RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLHL20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026705

Ensembl transcript IDs: ENSMUST00000111611.8, ENSMUST00000117467.7, ENSMUST00000195584.2

Found 167 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGAAGGCTGAGAGCCACCGTTGTTCATGGAATTACACACAGTTGTaGGCTGCCAGATATAAGTGCTGGGAACTGAACTCGGGTCCTCTG +
Preference number: 1 (lower is better)
Translates to: RKAESHRCSWNYTQL*AARYKCWELNSGPL
Trigger: CAGAGGACCCGAGTTCAGTTCCCAGCACTTATATCTGGCAGCTCACAACTGTGTGTAATTCCATGAACAACGGTGGCTCTCAGCCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111611.8
3UTR GCA 90 bp AAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTaGAAAGGCGGCGTTTTGCAGGTGAGCTCCGTCCTTAGACGGGTA +
Preference number: 1 (lower is better)
Translates to: KAKNKYSSAQSGKAL*KGGVLQVSSVLRRV
Trigger: TACCCGTCTAAGGACGGAGCTCACCTGCAAAACGCCGCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR GCA 90 bp AGAGACCTAGATACATGTGGCAGAAACTTCATCACTGGCAATCTCTaGAGATGTATAGATATGTCTAAAAGGAATAACATCAGGTCACAC +
Preference number: 1 (lower is better)
Translates to: RDLDTCGRNFITGNL*RCIDMSKRNNIRSH
Trigger: GTGTGACCTGATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTTTCTGCCACATGTATCTAGGTCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195584.2
3UTR-3UTR TCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGTTAGACGGGTATTTCTaGATGTTGAGGCACCGGCAA +
Preference number: 2 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSLDGYF*MLRHRQ
Trigger: TTGCCGGTGCCTCAACATTCAGAAATACCCGTCTAA...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR CAA 90 bp ATTAAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATaGTGCAAAGGCGGCGTTTTGCAGGTGAGCTCCGTCCTTAGACGG +
Preference number: 2 (lower is better)
Translates to: IKAKNKYSSAQSGKA*CKGGVLQVSSVLRR
Trigger: CCGTCTAAGGACGGAGCTCACCTGCAAAACGCCGCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR CAA 90 bp GGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTaGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACATC +
Preference number: 2 (lower is better)
Translates to: GVVLLNMYSNMKISP*VYIRVTSESPGQNI
Trigger: GATGTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR-3UTR TCA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTAGACGGGTATTTCTaGATGTTGAGGCACCGGCAA +
Preference number: 2 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPLDGYF*MLRHRQ
Trigger: TTGCCGGTGCCTCAACATTCAGAAATACCCGTCTAA...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR-3UTR GCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGATCACTGGCAATCTCTaGAGATGTATAGATATGTCT +
Preference number: 2 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWITGNL*RCIDMS
Trigger: AGACATATCTATACATCTGCAGAGATTGCCAGTGAT...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR-3UTR GCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGATCACTGGCAATCTCTaGAGATGTATAGATATGTCT +
Preference number: 2 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSITGNL*RCIDMS
Trigger: AGACATATCTATACATCTGCAGAGATTGCCAGTGAT...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR-3UTR CCA 90 bp TCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCACCTTCACTTCATCACTaGCAATCTCTGCAGATGTAT +
Preference number: 2 (lower is better)
Translates to: SNMKISPLVYIRVTSESPPSLHH*QSLQMY
Trigger: ATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGG...TGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
3UTR-3UTR CCA 90 bp GTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGTTTTACCTTCATCACTaGCAATCTCTGCAGATGTAT +
Preference number: 2 (lower is better)
Translates to: VLLNMYSNMKISPLVYIRFYLHH*QSLQMY
Trigger: ATACATCTGCAGAGATTGCCAGTGATGAAGGTAAAA...CCTTATATACACCAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111611.8
3UTR GCA 72 bp AATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTaGAAAGGCGGCGTTTTGCAGGTGAGCTCCGTCCTT +
Preference number: 3 (lower is better)
Translates to: NKYSSAQSGKAL*KGGVLQVSSVL
Trigger: AAGGACGGAGCTCACCTGCAAAACGCCGCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR TCA 72 bp GAGAGCCACCGTTGTTCATGGAATTACACACAGTTGTaGGCTGCCAGATATAAGTGCTGGGAACTGAACTCG +
Preference number: 3 (lower is better)
Translates to: ESHRCSWNYTQL*AARYKCWELNS
Trigger: CGAGTTCAGTTCCCAGCACTTATATCTGGCAGCTCACAACTGTGTGTAATTCCATGAACAACGGTGGCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111611.8
3UTR GCA 72 bp AGTGAAAATCAGAATTCACGGCTGGAGAAAGTTCACTaGTCCTTGGTGGCCAAGAGGAGACAGGAAAGAAAG +
Preference number: 3 (lower is better)
Translates to: SENQNSRLEKVH*SLVAKRRQERK
Trigger: CTTTCTTTCCTGTCTCCTCTTGGCCACCAAGGAGCAGTGAACTTTCTCCAGCCGTGAATTCTGATTTTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR CCA 72 bp AACATCCAGTGTAAAGTGAAAATCAGAATTCACGGCTaGAGAAAGTTCACTGCTCCTTGGTGGCCAAGAGGA +
Preference number: 3 (lower is better)
Translates to: NIQCKVKIRIHG*RKFTAPWWPRG
Trigger: TCCTCTTGGCCACCAAGGAGCAGTGAACTTTCTCCAGCCGTGAATTCTGATTTTCACTTTACACTGGATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
3UTR GCA 72 bp AGCCACACTCGCCTTCACTTCATCACTGGCAATCTCTaGAGATGTATAGATATGTCTAAAAGGAATAACATC +
Preference number: 3 (lower is better)
Translates to: SHTRLHFITGNL*RCIDMSKRNNI
Trigger: GATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGGCGAGTGTGGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
3UTR GCA 72 bp GATACATGTGGCAGAAACTTCATCACTGGCAATCTCTaGAGATGTATAGATATGTCTAAAAGGAATAACATC +
Preference number: 3 (lower is better)
Translates to: DTCGRNFITGNL*RCIDMSKRNNI
Trigger: GATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTTTCTGCCACATGTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195584.2
CDS-3UTR TCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTGTAGGGGCTGCAGGCTaGCAGGATGACGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRVGAAG*QDDAVG
Trigger: GCCCACCGCGTCATCCTGTCAGCCTGCAGCCCCTAC...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTGGTCAGAGCCTACGGTaGCCACCAGGAACTTGGGAC +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRGQSLR*PPGTWD
Trigger: GTCCCAAGTTCCTGGTGGGCACCGTAGGCTCTGACC...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTTGCAGGCTGACAGGATaGCGCGGTGGGCATATATCT +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRCRLTG*RGGHIS
Trigger: AGATATATGCCCACCGCGTCATCCTGTCAGCCTGCA...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GGAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGGTCATCAAGAACACTaGCCCCGACTCCACATCGCC +
Preference number: 4 (lower is better)
Translates to: GKKAAGGDSRHNSSTATLGHQEH*PRLHIA
Trigger: GGCGATGTGGAGTCGGGGTCAGTGTTCTTGATGACC...GAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGCCGAGGGTGCTTGTCTaGAATATAGGGCATGCGAGC +
Preference number: 4 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSPRVLV*NIGHAS
Trigger: GCTCGCATGCCCTATATTTCAGACAAGCACCCTCGG...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp CAGTGGCCTTCTGAGATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCTGGGGTCTCCAAGGGTaGAGCGGCTTGTTACATCCA +
Preference number: 4 (lower is better)
Translates to: QWPSEMKSDTQRKDPSSVWGLQG*SGLLHP
Trigger: TGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCA...GACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCATCTCAGAAGGCCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTCTCCCCTGTAAACATTaGTCGGAAGTAGGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRLPCKH*SEVGAA
Trigger: TGCAGCCCCTACTTCCGAGCAATGTTTACAGGGGAG...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTATCACTACTTCTGTCTaGCGGCTTTCTGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRITTSV*RLSASS
Trigger: GGAGCTGGCAGAAAGCCGGCAGACAGAAGTAGTGAT...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTTCGGATAGGTTTCCGTaGTCTTGTCCTTGGCCCTTG +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRSDRFP*SCPWPL
Trigger: CAAGGGCCAAGGACAAGACCACGGAAACCTATCCGA...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GGAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGCAGGCAAGAGAGTCTaGACATTGCCCTCTTCCACA +
Preference number: 4 (lower is better)
Translates to: GKKAAGGDSRHNSSTATLAGKRV*TLPSST
Trigger: TGTGGAAGAGGGCAATGTTCAGACTCTCTTGCCTGC...GAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGTGTCTGCCGGCTTTCTaGCAGCTCCCCTGTAAACAT +
Preference number: 4 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWCLPAF*QLPCKH
Trigger: ATGTTTACAGGGGAGCTGGCAGAAAGCCGGCAGACA...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp CAGTGGCCTTCTGAGATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCTGTCTGCCGGCTTTCTaGCAGCTCCCCTGTAAACAT +
Preference number: 4 (lower is better)
Translates to: QWPSEMKSDTQRKDPSSVCLPAF*QLPCKH
Trigger: ATGTTTACAGGGGAGCTGGCAGAAAGCCGGCAGACA...GACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCATCTCAGAAGGCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTGGCATGCGAGCAGGTTaGGGAACCCCTTCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPGMRAG*GTPSGS
Trigger: GCTGCCAGAAGGGGTTCCCCAACCTGCTCGCATGCC...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGTCGGATAGGTTTCCGTaGTCTTGTCCTTGGCCCTTG +
Preference number: 4 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSSDRFP*SCPWPL
Trigger: CAAGGGCCAAGGACAAGACCACGGAAACCTATCCGA...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGCCATTCGCCACTCATTaGTCTGGGGGTCATAGCGTT +
Preference number: 4 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSPFATH*SGGHSV
Trigger: AACGCTATGACCCCCAGACCAATGAGTGGCGAATGG...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGTCGCCTTTTGCTCATTaGAGCTACCATTCGCCACTC +
Preference number: 4 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWSPFAH*SYHSPL
Trigger: GAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGA...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp GGAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGTCTCTCCCTCCCACTaGATAGATCATGTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: GKKAAGGDSRHNSSTATLVSPSH*IDHVLV
Trigger: TACCAGGACATGATCTATGCAGTGGGAGGGAGAGAC...GAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGGACAGGATGACGCGGTaGGCATATATCTTCTTAGCG +
Preference number: 4 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWDRMTR*AYIFLA
Trigger: CGCTAAGAAGATATATGCCCACCGCGTCATCCTGTC...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGGCTTTCTCAGAAGGTTaGTCACTTCCAAGGTTTGCC +
Preference number: 4 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSAFSEG*SLPRFA
Trigger: GGCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGC...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GTTCTATTGTTTTCTCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATGTAGGGGCTGCAGGCTaGCAGGATGACGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: VLLFSPAVQSFEVKALPNVGAAG*QDDAVG
Trigger: GCCCACCGCGTCATCCTGTCAGCCTGCAGCCCCTAC...ATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGAGAAAACAATAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGAGGCCATCACTGCATTaGACACTTGTTCTTCACTCC +
Preference number: 4 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSRPSLH*TLVLHS
Trigger: GGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCT...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp CAGTGGCCTTCTGAGATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCAGGCCATCACTGCATTaGACACTTGTTCTTCACTCC +
Preference number: 4 (lower is better)
Translates to: QWPSEMKSDTQRKDPSSVRPSLH*TLVLHS
Trigger: GGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCT...GACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCATCTCAGAAGGCCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTGGTCATCAAGAACACTaGCCCCGACTCCACATCGCC +
Preference number: 4 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPGHQEH*PRLHIA
Trigger: GGCGATGTGGAGTCGGGGTCAGTGTTCTTGATGACC...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGATCACTTCCAAGGTTTaGCGAGGGTGCTTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWITSKV*RGCLSE
Trigger: TTCAGACAAGCACCCTCGGCAAACCTTGGAAGTGAT...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp CAGTGGCCTTCTGAGATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCGACCCAGGCCATCACTaGATTGAACACTTGTTCTTC +
Preference number: 4 (lower is better)
Translates to: QWPSEMKSDTQRKDPSSVDPGHH*IEHLFF
Trigger: GAAGAACAAGTGTTCAATGCAGTGATGGCCTGGGTC...GACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCATCTCAGAAGGCCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGTGTATTTCTGCCAGCTaGAGGAGGCAAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKCISAS*RRQAAG
Trigger: GCCTGCTGCTTGCCTCCTCCAGCTGGCAGAAATACA...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCATAGCGTTCAACACTaGAAATGGCATCTCCACTGC +
Preference number: 4 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWHSVQH*KWHLHC
Trigger: GCAGTGGAGATGCCATTTCCAGTGTTGAACGCTATG...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGCATAGCGTTCAACACTaGAAATGGCATCTCCACTGC +
Preference number: 4 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSHSVQH*KWHLHC
Trigger: GCAGTGGAGATGCCATTTCCAGTGTTGAACGCTATG...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACTGGGGTCTCCAAGGGTaGAGCGGCTTGTTACATCCA +
Preference number: 4 (lower is better)
Translates to: KISPLVYIRVTSESPGQNWGLQG*SGLLHP
Trigger: TGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCA...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGATCACTACTTCTGTCTaGCGGCTTTCTGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKITTSV*RLSASS
Trigger: GGAGCTGGCAGAAAGCCGGCAGACAGAAGTAGTGAT...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CCACACTCGCCTTCACTTCATCACTGGCAATCTCTGCAGATGTATAGATATGTCCTTCTGGCAGCTTGTTaGGGTCTCCAAGGGTGCAGC +
Preference number: 4 (lower is better)
Translates to: PHSPSLHHWQSLQMYRYVLLAAC*GLQGCS
Trigger: GCTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAG...GACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGGCGAGTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTTCTTCCACAGTGATCTaGGAGGTATATGCAAAGTCA +
Preference number: 4 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRSSTVI*EVYAKS
Trigger: TGACTTTGCATATACCTCCCAGATCACTGTGGAAGA...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGTGGCCGGAAGTAACATaGATTCTTCACTCTCCATTA +
Preference number: 4 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWWPEVT*ILHSPL
Trigger: TAATGGAGAGTGAAGAATTCATGTTACTTCCGGCCA...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGGTCTCTCCCTCCCACTaGATAGATCATGTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKVSPSH*IDHVLV
Trigger: TACCAGGACATGATCTATGCAGTGGGAGGGAGAGAC...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGACCACGGGAGACCACTaGTTAGTTCTGGGGTTGTAT +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKTTGDH*LVLGLY
Trigger: ATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGT...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR CCA 90 bp CAGTGGCCTTCTGAGATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCCACGTATTGGCATCTaGGTCAAAAACTTCAATGGT +
Preference number: 4 (lower is better)
Translates to: QWPSEMKSDTQRKDPSSVPRIGI*VKNFNG
Trigger: ACCATTGAAGTTTTTGACCCAGATGCCAATACGTGG...GACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCATCTCAGAAGGCCACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR TCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGCCTGAATACTGTATTTaGCCCAGGCCATCACTGCAT +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKPEYCI*PRPSLH
Trigger: ATGCAGTGATGGCCTGGGTCAAATACAGTATTCAGG...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp AAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCAAAGGCCTTCTGGCAGCTTGTTaGGGTCTCCAAGGGTGCAGC +
Preference number: 4 (lower is better)
Translates to: KAKNKYSSAQSGKALCKGLLAAC*GLQGCS
Trigger: GCTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAG...GCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGGTTCAACACTGGAAATaGCATCTCCACTGCACCAAC +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKVQHWK*HLHCTN
Trigger: GTTGGTGCAGTGGAGATGCCATTTCCAGTGTTGAAC...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CCACACTCGCCTTCACTTCATCACTGGCAATCTCTGCAGATGTATAGATATGTCCCATTCGCCACTCATTaGTCTGGGGGTCATAGCGTT +
Preference number: 4 (lower is better)
Translates to: PHSPSLHHWQSLQMYRYVPFATH*SGGHSV
Trigger: AACGCTATGACCCCCAGACCAATGAGTGGCGAATGG...GACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGGCGAGTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
3UTR CAA 72 bp AAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATaGTGCAAAGGCGGCGTTTTGCAGGTGAGCTCCGTC +
Preference number: 4 (lower is better)
Translates to: KNKYSSAQSGKA*CKGGVLQVSSV
Trigger: GACGGAGCTCACCTGCAAAACGCCGCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR TCA 90 bp TCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCACCGAGGGTGCTTGTCTaGAATATAGGGCATGCGAGC +
Preference number: 4 (lower is better)
Translates to: SNMKISPLVYIRVTSESPPRVLV*NIGHAS
Trigger: GCTCGCATGCCCTATATTTCAGACAAGCACCCTCGG...TGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGACCTCTCAACTATATTaGGGCAAGAGACACCATCCT +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKTSQLY*GKRHHP
Trigger: AGGATGGTGTCTCTTGCCTCAATATAGTTGAGAGGT...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp AGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGTCTCATCTGAAATATAGGGCATaGGAGCAGGTTGGGGAACCC +
Preference number: 4 (lower is better)
Translates to: RGEGEGKGYSFWLWLKSHLKYRA*EQVGEP
Trigger: GGGTTCCCCAACCTGCTCGCATGCCCTATATTTCAG...ATGAGACTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp GTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGGTCAGAGCCTACGGTaGCCACCAGGAACTTGGGAC +
Preference number: 4 (lower is better)
Translates to: VLLNMYSNMKISPLVYIRGQSLR*PPGTWD
Trigger: GTCCCAAGTTCCTGGTGGGCACCGTAGGCTCTGACC...CCTTATATACACCAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACCATTCCAGTCTCTCCTaGTCGAATGTTGGTACACCT +
Preference number: 4 (lower is better)
Translates to: KISPLVYIRVTSESPGQNHSSLS*SNVGTP
Trigger: AGGTGTACCAACATTCGACCAGGAGAGACTGGAATG...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CCACACTCGCCTTCACTTCATCACTGGCAATCTCTGCAGATGTATAGATATGTCCAATCAGGAGCTCCATaGCCCTCTCATCTATGTCTC +
Preference number: 4 (lower is better)
Translates to: PHSPSLHHWQSLQMYRYVQSGAP*PSHLCL
Trigger: GAGACATAGATGAGAGGGCCATGGAGCTCCTGATTG...GACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGGCGAGTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GGTGCCAGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGCTCTCCATTACCTCTTaGAAGTTATGTTGGGTGAAC +
Preference number: 4 (lower is better)
Translates to: GARGEGEGKGYSFWLWLKLSITS*KLCWVN
Trigger: GTTCACCCAACATAACTTTCAAGAGGTAATGGAGAG...CTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCTGGCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp TTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGCCTGAATACTGTATTTaGCCCAGGCCATCACTGCAT +
Preference number: 4 (lower is better)
Translates to: FAGVVLLNMYSNMKISPLPEYCI*PRPSLH
Trigger: ATGCAGTGATGGCCTGGGTCAAATACAGTATTCAGG...CAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp AAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCAAAGGCCTGAAATATAGGGCATaGGAGCAGGTTGGGGAACCC +
Preference number: 4 (lower is better)
Translates to: KAKNKYSSAQSGKALCKGLKYRA*EQVGEP
Trigger: GGGTTCCCCAACCTGCTCGCATGCCCTATATTTCAG...GCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTATGAGGATCCATCATaGCCGCCTACTGCATATAAC +
Preference number: 4 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPYEDPS*PPTAYN
Trigger: GTTATATGCAGTAGGCGGCCATGATGGATCCTCATA...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp AGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGTCTCATACCACGGGAGACCACTaGTTAGTTCTGGGGTTGTAT +
Preference number: 4 (lower is better)
Translates to: RGEGEGKGYSFWLWLKSHTTGDH*LVLGLY
Trigger: ATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGT...ATGAGACTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR TCA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAGGCAAGAGAGTCTaGACATTGCCCTCTTCCACA +
Preference number: 4 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYAGKRV*TLPSST
Trigger: TGTGGAAGAGGGCAATGTTCAGACTCTCTTGCCTGC...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTCTCTCCATTACCTCTTaGAAGTTATGTTGGGTGAAC +
Preference number: 4 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPLSITS*KLCWVN
Trigger: GTTCACCCAACATAACTTTCAAGAGGTAATGGAGAG...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACTGGCCGGAAGTAACATaGATTCTTCACTCTCCATTA +
Preference number: 4 (lower is better)
Translates to: KISPLVYIRVTSESPGQNWPEVT*ILHSPL
Trigger: TAATGGAGAGTGAAGAATTCATGTTACTTCCGGCCA...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp TCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAAACACTATTGAGATATaGGGATCCATCATGGCCGCC +
Preference number: 4 (lower is better)
Translates to: SNMKISPLVYIRVTSESPNTIEI*GSIMAA
Trigger: GGCGGCCATGATGGATCCTCATATCTCAATAGTGTT...TGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATCTCCCCTGTAAACATTaGTCGGAAGTAGGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDLPCKH*SEVGAA
Trigger: TGCAGCCCCTACTTCCGAGCAATGTTTACAGGGGAG...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GTTCTATTGTTTTCTCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATGACAGGATGACGCGGTaGGCATATATCTTCTTAGCG +
Preference number: 4 (lower is better)
Translates to: VLLFSPAVQSFEVKALPNDRMTR*AYIFLA
Trigger: CGCTAAGAAGATATATGCCCACCGCGTCATCCTGTC...ATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGAGAAAACAATAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GTTCTATTGTTTTCTCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATCAATCAGGAGCTCCATaGCCCTCTCATCTATGTCTC +
Preference number: 4 (lower is better)
Translates to: VLLFSPAVQSFEVKALPNQSGAP*PSHLCL
Trigger: GAGACATAGATGAGAGGGCCATGGAGCTCCTGATTG...ATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGAGAAAACAATAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CCACACTCGCCTTCACTTCATCACTGGCAATCTCTGCAGATGTATAGATATGTCTCTTCCACAGTGATCTaGGAGGTATATGCAAAGTCA +
Preference number: 4 (lower is better)
Translates to: PHSPSLHHWQSLQMYRYVSSTVI*EVYAKS
Trigger: TGACTTTGCATATACCTCCCAGATCACTGTGGAAGA...GACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGGCGAGTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp ATCACTGGCAATCTCTGCAGATGTATAGATATGTCTAAAAGGAATAACATCAGGTGTATTTCTGCCAGCTaGAGGAGGCAAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: ITGNLCRCIDMSKRNNIRCISAS*RRQAAG
Trigger: GCCTGCTGCTTGCCTCCTCCAGCTGGCAGAAATACA...CCTGATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp TTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGGAAAGTTATGTTGGGTaGACTTGTCTGCAATCCTTA +
Preference number: 4 (lower is better)
Translates to: FAGVVLLNMYSNMKISPLESYVG*TCLQSL
Trigger: TAAGGATTGCAGACAAGTTCACCCAACATAACTTTC...CAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATTCACATAGCTCCCGGTaGTTTCTCAGAAGGTTGATC +
Preference number: 4 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYSHSSR*FLRRLI
Trigger: GATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGA...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGTTCAACACTGGAAATaGCATCTCCACTGCACCAAC +
Preference number: 4 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYVQHWK*HLHCTN
Trigger: GTTGGTGCAGTGGAGATGCCATTTCCAGTGTTGAAC...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTGGTCAAAAACTTCAATaGTCTTCAAGTATGTTGTGC +
Preference number: 4 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPGQKLQ*SSSMLC
Trigger: GCACAACATACTTGAAGACCATTGAAGTTTTTGACC...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR TCA 90 bp AGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGTCTCATGAAAGTTATGTTGGGTaGACTTGTCTGCAATCCTTA +
Preference number: 4 (lower is better)
Translates to: RGEGEGKGYSFWLWLKSHESYVG*TCLQSL
Trigger: TAAGGATTGCAGACAAGTTCACCCAACATAACTTTC...ATGAGACTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp AAATTAAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCATCGCCTTTTGCTCATTaGAGCTACCATTCGCCACTC +
Preference number: 4 (lower is better)
Translates to: KLKPKINTLLHRAERHCASPFAH*SYHSPL
Trigger: GAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGA...TGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTTAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATAACACTATTGAGATATaGGGATCCATCATGGCCGCC +
Preference number: 4 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDNTIEI*GSIMAA
Trigger: GGCGGCCATGATGGATCCTCATATCTCAATAGTGTT...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR TCA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATACCTCTCAACTATATTaGGGCAAGAGACACCATCCT +
Preference number: 4 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYTSQLY*GKRHHP
Trigger: AGGATGGTGTCTCTTGCCTCAATATAGTTGAGAGGT...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATGACCCAGGCCATCACTaGATTGAACACTTGTTCTTC +
Preference number: 4 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDDPGHH*IEHLFF
Trigger: GAAGAACAAGTGTTCAATGCAGTGATGGCCTGGGTC...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp GTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGCATTCCAGTCTCTCCTaGTCGAATGTTGGTACACCT +
Preference number: 4 (lower is better)
Translates to: VLLNMYSNMKISPLVYIRHSSLS*SNVGTP
Trigger: AGGTGTACCAACATTCGACCAGGAGAGACTGGAATG...CCTTATATACACCAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATTATGAGGATCCATCATaGCCGCCTACTGCATATAAC +
Preference number: 4 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYYEDPS*PPTAYN
Trigger: GTTATATGCAGTAGGCGGCCATGATGGATCCTCATA...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp TCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAACATCGCTGCTCCATTaGTTAGTTTTGGGGTCATAT +
Preference number: 4 (lower is better)
Translates to: SNMKISPLVYIRVTSESPTSLLH*LVLGSY
Trigger: ATATGACCCCAAAACTAACCAATGGAGCAGCGATGT...TGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp AAATTAAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCAACCACGGGAGACCACTaGTTAGTTCTGGGGTTGTAT +
Preference number: 4 (lower is better)
Translates to: KLKPKINTLLHRAERHCATTGDH*LVLGLY
Trigger: ATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGT...TGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTTAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR TCA 90 bp AAATTAAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCAGCTTTCTCAGAAGGTTaGTCACTTCCAAGGTTTGCC +
Preference number: 4 (lower is better)
Translates to: KLKPKINTLLHRAERHCAAFSEG*SLPRFA
Trigger: GGCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGC...TGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTTAATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR GCA 90 bp ATCACTGGCAATCTCTGCAGATGTATAGATATGTCTAAAAGGAATAACATCAGGTCACATAGCTCCCGGTaGTTTCTCAGAAGGTTGATC +
Preference number: 4 (lower is better)
Translates to: ITGNLCRCIDMSKRNNIRSHSSR*FLRRLI
Trigger: GATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGA...CCTGATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATACATCGCTGCTCCATTaGTTAGTTTTGGGGTCATAT +
Preference number: 4 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYTSLLH*LVLGSY
Trigger: ATATGACCCCAAAACTAACCAATGGAGCAGCGATGT...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CCA 90 bp TCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGTCAAAAACTTCAATaGTCTTCAAGTATGTTGTGC +
Preference number: 4 (lower is better)
Translates to: SNMKISPLVYIRVTSESPGQKLQ*SSSMLC
Trigger: GCACAACATACTTGAAGACCATTGAAGTTTTTGACC...TGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR CCA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATCCACGTATTGGCATCTaGGTCAAAAACTTCAATGGT +
Preference number: 4 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDPRIGI*VKNFNG
Trigger: ACCATTGAAGTTTTTGACCCAGATGCCAATACGTGG...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR CCA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATGGTCAAAAACTTCAATaGTCTTCAAGTATGTTGTGC +
Preference number: 4 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDGQKLQ*SSSMLC
Trigger: GCACAACATACTTGAAGACCATTGAAGTTTTTGACC...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS GCA 90 bp GACACCATCCTGTCCACCCACAGCATAGAGAAAACCTCCAAGGACTaGCACACCAACGCTTGTCCTGCAGGTGCTTGTAGGGGCCACATC +
Preference number: 5 (lower is better)
Translates to: DTILSTHSIEKTSKD*HTNACPAGACRGHI
Trigger: GATGTGGCCCCTACAAGCACCTGCAGGACAAGCGTTGGTGTGGCAGTCCTTGGAGGTTTTCTCTATGCTGTGGGTGGACAGGATGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 90 bp TATAGGGCATGCGAGCAGGTTGGGGAACCCCTTCTGGCAGCTTGTTaGGGTCTCCAAGGGTGCAGCGGCTTGTTACATCCATTCCAGTCT +
Preference number: 5 (lower is better)
Translates to: YRACEQVGEPLLAAC*GLQGCSGLLHPFQS
Trigger: AGACTGGAATGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAGGGGTTCCCCAACCTGCTCGCATGCCCTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 90 bp CCGACTCCACTCCTGCGGGATGTCATGGCCACCACGGGAGACCACTaGTTAGTTCTGGGGTTGTATCTCTCAGCACTGCTAAGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: PTPLLRDVMATTGDH*LVLGLYLSALLSSV
Trigger: TACAGAGCTTAGCAGTGCTGAGAGATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGTGGCCATGACATCCCGCAGGAGTGGAGTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR CAA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACGGGCATGCGAGCAGGTaGGGGAACCCCTTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: KISPLVYIRVTSESPGQNGHASR*GNPFWQ
Trigger: CTGCCAGAAGGGGTTCCCCAACCTGCTCGCATGCCC...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS TCA 90 bp TCTCAGAAGGTTGATCACTTCCAAGGTTTGCCGAGGGTGCTTGTCTaGAATATAGGGCATGCGAGCAGGTTGGGGAACCCCTTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: SQKVDHFQGLPRVLV*NIGHASRLGNPFWQ
Trigger: CTGCCAGAAGGGGTTCCCCAACCTGCTCGCATGCCCTATATTTCAGACAAGCACCCTCGGCAAACCTTGGAAGTGATCAACCTTCTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS TCA 90 bp GGCAAGCAGCAGGCAAGAGAGTCTGAACATTGCCCTCTTCCACAGTaGTCTGGGAGGTATATGCAAAGTCAATCAGGAGCTCCATGGCCC +
Preference number: 5 (lower is better)
Translates to: GKQQARESEHCPLPQ*SGRYMQSQSGAPWP
Trigger: GGGCCATGGAGCTCCTGATTGACTTTGCATATACCTCCCAGATCACTGTGGAAGAGGGCAATGTTCAGACTCTCTTGCCTGCTGCTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACACCCCTTCTGGCAGCTaGTTGGGGTCTCCAAGGGTG +
Preference number: 5 (lower is better)
Translates to: KISPLVYIRVTSESPGQNTPSGS*LGSPRV
Trigger: CACCCTTGGAGACCCCAACAAGCTGCCAGAAGGGGT...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTTGGTTAGTTCTGGGGTaGTATCTCTCAGCACTGCTA +
Preference number: 5 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRWLVLG*YLSALL
Trigger: TAGCAGTGCTGAGAGATACAACCCCAGAACTAACCA...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS GCA 90 bp ATCTTCTTAGCGCCCACAACTAGCACCACATCACATAGCTCCCGGTaGTTTCTCAGAAGGTTGATCACTTCCAAGGTTTGCCGAGGGTGC +
Preference number: 5 (lower is better)
Translates to: IFLAPTTSTTSHSSR*FLRRLITSKVCRGC
Trigger: GCACCCTCGGCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGATGTGGTGCTAGTTGTGGGCGCTAAGAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp TTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGCCTTCTGGCAGCTTGTaGGGGTCTCCAAGGGTGCAG +
Preference number: 5 (lower is better)
Translates to: FAGVVLLNMYSNMKISPLPSGSL*GSPRVQ
Trigger: CTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAGG...CAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GGAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCCAGGCCATCACTGCATaGAACACTTGTTCTTCACTC +
Preference number: 5 (lower is better)
Translates to: GKKAAGGDSRHNSSTATLQAITA*NTCSSL
Trigger: GAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTG...GAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGATCGCCTTTTGCTCATaGAAGCTACCATTCGCCACT +
Preference number: 5 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSIAFCS*KLPFAT
Trigger: AGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGAT...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 90 bp TTCGCCACTCATTGGTCTGGGGGTCATAGCGTTCAACACTGGAAATaGCATCTCCACTGCACCAACCACCAACTGCAAAGAGTACTTCTC +
Preference number: 5 (lower is better)
Translates to: FATHWSGGHSVQHWK*HLHCTNHQLQRVLL
Trigger: GAGAAGTACTCTTTGCAGTTGGTGGTTGGTGCAGTGGAGATGCCATTTCCAGTGTTGAACGCTATGACCCCCAGACCAATGAGTGGCGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 90 bp CTACCATTCGCCACTCATTGGTCTGGGGGTCATAGCGTTCAACACTaGAAATGGCATCTCCACTGCACCAACCACCAACTGCAAAGAGTA +
Preference number: 5 (lower is better)
Translates to: LPFATHWSGGHSVQH*KWHLHCTNHQLQRV
Trigger: TACTCTTTGCAGTTGGTGGTTGGTGCAGTGGAGATGCCATTTCCAGTGTTGAACGCTATGACCCCCAGACCAATGAGTGGCGAATGGTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 90 bp CTCCACATCGCCTTTTGCTCATTGAAGCTACCATTCGCCACTCATTaGTCTGGGGGTCATAGCGTTCAACACTGGAAATGGCATCTCCAC +
Preference number: 5 (lower is better)
Translates to: LHIAFCSLKLPFATH*SGGHSVQHWKWHLH
Trigger: GTGGAGATGCCATTTCCAGTGTTGAACGCTATGACCCCCAGACCAATGAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGATGTGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCGTATGTCAATGAGTTGGTaGGCCGGAAGTAACATGAAT +
Preference number: 5 (lower is better)
Translates to: KSDTQRKDPSSVHTLRWRMSMSW*AGSNMN
Trigger: ATTCATGTTACTTCCGGCCAACCAACTCATTGACAT...ACGCCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTCCGTGGTCTTGTCCTaGGCCCTTGCATTAGTGGTC +
Preference number: 5 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPSVVLS*ALALVV
Trigger: GACCACTAATGCAAGGGCCAAGGACAAGACCACGGA...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp CAGTGGCCTTCTGAGATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCACTCCACATCGCCTTTaGCTCATTGAAGCTACCATT +
Preference number: 5 (lower is better)
Translates to: QWPSEMKSDTQRKDPSSVTPHRL*LIEATI
Trigger: AATGGTAGCTTCAATGAGCAAAAGGCGATGTGGAGT...GACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCATCTCAGAAGGCCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 90 bp GAGAGTCTGAACATTGCCCTCTTCCACAGTGATCTGGGAGGTATATaGAAAGTCAATCAGGAGCTCCATGGCCCTCTCATCTATGTCTCG +
Preference number: 5 (lower is better)
Translates to: ESLNIALFHSDLGGI*KVNQELHGPLIYVS
Trigger: CGAGACATAGATGAGAGGGCCATGGAGCTCCTGATTGACTTTGCATATACCTCCCAGATCACTGTGGAAGAGGGCAATGTTCAGACTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp CACTTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTCAAGGGTGCAGCGGCTaGTTACATCCATTCCAGTCT +
Preference number: 5 (lower is better)
Translates to: HFAGVVLLNMYSNMKISPQGCSG*LHPFQS
Trigger: AGACTGGAATGGATGTAACAAGCCGCTGCACCCTTG...AGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCGCACTGCATTGAACACTaGTTCTTCACTCCGAACATT +
Preference number: 5 (lower is better)
Translates to: ERKLQVVTVGTTLPQPHSHCIEH*FFTPNI
Trigger: AATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTG...CGAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GGAAAGAAAGCTGCAGGTGGTGACAGTCGGCACAACTCTTCCACAGCCACACTCCACTGCATTGAACACTaGTTCTTCACTCCGAACATT +
Preference number: 5 (lower is better)
Translates to: GKKAAGGDSRHNSSTATLHCIEH*FFTPNI
Trigger: AATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTG...GAGTGTGGCTGTGGAAGAGTTGTGCCGACTGTCACCACCTGCAGCTTTCTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS TCA 90 bp CAACTAGCACCACATCACATAGCTCCCGGTGCTTTCTCAGAAGGTTaGTCACTTCCAAGGTTTGCCGAGGGTGCTTGTCTGAAATATAGG +
Preference number: 5 (lower is better)
Translates to: QLAPHHIAPGAFSEG*SLPRFAEGACLKYR
Trigger: CCTATATTTCAGACAAGCACCCTCGGCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGATGTGGTGCTAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS TCA 90 bp ATCCATCATGGCCGCCTACTGCATATAACAGGTCATCAAGAACACTaGCCCCGACTCCACATCGCCTTTTGCTCATTGAAGCTACCATTC +
Preference number: 5 (lower is better)
Translates to: IHHGRLLHITGHQEH*PRLHIAFCSLKLPF
Trigger: GAATGGTAGCTTCAATGAGCAAAAGGCGATGTGGAGTCGGGGTCAGTGTTCTTGATGACCTGTTATATGCAGTAGGCGGCCATGATGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GTTCTATTGTTTTCTCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATCCTTCTGGCAGCTTGTaGGGGTCTCCAAGGGTGCAG +
Preference number: 5 (lower is better)
Translates to: VLLFSPAVQSFEVKALPNPSGSL*GSPRVQ
Trigger: CTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAGG...ATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGAGAAAACAATAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAATTAAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCAGGGCATGCGAGCAGGTaGGGGAACCCCTTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: KLKPKINTLLHRAERHCAGHASR*GNPFWQ
Trigger: CTGCCAGAAGGGGTTCCCCAACCTGCTCGCATGCCC...TGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTTAATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp ATGAAGAGTGACACTCAGCGTAAGGACCCCAGCTCTGTCCACACACTTCGCTGGCTCTTGAAAGTTATGTaGGGTGAACTTGTCTGCAAT +
Preference number: 5 (lower is better)
Translates to: MKSDTQRKDPSSVHTLRWLLKVM*GELVCN
Trigger: ATTGCAGACAAGTTCACCCAACATAACTTTCAAGAG...CCAGCGAAGTGTGTGGACAGAGCTGGGGTCCTTACGCTGAGTGTCACTCTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACCAGGCCATCACTGCATaGAACACTTGTTCTTCACTC +
Preference number: 5 (lower is better)
Translates to: KISPLVYIRVTSESPGQNQAITA*NTCSSL
Trigger: GAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTG...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 90 bp CTGAGGCCGTCTTTCCTGAATACTGTATTTGACCCAGGCCATCACTaGATTGAACACTTGTTCTTCACTCCGAACATTGAGCTCATCACT +
Preference number: 5 (lower is better)
Translates to: LRPSFLNTVFDPGHH*IEHLFFTPNIELIT
Trigger: AGTGATGAGCTCAATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTGGGTCAAATACAGTATTCAGGAAAGACGGCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACTGCTTTCTCAGAAGGTaGATCACTTCCAAGGTTTGC +
Preference number: 5 (lower is better)
Translates to: KISPLVYIRVTSESPGQNCFLRR*ITSKVC
Trigger: GCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCA...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp TTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGTGGTTAGTTCTGGGGTaGTATCTCTCAGCACTGCTA +
Preference number: 5 (lower is better)
Translates to: FAGVVLLNMYSNMKISPLWLVLG*YLSALL
Trigger: TAGCAGTGCTGAGAGATACAACCCCAGAACTAACCA...CAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR CAA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATTCCGTGGTCTTGTCCTaGGCCCTTGCATTAGTGGTC +
Preference number: 5 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDSVVLS*ALALVV
Trigger: GACCACTAATGCAAGGGCCAAGGACAAGACCACGGA...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AGGGGAGAGGGAGAAGGTAAAGGTTATTCCTTTTGGTTGTGGCTAAAGTCTCATATCGCCTTTTGCTCATaGAAGCTACCATTCGCCACT +
Preference number: 5 (lower is better)
Translates to: RGEGEGKGYSFWLWLKSHIAFCS*KLPFAT
Trigger: AGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGAT...ATGAGACTTTAGCCACAACCAAAAGGAATAACCTTTACCTTCTCCCTCTCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGCAAGGGTGCAGCGGCTaGTTACATCCATTCCAGTCT +
Preference number: 5 (lower is better)
Translates to: VLLNMYSNMKISPLVYIRQGCSG*LHPFQS
Trigger: AGACTGGAATGGATGTAACAAGCCGCTGCACCCTTG...CCTTATATACACCAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp CCACACTCGCCTTCACTTCATCACTGGCAATCTCTGCAGATGTATAGATATGTCTTATGTTGGGTGAACTaGTCTGCAATCCTTAGCAAC +
Preference number: 5 (lower is better)
Translates to: PHSPSLHHWQSLQMYRYVLCWVN*SAILSN
Trigger: GTTGCTAAGGATTGCAGACAAGTTCACCCAACATAA...GACATATCTATACATCTGCAGAGATTGCCAGTGATGAAGTGAAGGCGAGTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp AAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCAGGCCAGAACCTCTTGAAAGTTATGTaGGGTGAACTTGTCTGCAAT +
Preference number: 5 (lower is better)
Translates to: KISPLVYIRVTSESPGQNLLKVM*GELVCN
Trigger: ATTGCAGACAAGTTCACCCAACATAACTTTCAAGAG...GTTCTGGCCTGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp TTCGCTGGCGTGGTGCTCCTAAACATGTACTCTAACATGAAGATCAGTCCTTTGATGTCAATGAGTTGGTaGGCCGGAAGTAACATGAAT +
Preference number: 5 (lower is better)
Translates to: FAGVVLLNMYSNMKISPLMSMSW*AGSNMN
Trigger: ATTCATGTTACTTCCGGCCAACCAACTCATTGACAT...CAAAGGACTGATCTTCATGTTAGAGTACATGTTTAGGAGCACCACGCCAGCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp TCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATCACATCGCTGCTCCATaGGTTAGTTTTGGGGTCATA +
Preference number: 5 (lower is better)
Translates to: SSCTKLRSQGSSKYKGAYHIAAP*VSFGVI
Trigger: TATGACCCCAAAACTAACCAATGGAGCAGCGATGTG...ATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp TCTAACATGAAGATCAGTCCTTTGGTGTATATAAGGGTCACCTCAGAGTCACCATTATGTTGGGTGAACTaGTCTGCAATCCTTAGCAAC +
Preference number: 5 (lower is better)
Translates to: SNMKISPLVYIRVTSESPLCWVN*SAILSN
Trigger: GTTGCTAAGGATTGCAGACAAGTTCACCCAACATAA...TGGTGACTCTGAGGTGACCCTTATATACACCAAAGGACTGATCTTCATGTTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GTTCTATTGTTTTCTCCAGCTGTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATACTCCACATCGCCTTTaGCTCATTGAAGCTACCATT +
Preference number: 5 (lower is better)
Translates to: VLLFSPAVQSFEVKALPNTPHRL*LIEATI
Trigger: AATGGTAGCTTCAATGAGCAAAAGGCGATGTGGAGT...ATTTGGAAGAGCCTTGACTTCGAAGCTTTGTACAGCTGGAGAAAACAATAGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATCACATCGCTGCTCCATaGGTTAGTTTTGGGGTCATA +
Preference number: 5 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDHIAAP*VSFGVI
Trigger: TATGACCCCAAAACTAACCAATGGAGCAGCGATGTG...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp GTACAAAGCTTCGAAGTCAAGGCTCTTCCAAATATAAAGGAGCATATGCAAGATTGGTTAGTTCTGGGGTaGTATCTCTCAGCACTGCTA +
Preference number: 5 (lower is better)
Translates to: VQSFEVKALPNIKEHMQDWLVLG*YLSALL
Trigger: TAGCAGTGCTGAGAGATACAACCCCAGAACTAACCA...ATCTTGCATATGCTCCTTTATATTTGGAAGAGCCTTGACTTCGAAGCTTTGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS-3UTR CAA 90 bp AAAGCCAAAAATAAATACTCTTCTGCACAGAGCGGAAAGGCATTGTGCAAAGGCTCTTCACTCCGAACATaGAGCTCATCACTAGATATT +
Preference number: 5 (lower is better)
Translates to: KAKNKYSSAQSGKALCKGSSLRT*SSSLDI
Trigger: AATATCTAGTGATGAGCTCAATGTTCGGAGTGAAGA...GCCTTTGCACAATGCCTTTCCGCTCTGTGCAGAAGAGTATTTATTTTTGGCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp ATCACTGGCAATCTCTGCAGATGTATAGATATGTCTAAAAGGAATAACATCAGGTGCTTTCTCAGAAGGTaGATCACTTCCAAGGTTTGC +
Preference number: 5 (lower is better)
Translates to: ITGNLCRCIDMSKRNNIRCFLRR*ITSKVC
Trigger: GCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCA...CCTGATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS-3UTR CAA 90 bp ATCACTGGCAATCTCTGCAGATGTATAGATATGTCTAAAAGGAATAACATCAGGTCTTCACTCCGAACATaGAGCTCATCACTAGATATT +
Preference number: 5 (lower is better)
Translates to: ITGNLCRCIDMSKRNNIRSSLRT*SSSLDI
Trigger: AATATCTAGTGATGAGCTCAATGTTCGGAGTGAAGA...CCTGATGTTATTCCTTTTAGACATATCTATACATCTGCAGAGATTGCCAGTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 72 bp TGCGAGCAGGTTGGGGAACCCCTTCTGGCAGCTTGTTaGGGTCTCCAAGGGTGCAGCGGCTTGTTACATCCA +
Preference number: 6 (lower is better)
Translates to: CEQVGEPLLAAC*GLQGCSGLLHP
Trigger: TGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAGGGGTTCCCCAACCTGCTCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp ATGAGGGGGTCAGAGCCTACGGTGCCCACCAGGAACTaGGGACTAAGCAAAGGCAGGCGAACATGTTGCAGC +
Preference number: 6 (lower is better)
Translates to: MRGSEPTVPTRN*GLSKGRRTCCS
Trigger: GCTGCAACATGTTCGCCTGCCTTTGCTTAGTCCCAAGTTCCTGGTGGGCACCGTAGGCTCTGACCCCCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 72 bp GAACCCCTTCTGGCAGCTTGTTGGGGTCTCCAAGGGTaGAGCGGCTTGTTACATCCATTCCAGTCTCTCCTG +
Preference number: 6 (lower is better)
Translates to: EPLLAACWGLQG*SGLLHPFQSLL
Trigger: CAGGAGAGACTGGAATGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAGGGGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 72 bp CTCCTGCGGGATGTCATGGCCACCACGGGAGACCACTaGTTAGTTCTGGGGTTGTATCTCTCAGCACTGCTA +
Preference number: 6 (lower is better)
Translates to: LLRDVMATTGDH*LVLGLYLSALL
Trigger: TAGCAGTGCTGAGAGATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGTGGCCATGACATCCCGCAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS CAA 90 bp GAACCCCTTCTGGCAGCTTGTTGGGGTCTCCAAGGGTGCAGCGGCTaGTTACATCCATTCCAGTCTCTCCTGGTCGAATGTTGGTACACC +
Preference number: 6 (lower is better)
Translates to: EPLLAACWGLQGCSG*LHPFQSLLVECWYT
Trigger: GGTGTACCAACATTCGACCAGGAGAGACTGGAATGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCAACAAGCTGCCAGAAGGGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 90 bp CGGGATGTCATGGCCACCACGGGAGACCACTGGTTAGTTCTGGGGTaGTATCTCTCAGCACTGCTAAGCTCTGTAGTGTCGTCTCTCCCT +
Preference number: 6 (lower is better)
Translates to: RDVMATTGDHWLVLG*YLSALLSSVVSSLP
Trigger: AGGGAGAGACGACACTACAGAGCTTAGCAGTGCTGAGAGATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGTGGCCATGACATCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 72 bp CTGTCCACCCACAGCATAGAGAAAACCTCCAAGGACTaGCACACCAACGCTTGTCCTGCAGGTGCTTGTAGG +
Preference number: 6 (lower is better)
Translates to: LSTHSIEKTSKD*HTNACPAGACR
Trigger: CCTACAAGCACCTGCAGGACAAGCGTTGGTGTGGCAGTCCTTGGAGGTTTTCTCTATGCTGTGGGTGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp CTGGCAGCTTGTTGGGGTCTCCAAGGGTGCAGCGGCTaGTTACATCCATTCCAGTCTCTCCTGGTCGAATGT +
Preference number: 6 (lower is better)
Translates to: LAACWGLQGCSG*LHPFQSLLVEC
Trigger: ACATTCGACCAGGAGAGACTGGAATGGATGTAACAAGCCGCTGCACCCTTGGAGACCCCAACAAGCTGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS TCA 72 bp GTTGATCACTTCCAAGGTTTGCCGAGGGTGCTTGTCTaGAATATAGGGCATGCGAGCAGGTTGGGGAACCCC +
Preference number: 6 (lower is better)
Translates to: VDHFQGLPRVLV*NIGHASRLGNP
Trigger: GGGGTTCCCCAACCTGCTCGCATGCCCTATATTTCAGACAAGCACCCTCGGCAAACCTTGGAAGTGATCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 72 bp GCCACTCATTGGTCTGGGGGTCATAGCGTTCAACACTaGAAATGGCATCTCCACTGCACCAACCACCAACTG +
Preference number: 6 (lower is better)
Translates to: ATHWSGGHSVQH*KWHLHCTNHQL
Trigger: CAGTTGGTGGTTGGTGCAGTGGAGATGCCATTTCCAGTGTTGAACGCTATGACCCCCAGACCAATGAGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp ATGGCCACCACGGGAGACCACTGGTTAGTTCTGGGGTaGTATCTCTCAGCACTGCTAAGCTCTGTAGTGTCG +
Preference number: 6 (lower is better)
Translates to: MATTGDHWLVLG*YLSALLSSVVS
Trigger: CGACACTACAGAGCTTAGCAGTGCTGAGAGATACAACCCCAGAACTAACCAGTGGTCTCCCGTGGTGGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
ENSMUST00000195584.2
CDS TCA 72 bp CCACATCACATAGCTCCCGGTGCTTTCTCAGAAGGTTaGTCACTTCCAAGGTTTGCCGAGGGTGCTTGTCTG +
Preference number: 6 (lower is better)
Translates to: PHHIAPGAFSEG*SLPRFAEGACL
Trigger: CAGACAAGCACCCTCGGCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGATGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 72 bp GCGCCCACAACTAGCACCACATCACATAGCTCCCGGTaGTTTCTCAGAAGGTTGATCACTTCCAAGGTTTGC +
Preference number: 6 (lower is better)
Translates to: APTTSTTSHSSR*FLRRLITSKVC
Trigger: GCAAACCTTGGAAGTGATCAACCTTCTGAGAAAGCACCGGGAGCTATGTGATGTGGTGCTAGTTGTGGGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 72 bp GCCCTCTCATCTATGTCTCGGATCACTACTTCTGTCTaGCGGCTTTCTGCCAGCTCCCCTGTAAACATTGCT +
Preference number: 6 (lower is better)
Translates to: ALSSMSRITTSV*RLSASSPVNIA
Trigger: AGCAATGTTTACAGGGGAGCTGGCAGAAAGCCGGCAGACAGAAGTAGTGATCCGAGACATAGATGAGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS TCA 72 bp GGCCGCCTACTGCATATAACAGGTCATCAAGAACACTaGCCCCGACTCCACATCGCCTTTTGCTCATTGAAG +
Preference number: 6 (lower is better)
Translates to: GRLLHITGHQEH*PRLHIAFCSLK
Trigger: CTTCAATGAGCAAAAGGCGATGTGGAGTCGGGGTCAGTGTTCTTGATGACCTGTTATATGCAGTAGGCGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 90 bp TATAACAGGTCATCAAGAACACTGACCCCGACTCCACATCGCCTTTaGCTCATTGAAGCTACCATTCGCCACTCATTGGTCTGGGGGTCA +
Preference number: 6 (lower is better)
Translates to: YNRSSRTLTPTPHRL*LIEATIRHSLVWGS
Trigger: TGACCCCCAGACCAATGAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGATGTGGAGTCGGGGTCAGTGTTCTTGATGACCTGTTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 72 bp GCCTTTTGCTCATTGAAGCTACCATTCGCCACTCATTaGTCTGGGGGTCATAGCGTTCAACACTGGAAATGG +
Preference number: 6 (lower is better)
Translates to: AFCSLKLPFATH*SGGHSVQHWKW
Trigger: CCATTTCCAGTGTTGAACGCTATGACCCCCAGACCAATGAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp TCATCAAGAACACTGACCCCGACTCCACATCGCCTTTaGCTCATTGAAGCTACCATTCGCCACTCATTGGTC +
Preference number: 6 (lower is better)
Translates to: SSRTLTPTPHRL*LIEATIRHSLV
Trigger: GACCAATGAGTGGCGAATGGTAGCTTCAATGAGCAAAAGGCGATGTGGAGTCGGGGTCAGTGTTCTTGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 72 bp TCTGGGAGGTATATGCAAAGTCAATCAGGAGCTCCATaGCCCTCTCATCTATGTCTCGGATCACTACTTCTG +
Preference number: 6 (lower is better)
Translates to: SGRYMQSQSGAP*PSHLCLGSLLL
Trigger: CAGAAGTAGTGATCCGAGACATAGATGAGAGGGCCATGGAGCTCCTGATTGACTTTGCATATACCTCCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp ACTGTATTTGACCCAGGCCATCACTGCATTGAACACTaGTTCTTCACTCCGAACATTGAGCTCATCACTAGA +
Preference number: 6 (lower is better)
Translates to: TVFDPGHHCIEH*FFTPNIELITR
Trigger: TCTAGTGATGAGCTCAATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTGGGTCAAATACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp CTTGTAGGGGCCACATCGCTGCTCCATTGGTTAGTTTaGGGGTCATATCTTTCAACACTATTGAGATATGAG +
Preference number: 6 (lower is better)
Translates to: LVGATSLLHWLV*GSYLSTLLRYE
Trigger: CTCATATCTCAATAGTGTTGAAAGATATGACCCCAAAACTAACCAATGGAGCAGCGATGTGGCCCCTACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS GCA 72 bp TCTTTCCTGAATACTGTATTTGACCCAGGCCATCACTaGATTGAACACTTGTTCTTCACTCCGAACATTGAG +
Preference number: 6 (lower is better)
Translates to: SFLNTVFDPGHH*IEHLFFTPNIE
Trigger: CTCAATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTGGGTCAAATACAGTATTCAGGAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 90 bp TTCCTGAATACTGTATTTGACCCAGGCCATCACTGCATTGAACACTaGTTCTTCACTCCGAACATTGAGCTCATCACTAGATATTATGTC +
Preference number: 6 (lower is better)
Translates to: FLNTVFDPGHHCIEH*FFTPNIELITRYYV
Trigger: GACATAATATCTAGTGATGAGCTCAATGTTCGGAGTGAAGAACAAGTGTTCAATGCAGTGATGGCCTGGGTCAAATACAGTATTCAGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CCA 72 bp ACATTGAGCTCATCACTAGATATTATGTCAATGAGTTaGTTGGCCGGAAGTAACATGAATTCTTCACTCTCC +
Preference number: 6 (lower is better)
Translates to: TLSSSLDIMSMS*LAGSNMNSSLS
Trigger: GGAGAGTGAAGAATTCATGTTACTTCCGGCCAACCAACTCATTGACATAATATCTAGTGATGAGCTCAATGT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7
CDS CAA 72 bp TTGAGCTCATCACTAGATATTATGTCAATGAGTTGGTaGGCCGGAAGTAACATGAATTCTTCACTCTCCATT +
Preference number: 6 (lower is better)
Translates to: LSSSLDIMSMSW*AGSNMNSSLSI
Trigger: AATGGAGAGTGAAGAATTCATGTTACTTCCGGCCAACCAACTCATTGACATAATATCTAGTGATGAGCTCAA
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111611.8
ENSMUST00000117467.7