp ACTTATGGACATCAAAGGACTTGGTTTTGGTACCGATaGCCAAGTCACATAGAAAGCTCTCTTGTCTCATTT +
Preference number: 6 (lower is better)
Translates to: TYGHQRTWFWYR*PSHIESSLVSF
Trigger: AAATGAGACAAGAGAGCTTTCTATGTGACTTGGTCATCGGTACCAAAACCAAGTCCTTTGATGTCCATAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS GCA 72 bp CTGTTCAAACGTAAGCTTCATAAATTGTTCGGATTCTaGAAATTCGATGAAGTTATCCCGGATGAATTTCTG +
Preference number: 6 (lower is better)
Translates to: LFKRKLHKLFGF*KFDEVIPDEFL
Trigger: CAGAAATTCATCCGGGATAACTTCATCGAATTTGCAGAATCCGAACAATTTATGAAGCTTACGTTTGAACAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 72 bp AAGCTCGTTAATCTGTTCAAACGTAAGCTTCATAAATaGTTCGGATTCTGCAAATTCGATGAAGTTATCCCG +
Preference number: 6 (lower is better)
Translates to: KLVNLFKRKLHK*FGFCKFDEVIP
Trigger: CGGGATAACTTCATCGAATTTGCAGAATCCGAACAATTTATGAAGCTTACGTTTGAACAGATTAACGAGCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8
CDS CAA 90 bp ATCTACGAGAAGCTCGTTAATCTGTTCAAACGTAAGCTTCATAAATaGTTCGGATTCTGCAAATTCGATGAAGTTATCCCGGATGAATTT +
Preference number: 6 (lower is better)
Translates to: IYEKLVNLFKRKLHK*FGFCKFDEVIPDEF
Trigger: AAATTCATCCGGGATAACTTCATCGAATTTGCAGAATCCGAACAATTTATGAAGCTTACGTTTGAACAGATTAACGAGCTTCTCGTAGAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057781.8