RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLHL29 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020627

Ensembl transcript IDs: ENSMUST00000020958.9, ENSMUST00000218384.2

Found 410 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGACCCTGGCGGCTGCCGACCCTGGCTGCTCTTCCCAGCGACCCCTaGGGCTGCCAGCCCTGGCTCTGCACGTGCAGCTGGCCCTCCATC +
Preference number: 1 (lower is better)
Translates to: RPWRLPTLAALPSDP*GCQPWLCTCSWPSI
Trigger: GATGGAGGGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGAGCAGCCAGGGTCGGCAGCCGCCAGGGTCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp TGGCGGCTGCCGACCCTGGCTGCTCTTCCCAGCGACCCCTGCGGCTaGCAGCCCTGGCTCTGCACGTGCAGCTGGCCCTCCATCCTGTCT +
Preference number: 1 (lower is better)
Translates to: WRLPTLAALPSDPCG*QPWLCTCSWPSILS
Trigger: AGACAGGATGGAGGGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGAGCAGCCAGGGTCGGCAGCCGCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp CTGGCTGCTCTTCCCAGCGACCCCTGCGGCTGCCAGCCCTGGCTCTaGACGTGCAGCTGGCCCTCCATCCTGTCTAGTGGCACCAGGCGC +
Preference number: 1 (lower is better)
Translates to: LAALPSDPCGCQPWL*TCSWPSILSSGTRR
Trigger: GCGCCTGGTGCCACTAGACAGGATGGAGGGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGAGCAGCCAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 90 bp GGGCAGAGCGAGCGCCCTCTGTTCAGAGCAAGTGCCTCGCTGGCCTaGGAGCCCGGGCTCCGTGCATTCCAGGTTCCTGCTGCCCGGAGC +
Preference number: 1 (lower is better)
Translates to: GQSERPLFRASASLA*EPGLRAFQVPAARS
Trigger: GCTCCGGGCAGCAGGAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGAGGGCGCTCGCTCTGCCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 90 bp GCACCGGGCAGAGCGAGCGCCCTCTGTTCAGAGCAAGTGCCTCGCTaGCCTGGGAGCCCGGGCTCCGTGCATTCCAGGTTCCTGCTGCCC +
Preference number: 1 (lower is better)
Translates to: APGRASALCSEQVPR*PGSPGSVHSRFLLP
Trigger: GGGCAGCAGGAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGAGGGCGCTCGCTCTGCCCGGTGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp TGCCTCGCTGGCCTGGGAGCCCGGGCTCCGTGCATTCCAGGTTCCTaGTGCCCGGAGCACTGTGCCCCTCTTCACCCAAAAGGCGAGGAT +
Preference number: 1 (lower is better)
Translates to: CLAGLGARAPCIPGS*CPEHCAPLHPKGED
Trigger: ATCCTCGCCTTTTGGGTGAAGAGGGGCACAGTGCTCCGGGCAGCAGGAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp TCTGTTCAGAGCAAGTGCCTCGCTGGCCTGGGAGCCCGGGCTCCGTaGATTCCAGGTTCCTGCTGCCCGGAGCACTGTGCCCCTCTTCAC +
Preference number: 1 (lower is better)
Translates to: SVQSKCLAGLGARAP*IPGSCCPEHCAPLH
Trigger: GTGAAGAGGGGCACAGTGCTCCGGGCAGCAGGAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp AAACTATTGCACCGGGCAGAGCGAGCGCCCTCTGTTCAGAGCAAGTaGCTCGCTGGCCTGGGAGCCCGGGCTCCGTGCATTCCAGGTTCC +
Preference number: 1 (lower is better)
Translates to: KLLHRAERAPSVQSK*LAGLGARAPCIPGS
Trigger: GGAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGAGGGCGCTCGCTCTGCCCGGTGCAATAGTTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp CCAGCTCATGATACACGGTGCCTGCGGCCTTGCTGTCTGTCCCTCTaGAGAGCCCTCAGGACTACGTTGGAGTCTCCTGCTCCTCCTGAG +
Preference number: 1 (lower is better)
Translates to: PAHDTRCLRPCCLSL*RALRTTLESPAPPE
Trigger: CTCAGGAGGAGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTGTATCATGAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp TTTCTCAGTGCTCCTCCAGCTCATGATACACGGTGCCTGCGGCCTTaGTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTTGGAGTCT +
Preference number: 1 (lower is better)
Translates to: FLSAPPAHDTRCLRP*CLSLCRALRTTLES
Trigger: AGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTGTATCATGAGCTGGAGGAGCACTGAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 90 bp AATGAGAGCAAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTaGGAAGTCCCACAGCGTTGTCCCTCCTGTGGCCTCCTTCTCTCG +
Preference number: 1 (lower is better)
Translates to: NESKGPTSGATYKEL*EVPQRCPSCGLLLS
Trigger: CGAGAGAAGGAGGCCACAGGAGGGACAACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTTGCTCTCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp AGAAGTGATTTCTCAGTGCTCCTCCAGCTCATGATACACGGTGCCTaGGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGT +
Preference number: 1 (lower is better)
Translates to: RSDFSVLLQLMIHGA*GLAVCPSAEPSGLR
Trigger: ACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTGTATCATGAGCTGGAGGAGCACTGAGAAATCACTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 90 bp TGCGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTTaGAGTCTCCTGCTCCTCCTGAGCACAGATTCCCCTATGGTTATT +
Preference number: 1 (lower is better)
Translates to: CGLAVCPSAEPSGLR*SLLLLLSTDSPMVI
Trigger: AATAACCATAGGGGAATCTGTGCTCAGGAGGAGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 90 bp TGTGCACTGTTCTCATCATCTTTGTTAGATCAGACAGCCGTGTCTTaGCAGTCCCCATGGCGGGTCTCCTGCTCCCGTGTGCTCAGCTGT +
Preference number: 1 (lower is better)
Translates to: CALFSSSLLDQTAVS*QSPWRVSCSRVLSC
Trigger: ACAGCTGAGCACACGGGAGCAGGAGACCCGCCATGGGGACTGTCAAGACACGGCTGTCTGATCTAACAAAGATGATGAGAACAGTGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 90 bp GTGAGGTTTGAGGGTCTAAGGACTAAAGGGAAGGCCTTTCTCTTTTaGGCCTCGCTGGGACCTCTCCTGCCTTCCCTTTTCTCAGGTTAC +
Preference number: 1 (lower is better)
Translates to: VRFEGLRTKGKAFLF*ASLGPLLPSLFSGY
Trigger: GTAACCTGAGAAAAGGGAAGGCAGGAGAGGTCCCAGCGAGGCTCAAAAGAGAAAGGCCTTCCCTTTAGTCCTTAGACCCTCAAACCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp AGCCTCGCTGGGACCTCTCCTGCCTTCCCTTTTCTCAGGTTACTATaGAGAAAGGCAACAAGAAGAGTGTTTCTGCTTGTGCCTCTCAGG +
Preference number: 1 (lower is better)
Translates to: SLAGTSPAFPFLRLL*RKATRRVFLLVPLR
Trigger: CCTGAGAGGCACAAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAAGGCAGGAGAGGTCCCAGCGAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 90 bp CATGGCCCACCTCAGGAGAGATCCTCTATTCTGCACATAGAAAAATaGGAGCAAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTG +
Preference number: 1 (lower is better)
Translates to: HGPPQERSSILHIEK*EQGPYLWRYLQRAL
Trigger: CAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTTGCTCTCATTTTTCTATGTGCAGAATAGAGGATCTCTCCTGAGGTGGGCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 90 bp CCTCTGCAGAGCCCTCAGGACTACGTTGGAGTCTCCTGCTCCTCCTaGGCACAGATTCCCCTATGGTTATTCAAAAGCTATGAGGTGTTA +
Preference number: 1 (lower is better)
Translates to: PLQSPQDYVGVSCSS*AQIPLWLFKSYEVL
Trigger: TAACACCTCATAGCTTTTGAATAACCATAGGGGAATCTGTGCTCAGGAGGAGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp TCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTGTaGCTCTCAGGCCGTGACTGTCATGGCTCGTCTAAGAAGGCTGTC +
Preference number: 1 (lower is better)
Translates to: SGYYAERQQEECFCL*LSGRDCHGSSKKAV
Trigger: GACAGCCTTCTTAGACGAGCCATGACAGTCACGGCCTGAGAGGCACAAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp CTAAAGGGAAGGCCTTTCTCTTTTGAGCCTCGCTGGGACCTCTCCTaGCTTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAG +
Preference number: 1 (lower is better)
Translates to: LKGRPFSFEPRWDLS*LPFSQVTMQKGNKK
Trigger: CTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAAGGCAGGAGAGGTCCCAGCGAGGCTCAAAAGAGAAAGGCCTTCCCTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp ACACCAATGCTCACATTCGCCCTGCCCCAGGCAGTTAGAAATTTGTaGTCCAGTCCTTGGGTTCACACTTGCACCCTGTTTGACATAAAT +
Preference number: 1 (lower is better)
Translates to: TPMLTFALPQAVRNL*SSPWVHTCTLFDIN
Trigger: ATTTATGTCAAACAGGGTGCAAGTGTGAACCCAAGGACTGGAGCACAAATTTCTAACTGCCTGGGGCAGGGCGAATGTGAGCATTGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp CTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTaGTTGTGCCTCTCAGGCCGTGACTGTCATGGCTCGTCTAAGAAG +
Preference number: 1 (lower is better)
Translates to: LFSGYYAERQQEECF*LCLSGRDCHGSSKK
Trigger: CTTCTTAGACGAGCCATGACAGTCACGGCCTGAGAGGCACAAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp ACCTCTCCTCTCACCTCCTGTGCTGGTTTTTGCTTATTAAGGTTTTaGTTTCAAGGAGACACTAGGTCTTGGTACGATTTAGGGATGGAG +
Preference number: 1 (lower is better)
Translates to: TSPLTSCAGFCLLRF*FQGDTRSWYDLGME
Trigger: CTCCATCCCTAAATCGTACCAAGACCTAGTGTCTCCTTGAAAGCAAAACCTTAATAAGCAAAAACCAGCACAGGAGGTGAGAGGAGAGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 90 bp ACATTCGCCCTGCCCCAGGCAGTTAGAAATTTGTGCTCCAGTCCTTaGGTTCACACTTGCACCCTGTTTGACATAAATACTTTAAATGAC +
Preference number: 1 (lower is better)
Translates to: TFALPQAVRNLCSSP*VHTCTLFDINTLND
Trigger: GTCATTTAAAGTATTTATGTCAAACAGGGTGCAAGTGTGAACCCAAGGACTGGAGCACAAATTTCTAACTGCCTGGGGCAGGGCGAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 90 bp GCATGTAGTGTCTCTTTCTCTCTGTCAATGGTTCTTGTCATGATGTaGTGGCAAGCTGACTTTCCAGGTAGCAAAATGGTGTGTATTTGG +
Preference number: 1 (lower is better)
Translates to: ACSVSFSLSMVLVMM*WQADFPGSKMVCIW
Trigger: CCAAATACACACCATTTTGCTACCTGGAAAGTCAGCTTGCCATCACATCATGACAAGAACCATTGACAGAGAGAAAGAGACACTACATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 90 bp TTACAGAGAACCCTGTTTTATATCATTCACAGAAATAGCCAGTTTTaGTCCAGTGTGATAGATGAGGAGAGAAACGGAATTTCAGTGTCA +
Preference number: 1 (lower is better)
Translates to: LQRTLFYIIHRNSQF*SSVIDEERNGISVS
Trigger: TGACACTGAAATTCCGTTTCTCTCCTCATCTATCACACTGGAGCAAAACTGGCTATTTCTGTGAATGATATAAAACAGGGTTCTCTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp CTCCCTCAGTCCCTTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAAGTGCCTCGCTGGCCTaGGAGCCCGGGCTCCGTGCA +
Preference number: 2 (lower is better)
Translates to: LPQSLSRGLGRQLYLMEGSASLA*EPGLRA
Trigger: TGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACT...TCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGGACTGAGGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp TTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAGCTGGACTGTTGTAGCGACCCCTGCGGCTaGCAGCCCTGGCTCTGCACG +
Preference number: 2 (lower is better)
Translates to: FPGAWVVSFTSWRELDCCSDPCG*QPWLCT
Trigger: CGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCT...ACAACAGTCCAGCTCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR TCA 90 bp CACGGTGCCTGCGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTCTGCACATAGAAAAATaGGAGCAAGGGCCCTACCTC +
Preference number: 2 (lower is better)
Translates to: HGACGLAVCPSAEPSGLRLHIEK*EQGPYL
Trigger: GAGGTAGGGCCCTTGCTCTCATTTTTCTATGTGCAG...ACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 90 bp CTGCGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTaGGAGTCTCCTGCTCCTCCTGAGCACAGATTCCCCTATGGTTAT +
Preference number: 2 (lower is better)
Translates to: LRPCCLSLCRALRTT*ESPAPPEHRFPYGY
Trigger: ATAACCATAGGGGAATCTGTGCTCAGGAGGAGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 90 bp GTGTGCACTGTTCTCATCATCTTTGTTAGATCAGACAGCCGTGTCTaGACAGTCCCCATGGCGGGTCTCCTGCTCCCGTGTGCTCAGCTG +
Preference number: 2 (lower is better)
Translates to: VCTVLIIFVRSDSRV*TVPMAGLLLPCAQL
Trigger: CAGCTGAGCACACGGGAGCAGGAGACCCGCCATGGGGACTGTCAAGACACGGCTGTCTGATCTAACAAAGATGATGAGAACAGTGCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp CACGGTGCCTGCGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTCCTTGGGTTCACACTTaGACCCTGTTTGACATAAAT +
Preference number: 2 (lower is better)
Translates to: HGACGLAVCPSAEPSGLRPWVHT*TLFDIN
Trigger: ATTTATGTCAAACAGGGTGCAAGTGTGAACCCAAGG...ACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGCGCTCTCCGAGGCCTTaGTGCTGCACAGTTCCATTC +
Preference number: 2 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLRSPRP*CCTVPF
Trigger: GAATGGAACTGTGCAGCACCAAGGCCTCGGAGAGCG...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp GAGAATGGTCCTCTTGTCCCAAGGGTTTCAACAGAGTTTCCAGTAGAACCTCTCCCCTTTCCCGGGGCCTaGGTCGTCAGCTTTACCTCA +
Preference number: 2 (lower is better)
Translates to: ENGPLVPRVSTEFPVEPLPFPGA*VVSFTS
Trigger: TGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGG...GAGAGGTTCTACTGGAAACTCTGTTGAAACCCTTGGGACAAGAGGACCATTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR TCA 90 bp GGCTCGTCTAAGAAGGCTGTCCCCATCCTGAGAGCTCTCATGGCAGGTGCCTTGGAAATGTTAGCGCAGTaGGTTTCTCGATTGTGTTTT +
Preference number: 2 (lower is better)
Translates to: GSSKKAVPILRALMAGALEMLAQ*VSRLCF
Trigger: AAAACACAATCGAGAAACTCACTGCGCTAACATTTC...CAAGGCACCTGCCATGAGAGCTCTCAGGATGGGGACAGCCTTCTTAGACGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp TTAGGTATAAAACACAGAGATTCTTCATGGACCACAAGAACATGTTCCTTCACTTGCGGCTGCCAGCCCTaGCTCTGCACGTGCAGCTGG +
Preference number: 2 (lower is better)
Translates to: LGIKHRDSSWTTRTCSFTCGCQP*LCTCSW
Trigger: CCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCA...AGTGAAGGAACATGTTCTTGTGGTCCATGAAGAATCTCTGTGTTTTATACCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 90 bp TTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTaGTGCCTCTCAGGCCGTGACTGTCATGGCTCGTCTAAGAAGGCT +
Preference number: 2 (lower is better)
Translates to: FSGYYAERQQEECFC*CLSGRDCHGSSKKA
Trigger: AGCCTTCTTAGACGAGCCATGACAGTCACGGCCTGAGAGGCACAAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp GGGTCCTCTCTAATCATCCAAACCTACATCTGTAGAAGGATACACACTCTTGATTGCCTCCACATGGCATaGTCTTCCAGGACTGTCTGG +
Preference number: 2 (lower is better)
Translates to: GSSLIIQTYICRRIHTLDCLHMA*SSRTVW
Trigger: CCAGACAGTCCTGGAAGACCATGCCATGTGGAGGCA...ATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGAGAGGACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 90 bp CTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCTTCACGATaGGCTTCTTCTAGACAGTCTGTGTCCACCCTTGTAGGACAGTTG +
Preference number: 2 (lower is better)
Translates to: LADCFYHRLSPSPSR*ASSRQSVSTLVGQL
Trigger: CAACTGTCCTACAAGGGTGGACACAGACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR TCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGTGGGTCATCCAATACTaGATGATGAAAGCATGTAGT +
Preference number: 2 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLWVIQY*MMKACS
Trigger: ACTACATGCTTTCATCATTCAGTATTGGATGACCCA...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR TCA 90 bp GAGAATGGTCCTCTTGTCCCAAGGGTTTCAACAGAGTTTCCAGTAGAACCTCTCGGCTTTTACATGCTGTaGGAAGAAGAACATAGGAGC +
Preference number: 2 (lower is better)
Translates to: ENGPLVPRVSTEFPVEPLGFYML*EEEHRS
Trigger: GCTCCTATGTTCTTCTTCTCACAGCATGTAAAAGCC...GAGAGGTTCTACTGGAAACTCTGTTGAAACCCTTGGGACAAGAGGACCATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp GTTTTTATCACAGATTATCACCTTCCCCTTCACGATTGGCTTCTTCTAGACAGTCGGCGGCCTTCTTCCTaGCCTGGAATGGAAACTGAT +
Preference number: 2 (lower is better)
Translates to: VFITDYHLPLHDWLLLDSRRPSS*PGMETD
Trigger: ATCAGTTTCCATTCCAGGGCAGGAAGAAGGCCGCCG...ACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTTGGCATTCGCCTCACTaGACTTGTCCCATAGACTTG +
Preference number: 2 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVWHSPH*TCPIDL
Trigger: CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCA...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR-3UTR CCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGACAAAGACATTGCATTaGCTTCCGAGTCTAGATCTA +
Preference number: 2 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLTKTLH*LPSLDL
Trigger: TAGATCTAGACTCGGAAGCCAATGCAATGTCTTTGT...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR TCA 90 bp GGGTCCTCTCTAATCATCCAAACCTACATCTGTAGAAGGATACACACTCTTGATGCCTCTCGTTGGCGTTaGAAGATAACCATGTTGTGT +
Preference number: 2 (lower is better)
Translates to: GSSLIIQTYICRRIHTLDASRWR*KITMLC
Trigger: ACACAACATGGTTATCTTTCAACGCCAACGAGAGGC...ATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGAGAGGACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp GAGAATGGTCCTCTTGTCCCAAGGGTTTCAACAGAGTTTCCAGTAGAACCTCTCAGGATAACTGATCTATaGTGGTTTAGGGATCAAGCT +
Preference number: 2 (lower is better)
Translates to: ENGPLVPRVSTEFPVEPLRITDL*WFRDQA
Trigger: AGCTTGATCCCTAAACCACCATAGATCAGTTATCCT...GAGAGGTTCTACTGGAAACTCTGTTGAAACCCTTGGGACAAGAGGACCATTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp AAAGCAAGCTGTGGGGCTTTTACATGCTGTGAGAAGAAGAACATAGGAGCTCAGTCTTCCAGGACTGTCTaGGAGTTAACTTTTTCCAAA +
Preference number: 2 (lower is better)
Translates to: KASCGAFTCCEKKNIGAQSSRTV*ELTFSK
Trigger: TTTGGAAAAAGTTAACTCCCAGACAGTCCTGGAAGA...CTGAGCTCCTATGTTCTTCTTCTCACAGCATGTAAAAGCCCCACAGCTTGCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp TTAGGTATAAAACACAGAGATTCTTCATGGACCACAAGAACATGTTCCTTCACTTGGCATTCGCCTCACTaGACTTGTCCCATAGACTTG +
Preference number: 2 (lower is better)
Translates to: LGIKHRDSSWTTRTCSFTWHSPH*TCPIDL
Trigger: CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCA...AGTGAAGGAACATGTTCTTGTGGTCCATGAAGAATCTCTGTGTTTTATACCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp GGGTCCTCTCTAATCATCCAAACCTACATCTGTAGAAGGATACACACTCTTGATCCCACCATGTTCTTTTaGAGCAAAAACATGGTAGAA +
Preference number: 2 (lower is better)
Translates to: GSSLIIQTYICRRIHTLDPTMFF*SKNMVE
Trigger: TTCTACCATGTTTTTGCTGCAAAAGAACATGGTGGG...ATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGAGAGGACCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CCA 90 bp TTAGGTATAAAACACAGAGATTCTTCATGGACCACAAGAACATGTTCCTTCACTACCTACAAAGAGCTTTaGGAAGTCCCACAGCGTTGT +
Preference number: 2 (lower is better)
Translates to: LGIKHRDSSWTTRTCSFTTYKEL*EVPQRC
Trigger: ACAACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGT...AGTGAAGGAACATGTTCTTGTGGTCCATGAAGAATCTCTGTGTTTTATACCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCTTCCTTCCTGACAGATaGATTTCCGTATTTCATGCT +
Preference number: 2 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPFLPDR*ISVFHA
Trigger: AGCATGAAATACGGAAATGCATCTGTCAGGAAGGAA...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp TTAGGTATAAAACACAGAGATTCTTCATGGACCACAAGAACATGTTCCTTCACTTTTCTCAGGTTACTATaGAGAAAGGCAACAAGAAGA +
Preference number: 2 (lower is better)
Translates to: LGIKHRDSSWTTRTCSFTFLRLL*RKATRR
Trigger: TCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAA...AGTGAAGGAACATGTTCTTGTGGTCCATGAAGAATCTCTGTGTTTTATACCTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR GCA 90 bp CTATTTTCTTTAATGAAGATACTGTTTATCACACAGGAGGTACTTCCCCTGATTTCTATGCACACAGTGTaGACTGTTCTCATCATCTTT +
Preference number: 2 (lower is better)
Translates to: LFSLMKILFITQEVLPLISMHTV*TVLIIF
Trigger: AAAGATGATGAGAACAGTGCACACTGTGTGCATAGA...AATCAGGGGAAGTACCTCCTGTGTGATAAACAGTATCTTCATTAAAGAAAATAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CGGCTGCCGACCCTGGCTGCTCTTCCCAGCGACCCCTaGGGCTGCCAGCCCTGGCTCTGCACGTGCAGCTGG +
Preference number: 3 (lower is better)
Translates to: RLPTLAALPSDP*GCQPWLCTCSW
Trigger: CCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGAGCAGCCAGGGTCGGCAGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CTCTTCCCAGCGACCCTGGCGGCTGCCGACCCTGGCTaGTCTTCCCAGCGACCCCTGCGGCTGCCAGCCCTG +
Preference number: 3 (lower is better)
Translates to: LFPATLAAADPG*SSQRPLRLPAL
Trigger: CAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGAGCAGCCAGGGTCGGCAGCCGCCAGGGTCGCTGGGAAGAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CACCGGGCAGAGCGAGCGCCCTCTGTTCAGAGCAAGTaGCTCGCTGGCCTGGGAGCCCGGGCTCCGTGCATT +
Preference number: 3 (lower is better)
Translates to: HRAERAPSVQSK*LAGLGARAPCI
Trigger: AATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGAGGGCGCTCGCTCTGCCCGGTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CTTCCCAGCGACCCCTGCGGCTGCCAGCCCTGGCTCTaGACGTGCAGCTGGCCCTCCATCCTGTCTAGTGGC +
Preference number: 3 (lower is better)
Translates to: LPSDPCGCQPWL*TCSWPSILSSG
Trigger: GCCACTAGACAGGATGGAGGGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CTGGGAGCCCGGGCTCCGTGCATTCCAGGTTCCTGCTaGCCGGAGCACTGTGCCCCTCTTCACCCAAAAGGC +
Preference number: 3 (lower is better)
Translates to: LGARAPCIPGSC*PEHCAPLHPKG
Trigger: GCCTTTTGGGTGAAGAGGGGCACAGTGCTCCGGGCAGCAGGAACCTGGAATGCACGGAGCCCGGGCTCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp GAGCGCCCTCTGTTCAGAGCAAGTGCCTCGCTGGCCTaGGAGCCCGGGCTCCGTGCATTCCAGGTTCCTGCT +
Preference number: 3 (lower is better)
Translates to: ERPLFRASASLA*EPGLRAFQVPA
Trigger: AGCAGGAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGAGGGCGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp AGAGCGAGCGCCCTCTGTTCAGAGCAAGTGCCTCGCTaGCCTGGGAGCCCGGGCTCCGTGCATTCCAGGTTC +
Preference number: 3 (lower is better)
Translates to: RASALCSEQVPR*PGSPGSVHSRF
Trigger: GAACCTGGAATGCACGGAGCCCGGGCTCCCAGGCCAGCGAGGCACTTGCTCTGAACAGAGGGCGCTCGCTCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp GCTCCTCCAGCTCATGATACACGGTGCCTGCGGCCTTaGTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACG +
Preference number: 3 (lower is better)
Translates to: APPAHDTRCLRP*CLSLCRALRTT
Trigger: CGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTGTATCATGAGCTGGAGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp GATACACGGTGCCTGCGGCCTTGCTGTCTGTCCCTCTaGAGAGCCCTCAGGACTACGTTGGAGTCTCCTGCT +
Preference number: 3 (lower is better)
Translates to: DTRCLRPCCLSL*RALRTTLESPA
Trigger: AGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTGTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CTGTCTAGTGGCACCAGGCGCTCTCCGAGGCCTTGGTaGTGCACAGTTCCATTCCTCCTTTTTCTCTCGGCC +
Preference number: 3 (lower is better)
Translates to: LSSGTRRSPRPW*CTVPFLLFLSA
Trigger: GGCCGAGAGAAAAAGGAGGAATGGAACTGTGCAGCACCAAGGCCTCGGAGAGCGCCTGGTGCCACTAGACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp AAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTaGGAAGTCCCACAGCGTTGTCCCTCCTGTGGCCTC +
Preference number: 3 (lower is better)
Translates to: KGPTSGATYKEL*EVPQRCPSCGL
Trigger: GAGGCCACAGGAGGGACAACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp GCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTTaGAGTCTCCTGCTCCTCCTGAGCACAGATTCCCCT +
Preference number: 3 (lower is better)
Translates to: AVCPSAEPSGLR*SLLLLLSTDSP
Trigger: AGGGGAATCTGTGCTCAGGAGGAGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp ATCCTGTCTAGTGGCACCAGGCGCTCTCCGAGGCCTTaGTGCTGCACAGTTCCATTCCTCCTTTTTCTCTCG +
Preference number: 3 (lower is better)
Translates to: ILSSGTRRSPRP*CCTVPFLLFLS
Trigger: CGAGAGAAAAAGGAGGAATGGAACTGTGCAGCACCAAGGCCTCGGAGAGCGCCTGGTGCCACTAGACAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CAA 90 bp TTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAGCTGGACTGTTGTAAATATGTGAAACTATaGCACCGGGCAGAGCGAGCG +
Preference number: 3 (lower is better)
Translates to: FPGAWVVSFTSWRELDCCKYVKL*HRAERA
Trigger: CGCTCGCTCTGCCCGGTGCAATAGTTTCACATATTT...ACAACAGTCCAGCTCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CAA 90 bp GGCTCGTCTAAGAAGGCTGTCCCCATCCTGAGAGCTCTCATGGCAGGTGCCTTGTACCTACAAAGAGCTTaGGGAAGTCCCACAGCGTTG +
Preference number: 3 (lower is better)
Translates to: GSSKKAVPILRALMAGALYLQRA*GSPTAL
Trigger: CAACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTA...CAAGGCACCTGCCATGAGAGCTCTCAGGATGGGGACAGCCTTCTTAGACGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 72 bp GAGGGTCTAAGGACTAAAGGGAAGGCCTTTCTCTTTTaGGCCTCGCTGGGACCTCTCCTGCCTTCCCTTTTC +
Preference number: 3 (lower is better)
Translates to: EGLRTKGKAFLF*ASLGPLLPSLF
Trigger: GAAAAGGGAAGGCAGGAGAGGTCCCAGCGAGGCTCAAAAGAGAAAGGCCTTCCCTTTAGTCCTTAGACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 72 bp TTCTCATCATCTTTGTTAGATCAGACAGCCGTGTCTTaGCAGTCCCCATGGCGGGTCTCCTGCTCCCGTGTG +
Preference number: 3 (lower is better)
Translates to: FSSSLLDQTAVS*QSPWRVSCSRV
Trigger: CACACGGGAGCAGGAGACCCGCCATGGGGACTGTCAAGACACGGCTGTCTGATCTAACAAAGATGATGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CTCACATTCGCCCTGCCCCAGGCAGTTAGAAATTTGTaGTCCAGTCCTTGGGTTCACACTTGCACCCTGTTT +
Preference number: 3 (lower is better)
Translates to: LTFALPQAVRNL*SSPWVHTCTLF
Trigger: AAACAGGGTGCAAGTGTGAACCCAAGGACTGGAGCACAAATTTCTAACTGCCTGGGGCAGGGCGAATGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp GGACTAAAGGGAAGGCCTTTCTCTTTTGAGCCTCGCTaGGACCTCTCCTGCCTTCCCTTTTCTCAGGTTACT +
Preference number: 3 (lower is better)
Translates to: GLKGRPFSFEPR*DLSCLPFSQVT
Trigger: AGTAACCTGAGAAAAGGGAAGGCAGGAGAGGTCCCAGCGAGGCTCAAAAGAGAAAGGCCTTCCCTTTAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp GACAGATGCATTTCCGTATTTCATGCTAAGCAGTCTTaGCTAGGTGTCCTGGGCATGGCAAAGCGGGTCTGT +
Preference number: 3 (lower is better)
Translates to: DRCISVFHAKQS*LGVLGMAKRVC
Trigger: ACAGACCCGCTTTGCCATGCCCAGGACACCTAGGCAAGACTGCTTAGCATGAAATACGGAAATGCATCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp GGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTaGCATTCGCCTCACTGGACTTGTCCCATAGACTTG +
Preference number: 3 (lower is better)
Translates to: GLSLALKDNHVV*HSPHWTCPIDL
Trigger: CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR-3UTR CAA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGTTTGTGGGCCTCTCGTaGGCGTTGAAAGATAACCAT +
Preference number: 3 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLFVGLS*ALKDNH
Trigger: ATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAA...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CAA 90 bp AAAGCAAGCTGTGGGGCTTTTACATGCTGTGAGAAGAAGAACATAGGAGCTCAGCCACTAACACCTCCCTaGGAGGCAGACACACACCAA +
Preference number: 3 (lower is better)
Translates to: KASCGAFTCCEKKNIGAQPLTPP*EADTHQ
Trigger: TTGGTGTGTGTCTGCCTCCAAGGGAGGTGTTAGTGG...CTGAGCTCCTATGTTCTTCTTCTCACAGCATGTAAAAGCCCCACAGCTTGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 72 bp TCCACCCTTGTAGGACAGTTGTTCCTAGGAAAGTACTaGTTTGACAGGAGAATGGTCCTCTTGTCCCAAGGG +
Preference number: 3 (lower is better)
Translates to: STLVGQLFLGKY*FDRRMVLLSQG
Trigger: CCCTTGGGACAAGAGGACCATTCTCCTGTCAAATCAGTACTTTCCTAGGAACAACTGTCCTACAAGGGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CCTTTAGACACAACTGAGGAAGCAGGAAGGCTACCCTaGCTGGGTCTCAGCATGGAAATCACTGATTTTCTT +
Preference number: 3 (lower is better)
Translates to: PLDTTEEAGRLP*LGLSMEITDFL
Trigger: AAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTGCTTCCTCAGTTGTGTCTAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CAA 90 bp CCAGAGTTCATGTCATTTCTTTATGGCTGTCTAGAAGTGATTTCTCAGTGCTCCGAGGGAGCTGGACTGTaGTCAGAAGCCAGAACCATG +
Preference number: 3 (lower is better)
Translates to: PEFMSFLYGCLEVISQCSEGAGL*SEARTM
Trigger: CATGGTTCTGGCTTCTGACAACAGTCCAGCTCCCTC...GGAGCACTGAGAAATCACTTCTAGACAGCCATAAAGAAATGACATGAACTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 72 bp TTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTaGAAGATAACCATGTTGTGTGGCATTCGCCTCACT +
Preference number: 3 (lower is better)
Translates to: FLDCVLWASRWR*KITMLCGIRLT
Trigger: AGTGAGGCGAATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CCA 72 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTaGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGC +
Preference number: 3 (lower is better)
Translates to: LKDNHVVWHSPH*TCPIDLSWAFC
Trigger: GCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CCA 72 bp CGTGATGCCCCAAATTGTCACAGGATAACTGATCTATaGTGGTTTAGGGATCAAGCTTGCTCTGCAAGAAGG +
Preference number: 3 (lower is better)
Translates to: RDAPNCHRITDL*WFRDQACSARR
Trigger: CCTTCTTGCAGAGCAAGCTTGATCCCTAAACCACCATAGATCAGTTATCCTGTGACAATTTGGGGCATCACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp CTGCCCCAGGCAGTTAGAAATTTGTGCTCCAGTCCTTaGGTTCACACTTGCACCCTGTTTGACATAAATACT +
Preference number: 3 (lower is better)
Translates to: LPQAVRNLCSSP*VHTCTLFDINT
Trigger: AGTATTTATGTCAAACAGGGTGCAAGTGTGAACCCAAGGACTGGAGCACAAATTTCTAACTGCCTGGGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 72 bp CCTTGTAGGACAGTTGTTCCTAGGAAAGTACTGATTTaGCAGGAGAATGGTCCTCTTGTCCCAAGGGTTTCA +
Preference number: 3 (lower is better)
Translates to: PCRTVVPRKVLI*QENGPLVPRVS
Trigger: TGAAACCCTTGGGACAAGAGGACCATTCTCCTGTCAAATCAGTACTTTCCTAGGAACAACTGTCCTACAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR TCA 72 bp GTCTCTTTCTCTCTGTCAATGGTTCTTGTCATGATGTaGTGGCAAGCTGACTTTCCAGGTAGCAAAATGGTG +
Preference number: 3 (lower is better)
Translates to: VSFSLSMVLVMM*WQADFPGSKMV
Trigger: CACCATTTTGCTACCTGGAAAGTCAGCTTGCCATCACATCATGACAAGAACCATTGACAGAGAGAAAGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp TTACTGGAGGTTACCGTTCATCTGTCTCTGTCCCTTTaGAAAAGGGTCCTCTCTAATCATCCAAACCTACAT +
Preference number: 3 (lower is better)
Translates to: LLEVTVHLSLSL*KRVLSNHPNLH
Trigger: ATGTAGGTTTGGATGATTAGAGAGGACCCTTTTGCAAAGGGACAGAGACAGATGAACGGTAACCTCCAGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CCA 72 bp GATGCCCCAAATTGTCACAGGATAACTGATCTATGGTaGTTTAGGGATCAAGCTTGCTCTGCAAGAAGGAAA +
Preference number: 3 (lower is better)
Translates to: DAPNCHRITDLW*FRDQACSARRK
Trigger: TTTCCTTCTTGCAGAGCAAGCTTGATCCCTAAACCACCATAGATCAGTTATCCTGTGACAATTTGGGGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CAA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCAGGAGAATGGTCCTCTaGTCCCAAGGGTTTCAACAG +
Preference number: 3 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPRRMVL*SQGFQQ
Trigger: CTGTTGAAACCCTTGGGACAAGAGGACCATTCTCCT...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp ATCTACCCTTTCTTCCTAAACTTCCTTCCTGACAGATaGATTTCCGTATTTCATGCTAAGCAGTCTTGCCTA +
Preference number: 3 (lower is better)
Translates to: IYPFFLNFLPDR*ISVFHAKQSCL
Trigger: TAGGCAAGACTGCTTAGCATGAAATACGGAAATGCATCTGTCAGGAAGGAAGTTTAGGAAGAAAGGGTAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp CTCACCTCCTGTGCTGGTTTTTGCTTATTAAGGTTTTaGTTTCAAGGAGACACTAGGTCTTGGTACGATTTA +
Preference number: 3 (lower is better)
Translates to: LTSCAGFCLLRF*FQGDTRSWYDL
Trigger: TAAATCGTACCAAGACCTAGTGTCTCCTTGAAAGCAAAACCTTAATAAGCAAAAACCAGCACAGGAGGTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR-3UTR CAA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTGTGGGCCTCTCGTaGGCGTTGAAAGATAACCAT +
Preference number: 3 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVFVGLS*ALKDNH
Trigger: ATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAA...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR-3UTR CAA 90 bp GTTTTTATCACAGATTATCACCTTCCCCTTCACGATTGGCTTCTTCTAGACAGTAGTGATAAGGACACTTaGACCTTATTCCAAAAGAGC +
Preference number: 3 (lower is better)
Translates to: VFITDYHLPLHDWLLLDSSDKDT*TLFQKS
Trigger: GCTCTTTTGGAATAAGGTCAAAGTGTCCTTATCACT...ACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp ACCCTGTTTTATATCATTCACAGAAATAGCCAGTTTTaGTCCAGTGTGATAGATGAGGAGAGAAACGGAATT +
Preference number: 3 (lower is better)
Translates to: TLFYIIHRNSQF*SSVIDEERNGI
Trigger: AATTCCGTTTCTCTCCTCATCTATCACACTGGAGCAAAACTGGCTATTTCTGTGAATGATATAAAACAGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR GCA 72 bp GTTAGAAATTTGTGCTCCAGTCCTTGGGTTCACACTTaGACCCTGTTTGACATAAATACTTTAAATGACATA +
Preference number: 3 (lower is better)
Translates to: VRNLCSSPWVHT*TLFDINTLNDI
Trigger: TATGTCATTTAAAGTATTTATGTCAAACAGGGTGCAAGTGTGAACCCAAGGACTGGAGCACAAATTTCTAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp TCTTCCCAGCGACCCCTGCGGCTGCCAGCCCTGGCTCTGCACGTGCAGCTGGCCGGTGCCCTGGGTCGGTaGACTCATACTTCCCCACTC +
Preference number: 4 (lower is better)
Translates to: SSQRPLRLPALALHVQLAGALGR*THTSPL
Trigger: GAGTGGGGAAGTATGAGTTCACCGACCCAGGGCACC...GGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp CTCCCTCAGTCCCTTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAGGCCCGGTCTTGCGCTaGGACTGCTGGCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: LPQSLSRGLGRQLYLMEGGPVLR*DCWLCC
Trigger: GCAGCACAGCCAGCAGTCTCAGCGCAAGACCGGGCC...TCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGGACTGAGGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp CTCCCTCAGTCCCTTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGACACTGCTGCCGGTCGTaGAGGGAGCAGGAGCCGTGG +
Preference number: 4 (lower is better)
Translates to: LPQSLSRGLGRQLYLMEGHCCRS*REQEPW
Trigger: CCACGGCTCCTGCTCCCTGCACGACCGGCAGCAGTG...TCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGGACTGAGGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp TCTTCCCAGCGACCCCTGCGGCTGCCAGCCCTGGCTCTGCACGTGCAGCTGGCCACAGGACAGGGCATGTaGGGTAAGAGGGTCCATGTG +
Preference number: 4 (lower is better)
Translates to: SSQRPLRLPALALHVQLATGQGM*GKRVHV
Trigger: CACATGGACCCTCTTACCCCACATGCCCTGTCCTGT...GGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp TTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAGCTGGACTGTTGTAGGCAGCAGGGGCCCTaGCATGTGGCCGTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: FPGAWVVSFTSWRELDCCRQQGP*HVAVAH
Trigger: GTGGGCAACGGCCACATGGCAGGGCCCCTGCTGCCT...ACAACAGTCCAGCTCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp CACGGTGCCTGCGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTCCAACTTCTCCCGGCTaGTCTGGCTGCTGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: HGACGLAVCPSAEPSGLRPTSPG*SGCCPA
Trigger: TGCAGGACAGCAGCCAGAGCAGCCGGGAGAAGTTGG...ACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp AACTATTGCACCGGGCAGAGCGAGCGCCCTCTGTTCAGAGCAAGTGCCTCGCTGCTGAGGATCTCCTCCTaGGCGGCCACCTCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: NYCTGQSERPLFRASASLLRISS*AATSGK
Trigger: CTTCCCCGAGGTGGCCGCCCAGGAGGAGATCCTCAG...CAGCGAGGCACTTGCTCTGAACAGAGGGCGCTCGCTCTGCCCGGTGCAATAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp CAGGCGGCTCTTCCCAGCGACCCTGGCGGCTGCCGACCCTGGCTGCTCTTCCCATCCATGTGTTGGTTGTaGGCTCGTAGGCTTCCATGT +
Preference number: 4 (lower is better)
Translates to: QAALPSDPGGCRPWLLFPSMCWL*ARRLPC
Trigger: ACATGGAAGCCTACGAGCCCACAACCAACACATGGA...TGGGAAGAGCAGCCAGGGTCGGCAGCCGCCAGGGTCGCTGGGAAGAGCCGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp CACGGTGCCTGCGGCCTTGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTCAGAACTGCCGAGAGTaGTTCATGTTTGGCCCCGCC +
Preference number: 4 (lower is better)
Translates to: HGACGLAVCPSAEPSGLRQNCRE*FMFGPA
Trigger: GGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTG...ACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCAAGGCCGCAGGCACCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp AAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTGGGAAGTCCCACAGCGTCGGGTTCGGGGTGTCTaGATCTCCTGCCGGGCGTGG +
Preference number: 4 (lower is better)
Translates to: KGPTSGATYKELWEVPQRRVRGV*ISCRAW
Trigger: CCACGCCCGGCAGGAGATGCAGACACCCCGAACCCG...ACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp TTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAGCTGGACTGTTGTCCACATGGTCCACGTTaGCGGCCACTCCAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: FPGAWVVSFTSWRELDCCPHGPR*RPLQVP
Trigger: GGGGACTTGGAGTGGCCGGCAACGTGGACCATGTGG...ACAACAGTCCAGCTCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp GTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGCTGAGGCAGCAGGGGCCCTaGCATGTGGCCGTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: VAFASLDLSHRLVLGFLLRQQGP*HVAVAH
Trigger: GTGGGCAACGGCCACATGGCAGGGCCCCTGCTGCCT...CAGCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGAGGGAGCAGGAGCCGTaGCGGGTGTGGGCAGCCGGG +
Preference number: 4 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWREQEP*RVWAAG
Trigger: CCCGGCTGCCCACACCCGCCACGGCTCCTGCTCCCT...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CAA 72 bp CAAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTaGGGAAGTCCCACAGCGTTGTCCCTCCTGTGGCCT +
Preference number: 4 (lower is better)
Translates to: QGPYLWRYLQRA*GSPTALSLLWP
Trigger: AGGCCACAGGAGGGACAACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 72 bp TGCTGTCTGTCCCTCTGCAGAGCCCTCAGGACTACGTaGGAGTCTCCTGCTCCTCCTGAGCACAGATTCCCC +
Preference number: 4 (lower is better)
Translates to: CCLSLCRALRTT*ESPAPPEHRFP
Trigger: GGGGAATCTGTGCTCAGGAGGAGCAGGAGACTCCAACGTAGTCCTGAGGGCTCTGCAGAGGGACAGACAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp AAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTGGGAAGTCCCACAGCGTCACCGTGGTCACCCATaGCCCTGTGCCTGGATTGTC +
Preference number: 4 (lower is better)
Translates to: KGPTSGATYKELWEVPQRHRGHP*PCAWIV
Trigger: GACAATCCAGGCACAGGGCCATGGGTGACCACGGTG...ACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp GTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGCTGTTCCAGCGGCCACCGTaGTCACCCATGGCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: VAFASLDLSHRLVLGFLLFQRPP*SPMALC
Trigger: GCACAGGGCCATGGGTGACCACGGTGGCCGCTGGAA...CAGCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CTCCCTCAGTCCCTTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAAGAGGGTCCATGTGTTaGTTGTGGGCTCGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: LPQSLSRGLGRQLYLMEGRGSMC*LWARRL
Trigger: AAGCCTACGAGCCCACAACCAACACATGGACCCTCT...TCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGGACTGAGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGGCCCGGTCTTGCGCTaGGACTGCTGGCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWGPVLR*DCWLCC
Trigger: GCAGCACAGCCAGCAGTCTCAGCGCAAGACCGGGCC...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCAGGGAGTCACCCCGATaGCGGGGGCCTGGACGTTCA +
Preference number: 4 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFRESPR*RGPGRS
Trigger: TGAACGTCCAGGCCCCCGTCATCGGGGTGACTCCCT...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGCTGACCTCGGGGAAGATCTaGAGCGCGAAGGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: VAFASLDLSHRLVLGFLLTSGKI*SAKALA
Trigger: GGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGT...CAGCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAACGTTGCCCACAGGGGTaGGTCCCGGGCGGGATACCT +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVERCPQG*VPGGIP
Trigger: AGGTATCCCGCCCGGGACCCACCCCTGTGGGCAACG...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCACTGCTGCCGGTCGTaGAGGGAGCAGGAGCCGTGG +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWHCCRS*REQEPW
Trigger: CCACGGCTCCTGCTCCCTGCACGACCGGCAGCAGTG...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTCTGCCATGTGGCCGTTaGCCACAGGGGTGGGTCCCG +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSLPCGR*PQGWVP
Trigger: CGGGACCCACCCCTGTGGGCAACGGCCACATGGCAG...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp CTCCCTCAGTCCCTTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAAACATTTCTTTAGGGTaGCCTGGGTCGGTGAACTCA +
Preference number: 4 (lower is better)
Translates to: LPQSLSRGLGRQLYLMEGNISLG*PGSVNS
Trigger: TGAGTTCACCGACCCAGGGCACCCTAAAGAAATGTT...TCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGGACTGAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAACCAGGGGCTGAGGGCTaGCATACAGGGCCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVEPGAEG*HTGPEQ
Trigger: CTGCTCAGGCCCTGTATGCCAGCCCTCAGCCCCTGG...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CTCCCTCAGTCCCTTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGATTCTTTAGGGTGCCCTaGGTCGGTGAACTCATACTT +
Preference number: 4 (lower is better)
Translates to: LPQSLSRGLGRQLYLMEGFFRVP*VGELIL
Trigger: AAGTATGAGTTCACCGACCCAGGGCACCCTAAAGAA...TCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAAGGGACTGAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp GTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGCTGGCAGCGCGAAGGCCTTaGCCATGTGGTAGAGCTCAC +
Preference number: 4 (lower is better)
Translates to: VAFASLDLSHRLVLGFLLAARRP*PCGRAH
Trigger: GTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGC...CAGCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTTCCCGGGGCCTGGGTCGTCAGCTTTACCTCATGGAGGGAGCTGGACTGTTGTCCACTTGTTGTTCTGTaGGTTCCAGCAGGTGACAGC +
Preference number: 4 (lower is better)
Translates to: FPGAWVVSFTSWRELDCCPLVVL*VPAGDS
Trigger: GCTGTCACCTGCTGGAACCCACAGAACAACAAGTGG...ACAACAGTCCAGCTCCCTCCATGAGGTAAAGCTGACGACCCAGGCCCCGGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTCCCAGGGCGTGGACTaGTTGACAGGCGTCTGCCCC +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSSQGVD*LTGVCP
Trigger: GGGGCAGACGCCTGTCAATCAGTCCACGCCCTGGGA...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTAGGGAGTCACCCCGATaGCGGGGGCCTGGACGTTCA +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSRESPR*RGPGRS
Trigger: TGAACGTCCAGGCCCCCGTCATCGGGGTGACTCCCT...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGCTGGCATACAGGGCCTaGGCAGGCATGTTCACCACC +
Preference number: 4 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLLAYRA*AGMFTT
Trigger: GGTGGTGAACATGCCTGCTCAGGCCCTGTATGCCAG...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACCTGCCATGTGGCCGTTaGCCACAGGGGTGGGTCCCG +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDLPCGR*PQGWVP
Trigger: CGGGACCCACCCCTGTGGGCAACGGCCACATGGCAG...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCCCAACTTCTCCCGGCTaGTCTGGCTGCTGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFPTSPG*SGCCPA
Trigger: TGCAGGACAGCAGCCAGAGCAGCCGGGAGAAGTTGG...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAACCTCGGGGAAGATCTaGAGCGCGAAGGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVETSGKI*SAKALA
Trigger: GGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGT...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGCTGGGCAGCCAGGAGCTCTaGTGCATACTGTGCACGTGT +
Preference number: 4 (lower is better)
Translates to: VAFASLDLSHRLVLGFLLGSQEL*CILCTC
Trigger: ACACGTGCACAGTATGCAGCAGAGCTCCTGGCTGCC...CAGCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCCGTAGGCTTCCATGTTaGCCAGGGCTGGTCCCTCAC +
Preference number: 4 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFRRLPC*PGLVPH
Trigger: GTGAGGGACCAGCCCTGGGCAACATGGAAGCCTACG...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGTTCCAGCGGCCACCGTaGTCACCCATGGCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWFQRPP*SPMALC
Trigger: GCACAGGGCCATGGGTGACCACGGTGGCCGCTGGAA...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGAGGGGCCCTGCCATGTaGCCGTTGCCCACAGGGGTG +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLRGPAM*PLPTGV
Trigger: CACCCCTGTGGGCAACGGCCACATGGCAGGGCCCCT...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGACGGCTGGGCTGGTaGAGGTGGAGGCAGCAGGGG +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVGRLGW*RWRQQG
Trigger: CCCCTGCTGCCTCCACCTCCACCAGCCCAGCCGTCC...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAATTCTCCCGGCTGCTCTaGCTGCTGTCCTGCACCGAC +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVEFSRLL*LLSCTD
Trigger: GTCGGTGCAGGACAGCAGCCAGAGCAGCCGGGAGAA...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCTGAGGATCTCCTCCTaGGCGGCCACCTCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWLRISS*AATSGK
Trigger: CTTCCCCGAGGTGGCCGCCCAGGAGGAGATCCTCAG...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGGGACTGGAGGACACCTaGCGCTCGGCCTGCCTCATT +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWGLEDT*RSACLI
Trigger: AATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCC...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACGGTATCAGCGGGAGCTaGGGTCCCACATGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDGISGS*GPTWGG
Trigger: GCCTCCCCATGTGGGACCCCAGCTCCCGCTGATACC...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTAGGGGCCCTGCCATGTaGCCGTTGCCCACAGGGGTG +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVRGPAM*PLPTGV
Trigger: CACCCCTGTGGGCAACGGCCACATGGCAGGGCCCCT...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTAGAGCTGCGGACGGCTaGGCTGGTGGAGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVRAADG*AGGGGG
Trigger: GCCTCCACCTCCACCAGCCCAGCCGTCCGCAGCTCT...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGGGGCCGAGTCTGTTGTaGGCGGCCCATTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLGPSLL*AAHWWQ
Trigger: CTGCCACCAATGGGCCGCCCACAACAGACTCGGCCC...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CAA 72 bp GTTCTCATCATCTTTGTTAGATCAGACAGCCGTGTCTaGACAGTCCCCATGGCGGGTCTCCTGCTCCCGTGT +
Preference number: 4 (lower is better)
Translates to: VLIIFVRSDSRV*TVPMAGLLLPC
Trigger: ACACGGGAGCAGGAGACCCGCCATGGGGACTGTCAAGACACGGCTGTCTGATCTAACAAAGATGATGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACGATAGCTGGGATGGATaGACGGGAGGCGGACGGCAG +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDDSWDG*TGGGRQ
Trigger: CTGCCGTCCGCCTCCCGTTCATCCATCCCAGCTATC...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp AAAGCAAGCTGTGGGGCTTTTACATGCTGTGAGAAGAAGAACATAGGAGCTCAGGGTGACAGCCACCAGTaGGCGCTGGGTCATCCCAAC +
Preference number: 4 (lower is better)
Translates to: KASCGAFTCCEKKNIGAQGDSHQ*ALGHPN
Trigger: GTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACC...CTGAGCTCCTATGTTCTTCTTCTCACAGCATGTAAAAGCCCCACAGCTTGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGGTGGGTTCCAGCAGGTaGCAGCCACCAGTGAGCGCT +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLVGSSR*QPPVSA
Trigger: AGCGCTCACTGGTGGCTGTCACCTGCTGGAACCCAC...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGCCAGCGTCACCCCTaGTTCCATACCACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVESQRHP*FHTTCR
Trigger: TCTGCAGGTGGTATGGAATCAGGGGTGACGCTGGCT...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGTGTGGTAGAGCTCACTaGACTGCATGGCCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLCGRAH*TAWPQP
Trigger: TGGCTGAGGCCATGCAGTGCAGTGAGCTCTACCACA...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGGGTGTCTGCATCTCCTaGCGGGCGTGGGGTAGCATG +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLGVCIS*RAWGSM
Trigger: CATGCTACCCCACGCCCGGCAGGAGATGCAGACACC...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATCCACATGGTCCACGTTaGCGGCCACTCCAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHPHGPR*RPLQVP
Trigger: GGGGACTTGGAGTGGCCGGCAACGTGGACCATGTGG...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGACCTGCCGCTCGGCCTaGCTCATTCACGCCACCAAA +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWTCRSA*LIHATK
Trigger: TTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGT...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGGGACTGGAGGACACCTaGCGCTCGGCCTGCCTCATT +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLGLEDT*RSACLI
Trigger: AATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCC...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GCCTTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGACGCTGGTGGCCCCGTaGGTCCCATTGACGCTCCAC +
Preference number: 4 (lower is better)
Translates to: AFPFLRLLCRKATRRVFLTLVAP*VPLTLH
Trigger: GTGGAGCGTCAATGGGACCCACGGGGCCACCAGCGT...CAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTACGCTGGTGGCCCCGTaGGTCCCATTGACGCTCCAC +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVTLVAP*VPLTLH
Trigger: GTGGAGCGTCAATGGGACCCACGGGGCCACCAGCGT...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGGTATCAGCGGGAGCTaGGGTCCCACATGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVGISGS*GPTWGG
Trigger: GCCTCCCCATGTGGGACCCCAGCTCCCGCTGATACC...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTCCAGGGGCTGAGGGCTaGCATACAGGGCCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVPGAEG*HTGPEQ
Trigger: CTGCTCAGGCCCTGTATGCCAGCCCTCAGCCCCTGG...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGGCCGAGTCTGTTGTaGGCGGCCCATTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVGPSLL*AAHWWQ
Trigger: CTGCCACCAATGGGCCGCCCACAACAGACTCGGCCC...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGGCAGCGCGAAGGCCTTaGCCATGTGGTAGAGCTCAC +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWAARRP*PCGRAH
Trigger: GTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGC...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGGCGGCTGTGGGAGTaGGTAGTGGCCTGGTATCAG +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVGRLWE*VVAWYQ
Trigger: CTGATACCAGGCCACTACTCACTCCCACAGCCGCCC...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATGGTGCCCTGGGTCGGTaGACTCATACTTCCCCACTC +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHGALGR*THTSPL
Trigger: GAGTGGGGAAGTATGAGTTCACCGACCCAGGGCACC...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGCCCCAACCAAAACGATaGCCTCGGCCACACCTGCAG +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLPQPKR*PRPHLQ
Trigger: CTGCAGGTGTGGCCGAGGTCATCGTTTTGGTTGGGG...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATAGGCAAAGTGGATACTaGCAGGGGCTGAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHRQSGY*QGLRAG
Trigger: GCCAGCCCTCAGCCCCTGGCAGTATCCACTTTGCCT...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGTGAAACTGGAACTTaGTGGCCGCCTCGAGTAGAG +
Preference number: 4 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFCETGT*WPPRVE
Trigger: CTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACA...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGGGCAGAGGGGCTACTaGCTCCCATTGGTTAGTGAT +
Preference number: 4 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWGQRGY*LPLVSD
Trigger: ATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCC...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGACTGATTGTCAGCTTTaGAGATGCCGGGAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLTDCQL*RCREPW
Trigger: CCAAGGCTCCCGGCATCTCCAAAGCTGACAATCAGT...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATGTGATCAGGGAAGGCTaGTTTCCAGCGGCCACCGTG +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHVIREG*FPAATV
Trigger: CACGGTGGCCGCTGGAAACCAGCCTTCCCTGATCAC...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTACACTGCTCAGCGGTTaGGAGGGCGGCTGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVTLLSG*EGGCGS
Trigger: ACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGT...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCGGACGGCTGGGCTGGTaGAGGTGGAGGCAGCAGGGG +
Preference number: 4 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPGRLGW*RWRQQG
Trigger: CCCCTGCTGCCTCCACCTCCACCAGCCCAGCCGTCC...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp GTTTTTATCACAGATTATCACCTTCCCCTTCACGATTGGCTTCTTCTAGACAGTAGAGCTGCGGACGGCTaGGCTGGTGGAGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: VFITDYHLPLHDWLLLDSRAADG*AGGGGG
Trigger: GCCTCCACCTCCACCAGCCCAGCCGTCCGCAGCTCT...ACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGCCGAATGTACCGCCTTaGGCAGAGGGGCTACTGCCT +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLPNVPP*AEGLLP
Trigger: AGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGG...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGCCACGTGTTGGTCTGTaGCACATAGGACTGGAGGAC +
Preference number: 4 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWPRVGL*HIGLED
Trigger: GTCCTCCAGTCCTATGTGCCACAGACCAACACGTGG...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGAGATGGTGGTGGCTCTaGCATAAGCTCCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWRWWWL*HKLLPG
Trigger: TCCTGGGAGGAGCTTATGCCAGAGCCACCACCATCT...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATAGTCTTGGCATTGGCTaGGTCGATGACCAGCGACCC +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHSLGIG*VDDQRP
Trigger: GGGTCGCTGGTCATCGACTCAGCCAATGCCAAGACT...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp CCAGAGTTCATGTCATTTCTTTATGGCTGTCTAGAAGTGATTTCTCAGTGCTCCGATAGCTGGGATGGATaGACGGGAGGCGGACGGCAG +
Preference number: 4 (lower is better)
Translates to: PEFMSFLYGCLEVISQCSDSWDG*TGGGRQ
Trigger: CTGCCGTCCGCCTCCCGTTCATCCATCCCAGCTATC...GGAGCACTGAGAAATCACTTCTAGACAGCCATAAAGAAATGACATGAACTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACGTCATCCCAACCATCTaGCGGCCCCCAACCAAAACG +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDVIPTI*RPPTKT
Trigger: CGTTTTGGTTGGGGGCCGTCAGATGGTTGGGATGAC...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGCAGAACTGCCGAGAGTaGTTCATGTTTGGCCCCGCC +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLQNCRE*FMFGPA
Trigger: GGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTG...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTATGGTCCGAAGCATTTaGAGCCCATGGGCCGAGTCT +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSMVRSI*SPWAES
Trigger: AGACTCGGCCCATGGGCTGCAAATGCTTCGGACCAT...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGTGGTAGAGCTCACTaGACTGCATGGCCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSCGRAH*TAWPQP
Trigger: TGGCTGAGGCCATGCAGTGCAGTGAGCTCTACCACA...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTTGGGCGGCCCATTGGTaGCAGGAACACTACTGGGGA +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVWAAHW*QEHYWG
Trigger: TCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCA...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GGGTCCTCTCTAATCATCCAAACCTACATCTGTAGAAGGATACACACTCTTGATTTCTCCCGGCTGCTCTaGCTGCTGTCCTGCACCGAC +
Preference number: 4 (lower is better)
Translates to: GSSLIIQTYICRRIHTLDFSRLL*LLSCTD
Trigger: GTCGGTGCAGGACAGCAGCCAGAGCAGCCGGGAGAA...ATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGAGAGGACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATCAGCCTGCAGGTTaGAGAGCACCAGCTCCAACT +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWHQPAG*RAPAPT
Trigger: AGTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATG...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCCACGTGTTGGTCTGTaGCACATAGGACTGGAGGAC +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWPRVGL*HIGLED
Trigger: GTCCTCCAGTCCTATGTGCCACAGACCAACACGTGG...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCGATGTTGCCTTTTTCTaGGTCGTAGATGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFDVAFF*VVDGGG
Trigger: GCCACCACCATCTACGACCCAGAAAAAGGCAACATC...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp GTTTTTATCACAGATTATCACCTTCCCCTTCACGATTGGCTTCTTCTAGACAGTAGGGCGTGGACTGATTaGCAGGCGTCTGCCCCCATC +
Preference number: 4 (lower is better)
Translates to: VFITDYHLPLHDWLLLDSRAWTD*QASAPI
Trigger: GATGGGGGCAGACGCCTGTCAATCAGTCCACGCCCT...ACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTCCTGCACCGACCTTTaGATCAGGTCCTTGAAATAC +
Preference number: 4 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFSCTDL*IRSLKY
Trigger: GTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGA...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTAGTCTTGGCATTGGCTaGGTCGATGACCAGCGACCC +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVSLGIG*VDDQRP
Trigger: GGGTCGCTGGTCATCGACTCAGCCAATGCCAAGACT...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAATCATTGGGGACTCAATaGAGCTCCACGTGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVESLGTQ*SSTCWS
Trigger: AGACCAACACGTGGAGCTTCATTGAGTCCCCAATGA...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACAGCCAGGAGCTCTGCTaGATACTGTGCACGTGTTGC +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDSQELC*ILCTCC
Trigger: GCAACACGTGCACAGTATGCAGCAGAGCTCCTGGCT...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTCTCCCTCATCTGTTTaGAGGGCGGCTCATCAGTGT +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSSPSSV*RAAHQC
Trigger: ACACTGATGAGCCGCCCTCCAAACAGATGAGGGAGA...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTTTTATCACAGATTATCACCTTCCCCTTCACGATTGGCTTCTTCTAGACAGTACACTGCTCAGCGGTTaGGAGGGCGGCTGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: VFITDYHLPLHDWLLLDSTLLSG*EGGCGS
Trigger: ACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGT...ACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGCATCAGCCTGCAGGTTaGAGAGCACCAGCTCCAACT +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLHQPAG*RAPAPT
Trigger: AGTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATG...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGGAAACTGGAACTTGCTaGCCGCCTCGAGTAGAGTCT +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWETGTC*PPRVES
Trigger: AGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTC...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTTCGTACCTCTCCACATaGTCCACGTTGCCGGCCACT +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVSYLST*STLPAT
Trigger: AGTGGCCGGCAACGTGGACCATGTGGAGAGGTACGA...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACAGATGGTGGTGGCTCTaGCATAAGCTCCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDRWWWL*HKLLPG
Trigger: TCCTGGGAGGAGCTTATGCCAGAGCCACCACCATCT...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGATGTTGCCTTTTTCTaGGTCGTAGATGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWDVAFF*VVDGGG
Trigger: GCCACCACCATCTACGACCCAGAAAAAGGCAACATC...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTAGAGGGTCCATGTGTTaGTTGTGGGCTCGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSRGSMC*LWARRL
Trigger: AAGCCTACGAGCCCACAACCAACACATGGACCCTCT...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGACAGGACAGGGCATGTaGGGTAAGAGGGTCCATGTG +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLTGQGM*GKRVHV
Trigger: CACATGGACCCTCTTACCCCACATGCCCTGTCCTGT...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CAA 72 bp TACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTaGTGCCTCTCAGGCCGTGACTGTCATGGCTCGTCT +
Preference number: 4 (lower is better)
Translates to: YYAERQQEECFC*CLSGRDCHGSS
Trigger: AGACGAGCCATGACAGTCACGGCCTGAGAGGCACAAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp TTAGGTATAAAACACAGAGATTCTTCATGGACCACAAGAACATGTTCCTTCACTTCCCAGGGCGTGGACTaGTTGACAGGCGTCTGCCCC +
Preference number: 4 (lower is better)
Translates to: LGIKHRDSSWTTRTCSFTSQGVD*LTGVCP
Trigger: GGGGCAGACGCCTGTCAATCAGTCCACGCCCTGGGA...AGTGAAGGAACATGTTCTTGTGGTCCATGAAGAATCTCTGTGTTTTATACCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGGCGGTCCCAGCCTATaGGGTAATCTCTTTCGAAGC +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVGGPSL*GNLFRS
Trigger: GCTTCGAAAGAGATTACCGCATAGGCTGGGACCGCC...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAACATTTCTTTAGGGTaGCCTGGGTCGGTGAACTCA +
Preference number: 4 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVENISLG*PGSVNS
Trigger: TGAGTTCACCGACCCAGGGCACCCTAAAGAAATGTT...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTAGCCAGGAGCTCTGCTaGATACTGTGCACGTGTTGC +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVSQELC*ILCTCC
Trigger: GCAACACGTGCACAGTATGCAGCAGAGCTCCTGGCT...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TTTTCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGCGGGTTCGGGGTGTCTaGATCTCCTGCCGGGCGTGG +
Preference number: 4 (lower is better)
Translates to: FSTFNVENIRNVSAVSFSRVRGV*ISCRAW
Trigger: CCACGCCCGGCAGGAGATGCAGACACCCCGAACCCG...CGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCTGCTGGAGGGTGACAGCAGGTaGATATTTGTTGTCTATCAT +
Preference number: 4 (lower is better)
Translates to: VAFASLDLSHRLVLGFLLEGDSR*IFVVYH
Trigger: ATGATAGACAACAAATATGCACCTGCTGTCACCCTC...CAGCAGAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTCGTTGCCCACAGGGGTaGGTCCCGGGCGGGATACCT +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIRCPQG*VPGGIP
Trigger: AGGTATCCCGCCCGGGACCCACCCCTGTGGGCAACG...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTTGGGCGGCCCATTGGTaGCAGGAACACTACTGGGGA +
Preference number: 4 (lower is better)
Translates to: FPFLRLLCRKATRRVFLLWAAHW*QEHYWG
Trigger: TCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCA...AAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTCCATGTGTTGGTTGTaGGCTCGTAGGCTTCCATGT +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSSMCWL*ARRLPC
Trigger: ACATGGAAGCCTACGAGCCCACAACCAACACATGGA...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CAA 72 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTaGAAAGATAACCATGTTGTGTGGCATTCGCCTCAC +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLA*KDNHVVWHSPH
Trigger: GTGAGGCGAATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGATCGGATGCTGGTCGTaGGTCCTTGAGACTGATTGT +
Preference number: 4 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLIGCWS*VLETDC
Trigger: ACAATCAGTCTCAAGGACTCACGACCAGCATCCGAT...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTGGCGGTCCCAGCCTATaGGGTAATCTCTTTCGAAGC +
Preference number: 4 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPGGPSL*GNLFRS
Trigger: GCTTCGAAAGAGATTACCGCATAGGCTGGGACCGCC...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTTGTCAGCTTTGGAGATaGCGGGAGCCTTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: FPFLRLLCRKATRRVFLLCQLWR*REPWWW
Trigger: CCACCACCAAGGCTCCCGGCATCTCCAAAGCTGACA...AAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp GGGTCCTCTCTAATCATCCAAACCTACATCTGTAGAAGGATACACACTCTTGATATGGTCCGAAGCATTTaGAGCCCATGGGCCGAGTCT +
Preference number: 4 (lower is better)
Translates to: GSSLIIQTYICRRIHTLDMVRSI*SPWAES
Trigger: AGACTCGGCCCATGGGCTGCAAATGCTTCGGACCAT...ATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGAGAGGACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGGCTTTCGCTCTGCGTTaGTGGTTCAATTCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWAFALR*WFNSFN
Trigger: GTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGC...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTGGCAGCCAGGAGCTCTaGTGCATACTGTGCACGTGT +
Preference number: 4 (lower is better)
Translates to: FPFLRLLCRKATRRVFLLGSQEL*CILCTC
Trigger: ACACGTGCACAGTATGCAGCAGAGCTCCTGGCTGCC...AAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTGGGCAGAGGGGCTACTaGCTCCCATTGGTTAGTGAT +
Preference number: 4 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPGQRGY*LPLVSD
Trigger: ATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCC...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCCGTAGGCTTCCATGTTaGCCAGGGCTGGTCCCTCAC +
Preference number: 4 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPRRLPC*PGLVPH
Trigger: GTGAGGGACCAGCCCTGGGCAACATGGAAGCCTACG...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACCTGTGCACGTGTTGCTaGGTCCTTCTTGATCCACTT +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDLCTCC*VLLDPL
Trigger: AAGTGGATCAAGAAGGACCCAGCAACACGTGCACAG...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGGAGGGACAGTCATTCTaGAGACCAGGTTCCAGTTAT +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWEGQSF*RPGSSY
Trigger: ATAACTGGAACCTGGTCTCCAGAATGACTGTCCCTC...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTTCGTACCTCTCCACATaGTCCACGTTGCCGGCCACT +
Preference number: 4 (lower is better)
Translates to: FPFLRLLCRKATRRVFLLSYLST*STLPAT
Trigger: AGTGGCCGGCAACGTGGACCATGTGGAGAGGTACGA...AAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTTCTGGGTCGTAGATaGTGGTGGCTCTGGCATAAG +
Preference number: 4 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDFLGRR*WWLWHK
Trigger: CTTATGCCAGAGCCACCACCATCTACGACCCAGAAA...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp CTATTTTCTTTAATGAAGATACTGTTTATCACACAGGAGGTACTTCCCCTGATTGGGCGGCTGTGGGAGTaGGTAGTGGCCTGGTATCAG +
Preference number: 4 (lower is better)
Translates to: LFSLMKILFITQEVLPLIGRLWE*VVAWYQ
Trigger: CTGATACCAGGCCACTACTCACTCCCACAGCCGCCC...AATCAGGGGAAGTACCTCCTGTGTGATAAACAGTATCTTCATTAAAGAAAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp ATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTCAGCACTCACTACACTaGAGAACTCGCGGTCATAGA +
Preference number: 4 (lower is better)
Translates to: IRNVSAVSFSIVFCGPLVQHSLH*RTRGHR
Trigger: TCTATGACCGCGAGTTCTTCAGTGTAGTGAGTGCTG...AACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTTGTTTGGCCCCGCCTTaGTGTTGCCTTTTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPCLAPP*CCLFLG
Trigger: ACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACA...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp CCAGAGTTCATGTCATTTCTTTATGGCTGTCTAGAAGTGATTTCTCAGTGCTCCTGTGAAACTGGAACTTaGTGGCCGCCTCGAGTAGAG +
Preference number: 4 (lower is better)
Translates to: PEFMSFLYGCLEVISQCSCETGT*WPPRVE
Trigger: CTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACA...GGAGCACTGAGAAATCACTTCTAGACAGCCATAAAGAAATGACATGAACTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp GATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTAGGACACACAGACTTTaGAGAAGGTGTGAAACTGGA +
Preference number: 4 (lower is better)
Translates to: DNHVVWHSPHWTCPIDLSRTHRL*RRCETG
Trigger: TCCAGTTTCACACCTTCTGCAAAGTCTGTGTGTCCT...AGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGGTGTCTGCATCTCCTaGCGGGCGTGGGGTAGCATG +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIGVCIS*RAWGSM
Trigger: CATGCTACCCCACGCCCGGCAGGAGATGCAGACACC...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTAGGTATAAAACACAGAGATTCTTCATGGACCACAAGAACATGTTCCTTCACTTGGCAGGAACACTACTaGGGAGAGCTGCGGACGGCT +
Preference number: 4 (lower is better)
Translates to: LGIKHRDSSWTTRTCSFTWQEHY*GELRTA
Trigger: AGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCA...AGTGAAGGAACATGTTCTTGTGGTCCATGAAGAATCTCTGTGTTTTATACCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp CAGGAAGGCTACCCTGCCTGGGTCTCAGCATGGAAATCACTGATTTTCTTCCTGTTTGTTGTCTATCATTaGGGACTCAATGAAGCTCCA +
Preference number: 4 (lower is better)
Translates to: QEGYPAWVSAWKSLIFFLFVVYH*GLNEAP
Trigger: TGGAGCTTCATTGAGTCCCCAATGATAGACAACAAA...CAGGAAGAAAATCAGTGATTTCCATGCTGAGACCCAGGCAGGGTAGCCTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTTTTCTGGGTCGTAGATaGTGGTGGCTCTGGCATAAG +
Preference number: 4 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVFLGRR*WWLWHK
Trigger: CTTATGCCAGAGCCACCACCATCTACGACCCAGAAA...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTCTGGCATACAGGGCCTaGGCAGGCATGTTCACCACC +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSILAYRA*AGMFTT
Trigger: GGTGGTGAACATGCCTGCTCAGGCCCTGTATGCCAG...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATATGCTTCTGATGACTTaGTCAGCTCTTCGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHMLLMT*SALRCP
Trigger: TGGACAACGAAGAGCTGATCAAGTCATCAGAAGCAT...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCCAACACAGCCGTGTCTaGACACAGGACAGGGCATGT +
Preference number: 4 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPQHSRV*TQDRAC
Trigger: ACATGCCCTGTCCTGTGTTCAGACACGGCTGTGTTG...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR GCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTAGGCAAAGTGGATACTaGCAGGGGCTGAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIRQSGY*QGLRAG
Trigger: GCCAGCCCTCAGCCCCTGGCAGTATCCACTTTGCCT...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTACCTGCCGCTCGGCCTaGCTCATTCACGCCACCAAA +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSITCRSA*LIHATK
Trigger: TTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGT...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTCACCGTGGTCACCCATaGCCCTGTGCCTGGATTGTC +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIHRGHP*PCAWIV
Trigger: GACAATCCAGGCACAGGGCCATGGGTGACCACGGTG...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTTTCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGGTGATCAGGGAAGGCTaGTTTCCAGCGGCCACCGTG +
Preference number: 4 (lower is better)
Translates to: FSTFNVENIRNVSAVSFSVIREG*FPAATV
Trigger: CACGGTGGCCGCTGGAAACCAGCCTTCCCTGATCAC...CGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTTGGCAGGAACACTACTaGGGAGAGCTGCGGACGGCT +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIWQEHY*GELRTA
Trigger: AGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCA...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGTTCGCTCTGCGTTGCTaGTTCAATTCCTTCAACATT +
Preference number: 4 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWFALRC*FNSFNI
Trigger: AATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAA...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CTATTTTCTTTAATGAAGATACTGTTTATCACACAGGAGGTACTTCCCCTGATTCCGAATGTACCGCCTTaGGCAGAGGGGCTACTGCCT +
Preference number: 4 (lower is better)
Translates to: LFSLMKILFITQEVLPLIPNVPP*AEGLLP
Trigger: AGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGG...AATCAGGGGAAGTACCTCCTGTGTGATAAACAGTATCTTCATTAAAGAAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCGGTCGTAGATGGTGGTaGCTCTGGCATAAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPGRRWW*LWHKLL
Trigger: GAGGAGCTTATGCCAGAGCCACCACCATCTACGACC...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp TTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTATCGGATGCTGGTCGTaGGTCCTTGAGACTGATTGT +
Preference number: 4 (lower is better)
Translates to: FPFLRLLCRKATRRVFLLIGCWS*VLETDC
Trigger: ACAATCAGTCTCAAGGACTCACGACCAGCATCCGAT...AAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTTCCTGCACCGACCTTTaGATCAGGTCCTTGAAATAC +
Preference number: 4 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPSCTDL*IRSLKY
Trigger: GTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGA...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATTTCGCTCTGCGTTGCTaGTTCAATTCCTTCAACATT +
Preference number: 4 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHFALRC*FNSFNI
Trigger: AATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAA...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp CCAGAGTTCATGTCATTTCTTTATGGCTGTCTAGAAGTGATTTCTCAGTGCTCCGAGGGACAGTCATTCTaGAGACCAGGTTCCAGTTAT +
Preference number: 4 (lower is better)
Translates to: PEFMSFLYGCLEVISQCSEGQSF*RPGSSY
Trigger: ATAACTGGAACCTGGTCTCCAGAATGACTGTCCCTC...GGAGCACTGAGAAATCACTTCTAGACAGCCATAAAGAAATGACATGAACTCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGCTCCATAGGAGTGTGTaGTCAGGGAAGGCTGGTTTC +
Preference number: 4 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVLHRSV*SGKAGF
Trigger: GAAACCAGCCTTCCCTGATCACACACTCCTATGGAG...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCACTTTGCAGAAGGTGTaGAACTGGAACTTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPTLQKV*NWNLLA
Trigger: GGCCAGCAAGTTCCAGTTTCACACCTTCTGCAAAGT...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTGTTTGGCCCCGCCTTaGTGTTGCCTTTTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVCLAPP*CCLFLG
Trigger: ACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACA...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTCAACACAGCCGTGTCTaGACACAGGACAGGGCATGT +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIQHSRV*TQDRAC
Trigger: ACATGCCCTGTCCTGTGTTCAGACACGGCTGTGTTG...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGGTCGTAGATGGTGGTaGCTCTGGCATAAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIGRRWW*LWHKLL
Trigger: GAGGAGCTTATGCCAGAGCCACCACCATCTACGACC...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
3UTR CAA 72 bp TCATCCAAACCTACATCTGTAGAAGGATACACACTCTaGATGACCAAGAGGAAGAACAGGACTGTAGTGTCA +
Preference number: 4 (lower is better)
Translates to: SSKPTSVEGYTL*MTKRKNRTVVS
Trigger: TGACACTACAGTCCTGTTCTTCCTCTTGGTCATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 72 bp TGTTTTTATCACAGATTATCACCTTCCCCTTCACGATaGGCTTCTTCTAGACAGTCTGTGTCCACCCTTGTA +
Preference number: 4 (lower is better)
Translates to: CFYHRLSPSPSR*ASSRQSVSTLV
Trigger: TACAAGGGTGGACACAGACTGTCTAGAAGAAGCCAATCGTGAAGGGGAAGGTGATAATCTGTGATAAAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp CTATTTTCTTTAATGAAGATACTGTTTATCACACAGGAGGTACTTCCCCTGATTCTCCATAGGAGTGTGTaGTCAGGGAAGGCTGGTTTC +
Preference number: 4 (lower is better)
Translates to: LFSLMKILFITQEVLPLILHRSV*SGKAGF
Trigger: GAAACCAGCCTTCCCTGATCACACACTCCTATGGAG...AATCAGGGGAAGTACCTCCTGTGTGATAAACAGTATCTTCATTAAAGAAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGACTTTGCAGAAGGTGTaGAACTGGAACTTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVTLQKV*NWNLLA
Trigger: GGCCAGCAAGTTCCAGTTTCACACCTTCTGCAAAGT...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR TCA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTCATTGGGGACTCAATaGAGCTCCACGTGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVSLGTQ*SSTCWS
Trigger: AGACCAACACGTGGAGCTTCATTGAGTCCCCAATGA...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TTCCCTTTTCTCAGGTTACTATGCAGAAAGGCAACAAGAAGAGTGTTTCTGCTTAGGACACACAGACTTTaGAGAAGGTGTGAAACTGGA +
Preference number: 4 (lower is better)
Translates to: FPFLRLLCRKATRRVFLLRTHRL*RRCETG
Trigger: TCCAGTTTCACACCTTCTGCAAAGTCTGTGTGTCCT...AAGCAGAAACACTCTTCTTGTTGCCTTTCTGCATAGTAACCTGAGAAAAGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CCA 90 bp TTTTCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGACTGATTGTCAGCTTTaGAGATGCCGGGAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: FSTFNVENIRNVSAVSFSTDCQL*RCREPW
Trigger: CCAAGGCTCCCGGCATCTCCAAAGCTGACAATCAGT...CGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGAAACTGGAACTTGCTaGCCGCCTCGAGTAGAGTCT +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIETGTC*PPRVES
Trigger: AGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTC...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGCTGTGCACGTGTTGCTaGGTCCTTCTTGATCCACTT +
Preference number: 4 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVLCTCC*VLLDPL
Trigger: AAGTGGATCAAGAAGGACCCAGCAACACGTGCACAG...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTCTTTAGGGTGCCCTaGGTCGGTGAACTCATACTT +
Preference number: 4 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVFFRVP*VGELIL
Trigger: AAGTATGAGTTCACCGACCCAGGGCACCCTAAAGAA...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTTTTGTTGTCTATCATTaGGGACTCAATGAAGCTCCA +
Preference number: 4 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPFVVYH*GLNEAP
Trigger: TGGAGCTTCATTGAGTCCCCAATGATAGACAACAAA...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGCTTTCGCTCTGCGTTaGTGGTTCAATTCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIAFALR*WFNSFN
Trigger: GTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGC...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCGCTAGAACATTTTGGTaGACTTCAAACTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPARTFW*TSNSLP
Trigger: AGGCAGAGAGTTTGAAGTCCACCAAAATGTTCTAGC...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
3UTR CAA 72 bp AATAATATTAAAAACTGCATAACGAAGCTCGGTATCTaGTCAAGTGGGAGCCACACTTGTAATGCTAGAGGC +
Preference number: 4 (lower is better)
Translates to: NNIKNCITKLGI*SSGSHTCNARG
Trigger: GCCTCTAGCATTACAAGTGTGGCTCCCACTTGACAAGATACCGAGCTTCGTTATGCAGTTTTTAATATTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR TCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTATGCTTCTGATGACTTaGTCAGCTCTTCGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIMLLMT*SALRCP
Trigger: TGGACAACGAAGAGCTGATCAAGTCATCAGAAGCAT...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR GCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGAGGGTGACAGCAGGTaGATATTTGTTGTCTATCAT +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIEGDSR*IFVVYH
Trigger: ATGATAGACAACAAATATGCACCTGCTGTCACCCTC...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CCA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGCTAGAACATTTTGGTaGACTTCAAACTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: STFNVENIRNVSAVSFSIARTFW*TSNSLP
Trigger: AGGCAGAGAGTTTGAAGTCCACCAAAATGTTCTAGC...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TCTTCCCAGCGACCCCTGCGGCTGCCAGCCCTGGCTCTGCACGTGCAGCTGGCCGAGATGCCGGGAGCCTaGGTGGTGGCTGCGGAGGCC +
Preference number: 5 (lower is better)
Translates to: SSQRPLRLPALALHVQLAEMPGA*VVAAEA
Trigger: GGCCTCCGCAGCCACCACCAAGGCTCCCGGCATCTC...GGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS CCA 90 bp CTGCCACCAGCACCGGAGGTGACGCTGCAGACGCTGGTGGCCCCGTaGGTCCCATTGACGCTCCACTCACGGCGGTCCCAGCCTATGCGG +
Preference number: 5 (lower is better)
Translates to: LPPAPEVTLQTLVAP*VPLTLHSRRSQPMR
Trigger: CCGCATAGGCTGGGACCGCCGTGAGTGGAGCGTCAATGGGACCCACGGGGCCACCAGCGTCTGCAGCGTCACCTCCGGTGCTGGTGGCAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp GTGGAGGCAGCAGGGGCCCTGCCATGTGGCCGTTGCCCACAGGGGTaGGTCCCGGGCGGGATACCTGCCCTACTCCAGGCAAAGTGGATA +
Preference number: 5 (lower is better)
Translates to: VEAAGALPCGRCPQG*VPGGIPALLQAKWI
Trigger: TATCCACTTTGCCTGGAGTAGGGCAGGTATCCCGCCCGGGACCCACCCCTGTGGGCAACGGCCACATGGCAGGGCCCCTGCTGCCTCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp GGGCCGAGTCTGTTGTGGGCGGCCCATTGGTGGCAGGAACACTACTaGGGAGAGCTGCGGACGGCTGGGCTGGTGGAGGTGGAGGCAGCA +
Preference number: 5 (lower is better)
Translates to: GPSLLWAAHWWQEHY*GELRTAGLVEVEAA
Trigger: TGCTGCCTCCACCTCCACCAGCCCAGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CAGGGGTGGGTCCCGGGCGGGATACCTGCCCTACTCCAGGCAAAGTaGATACTGCCAGGGGCTGAGGGCTGGCATACAGGGCCTGAGCAG +
Preference number: 5 (lower is better)
Translates to: QGWVPGGIPALLQAK*ILPGAEGWHTGPEQ
Trigger: CTGCTCAGGCCCTGTATGCCAGCCCTCAGCCCCTGGCAGTATCCACTTTGCCTGGAGTAGGGCAGGTATCCCGCCCGGGACCCACCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 90 bp GTTCACCACCACACTGCTCAGCGGTTGGGAGGGCGGCTGTGGGAGTaGGTAGTGGCCTGGTATCAGCGGGAGCTGGGGTCCCACATGGGG +
Preference number: 5 (lower is better)
Translates to: VHHHTAQRLGGRLWE*VVAWYQRELGSHMG
Trigger: CCCCATGTGGGACCCCAGCTCCCGCTGATACCAGGCCACTACTCACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGTGGTGGTGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp GCATTTGCAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATTGGTaGCAGGAACACTACTGGGGAGAGCTGCGGACGGCTGGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: AFAAHGPSLLWAAHW*QEHYWGELRTAGLV
Trigger: CACCAGCCCAGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CCTCCTGGGCGGCCACCTCGGGGAAGATCTGCAGCGCGAAGGCCTTaGCCATGTGGTAGAGCTCACTGCACTGCATGGCCTCAGCCATGG +
Preference number: 5 (lower is better)
Translates to: PPGRPPRGRSAARRP*PCGRAHCTAWPQPW
Trigger: CCATGGCTGAGGCCATGCAGTGCAGTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGTGGCCGCCCAGGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp GAGGGCTGGCATACAGGGCCTGAGCAGGCATGTTCACCACCACACTaGTCAGCGGTTGGGAGGGCGGCTGTGGGAGTGAGTAGTGGCCTG +
Preference number: 5 (lower is better)
Translates to: EGWHTGPEQACSPPH*SAVGRAAVGVSSGL
Trigger: CAGGCCACTACTCACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGTGGTGGTGAACATGCCTGCTCAGGCCCTGTATGCCAGCCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp GAAGCATTTGCAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATTaGTGGCAGGAACACTACTGGGGAGAGCTGCGGACGGCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: EAFAAHGPSLLWAAH*WQEHYWGELRTAGL
Trigger: CAGCCCAGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TCTTCCCAGCGACCCCTGCGGCTGCCAGCCCTGGCTCTGCACGTGCAGCTGGCCGTTGCTGGGTCCTTCTaGATCCACTTGATGACAGTC +
Preference number: 5 (lower is better)
Translates to: SSQRPLRLPALALHVQLAVAGSF*IHLMTV
Trigger: GACTGTCATCAAGTGGATCAAGAAGGACCCAGCAAC...GGCCAGCTGCACGTGCAGAGCCAGGGCTGGCAGCCGCAGGGGTCGCTGGGAAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS TCA 90 bp CAGCAGGTGACAGCCACCAGTGAGCGCTGGGTCATCCCAACCATCTaGCGGCCCCCAACCAAAACGATGACCTCGGCCACACCTGCAGAG +
Preference number: 5 (lower is better)
Translates to: QQVTATSERWVIPTI*RPPTKTMTSATPAE
Trigger: CTCTGCAGGTGTGGCCGAGGTCATCGTTTTGGTTGGGGGCCGTCAGATGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS CCA 90 bp CTCCAATGGTCCGAAGCATTTGCAGCCCATGGGCCGAGTCTGTTGTaGGCGGCCCATTGGTGGCAGGAACACTACTGGGGAGAGCTGCGG +
Preference number: 5 (lower is better)
Translates to: LQWSEAFAAHGPSLL*AAHWWQEHYWGELR
Trigger: CCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 90 bp CTCATCTGTTTGGAGGGCGGCTCATCAGTGTCCCAGGGCGTGGACTaGTTGACAGGCGTCTGCCCCCATCGGATGCTGGTCGTGAGTCCT +
Preference number: 5 (lower is better)
Translates to: LICLEGGSSVSQGVD*LTGVCPHRMLVVSP
Trigger: AGGACTCACGACCAGCATCCGATGGGGGCAGACGCCTGTCAATCAGTCCACGCCCTGGGACACTGATGAGCCGCCCTCCAAACAGATGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 90 bp GCGAGGCCAAGGGGTACCACTTGTTGTTCTGTGGGTTCCAGCAGGTaGCAGCCACCAGTGAGCGCTGGGTCATCCCAACCATCTGACGGC +
Preference number: 5 (lower is better)
Translates to: ARPRGTTCCSVGSSR*QPPVSAGSSQPSDG
Trigger: GCCGTCAGATGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTGCTGGAACCCACAGAACAACAAGTGGTACCCCTTGGCCTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS GCA 90 bp GGAAGATCTGCAGCGCGAAGGCCTTGGCCATGTGGTAGAGCTCACTaGACTGCATGGCCTCAGCCATGGCCAGCACTCCCAGACAGTTGC +
Preference number: 5 (lower is better)
Translates to: GRSAARRPWPCGRAH*TAWPQPWPALPDSC
Trigger: GCAACTGTCTGGGAGTGCTGGCCATGGCTGAGGCCATGCAGTGCAGTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGCAGATCTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp CTGCCGCTCGGCCTGCCTCATTCACGCCACCAAACACGTAGATTTTaGCACCACACACAGTGGCCGCTGCCGAATGTACCGCCTTGGGCA +
Preference number: 5 (lower is better)
Translates to: LPLGLPHSRHQTRRF*HHTQWPLPNVPPWA
Trigger: TGCCCAAGGCGGTACATTCGGCAGCGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTGGGAAGTCCCACAGCGTGCCGAATGTACCGCCTaGGGCAGAGGGGCTACTGCC +
Preference number: 5 (lower is better)
Translates to: KGPTSGATYKELWEVPQRAECTA*GRGATA
Trigger: GGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGC...ACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS GCA 90 bp GGGTCGGTGAACTCATACTTCCCCACTCCAATGGTCCGAAGCATTTaGAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATTGGTGGCA +
Preference number: 5 (lower is better)
Translates to: GSVNSYFPTPMVRSI*SPWAESVVGGPLVA
Trigger: TGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAAGTATGAGTTCACCGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp CACGCCACCAAACACGTAGATTTTGCCACCACACACAGTGGCCGCTaGCGAATGTACCGCCTTGGGCAGAGGGGCTACTGCCTCCCATTG +
Preference number: 5 (lower is better)
Translates to: HATKHVDFATTHSGR*RMYRLGQRGYCLPL
Trigger: CAATGGGAGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGCAGCGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp ACACAGGACAGGGCATGTGGGGTAAGAGGGTCCATGTGTTGGTTGTaGGCTCGTAGGCTTCCATGTTGCCCAGGGCTGGTCCCTCACTGC +
Preference number: 5 (lower is better)
Translates to: TQDRACGVRGSMCWL*ARRLPCCPGLVPHC
Trigger: GCAGTGAGGGACCAGCCCTGGGCAACATGGAAGCCTACGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCTGTCCTGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCGAGATGCCGGGAGCCTaGGTGGTGGCTGCGGAGGCC +
Preference number: 5 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFEMPGA*VVAAEA
Trigger: GGCCTCCGCAGCCACCACCAAGGCTCCCGGCATCTC...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp CACAGTGGCCGCTGCCGAATGTACCGCCTTGGGCAGAGGGGCTACTaGCTCCCATTGGTTAGTGATAGTGTCGTACCTCTCCACATGGTC +
Preference number: 5 (lower is better)
Translates to: HSGRCRMYRLGQRGY*LPLVSDSVVPLHMV
Trigger: GACCATGTGGAGAGGTACGACACTATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGCAGCGGCCACTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CCTTGGCCATGTGGTAGAGCTCACTGCACTGCATGGCCTCAGCCATaGCCAGCACTCCCAGACAGTTGCTGGCAGTCAGCTGCTTCTCTA +
Preference number: 5 (lower is better)
Translates to: PWPCGRAHCTAWPQP*PALPDSCWQSAASL
Trigger: TAGAGAAGCAGCTGACTGCCAGCAACTGTCTGGGAGTGCTGGCCATGGCTGAGGCCATGCAGTGCAGTGAGCTCTACCACATGGCCAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CCTCATTCACGCCACCAAACACGTAGATTTTGCCACCACACACAGTaGCCGCTGCCGAATGTACCGCCTTGGGCAGAGGGGCTACTGCCT +
Preference number: 5 (lower is better)
Translates to: PHSRHQTRRFCHHTQ*PLPNVPPWAEGLLP
Trigger: AGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGCAGCGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTGAATGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTGGGAAGTCCCACAGCGTGTTGTGGGCGGCCCATaGGTGGCAGGAACACTACTG +
Preference number: 5 (lower is better)
Translates to: KGPTSGATYKELWEVPQRVVGGP*VAGTLL
Trigger: CAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAAC...ACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS TCA 90 bp GTACCACTTGTTGTTCTGTGGGTTCCAGCAGGTGACAGCCACCAGTaGGCGCTGGGTCATCCCAACCATCTGACGGCCCCCAACCAAAAC +
Preference number: 5 (lower is better)
Translates to: VPLVVLWVPAGDSHQ*ALGHPNHLTAPNQN
Trigger: GTTTTGGTTGGGGGCCGTCAGATGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTGCTGGAACCCACAGAACAACAAGTGGTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS GCA 90 bp GTTGGTCTGTGGCACATAGGACTGGAGGACACCTGCCGCTCGGCCTaGCTCATTCACGCCACCAAACACGTAGATTTTGCCACCACACAC +
Preference number: 5 (lower is better)
Translates to: VGLWHIGLEDTCRSA*LIHATKHVDFATTH
Trigger: GTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCACAGACCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCCTGCCATGTGGCCGTaGCCCACAGGGGTGGGTCCC +
Preference number: 5 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWPAMWP*PTGVGP
Trigger: GGGACCCACCCCTGTGGGCAACGGCCACATGGCAGG...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GGCTCGTCTAAGAAGGCTGTCCCCATCCTGAGAGCTCTCATGGCAGGTGCCTTGGCCTCGAGTAGAGTCTaGGCATTGGCTGAGTCGATG +
Preference number: 5 (lower is better)
Translates to: GSSKKAVPILRALMAGALASSRV*ALAESM
Trigger: CATCGACTCAGCCAATGCCAAGACTCTACTCGAGGC...CAAGGCACCTGCCATGAGAGCTCTCAGGATGGGGACAGCCTTCTTAGACGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp AAGGGCCCTACCTCTGGCGCTACCTACAAAGAGCTTTGGGAAGTCCCACAGCGTGGGTCCATGTGTTGGTaGTGGGCTCGTAGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: KGPTSGATYKELWEVPQRGSMCW*WARRLP
Trigger: TGGAAGCCTACGAGCCCACAACCAACACATGGACCC...ACGCTGTGGGACTTCCCAAAGCTCTTTGTAGGTAGCGCCAGAGGTAGGGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS TCA 90 bp ACTTGCTGGCCGCCTCGAGTAGAGTCTTGGCATTGGCTGAGTCGATaGCCAGCGACCCCGTGTAGACAAACTCTAGCAGTAGCTCCAGGA +
Preference number: 5 (lower is better)
Translates to: TCWPPRVESWHWLSR*PATPCRQTLAVAPG
Trigger: TCCTGGAGCTACTGCTAGAGTTTGTCTACACGGGGTCGCTGGTCATCGACTCAGCCAATGCCAAGACTCTACTCGAGGCGGCCAGCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp GAAGCTCCACGTGTTGGTCTGTGGCACATAGGACTGGAGGACACCTaGCGCTCGGCCTGCCTCATTCACGCCACCAAACACGTAGATTTT +
Preference number: 5 (lower is better)
Translates to: EAPRVGLWHIGLEDT*RSACLIHATKHVDF
Trigger: AAAATCTACGTGTTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCACAGACCAACACGTGGAGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp AACTCATACTTCCCCACTCCAATGGTCCGAAGCATTTGCAGCCCATaGGCCGAGTCTGTTGTGGGCGGCCCATTGGTGGCAGGAACACTA +
Preference number: 5 (lower is better)
Translates to: NSYFPTPMVRSICSP*AESVVGGPLVAGTL
Trigger: TAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAAGTATGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp TGTAGACAAACTCTAGCAGTAGCTCCAGGACATCAGCCTGCAGGTTaGAGAGCACCAGCTCCAACTTCTCCCGGCTGCTCTGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: CRQTLAVAPGHQPAG*RAPAPTSPGCSGCC
Trigger: ACAGCAGCCAGAGCAGCCGGGAGAAGTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATGTCCTGGAGCTACTGCTAGAGTTTGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAACATGGGCCGAGTCTGTaGTGGGCGGCCCATTGGTGG +
Preference number: 5 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVEHGPSL*WAAHWW
Trigger: CCACCAATGGGCCGCCCACAACAGACTCGGCCCATG...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 90 bp CCATACCACCTGAGAGGTAGATGTTGTCCCCAGCACTCACTACACTaGAGAACTCGCGGTCATAGAAAGGCAGCGAGGCCAAGGGGTACC +
Preference number: 5 (lower is better)
Translates to: PYHLRGRCCPQHSLH*RTRGHRKAARPRGT
Trigger: GGTACCCCTTGGCCTCGCTGCCTTTCTATGACCGCGAGTTCTTCAGTGTAGTGAGTGCTGGGGACAACATCTACCTCTCAGGTGGTATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS TCA 90 bp CGGCACTGCAGAACTGCCGAGAGTGATTCATGTTTGGCCCCGCCTTaGTGTTGCCTTTTTCTGGGTCGTAGATGGTGGTGGCTCTGGCAT +
Preference number: 5 (lower is better)
Translates to: RHCRTAESDSCLAPP*CCLFLGRRWWWLWH
Trigger: ATGCCAGAGCCACCACCATCTACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTGCAGTGCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp GTTGTCTATCATTGGGGACTCAATGAAGCTCCACGTGTTGGTCTGTaGCACATAGGACTGGAGGACACCTGCCGCTCGGCCTGCCTCATT +
Preference number: 5 (lower is better)
Translates to: VVYHWGLNEAPRVGL*HIGLEDTCRSACLI
Trigger: AATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCACAGACCAACACGTGGAGCTTCATTGAGTCCCCAATGATAGACAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTCCTGCCATGTGGCCGTaGCCCACAGGGGTGGGTCCC +
Preference number: 5 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVPAMWP*PTGVGP
Trigger: GGGACCCACCCCTGTGGGCAACGGCCACATGGCAGG...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTTTCGTTGTGGGCGGCCCATaGGTGGCAGGAACACTACTG +
Preference number: 5 (lower is better)
Translates to: VVWHSPHWTCPIDLSWAFVVGGP*VAGTLL
Trigger: CAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAAC...GAAAGCCCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CCGAGAGTGATTCATGTTTGGCCCCGCCTTGATGTTGCCTTTTTCTaGGTCGTAGATGGTGGTGGCTCTGGCATAAGCTCCTCCCAGGAT +
Preference number: 5 (lower is better)
Translates to: PRVIHVWPRLDVAFF*VVDGGGSGISSSQD
Trigger: ATCCTGGGAGGAGCTTATGCCAGAGCCACCACCATCTACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp ATCGAGCACCACGGCACTGCAGAACTGCCGAGAGTGATTCATGTTTaGCCCCGCCTTGATGTTGCCTTTTTCTGGGTCGTAGATGGTGGT +
Preference number: 5 (lower is better)
Translates to: IEHHGTAELPRVIHV*PRLDVAFFWVVDGG
Trigger: ACCACCATCTACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTGCAGTGCCGTGGTGCTCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CCATGTGTTGGTTGTGGGCTCGTAGGCTTCCATGTTGCCCAGGGCTaGTCCCTCACTGCTCACGATGCCTCCAGTAGCATAAATTTTACC +
Preference number: 5 (lower is better)
Translates to: PCVGCGLVGFHVAQG*SLTAHDASSSINFT
Trigger: GGTAAAATTTATGCTACTGGAGGCATCGTGAGCAGTGAGGGACCAGCCCTGGGCAACATGGAAGCCTACGAGCCCACAACCAACACATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGGCCCTGTGCCTGGATaGTCGCTCTCCCTCATCTGT +
Preference number: 5 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWGPVPG*SLSLIC
Trigger: ACAGATGAGGGAGAGCGACAATCCAGGCACAGGGCC...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GGCTCGTCTAAGAAGGCTGTCCCCATCCTGAGAGCTCTCATGGCAGGTGCCTTGCATGCTTCTGATGACTaGATCAGCTCTTCGTTGTCC +
Preference number: 5 (lower is better)
Translates to: GSSKKAVPILRALMAGALHASDD*ISSSLS
Trigger: GGACAACGAAGAGCTGATCAAGTCATCAGAAGCATG...CAAGGCACCTGCCATGAGAGCTCTCAGGATGGGGACAGCCTTCTTAGACGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACGCCGAATGTACCGCCTaGGGCAGAGGGGCTACTGCC +
Preference number: 5 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDAECTA*GRGATA
Trigger: GGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGC...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAGGGTCCATGTGTTGGTaGTGGGCTCGTAGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: VSAVSFSIVFCGPLVGVEGSMCW*WARRLP
Trigger: TGGAAGCCTACGAGCCCACAACCAACACATGGACCC...TTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 90 bp GTCAGCTGCTTCTCTAGAAAGGACACACAGACTTTGCAGAAGGTGTaGAACTGGAACTTGCTGGCCGCCTCGAGTAGAGTCTTGGCATTG +
Preference number: 5 (lower is better)
Translates to: VSCFSRKDTQTLQKV*NWNLLAASSRVLAL
Trigger: CAATGCCAAGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACACCTTCTGCAAAGTCTGTGTGTCCTTTCTAGAGAAGCAGCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGAATGGTCCGAAGCATTaGCAGCCCATGGGCCGAGTC +
Preference number: 5 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLNGPKH*QPMGRV
Trigger: GACTCGGCCCATGGGCTGCAAATGCTTCGGACCATT...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACACATCAGCCTGCAGGTaGGAGAGCACCAGCTCCAAC +
Preference number: 5 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDTSACR*ESTSSN
Trigger: GTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATGT...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGAGTAGAGTCTTGGCATaGGCTGAGTCGATGACCAGC +
Preference number: 5 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWSRVLA*AESMTS
Trigger: GCTGGTCATCGACTCAGCCAATGCCAAGACTCTACT...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGATGTTTGGCCCCGCCTaGATGTTGCCTTTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWMFGPA*MLPFSG
Trigger: CCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACAT...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 90 bp GGCTGCTCTGGCTGCTGTCCTGCACCGACCTTTGAATCAGGTCCTTaGAATACAAGCTGCAGGAAGCTAGAACATTTTGGTGGACTTCAA +
Preference number: 5 (lower is better)
Translates to: GCSGCCPAPTFESGP*NTSCRKLEHFGGLQ
Trigger: TTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGACAGCAGCCAGAGCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 90 bp CATCATAGACGAGACTATTGTGGCGACAACGAGGGACAGTCATTCTaGAGACCAGGTTCCAGTTATCCAACAGGGACATGTAGCACCAGA +
Preference number: 5 (lower is better)
Translates to: HHRRDYCGDNEGQSF*RPGSSYPTGTCSTR
Trigger: TCTGGTGCTACATGTCCCTGTTGGATAACTGGAACCTGGTCTCCAGAATGACTGTCCCTCGTTGTCGCCACAATAGTCTCGTCTATGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCTTGGGCTGGTCGTGAGTCCTaGAGACTGATTGTCAGCTTT +
Preference number: 5 (lower is better)
Translates to: NHVVWHSPHWTCPIDLSWAGRES*RLIVSF
Trigger: AAAGCTGACAATCAGTCTCAAGGACTCACGACCAGC...CCAAGACAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTGGCCCTGTGCCTGGATaGTCGCTCTCCCTCATCTGT +
Preference number: 5 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPGPVPG*SLSLIC
Trigger: ACAGATGAGGGAGAGCGACAATCCAGGCACAGGGCC...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGGCCTCGAGTAGAGTCTaGGCATTGGCTGAGTCGATG +
Preference number: 5 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLASSRV*ALAESM
Trigger: CATCGACTCAGCCAATGCCAAGACTCTACTCGAGGC...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACTTGTCCTCGGCCTTGGTATaGAGGCTGTCATTGGAGACG +
Preference number: 5 (lower is better)
Translates to: KDNHVVWHSPHWTCPIDLSSALV*RLSLET
Trigger: CGTCTCCAATGACAGCCTCAATACCAAGGCCGAGGA...CAAGTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATACCAGCTCCTCGGCCTaGGTATTGAGGCTGTCATTG +
Preference number: 5 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHTSSSA*VLRLSL
Trigger: CAATGACAGCCTCAATACCAAGGCCGAGGAGCTGGT...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGCATGCCAAGGGGTACCACTaGTTGTTCTGTGGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: LCFVGLSLALKDNHVVWHAKGYH*LFCGFQ
Trigger: CTGGAACCCACAGAACAACAAGTGGTACCCCTTGGC...ATGCCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGCATGGGCCGAGTCTGTaGTGGGCGGCCCATTGGTGG +
Preference number: 5 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVHGPSL*WAAHWW
Trigger: CCACCAATGGGCCGCCCACAACAGACTCGGCCCATG...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTAGCACTCCCAGACAGTaGCTGGCAGTCAGCTGCTTC +
Preference number: 5 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPSTPRQ*LAVSCF
Trigger: GAAGCAGCTGACTGCCAGCAACTGTCTGGGAGTGCT...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTGAAAGATAACCATGTTGTGTGGCATTCGCCTCACTGGACTTGTCCCATAGACATGTTTGGCCCCGCCTaGATGTTGCCTTTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: LKDNHVVWHSPHWTCPIDMFGPA*MLPFSG
Trigger: CCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACAT...GTCTATGGGACAAGTCCAGTGAGGCGAATGCCACACAACATGGTTATCTTTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp CGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGTGTGGTGCTTTCGCTCTGCGTaGCTGGTTCAATTCCTTCAA +
Preference number: 5 (lower is better)
Translates to: RLCFVGLSLALKDNHVVWCFRSA*LVQFLQ
Trigger: TTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCA...CCACACAACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GTTTCTCGATTGTGTTTTGTGGGCCTCTCGTTGGCGTTGAAAGATAACCATGTTGCTGGTCGTGAGTCCTaGAGACTGATTGTCAGCTTT +
Preference number: 5 (lower is better)
Translates to: VSRLCFVGLSLALKDNHVAGRES*RLIVSF
Trigger: AAAGCTGACAATCAGTCTCAAGGACTCACGACCAGC...AACATGGTTATCTTTCAACGCCAACGAGAGGCCCACAAAACACAATCGAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp AAAGCAAGCTGTGGGGCTTTTACATGCTGTGAGAAGAAGAACATAGGAGCTCAGGTCCTGCACCGACCTTaGAATCAGGTCCTTGAAATA +
Preference number: 5 (lower is better)
Translates to: KASCGAFTCCEKKNIGAQVLHRP*NQVLEI
Trigger: TATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGAC...CTGAGCTCCTATGTTCTTCTTCTCACAGCATGTAAAAGCCCCACAGCTTGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTAGTAGAGTCTTGGCATaGGCTGAGTCGATGACCAGC +
Preference number: 5 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPSRVLA*AESMTS
Trigger: GCTGGTCATCGACTCAGCCAATGCCAAGACTCTACT...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp CCTTCAACAACAATTTTCAGGTCTGTAAATGCTTTCGCTCTGCGTTaGTGGTTCAATTCCTTCAACATTTCTTTAGGGTGCCCTGGGTCG +
Preference number: 5 (lower is better)
Translates to: PSTTIFRSVNAFALR*WFNSFNISLGCPGS
Trigger: CGACCCAGGGCACCCTAAAGAAATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCATTTACAGACCTGAAAATTGTTGTTGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGCTCTCCCTCATCTGTTaGGAGGGCGGCTCATCAGTG +
Preference number: 5 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVLSLIC*EGGSSV
Trigger: CACTGATGAGCCGCCCTCCAAACAGATGAGGGAGAG...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTAATGGTCCGAAGCATTaGCAGCCCATGGGCCGAGTC +
Preference number: 5 (lower is better)
Translates to: STFNVENIRNVSAVSFSINGPKH*QPMGRV
Trigger: GACTCGGCCCATGGGCTGCAAATGCTTCGGACCATT...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GGGTCCTCTCTAATCATCCAAACCTACATCTGTAGAAGGATACACACTCTTGATTGCTTTCGCTCTGCGTaGCTGGTTCAATTCCTTCAA +
Preference number: 5 (lower is better)
Translates to: GSSLIIQTYICRRIHTLDCFRSA*LVQFLQ
Trigger: TTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCA...ATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGAGAGGACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp CTATTTTCTTTAATGAAGATACTGTTTATCACACAGGAGGTACTTCCCCTGATTACATCAGCCTGCAGGTaGGAGAGCACCAGCTCCAAC +
Preference number: 5 (lower is better)
Translates to: LFSLMKILFITQEVLPLITSACR*ESTSSN
Trigger: GTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATGT...AATCAGGGGAAGTACCTCCTGTGTGATAAACAGTATCTTCATTAAAGAAAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp TCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTAGCACTCCCAGACAGTaGCTGGCAGTCAGCTGCTTC +
Preference number: 5 (lower is better)
Translates to: STFNVENIRNVSAVSFSISTPRQ*LAVSCF
Trigger: GAAGCAGCTGACTGCCAGCAACTGTCTGGGAGTGCT...AATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGACCAGCTCCTCGGCCTaGGTATTGAGGCTGTCATTG +
Preference number: 5 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVTSSSA*VLRLSL
Trigger: CAATGACAGCCTCAATACCAAGGCCGAGGAGCTGGT...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp GAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGTTTTGTGGGCCTTTGATCAGCTCTTCGTaGTCCACCACATTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: ENIRNVSAVSFSIVFCGPLISSS*STTLSR
Trigger: TCTGCTCAATGTGGTGGACAACGAAGAGCTGATCAA...AGGCCCACAAAACACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp CTATTTTCTTTAATGAAGATACTGTTTATCACACAGGAGGTACTTCCCCTGATTTCCTCGGCCTTGGTATaGAGGCTGTCATTGGAGACG +
Preference number: 5 (lower is better)
Translates to: LFSLMKILFITQEVLPLISSALV*RLSLET
Trigger: CGTCTCCAATGACAGCCTCAATACCAAGGCCGAGGA...AATCAGGGGAAGTACCTCCTGTGTGATAAACAGTATCTTCATTAAAGAAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp ACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGATTGTGAAGGGGTACCACTTGTaGTTCTGTGGGTTCCAGCAG +
Preference number: 5 (lower is better)
Translates to: TFNVENIRNVSAVSFSIVKGYHL*FCGFQQ
Trigger: CTGCTGGAACCCACAGAACAACAAGTGGTACCCCTT...CACAATCGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS-3UTR CAA 90 bp ATAGTTAATAATGGAGCTGGCAGACTGTTTTTATCACAGATTATCACCTTCCCCTTGATCAGCTCTTCGTaGTCCACCACATTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: IVNNGAGRLFLSQIITFPLISSS*STTLSR
Trigger: TCTGCTCAATGTGGTGGACAACGAAGAGCTGATCAA...GGGGAAGGTGATAATCTGTGATAAAAACAGTCTGCCAGCTCCATTATTAACTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS CCA 90 bp ATCAGGTCCTTGAAATACAAGCTGCAGGAAGCTAGAACATTTTGGTaGACTTCAAACTCTCTGCCTTCAACAACAATTTTCAGGTCTGTA +
Preference number: 5 (lower is better)
Translates to: IRSLKYKLQEARTFW*TSNSLPSTTIFRSV
Trigger: TACAGACCTGAAAATTGTTGTTGAAGGCAGAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTTTCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGGTTGCTGGGTCCTTCTaGATCCACTTGATGACAGTC +
Preference number: 5 (lower is better)
Translates to: FSTFNVENIRNVSAVSFSVAGSF*IHLMTV
Trigger: GACTGTCATCAAGTGGATCAAGAAGGACCCAGCAAC...CGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 90 bp GACTTCAAACTCTCTGCCTTCAACAACAATTTTCAGGTCTGTAAATaGTTTCGCTCTGCGTTGCTGGTTCAATTCCTTCAACATTTCTTT +
Preference number: 5 (lower is better)
Translates to: DFKLSAFNNNFQVCK*FRSALLVQFLQHFF
Trigger: AAAGAAATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCATTTACAGACCTGAAAATTGTTGTTGAAGGCAGAGAGTTTGAAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTTTCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGGTCCTGCACCGACCTTaGAATCAGGTCCTTGAAATA +
Preference number: 5 (lower is better)
Translates to: FSTFNVENIRNVSAVSFSVLHRP*NQVLEI
Trigger: TATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGAC...CGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS-3UTR CAA 90 bp TTTTCTACATTCAATGTAGAGAATATTCGAAATGTTAGCGCAGTGAGTTTCTCGCATGCTTCTGATGACTaGATCAGCTCTTCGTTGTCC +
Preference number: 5 (lower is better)
Translates to: FSTFNVENIRNVSAVSFSHASDD*ISSSLS
Trigger: GGACAACGAAGAGCTGATCAAGTCATCAGAAGCATG...CGAGAAACTCACTGCGCTAACATTTCGAATATTCTCTACATTGAATGTAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GCAGGGGCCCTGCCATGTGGCCGTTGCCCACAGGGGTaGGTCCCGGGCGGGATACCTGCCCTACTCCAGGCA +
Preference number: 6 (lower is better)
Translates to: AGALPCGRCPQG*VPGGIPALLQA
Trigger: TGCCTGGAGTAGGGCAGGTATCCCGCCCGGGACCCACCCCTGTGGGCAACGGCCACATGGCAGGGCCCCTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GCACCGGAGGTGACGCTGCAGACGCTGGTGGCCCCGTaGGTCCCATTGACGCTCCACTCACGGCGGTCCCAG +
Preference number: 6 (lower is better)
Translates to: APEVTLQTLVAP*VPLTLHSRRSQ
Trigger: CTGGGACCGCCGTGAGTGGAGCGTCAATGGGACCCACGGGGCCACCAGCGTCTGCAGCGTCACCTCCGGTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp GTGACGCTGCAGACGCTGGTGGCCCCGTGGGTCCCATaGACGCTCCACTCACGGCGGTCCCAGCCTATGCGG +
Preference number: 6 (lower is better)
Translates to: VTLQTLVAPWVP*TLHSRRSQPMR
Trigger: CCGCATAGGCTGGGACCGCCGTGAGTGGAGCGTCAATGGGACCCACGGGGCCACCAGCGTCTGCAGCGTCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp CCGTTGCCCACAGGGGTGGGTCCCGGGCGGGATACCTaGCCTACTCCAGGCAAAGTGGATACTGCCAGGGGC +
Preference number: 6 (lower is better)
Translates to: PLPTGVGPGRDT*PTPGKVDTARG
Trigger: GCCCCTGGCAGTATCCACTTTGCCTGGAGTAGGGCAGGTATCCCGCCCGGGACCCACCCCTGTGGGCAACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp CACACTGCTCAGCGGTTGGGAGGGCGGCTGTGGGAGTaGGTAGTGGCCTGGTATCAGCGGGAGCTGGGGTCC +
Preference number: 6 (lower is better)
Translates to: HTAQRLGGRLWE*VVAWYQRELGS
Trigger: GGACCCCAGCTCCCGCTGATACCAGGCCACTACTCACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATTGGTaGCAGGAACACTACTGGGGAGAGCTGCGGACGGCT +
Preference number: 6 (lower is better)
Translates to: AHGPSLLWAAHW*QEHYWGELRTA
Trigger: AGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GCAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATTaGTGGCAGGAACACTACTGGGGAGAGCTGCGGACG +
Preference number: 6 (lower is better)
Translates to: AAHGPSLLWAAH*WQEHYWGELRT
Trigger: CGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 90 bp CGAAGCATTTGCAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATaGGTGGCAGGAACACTACTGGGGAGAGCTGCGGACGGCTGGGCT +
Preference number: 6 (lower is better)
Translates to: RSICSPWAESVVGGP*VAGTLLGRAADGWA
Trigger: AGCCCAGCCGTCCGCAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp TTGGAGGGCGGCTCATCAGTGTCCCAGGGCGTGGACTaGTTGACAGGCGTCTGCCCCCATCGGATGCTGGTC +
Preference number: 6 (lower is better)
Translates to: LEGGSSVSQGVD*LTGVCPHRMLV
Trigger: GACCAGCATCCGATGGGGGCAGACGCCTGTCAATCAGTCCACGCCCTGGGACACTGATGAGCCGCCCTCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp CGGCCACCTCGGGGAAGATCTGCAGCGCGAAGGCCTTaGCCATGTGGTAGAGCTCACTGCACTGCATGGCCT +
Preference number: 6 (lower is better)
Translates to: RPPRGRSAARRP*PCGRAHCTAWP
Trigger: AGGCCATGCAGTGCAGTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGTGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp GTTGTTCTGTGGGTTCCAGCAGGTGACAGCCACCAGTaGGCGCTGGGTCATCCCAACCATCTGACGGCCCCC +
Preference number: 6 (lower is better)
Translates to: VVLWVPAGDSHQ*ALGHPNHLTAP
Trigger: GGGGGCCGTCAGATGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTGCTGGAACCCACAGAACAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS TCA 72 bp GGACATGTAGCACCAGACATCAGCCAGCGTCACCCCTaGTTCCATACCACCTGCAGAGAGGCGGGGCCGGGT +
Preference number: 6 (lower is better)
Translates to: GHVAPDISQRHP*FHTTCREAGPG
Trigger: ACCCGGCCCCGCCTCTCTGCAGGTGGTATGGAATCAGGGGTGACGCTGGCTGATGTCTGGTGCTACATGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218384.2
CDS GCA 72 bp CATACAGGGCCTGAGCAGGCATGTTCACCACCACACTaGTCAGCGGTTGGGAGGGCGGCTGTGGGAGTGAGT +
Preference number: 6 (lower is better)
Translates to: HTGPEQACSPPH*SAVGRAAVGVS
Trigger: ACTCACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGTGGTGGTGAACATGCCTGCTCAGGCCCTGTATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GCCCTGTGCCTGGATTGTCGCTCTCCCTCATCTGTTTaGAGGGCGGCTCATCAGTGTCCCAGGGCGTGGACT +
Preference number: 6 (lower is better)
Translates to: ALCLDCRSPSSV*RAAHQCPRAWT
Trigger: AGTCCACGCCCTGGGACACTGATGAGCCGCCCTCCAAACAGATGAGGGAGAGCGACAATCCAGGCACAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 90 bp CCACTCCAATGGTCCGAAGCATTTGCAGCCCATGGGCCGAGTCTGTaGTGGGCGGCCCATTGGTGGCAGGAACACTACTGGGGAGAGCTG +
Preference number: 6 (lower is better)
Translates to: PLQWSEAFAAHGPSL*WAAHWWQEHYWGEL
Trigger: CAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp CGTGTTGGTCTGTGGCACATAGGACTGGAGGACACCTaGCGCTCGGCCTGCCTCATTCACGCCACCAAACAC +
Preference number: 6 (lower is better)
Translates to: RVGLWHIGLEDT*RSACLIHATKH
Trigger: GTGTTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCACAGACCAACACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp TCCGAAGCATTTGCAGCCCATGGGCCGAGTCTGTTGTaGGCGGCCCATTGGTGGCAGGAACACTACTGGGGA +
Preference number: 6 (lower is better)
Translates to: SEAFAAHGPSLL*AAHWWQEHYWG
Trigger: TCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp TTCCCCACTCCAATGGTCCGAAGCATTTGCAGCCCATaGGCCGAGTCTGTTGTGGGCGGCCCATTGGTGGCA +
Preference number: 6 (lower is better)
Translates to: FPTPMVRSICSP*AESVVGGPLVA
Trigger: TGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp CGCCACCAAACACGTAGATTTTGCCACCACACACAGTaGCCGCTGCCGAATGTACCGCCTTGGGCAGAGGGG +
Preference number: 6 (lower is better)
Translates to: RHQTRRFCHHTQ*PLPNVPPWAEG
Trigger: CCCCTCTGCCCAAGGCGGTACATTCGGCAGCGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 90 bp TGGGTCGGTGAACTCATACTTCCCCACTCCAATGGTCCGAAGCATTaGCAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCATTGGTGGC +
Preference number: 6 (lower is better)
Translates to: WVGELILPHSNGPKH*QPMGRVCCGRPIGG
Trigger: GCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAAGTATGAGTTCACCGACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp GCAGGTTGGAGAGCACCAGCTCCAACTTCTCCCGGCTaGTCTGGCTGCTGTCCTGCACCGACCTTTGAATCA +
Preference number: 6 (lower is better)
Translates to: AGWRAPAPTSPG*SGCCPAPTFES
Trigger: TGATTCAAAGGTCGGTGCAGGACAGCAGCCAGAGCAGCCGGGAGAAGTTGGAGCTGGTGCTCTCCAACCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp ATGGATGAACGGGAGGCGGACGGCAGCCAGGAGCTCTaGTGCATACTGTGCACGTGTTGCTGGGTCCTTCTT +
Preference number: 6 (lower is better)
Translates to: MDEREADGSQEL*CILCTCCWVLL
Trigger: AAGAAGGACCCAGCAACACGTGCACAGTATGCAGCAGAGCTCCTGGCTGCCGTCCGCCTCCCGTTCATCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp TCCATGTGTTGGTTGTGGGCTCGTAGGCTTCCATGTTaGCCAGGGCTGGTCCCTCACTGCTCACGATGCCTC +
Preference number: 6 (lower is better)
Translates to: SMCWLWARRLPC*PGLVPHCSRCL
Trigger: GAGGCATCGTGAGCAGTGAGGGACCAGCCCTGGGCAACATGGAAGCCTACGAGCCCACAACCAACACATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp CATTGGGGACTCAATGAAGCTCCACGTGTTGGTCTGTaGCACATAGGACTGGAGGACACCTGCCGCTCGGCC +
Preference number: 6 (lower is better)
Translates to: HWGLNEAPRVGL*HIGLEDTCRSA
Trigger: GGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCACAGACCAACACGTGGAGCTTCATTGAGTCCCCAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GGTTGTGGGCTCGTAGGCTTCCATGTTGCCCAGGGCTaGTCCCTCACTGCTCACGATGCCTCCAGTAGCATA +
Preference number: 6 (lower is better)
Translates to: GCGLVGFHVAQG*SLTAHDASSSI
Trigger: TATGCTACTGGAGGCATCGTGAGCAGTGAGGGACCAGCCCTGGGCAACATGGAAGCCTACGAGCCCACAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp AGGGCATGTGGGGTAAGAGGGTCCATGTGTTGGTTGTaGGCTCGTAGGCTTCCATGTTGCCCAGGGCTGGTC +
Preference number: 6 (lower is better)
Translates to: RACGVRGSMCWL*ARRLPCCPGLV
Trigger: GACCAGCCCTGGGCAACATGGAAGCCTACGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp CAGGACAGGGCATGTGGGGTAAGAGGGTCCATGTGTTaGTTGTGGGCTCGTAGGCTTCCATGTTGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: QDRACGVRGSMC*LWARRLPCCPG
Trigger: CCCTGGGCAACATGGAAGCCTACGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCTGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp AGGCGTCTGCCCCCATCGGATGCTGGTCGTGAGTCCTaGAGACTGATTGTCAGCTTTGGAGATGCCGGGAGC +
Preference number: 6 (lower is better)
Translates to: RRLPPSDAGRES*RLIVSFGDAGS
Trigger: GCTCCCGGCATCTCCAAAGCTGACAATCAGTCTCAAGGACTCACGACCAGCATCCGATGGGGGCAGACGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp GAACTCATACTTCCCCACTCCAATGGTCCGAAGCATTaGCAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCC +
Preference number: 6 (lower is better)
Translates to: ELILPHSNGPKH*QPMGRVCCGRP
Trigger: GGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAAGTATGAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp GACAGGGCATGTGGGGTAAGAGGGTCCATGTGTTGGTaGTGGGCTCGTAGGCTTCCATGTTGCCCAGGGCTG +
Preference number: 6 (lower is better)
Translates to: DRACGVRGSMCW*WARRLPCCPGL
Trigger: CAGCCCTGGGCAACATGGAAGCCTACGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 90 bp CTGATTGACAGGCGTCTGCCCCCATCGGATGCTGGTCGTGAGTCCTaGAGACTGATTGTCAGCTTTGGAGATGCCGGGAGCCTTGGTGGT +
Preference number: 6 (lower is better)
Translates to: LIDRRLPPSDAGRES*RLIVSFGDAGSLGG
Trigger: ACCACCAAGGCTCCCGGCATCTCCAAAGCTGACAATCAGTCTCAAGGACTCACGACCAGCATCCGATGGGGGCAGACGCCTGTCAATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp AGGGGTACCACTTGTTGTTCTGTGGGTTCCAGCAGGTaGCAGCCACCAGTGAGCGCTGGGTCATCCCAACCA +
Preference number: 6 (lower is better)
Translates to: RGTTCCSVGSSR*QPPVSAGSSQP
Trigger: TGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTGCTGGAACCCACAGAACAACAAGTGGTACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS GCA 72 bp AACTCATACTTCCCCACTCCAATGGTCCGAAGCATTTaGAGCCCATGGGCCGAGTCTGTTGTGGGCGGCCCA +
Preference number: 6 (lower is better)
Translates to: NSYFPTPMVRSI*SPWAESVVGGP
Trigger: TGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTTCGGACCATTGGAGTGGGGAAGTATGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp CGCTGCCGAATGTACCGCCTTGGGCAGAGGGGCTACTaGCTCCCATTGGTTAGTGATAGTGTCGTACCTCTC +
Preference number: 6 (lower is better)
Translates to: RCRMYRLGQRGY*LPLVSDSVVPL
Trigger: GAGAGGTACGACACTATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCCAAGGCGGTACATTCGGCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp GGCCTGCCTCATTCACGCCACCAAACACGTAGATTTTaGCACCACACACAGTGGCCGCTGCCGAATGTACCG +
Preference number: 6 (lower is better)
Translates to: GLPHSRHQTRRF*HHTQWPLPNVP
Trigger: CGGTACATTCGGCAGCGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTGAATGAGGCAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp TGGCACATAGGACTGGAGGACACCTGCCGCTCGGCCTaGCTCATTCACGCCACCAAACACGTAGATTTTGCC +
Preference number: 6 (lower is better)
Translates to: WHIGLEDTCRSA*LIHATKHVDFA
Trigger: GGCAAAATCTACGTGTTTGGTGGCGTGAATGAGGCAGGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp ACTCTAGCAGTAGCTCCAGGACATCAGCCTGCAGGTTaGAGAGCACCAGCTCCAACTTCTCCCGGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: TLAVAPGHQPAG*RAPAPTSPGCS
Trigger: AGAGCAGCCGGGAGAAGTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATGTCCTGGAGCTACTGCTAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp ATGAAGTCATCTTTAGAGATGCTGAGGATCTCCTCCTaGGCGGCCACCTCGGGGAAGATCTGCAGCGCGAAG +
Preference number: 6 (lower is better)
Translates to: MKSSLEMLRISS*AATSGKICSAK
Trigger: CTTCGCGCTGCAGATCTTCCCCGAGGTGGCCGCCCAGGAGGAGATCCTCAGCATCTCTAAAGATGACTTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp TGTACCGCCTTGGGCAGAGGGGCTACTGCCTCCCATTaGTTAGTGATAGTGTCGTACCTCTCCACATGGTCC +
Preference number: 6 (lower is better)
Translates to: CTALGRGATASH*LVIVSYLSTWS
Trigger: GGACCATGTGGAGAGGTACGACACTATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCCAAGGCGGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp ACAACACAGCCGTGTCTGAACACAGGACAGGGCATGTaGGGTAAGAGGGTCCATGTGTTGGTTGTGGGCTCG +
Preference number: 6 (lower is better)
Translates to: TTQPCLNTGQGM*GKRVHVLVVGS
Trigger: CGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCTGTCCTGTGTTCAGACACGGCTGTGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 90 bp TCACTGCACTGCATGGCCTCAGCCATGGCCAGCACTCCCAGACAGTaGCTGGCAGTCAGCTGCTTCTCTAGAAAGGACACACAGACTTTG +
Preference number: 6 (lower is better)
Translates to: SLHCMASAMASTPRQ*LAVSCFSRKDTQTL
Trigger: CAAAGTCTGTGTGTCCTTTCTAGAGAAGCAGCTGACTGCCAGCAACTGTCTGGGAGTGCTGGCCATGGCTGAGGCCATGCAGTGCAGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp TCCCGGCTGCTCTGGCTGCTGTCCTGCACCGACCTTTaGATCAGGTCCTTGAAATACAAGCTGCAGGAAGCT +
Preference number: 6 (lower is better)
Translates to: SRLLWLLSCTDL*IRSLKYKLQEA
Trigger: AGCTTCCTGCAGCTTGTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGACAGCAGCCAGAGCAGCCGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp CCGCCTCGAGTAGAGTCTTGGCATTGGCTGAGTCGATaGCCAGCGACCCCGTGTAGACAAACTCTAGCAGTA +
Preference number: 6 (lower is better)
Translates to: PPRVESWHWLSR*PATPCRQTLAV
Trigger: TACTGCTAGAGTTTGTCTACACGGGGTCGCTGGTCATCGACTCAGCCAATGCCAAGACTCTACTCGAGGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp ATGTACCGCCTTGGGCAGAGGGGCTACTGCCTCCCATaGGTTAGTGATAGTGTCGTACCTCTCCACATGGTC +
Preference number: 6 (lower is better)
Translates to: MYRLGQRGYCLP*VSDSVVPLHMV
Trigger: GACCATGTGGAGAGGTACGACACTATCACTAACCAATGGGAGGCAGTAGCCCCTCTGCCCAAGGCGGTACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp CTGAGAGGTAGATGTTGTCCCCAGCACTCACTACACTaGAGAACTCGCGGTCATAGAAAGGCAGCGAGGCCA +
Preference number: 6 (lower is better)
Translates to: LRGRCCPQHSLH*RTRGHRKAARP
Trigger: TGGCCTCGCTGCCTTTCTATGACCGCGAGTTCTTCAGTGTAGTGAGTGCTGGGGACAACATCTACCTCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020958.9
CDS CCA 72 bp CACGGCACTGCAGAACTGCCGAGAGTGATTCATGTTTaGCCCCGCCTTGATGTTGCCTTTTTCTGGGTCGTA +
Preference number: 6 (lower is better)
Translates to: HGTAELPRVIHV*PRLDVAFFWVV
Trigger: TACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTGCAGTGCCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp AGAACTGCCGAGAGTGATTCATGTTTGGCCCCGCCTTaGTGTTGCCTTTTTCTGGGTCGTAGATGGTGGTGG +
Preference number: 6 (lower is better)
Translates to: RTAESDSCLAPP*CCLFLGRRWWW
Trigger: CCACCACCATCTACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGGCAGTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp ACACACAGACTTTGCAGAAGGTGTGAAACTGGAACTTaGTGGCCGCCTCGAGTAGAGTCTTGGCATTGGCTG +
Preference number: 6 (lower is better)
Translates to: THRLCRRCETGT*WPPRVESWHWL
Trigger: CAGCCAATGCCAAGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACACCTTCTGCAAAGTCTGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp CACAGACTTTGCAGAAGGTGTGAAACTGGAACTTGCTaGCCGCCTCGAGTAGAGTCTTGGCATTGGCTGAGT +
Preference number: 6 (lower is better)
Translates to: HRLCRRCETGTC*PPRVESWHWLS
Trigger: ACTCAGCCAATGCCAAGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACACCTTCTGCAAAGTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp ATTCATGTTTGGCCCCGCCTTGATGTTGCCTTTTTCTaGGTCGTAGATGGTGGTGGCTCTGGCATAAGCTCC +
Preference number: 6 (lower is better)
Translates to: IHVWPRLDVAFF*VVDGGGSGISS
Trigger: GGAGCTTATGCCAGAGCCACCACCATCTACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp CGAGACTATTGTGGCGACAACGAGGGACAGTCATTCTaGAGACCAGGTTCCAGTTATCCAACAGGGACATGT +
Preference number: 6 (lower is better)
Translates to: RDYCGDNEGQSF*RPGSSYPTGTC
Trigger: ACATGTCCCTGTTGGATAACTGGAACCTGGTCTCCAGAATGACTGTCCCTCGTTGTCGCCACAATAGTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp GCCTCATTGACCAGGTCCCGACATGCTTCTGATGACTaGATCAGCTCTTCGTTGTCCACCACATTGAGCAGA +
Preference number: 6 (lower is better)
Translates to: ASLTRSRHASDD*ISSSLSTTLSR
Trigger: TCTGCTCAATGTGGTGGACAACGAAGAGCTGATCAAGTCATCAGAAGCATGTCGGGACCTGGTCAATGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp GAGGGTGACAGCAGGTGCATATTTGTTGTCTATCATTaGGGACTCAATGAAGCTCCACGTGTTGGTCTGTGG +
Preference number: 6 (lower is better)
Translates to: EGDSRCIFVVYH*GLNEAPRVGLW
Trigger: CCACAGACCAACACGTGGAGCTTCATTGAGTCCCCAATGATAGACAACAAATATGCACCTGCTGTCACCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp GGCTGCTGTCCTGCACCGACCTTTGAATCAGGTCCTTaGAATACAAGCTGCAGGAAGCTAGAACATTTTGGT +
Preference number: 6 (lower is better)
Translates to: GCCPAPTFESGP*NTSCRKLEHFG
Trigger: ACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGACAGCAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS TCA 72 bp CAGGTGCATATTTGTTGTCTATCATTGGGGACTCAATaGAGCTCCACGTGTTGGTCTGTGGCACATAGGACT +
Preference number: 6 (lower is better)
Translates to: QVHICCLSLGTQ*SSTCWSVAHRT
Trigger: AGTCCTATGTGCCACAGACCAACACGTGGAGCTTCATTGAGTCCCCAATGATAGACAACAAATATGCACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 90 bp GCCTTCAACAACAATTTTCAGGTCTGTAAATGCTTTCGCTCTGCGTaGCTGGTTCAATTCCTTCAACATTTCTTTAGGGTGCCCTGGGTC +
Preference number: 6 (lower is better)
Translates to: AFNNNFQVCKCFRSA*LVQFLQHFFRVPWV
Trigger: GACCCAGGGCACCCTAAAGAAATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCATTTACAGACCTGAAAATTGTTGTTGAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp CAGGATGAACACAAAGCCATTGAGGGTGACAGCAGGTaGATATTTGTTGTCTATCATTGGGGACTCAATGAA +
Preference number: 6 (lower is better)
Translates to: QDEHKAIEGDSR*IFVVYHWGLNE
Trigger: TTCATTGAGTCCCCAATGATAGACAACAAATATGCACCTGCTGTCACCCTCAATGGCTTTGTGTTCATCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS GCA 72 bp CTCTCTGCCTTCAACAACAATTTTCAGGTCTGTAAATaGTTTCGCTCTGCGTTGCTGGTTCAATTCCTTCAA +
Preference number: 6 (lower is better)
Translates to: LSAFNNNFQVCK*FRSALLVQFLQ
Trigger: TTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCATTTACAGACCTGAAAATTGTTGTTGAAGGCAGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp TCCTTGAAATACAAGCTGCAGGAAGCTAGAACATTTTaGTGGACTTCAAACTCTCTGCCTTCAACAACAATT +
Preference number: 6 (lower is better)
Translates to: SLKYKLQEARTF*WTSNSLPSTTI
Trigger: AATTGTTGTTGAAGGCAGAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CAA 72 bp AACAATTTTCAGGTCTGTAAATGCTTTCGCTCTGCGTaGCTGGTTCAATTCCTTCAACATTTCTTTAGGGTG +
Preference number: 6 (lower is better)
Translates to: NNFQVCKCFRSA*LVQFLQHFFRV
Trigger: CACCCTAAAGAAATGTTGAAGGAATTGAACCAGCAACGCAGAGCGAAAGCATTTACAGACCTGAAAATTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2
CDS CCA 72 bp TTGAAATACAAGCTGCAGGAAGCTAGAACATTTTGGTaGACTTCAAACTCTCTGCCTTCAACAACAATTTTC +
Preference number: 6 (lower is better)
Translates to: LKYKLQEARTFW*TSNSLPSTTIF
Trigger: GAAAATTGTTGTTGAAGGCAGAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020958.9
ENSMUST00000218384.2