RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLHL18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054792

Ensembl transcript IDs: ENSMUST00000068025.13, ENSMUST00000197336.5, ENSMUST00000198164.5, ENSMUST00000198400.5, ENSMUST00000200256.2

Found 507 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTaGCAAGGGGGAGCTGGGCCAGTGCTGCAGCAGGTGTTCGCTGGG +
Preference number: 1 (lower is better)
Translates to: REGSAGRPPAHECSL*QGGAGPVLQQVFAG
Trigger: CCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR TCA 90 bp ACATCTTGCTTCCCAGGGAGGCGGCTCCGTGTCGGCAGCGCTTGTTaGGCATGCTGGCTGCCGGGTGCCAGGTGGCCGTGTGGTGGTTGT +
Preference number: 1 (lower is better)
Translates to: TSCFPGRRLRVGSAC*ACWLPGARWPCGGC
Trigger: ACAACCACCACACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAAGCAAGATGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 90 bp CTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGCCAGTGCTaGAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGA +
Preference number: 1 (lower is better)
Translates to: LPMSAPCGKGELGQC*SRCSLGLDGACVPG
Trigger: TCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp CTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGCCAGTaGTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCT +
Preference number: 1 (lower is better)
Translates to: LLPMSAPCGKGELGQ*CSRCSLGLDGACVP
Trigger: AGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp TGCAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTaGTCCCTGTGGCAAGGGGGAGCTGGGCCAGTGCTGCAGCAGGTG +
Preference number: 1 (lower is better)
Translates to: CRRREGSAGRPPAHE*SLWQGGAGPVLQQV
Trigger: CACCTGCTGCAGCACTGGCCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp CAGGGAGGCGGCTCCGTGTCGGCAGCGCTTGTTGAGCATGCTGGCTaGCGGGTGCCAGGTGGCCGTGTGGTGGTTGTAGTGTTCCACACT +
Preference number: 1 (lower is better)
Translates to: QGGGSVSAALVEHAG*RVPGGRVVVVVFHT
Trigger: AGTGTGGAACACTACAACCACCACACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 90 bp AGGCGCCCACAGCTGGCCACGAGGGAGACCCGGCTCCGGCGTGTGTaGATGGGTACTATGAGACACCACTGGTCTGCCACAGAGCTGTAC +
Preference number: 1 (lower is better)
Translates to: RRPQLATRETRLRRV*MGTMRHHWSATELY
Trigger: GTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGTACCCATGCACACACGCCGGAGCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 90 bp GTGCCCCTGTCGAAGGGAGAGCCCGTGCACTCGCAGCATGCTAGCTaGTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCC +
Preference number: 1 (lower is better)
Translates to: VPLSKGEPVHSQHAS*CSCTTTGSDNTRVS
Trigger: GGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGAGTGCACGGGCTCTCCCTTCGACAGGGGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp AGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTaGACTCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCA +
Preference number: 1 (lower is better)
Translates to: RQGPSPLCPCRRESP*TRSMLAAVAAPPQA
Trigger: TGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGAGTGCACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp GCCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTaGCTGGACCAGCAAAGCACTTCCGTGTTACTGGCTGTGGGACCC +
Preference number: 1 (lower is better)
Translates to: ASAAAGVRWAWMEPV*LDQQSTSVLLAVGP
Trigger: GGGTCCCACAGCCAGTAACACGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp TTGACTGTCCATCGTAACCTCCCACTGCATAGAGGCGCCCACAGCTaGCCACGAGGGAGACCCGGCTCCGGCGTGTGTGCATGGGTACTA +
Preference number: 1 (lower is better)
Translates to: LTVHRNLPLHRGAHS*PRGRPGSGVCAWVL
Trigger: TAGTACCCATGCACACACGCCGGAGCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCTATGCAGTGGGAGGTTACGATGGACAGTCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 90 bp TCGAAGGGAGAGCCCGTGCACTCGCAGCATGCTAGCTGCTGTAGCTaGACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCC +
Preference number: 1 (lower is better)
Translates to: SKGEPVHSQHASCCS*TTTGSDNTRVSLLS
Trigger: GGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGAGTGCACGGGCTCTCCCTTCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp ACTTCTGTTCTCCCTGCTTGCTGGAGACAGGGGCCAAGTCCTCTGTaGCCCTGTCGAAGGGAGAGCCCGTGCACTCGCAGCATGCTAGCT +
Preference number: 1 (lower is better)
Translates to: TSVLPACWRQGPSPL*PCRRESPCTRSMLA
Trigger: AGCTAGCATGCTGCGAGTGCACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp GTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTaGACCAGCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGA +
Preference number: 1 (lower is better)
Translates to: VLQQVFAGLGWSLCA*TSKALPCYWLWDPR
Trigger: TCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp AGCCCAGAGAGAGAGGAGAAGAGGAAGTGCAGTGGCCAGACCCCATaGCCCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCC +
Preference number: 1 (lower is better)
Translates to: SPEREEKRKCSGQTP*PTRRVGPTSCYILS
Trigger: GGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGGGCCATGGGGTCTGGCCACTGCACTTCCTCTTCTCCTCTCTCTCTGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp CCGGCTCCGGCGTGTGTGCATGGGTACTATGAGACACCACTGGTCTaGCACAGAGCTGTACATCTCAGCAATACTGAGGAAGCCAGAGCC +
Preference number: 1 (lower is better)
Translates to: PAPACVHGYYETPLV*HRAVHLSNTEEARA
Trigger: GGCTCTGGCTTCCTCAGTATTGCTGAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGTACCCATGCACACACGCCGGAGCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 90 bp CCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCCTATaGTTGTACCAGATCCCTAGCCCACCACGTCCCATCCTCTCCTTA +
Preference number: 1 (lower is better)
Translates to: PLPLLRGLSPGRKRL*LYQIPSPPRPILSL
Trigger: TAAGGAGAGGATGGGACGTGGTGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CCA 90 bp TTCACCACAGCCACACCCACACGGCTTCGGGCTGTTGTCATGGGATaGCACTTTTCCCAGCGATTGGCGATAGGGTCGAACACTTCCACC +
Preference number: 1 (lower is better)
Translates to: FTTATPTRLRAVVMG*HFSQRLAIGSNTST
Trigger: GGTGGAAGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAAGCCGTGTGGGTGTGGCTGTGGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR TCA 90 bp CCACTGTCCACTTGTCCGTCTCAGGTGAGTAGGTCTCCACAGAGTTaGGGGAGGAGTTGCCGTCATAGCCTCCACACACGTAGATCTGTC +
Preference number: 1 (lower is better)
Translates to: PLSTCPSQVSRSPQS*GRSCRHSLHTRRSV
Trigger: GACAGATCTACGTGTGTGGAGGCTATGACGGCAACTCCTCCCTCAACTCTGTGGAGACCTACTCACCTGAGACGGACAAGTGGACAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CCA 90 bp GAGTCACCTGACCAAGCTGGTCCATGGCTGGTAGGAGCAAGCCCCTaGTTAGGTCCTAGAGGTACAAATGGTCAATGTGCTCTGGAAGCG +
Preference number: 1 (lower is better)
Translates to: ESPDQAGPWLVGASP*LGPRGTNGQCALEA
Trigger: CGCTTCCAGAGCACATTGACCATTTGTACCTCTAGGACCTAACCAGGGGCTTGCTCCTACCAGCCATGGACCAGCTTGGTCAGGTGACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp CCATCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATaGATGGAAAATAGCGGAATGGCAGGGAAGACGAGTCACCTGACC +
Preference number: 1 (lower is better)
Translates to: PSCWREGGRTPRVGK*MENSGMAGKTSHLT
Trigger: GGTCAGGTGACTCGTCTTCCCTGCCATTCCGCTATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp GATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGTGGACAGTaGAACAGACCGGACCCTAAGACCCAGTTTGGGGCTAGAAACAAT +
Preference number: 1 (lower is better)
Translates to: DPGRQQRARNQSGGQ*NRPDPKTQFGARNN
Trigger: ATTGTTTCTAGCCCCAAACTGGGTCTTAGGGTCCGGTCTGTTCCACTGTCCACCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR TCA 90 bp GTAGTGTTCCACACTGCTGAAGATCTGCAAGCCATCGTGGCCTCCTaGCACATATATCCTGCCCTCAAAGACTGTCACCCCAGCAGCACT +
Preference number: 1 (lower is better)
Translates to: VVFHTAEDLQAIVAS*HIYPALKDCHPSST
Trigger: AGTGCTGCTGGGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAGGAGGCCACGATGGCTTGCAGATCTTCAGCAGTGTGGAACACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 90 bp CCCCTAGAGTCTACCTCAGCAGGCAAACTGAGGGGCAGGAAGAAATaGTGGCGCTCCACTGGGAGCCTAGTTAAGATGTATCAGTTACCA +
Preference number: 1 (lower is better)
Translates to: PLESTSAGKLRGRKK*WRSTGSLVKMYQLP
Trigger: TGGTAACTGATACATCTTAACTAGGCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCCCCTCAGTTTGCCTGCTGAGGTAGACTCTAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp GATGGTGGATGGGTGAGTGCGAATCTGGGCAGACATGTTGTTTCTTaGTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGT +
Preference number: 1 (lower is better)
Translates to: DGGWVSANLGRHVVS*WPKRERMYVGVGIC
Trigger: ACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCTGCCCAGATTCGCACTCACCCATCCACCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp CTAGAGTCTACCTCAGCAGGCAAACTGAGGGGCAGGAAGAAATGCTaGCGCTCCACTGGGAGCCTAGTTAAGATGTATCAGTTACCAGAT +
Preference number: 1 (lower is better)
Translates to: LESTSAGKLRGRKKC*RSTGSLVKMYQLPD
Trigger: ATCTGGTAACTGATACATCTTAACTAGGCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCCCCTCAGTTTGCCTGCTGAGGTAGACTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 90 bp GGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATaGCAATTGCACACACTGGGAAACCTGATGGTCTGGGGAAAGGGA +
Preference number: 1 (lower is better)
Translates to: GSLHCREQESFLLNL*QLHTLGNLMVWGKG
Trigger: TCCCTTTCCCCAGACCATCAGGTTTCCCAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 90 bp AACATTATTTTCAAGTGCTTAGAGCAGAGGCCCGGCTCTTTACATTaGAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCAC +
Preference number: 1 (lower is better)
Translates to: NIIFKCLEQRPGSLH*REQESFLLNLWQLH
Trigger: GTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGCCTCTGCTCTAAGCACTTGAAAATAATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGATCGGGGCCGAGTCCTaGAAGCTGGCAGGTGGGGCC +
Preference number: 2 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGIGAES*KLAGGA
Trigger: GGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGAT...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CAA 90 bp AACATCTTGCTTCCCAGGGAGGCGGCTCCGTGTCGGCAGCGCTTGTaGAGCATGCTGGCTGCCGGGTGCCAGGTGGCCGTGTGGTGGTTG +
Preference number: 2 (lower is better)
Translates to: NILLPREAAPCRQRL*SMLAAGCQVAVWWL
Trigger: CAACCACCACACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAAGCAAGATGTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CAA 90 bp ACAAACATCTTGCTTCCCAGGGAGGCGGCTCCGTGTCGGCAGCGCTaGTTGAGCATGCTGGCTGCCGGGTGCCAGGTGGCCGTGTGGTGG +
Preference number: 2 (lower is better)
Translates to: TNILLPREAAPCRQR*LSMLAAGCQVAVWW
Trigger: CCACCACACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAAGCAAGATGTTTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp GGCTGCAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCGGGGAGCTGGGCCAGTaGTGCAGCAGGTGTTCGCTG +
Preference number: 2 (lower is better)
Translates to: GCRRREGSAGRPPAHECSGELGQ*CSRCSL
Trigger: CAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCC...GGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTCGGCCACAGCAGGGCTaGAGGAGAAGGGAAGGCTCG +
Preference number: 2 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARRPQQG*RRREGS
Trigger: CGAGCCTTCCCTTCTCCTGCAGCCCTGCTGTGGCCG...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CCGTGTCGGCAGCGCTTGTTGAGCATGCTGGCTGCCGGGTGCCAGGTGGCCGTGGTGCTCAGCCGCAACTaGCCATCATATCCCCCGATA +
Preference number: 2 (lower is better)
Translates to: PCRQRLLSMLAAGCQVAVVLSRN*PSYPPI
Trigger: TATCGGGGGATATGATGGTCAGTTGCGGCTGAGCAC...CACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGTTCGCTGGGCTTGGATaGAGCCTGTGTGCCTGGACC +
Preference number: 2 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGFAGLG*SLCAWT
Trigger: GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAA...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCCCGAGTCCTGAAAGCTaGCAGGTGGGGCCGGCGCTC +
Preference number: 2 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPPSPES*QVGPAL
Trigger: GAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGG...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGGCTAGCTGCTGTAGCTaGACCACCACAGGCAGTGAC +
Preference number: 2 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGASCCS*TTTGSD
Trigger: GTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGC...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTGCACTTCCGTGTTACTaGCTGTGGGACCCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARALPCY*LWDPRG
Trigger: CCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGC...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCGGATGTACGTGGGAGTaGGGATCTGTGGGAGCGCTG +
Preference number: 2 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTGCTWE*GSVGAL
Trigger: CAGCGCTCCCACAGATCCCCACTCCCACGTACATCC...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp GGCTGCAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCACCACTGCCTCTTCTaGGAGGACTCTCCCCTGGAA +
Preference number: 2 (lower is better)
Translates to: GCRRREGSAGRPPAHECSHHCLF*EDSPLE
Trigger: TTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTG...GGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGGAGCTGGGCCAGTGCTaGAGCAGGTGTTCGCTGGGC +
Preference number: 2 (lower is better)
Translates to: VFWSTTASSERTLPWKEAELGQC*SRCSLG
Trigger: GCCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTC...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTTGGAGCCTGTGTGCCTaGACCAGCAAAGCACTTCCG +
Preference number: 2 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARWSLCA*TSKALP
Trigger: CGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCA...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCATGGAGCCTGTGTGCCTaGACCAGCAAAGCACTTCCG +
Preference number: 2 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPWSLCA*TSKALP
Trigger: CGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCA...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCGTTCTCCCTGCTTGCTaGAGACAGGGGCCAAGTCCT +
Preference number: 2 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTVLPAC*RQGPSP
Trigger: AGGACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAAC...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAGGCAGGAAGAAATGCTaGCGCTCCACTGGGAGCCTA +
Preference number: 2 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPGRKKC*RSTGSL
Trigger: TAGGCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCC...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTAGTCTGCTTGCATCGTaGGGACCCAGGAGGCCCACC +
Preference number: 2 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGSLLAS*GPRRPT
Trigger: GGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACT...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGAGCTGGGCCAGTGCTaGAGCAGGTGTTCGCTGGGC +
Preference number: 2 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQELGQC*SRCSLG
Trigger: GCCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTC...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCGGGGAGCTGGGCCAGTaGTGCAGCAGGTGTTCGCTG +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERGELGQ*CSRCSL
Trigger: CAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCC...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGCGGCCACAGCAGGGCTaGAGGAGAAGGGAAGGCTCG +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWRPQQG*RRREGS
Trigger: CGAGCCTTCCCTTCTCCTGCAGCCCTGCTGTGGCCG...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGTGGTGGATGGGTGAGTaGGAATCTGGGCAGACATGT +
Preference number: 2 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGWWMGE*ESGQTC
Trigger: ACATGTCTGCCCAGATTCGCACTCACCCATCCACCA...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTGGAAGGAAGCGCCTATaGTTGTACCAGATCCCTAGC +
Preference number: 2 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARGRKRL*LYQIPS
Trigger: GCTAGGGATCTGGTACAAGCATAGGCGCTTCCTTCC...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGGAGGACTTAAGCACCTaGAAAAACTGTCCCTCTGGC +
Preference number: 2 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGEDLST*KNCPSG
Trigger: GCCAGAGGGACAGTTTTTCCAGGTGCTTAAGTCCTC...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGCACTTCCGTGTTACTaGCTGTGGGACCCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRALPCY*LWDPRG
Trigger: CCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGC...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGGGTGTTCGCTGGGCTTaGATGGAGCCTGTGTGCCTG +
Preference number: 2 (lower is better)
Translates to: VFWSTTASSERTLPWKEAGVRWA*MEPVCL
Trigger: CAGGCACACAGGCTCCATCCAAGCCCAGCGAACACC...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCTTCGGGCTGTTGTCATaGGATGGCACTTTTCCCAGC +
Preference number: 2 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTFGLLS*DGTFPS
Trigger: GCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAA...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR TCA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTCACCACTGCCTCTTCTaGGAGGACTCTCCCCTGGAA +
Preference number: 2 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGHHCLF*EDSPLE
Trigger: TTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTG...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGCACCACTGCCTCTTCTaGGAGGACTCTCCCCTGGAA +
Preference number: 2 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRHHCLF*EDSPLE
Trigger: TTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTG...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGAGGATGGTGGATGGGTaGGTGCGAATCTGGGCAGAC +
Preference number: 2 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGRMVDG*VRIWAD
Trigger: GTCTGCCCAGATTCGCACTCACCCATCCACCATCCT...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGGTCGGCAGCGCTTGTTaGGCATGCTGGCTGCCGGGT +
Preference number: 2 (lower is better)
Translates to: GRRSIESLHEVICQDQGKVGSAC*ACWLPG
Trigger: ACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGAC...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGGGGGAGCTGGGCCAGTaGTGCAGCAGGTGTTCGCTG +
Preference number: 2 (lower is better)
Translates to: GRRSIESLHEVICQDQGKGELGQ*CSRCSL
Trigger: CAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCC...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCCGGCAGTTGAAGGTCTaGCCCACTGCCCAGTGCACT +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERRQLKV*PTAQCT
Trigger: AGTGCACTGGGCAGTGGGGCAGACCTTCAACTGCCG...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCCCGTGTTACTGGCTGTaGGACCCCAGAGGGACTCCT +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERPCYWL*DPRGTP
Trigger: AGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGG...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGGCACTTCCGTGTTACTaGCTGTGGGACCCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRALPCY*LWDPRG
Trigger: CCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGC...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGTGGAGCCTGTGTGCCTaGACCAGCAAAGCACTTCCG +
Preference number: 2 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRWSLCA*TSKALP
Trigger: CGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCA...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCTTCGCTGGGCTTGGATaGAGCCTGTGTGCCTGGACC +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERFAGLG*SLCAWT
Trigger: GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAA...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGGGTGTTCGCTGGGCTTaGATGGAGCCTGTGTGCCTG +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRGVRWA*MEPVCL
Trigger: CAGGCACACAGGCTCCATCCAAGCCCAGCGAACACC...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTGTTCTCCCTGCTTGCTaGAGACAGGGGCCAAGTCCT +
Preference number: 2 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCVLPAC*RQGPSP
Trigger: AGGACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAAC...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAATCCGAATGTGGGAGTaGACACCACTGTTGTCATGG +
Preference number: 2 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPIRMWE*TPLLSW
Trigger: CCATGACAACAGTGGTGTCCACTCCCACATTCGGAT...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTGAGGACGTAGGACCCTaGGATCCGAATGTGGGAGTG +
Preference number: 2 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCEDVGP*DPNVGV
Trigger: CACTCCCACATTCGGATCCCAGGGTCCTACGTCCTC...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGGGATGTACGTGGGAGTaGGGATCTGTGGGAGCGCTG +
Preference number: 2 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRGCTWE*GSVGAL
Trigger: CAGCGCTCCCACAGATCCCCACTCCCACGTACATCC...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTTGCTGGAGAGAAGGTaGACGGACACCCAGGGTTGG +
Preference number: 2 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGLLERR*TDTQGW
Trigger: CCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAA...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp TCCAGCGGTCCGTCTCTGGGTCGTACATCTCCACTGAGCTTAGGTTaGACTGTCCATCGTAACCTCCCACTGCATAGAGGCGCCCACAGC +
Preference number: 2 (lower is better)
Translates to: SSGPSLGRTSPLSLG*TVHRNLPLHRGAHS
Trigger: GCTGTGGGCGCCTCTATGCAGTGGGAGGTTACGATGGACAGTCAAACCTAAGCTCAGTGGAGATGTACGACCCAGAGACGGACCGCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR TCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGCACCACTGCCTCTTCTaGGAGGACTCTCCCCTGGAA +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWHHCLF*EDSPLE
Trigger: TTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTG...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCCAGTCAAGAATGTCCTaGTTTCAGACACACTGTGGG +
Preference number: 2 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTQSRMS*FQTHCG
Trigger: CCCACAGTGTGTCTGAAATCAGGACATTCTTGACTG...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGAAGGATGGTGGATGGGTaGGTGCGAATCTGGGCAGAC +
Preference number: 2 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGRMVDG*VRIWAD
Trigger: GTCTGCCCAGATTCGCACTCACCCATCCACCATCCT...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGAGGATGGTGGATGGGTaGGTGCGAATCTGGGCAGAC +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWRMVDG*VRIWAD
Trigger: GTCTGCCCAGATTCGCACTCACCCATCCACCATCCT...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTTTTGGCAGCGGCAGTTaGAGGTCTGCCCCACTGCCC +
Preference number: 2 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLFGSGS*RSAPLP
Trigger: GGGCAGTGGGGCAGACCTTCAACTGCCGCTGCCAAA...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGGCCATCGTGGCCTCCTaGCACATATATCCTGCCCTC +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRAIVAS*HIYPAL
Trigger: GAGGGCAGGATATATGTGTCAGGAGGCCACGATGGC...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR TCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTCCTCTCCTTAGATGGTaGGAAGAGGGATGCAGCCCA +
Preference number: 2 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCPLLRW*EEGCSP
Trigger: TGGGCTGCATCCCTCTTCTCACCATCTAAGGAGAGG...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTTGGATGGAGCCTGTGTaGCTGGACCAGCAAAGCACT +
Preference number: 2 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCWMEPV*LDQQST
Trigger: AGTGCTTTGCTGGTCCAGGCACACAGGCTCCATCCA...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTGAGCTGGGCCAGTGCTaGAGCAGGTGTTCGCTGGGC +
Preference number: 2 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSELGQC*SRCSLG
Trigger: GCCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTC...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGGGGCCAAGTCCTCTGTaGCCCTGTCGAAGGGAGAGC +
Preference number: 2 (lower is better)
Translates to: GRRSIESLHEVICQDQGKGPSPL*PCRRES
Trigger: GCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCC...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGACTTCTGTTCTCCCTaGTTGCTGGAGACAGGGGCC +
Preference number: 2 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQDFCSP*LLETGA
Trigger: GGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAAGTC...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTGCCCCACTGCCCAGTaGACTGGTAAGAGACAGTCT +
Preference number: 2 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGCPTAQ*TGKRQS
Trigger: AGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCA...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGGGGATGCAGTCTGCTTaGATCGTGAGGACCCAGGAG +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWGMQSA*IVRTQE
Trigger: CTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCC...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGCCTGGGATCCGAATGTaGGAGTGGACACCACTGTTG +
Preference number: 2 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRPGIRM*EWTPLL
Trigger: CAACAGTGGTGTCCACTCCCACATTCGGATCCCAGG...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCGAGGACGTAGGACCCTaGGATCCGAATGTGGGAGTG +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWEREDVGP*DPNVGV
Trigger: CACTCCCACATTCGGATCCCAGGGTCCTACGTCCTC...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCATTTCAGACACACTGTaGGATTCAGAGGAAACCCCG +
Preference number: 2 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTISDTL*DSEETP
Trigger: CGGGGTTTCCTCTGAATCCCACAGTGTGTCTGAAAT...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGTTGCTGGAGAGAAGGTaGACGGACACCCAGGGTTGG +
Preference number: 2 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRLLERR*TDTQGW
Trigger: CCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAA...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGTTGCTGGAGAGAAGGTaGACGGACACCCAGGGTTGG +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRLLERR*TDTQGW
Trigger: CCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAA...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAAAGAAACCAATCAGGTaGACAGTGGAACAGACCGGA +
Preference number: 2 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPKKPIR*TVEQTG
Trigger: TCCGGTCTGTTCCACTGTCCACCTGATTGGTTTCTT...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp CTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCCTATGCTaGTACCAGATCCCTAGCCCACCACGTCCCATCCTCTCCTTAGAT +
Preference number: 2 (lower is better)
Translates to: LPLLRGLSPGRKRLC*YQIPSPPRPILSLD
Trigger: ATCTAAGGAGAGGATGGGACGTGGTGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGTCGCAGCATGCTAGCTaGTGTAGCTGCACCACCACA +
Preference number: 2 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRSQHAS*CSCTTT
Trigger: TGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGATCTGTTCTCCCTGCTTaGTGGAGACAGGGGCCAAGT +
Preference number: 2 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGSVLPA*WRQGPS
Trigger: ACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGA...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGAGACATGTTGTTTCTTaGTGGCCAAAAAGGGAAAGG +
Preference number: 2 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGRHVVS*WPKRER
Trigger: CCTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCT...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTTACACCCCGTCTTCTaGTCCACCACTGCCTCTTCT +
Preference number: 2 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGLHPVF*STTASS
Trigger: AGAAGAGGCAGTGGTGGACCAGAAGACGGGGTGTAA...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGACCTGGGATCCGAATGTaGGAGTGGACACCACTGTTG +
Preference number: 2 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGPGIRM*EWTPLL
Trigger: CAACAGTGGTGTCCACTCCCACATTCGGATCCCAGG...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTGGATGTACGTGGGAGTaGGGATCTGTGGGAGCGCTG +
Preference number: 2 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLGCTWE*GSVGAL
Trigger: CAGCGCTCCCACAGATCCCCACTCCCACGTACATCC...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTGCAGGAAGGTTAACCTaGCAGCAGCAGGCCGGGGTG +
Preference number: 2 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLAGRLT*QQQAGV
Trigger: CACCCCGGCCTGCTGCTGCCAGGTTAACCTTCCTGC...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp CATATATCCTGCCCTCAAAGACTGTCACCCCAGCAGCACTCCGGTTaGAGCTCATCGGAGTCACCACTGTCCACTTGTCCGTCTCAGGTG +
Preference number: 2 (lower is better)
Translates to: HISCPQRLSPQQHSG*SSSESPLSTCPSQV
Trigger: CACCTGAGACGGACAAGTGGACAGTGGTGACTCCGATGAGCTCAAACCGGAGTGCTGCTGGGGTGACAGTCTTTGAGGGCAGGATATATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR TCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGAGGGAGGAGGAGCATTaGGTCTCTTCACGAGGTCAT +
Preference number: 2 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRREEEH*VSSRGH
Trigger: ATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCCT...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGAGGAAGGAAGCGCCTATaGTTGTACCAGATCCCTAGC +
Preference number: 2 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGGRKRL*LYQIPS
Trigger: GCTAGGGATCTGGTACAAGCATAGGCGCTTCCTTCC...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAAGGGGAGCTGGGCCAGTaGTGCAGCAGGTGTTCGCTG +
Preference number: 2 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKGELGQ*CSRCSL
Trigger: CAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCC...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAACGGCCACAGCAGGGCTaGAGGAGAAGGGAAGGCTCG +
Preference number: 2 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKRPQQG*RRREGS
Trigger: CGAGCCTTCCCTTCTCCTGCAGCCCTGCTGTGGCCG...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGGACTTCTGTTCTCCCTaGTTGCTGGAGACAGGGGCC +
Preference number: 2 (lower is better)
Translates to: GRRSIESLHEVICQDQGKDFCSP*LLETGA
Trigger: GGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAAGTC...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGTGGTGGATGGGTGAGTaGGAATCTGGGCAGACATGT +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRWWMGE*ESGQTC
Trigger: ACATGTCTGCCCAGATTCGCACTCACCCATCCACCA...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTCGGCAGTTGAAGGTCTaGCCCACTGCCCAGTGCACT +
Preference number: 2 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSRQLKV*PTAQCT
Trigger: AGTGCACTGGGCAGTGGGGCAGACCTTCAACTGCCG...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGCCCGGCTCTTTACATTaGAGGGAACAAGAGTCCTTC +
Preference number: 2 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGPGSLH*REQESF
Trigger: GAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGG...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTAGGGGCAGGAAGAAATaGTGGCGCTCCACTGGGAGC +
Preference number: 2 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSRGRKK*WRSTGS
Trigger: GCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCCCCT...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGCCATGGCACTTCGCTTaGTATTCATGCTCCCCACTC +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWPWHFA*YSCSPL
Trigger: GAGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGG...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAAGTTGAGCATGCTGGCTaGCGGGTGCCAGGTGGCCGT +
Preference number: 2 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKVEHAG*RVPGGR
Trigger: ACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAAC...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATGGTGTTCGCTGGGCTTaGATGGAGCCTGTGTGCCTG +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENGVRWA*MEPVCL
Trigger: CAGGCACACAGGCTCCATCCAAGCCCAGCGAACACC...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGAAAGGCCCATCTTGCTaGAGAGAAGGTGGACGGACA +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWKGPSC*REGGRT
Trigger: TGTCCGTCCACCTTCTCTCCAGCAAGATGGGCCTTT...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGGAGACAGTCTCCCTCTaGGTCCTTCTGTGCTATGGT +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWETVSL*VLLCYG
Trigger: ACCATAGCACAGAAGGACCCAGAGGGAGACTGTCTC...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTGGCAGGAAGAAATGCTaGCGCTCCACTGGGAGCCTA +
Preference number: 2 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLGRKKC*RSTGSL
Trigger: TAGGCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCC...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAGCAGGAAGGTTAACCTaGCAGCAGCAGGCCGGGGTG +
Preference number: 2 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAAGRLT*QQQAGV
Trigger: CACCCCGGCCTGCTGCTGCCAGGTTAACCTTCCTGC...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTAGAGGCGCCCACAGCTaGCCACGAGGGAGACCCGGC +
Preference number: 2 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTRGAHS*PRGRPG
Trigger: GCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCT...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CAA 90 bp GTAAAGGCCCATCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTaGGCAAATGGATGGAAAATAGCGGAATGGCAGGGAAGACGAGTC +
Preference number: 2 (lower is better)
Translates to: VKAHLAGEKVDGHPG*ANGWKIAEWQGRRV
Trigger: GACTCGTCTTCCCTGCCATTCCGCTATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGATGGGCCTTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp ACACGGCTTCGGGCTGTTGTCATGGGATGGCACTTTTCCCAGCGATaGGCGATAGGGTCGAACACTTCCACCACATTCAGGGAATCACCT +
Preference number: 2 (lower is better)
Translates to: TRLRAVVMGWHFSQR*AIGSNTSTTFRESP
Trigger: AGGTGATTCCCTGAATGTGGTGGAAGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAAGCCGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTGCTAGCTGCTGTAGCTaGACCACCACAGGCAGTGAC +
Preference number: 2 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLASCCS*TTTGSD
Trigger: GTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGC...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTTCGCAGCATGCTAGCTaGTGTAGCTGCACCACCACA +
Preference number: 2 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLSQHAS*CSCTTT
Trigger: TGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCTGACACATATATCCTaGCCTCAAAGACTGTCACCC +
Preference number: 2 (lower is better)
Translates to: VFWSTTASSERTLPWKEALTHIS*PQRLSP
Trigger: GGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAG...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGTCCCTTCCTGTTTCTTaGGGACAAGTGGAGAAAGAC +
Preference number: 2 (lower is better)
Translates to: VFWSTTASSERTLPWKEASLPVS*GQVEKD
Trigger: GTCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGA...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCCTGGGATCCGAATGTaGGAGTGGACACCACTGTTG +
Preference number: 2 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLPGIRM*EWTPLL
Trigger: CAACAGTGGTGTCCACTCCCACATTCGGATCCCAGG...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTGGGTTGGCAAATGGATaGAAAATAGCGGAATGGCAG +
Preference number: 2 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGGLANG*KIAEWQ
Trigger: CTGCCATTCCGCTATTTTCCATCCATTTGCCAACCC...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGGCTGTTGTCATGGGATaGCACTTTTCCCAGCGATTG +
Preference number: 2 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRAVVMG*HFSQRL
Trigger: CAATCGCTGGGAAAAGTGCCATCCCATGACAACAGC...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATTGGATGGAGCCTGTGTaGCTGGACCAGCAAAGCACT +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENWMEPV*LDQQST
Trigger: AGTGCTTTGCTGGTCCAGGCACACAGGCTCCATCCA...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTCGGCCACAGCAGGGCTaGAGGAGAAGGGAAGGCTCG +
Preference number: 2 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTRPQQG*RRREGS
Trigger: CGAGCCTTCCCTTCTCCTGCAGCCCTGCTGTGGCCG...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGTGGTGGATGGGTGAGTaGGAATCTGGGCAGACATGT +
Preference number: 2 (lower is better)
Translates to: GRRSIESLHEVICQDQGKWWMGE*ESGQTC
Trigger: ACATGTCTGCCCAGATTCGCACTCACCCATCCACCA...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGAACATTATTTTCAAGTaGTTAGAGCAGAGGCCCGGC +
Preference number: 2 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGNIIFK*LEQRPG
Trigger: GCCGGGCCTCTGCTCTAAGCACTTGAAAATAATGTT...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTGAGACACCACTGGTCTaGCACAGAGCTGTACATCTC +
Preference number: 2 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLETPLV*HRAVHL
Trigger: GAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTC...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGTCCCTTCCTGTTTCTTaGGGACAAGTGGAGAAAGAC +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRSLPVS*GQVEKD
Trigger: GTCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGA...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGATTTCAGACACACTGTaGGATTCAGAGGAAACCCCG +
Preference number: 2 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQISDTL*DSEETP
Trigger: CGGGGTTTCCTCTGAATCCCACAGTGTGTCTGAAAT...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGGGGTTGGCAAATGGATaGAAAATAGCGGAATGGCAG +
Preference number: 2 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRGLANG*KIAEWQ
Trigger: CTGCCATTCCGCTATTTTCCATCCATTTGCCAACCC...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp TATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTaGGCAGCGGCAGTTGAAGGTCTGCCCCACTGCCCAGTGCACTGG +
Preference number: 2 (lower is better)
Translates to: YILLVATGRILGKQI*AAAVEGLPHCPVHW
Trigger: CCAGTGCACTGGGCAGTGGGGCAGACCTTCAACTGCCGCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCACCCCCACAGCGTAGATaGGCCCAGCGATGGACGTGC +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPPPQRR*AQRWTC
Trigger: GCACGTCCATCGCTGGGCTCATCTACGCTGTGGGGG...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGGGCCAAGTCCTCTGTaGCCCTGTCGAAGGGAGAGC +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSGPSPL*PCRRES
Trigger: GCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCAACATTATTTTCAAGTaGTTAGAGCAGAGGCCCGGC +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERNIIFK*LEQRPG
Trigger: GCCGGGCCTCTGCTCTAAGCACTTGAAAATAATGTT...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTTCGCTGGGCTTGGATaGAGCCTGTGTGCCTGGACC +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCFAGLG*SLCAWT
Trigger: GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCTTTCTTGGGGACAAGTaGAGAAAGACCTCACTGGAT +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERFLGDK*RKTSLD
Trigger: ATCCAGTGAGGTCTTTCTCCACTTGTCCCCAAGAAA...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGATTTCTTGGGGACAAGTaGAGAAAGACCTCACTGGAT +
Preference number: 2 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGFLGDK*RKTSLD
Trigger: ATCCAGTGAGGTCTTTCTCCACTTGTCCCCAAGAAA...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGTCTGTTTCCGTCCTGTaGAAAATGTTCACTTCAAGC +
Preference number: 2 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRSVSVL*KMFTSS
Trigger: GCTTGAAGTGAACATTTTCCACAGGACGGAAACAGA...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCGAGGACGTAGGACCCTaGGATCCGAATGTGGGAGTG +
Preference number: 2 (lower is better)
Translates to: RQISHRPQTGEYKNVSVREDVGP*DPNVGV
Trigger: CACTCCCACATTCGGATCCCAGGGTCCTACGTCCTC...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGGACCAAGCTGGTCCATaGCTGGTAGGAGCAAGCCCC +
Preference number: 2 (lower is better)
Translates to: HCREQESFLLNLWQLHTLDQAGP*LVGASP
Trigger: GGGGCTTGCTCCTACCAGCCATGGACCAGCTTGGTC...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTGAGACAGTCTCCCTCTaGGTCCTTCTGTGCTATGGT +
Preference number: 2 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLETVSL*VLLCYG
Trigger: ACCATAGCACAGAAGGACCCAGAGGGAGACTGTCTC...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTGCACGACTGTCCCCATaGCACTTCGCTTGCTATTCA +
Preference number: 2 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSARLSP*HFACYS
Trigger: TGAATAGCAAGCGAAGTGCCATGGGGACAGTCGTGC...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR TCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGAGGTAACCATGGGGTaGCAGTTGGGAGCTCGGGCA +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSEVTMG*QLGARA
Trigger: TGCCCGAGCTCCCAACTGTCACCCCATGGTTACCTC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCAAGAGTCCTTCCTTCTaGATCTATGGCAATTGCACA +
Preference number: 2 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERKSPSF*IYGNCT
Trigger: TGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTT...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCTCGCAGCATGCTAGCTaGTGTAGCTGCACCACCACA +
Preference number: 2 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRSQHAS*CSCTTT
Trigger: TGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAATCTGTTCTCCCTGCTTaGTGGAGACAGGGGCCAAGT +
Preference number: 2 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKSVLPA*WRQGPS
Trigger: ACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGA...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATCTGTTCTCCCTGCTTaGTGGAGACAGGGGCCAAGT +
Preference number: 2 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKSVLPA*WRQGPS
Trigger: ACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGA...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGTGTAGGCCTCCACGGTaGTCAGCCGCAACTGACCAT +
Preference number: 2 (lower is better)
Translates to: HCREQESFLLNLWQLHTLCRPPR*SAATDH
Trigger: ATGGTCAGTTGCGGCTGAGCACCGTGGAGGCCTACA...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCACCGTGTTACTGGCTGTaGGACCCCAGAGGGACTCCT +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSPCYWL*DPRGTP
Trigger: AGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGG...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGGTGTTCGCTGGGCTTaGATGGAGCCTGTGTGCCTG +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSGVRWA*MEPVCL
Trigger: CAGGCACACAGGCTCCATCCAAGCCCAGCGAACACC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTGTGGGAGCGCTGGGTaGTGTAGGGAGGTAACCATG +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCCGSAG*CREVTM
Trigger: CATGGTTACCTCCCTACACCACCCAGCGCTCCCACA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGGATGTACGTGGGAGTaGGGATCTGTGGGAGCGCTG +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSGCTWE*GSVGAL
Trigger: CAGCGCTCCCACAGATCCCCACTCCCACGTACATCC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp TTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATaGCACACACTGGGAAACCTGATGGTCTGGGGAAAGGGACCACCC +
Preference number: 2 (lower is better)
Translates to: LHCREQESFLLNLWQ*HTLGNLMVWGKGPP
Trigger: GGGTGGTCCCTTTCCCCAGACCATCAGGTTTCCCAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAAAGACCTCCTGCCCATaGGTGCTCCCTGTGGCAAGG +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPKTSCP*VLPVAR
Trigger: CCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTT...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAGAGGTAACCATGGGGTaGCAGTTGGGAGCTCGGGCA +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPEVTMG*QLGARA
Trigger: TGCCCGAGCTCCCAACTGTCACCCCATGGTTACCTC...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGCCTAGATCAAAACACTaGCTTGATGGTTCTTGGAAA +
Preference number: 2 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWPRSKH*LDGSWK
Trigger: TTTCCAAGAACCATCAAGTCAGTGTTTTGATCTAGG...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGCTAGCTGCTGTAGCTaGACCACCACAGGCAGTGAC +
Preference number: 2 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTASCCS*TTTGSD
Trigger: GTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGC...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGCTAGCTGCTGTAGCTaGACCACCACAGGCAGTGAC +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSASCCS*TTTGSD
Trigger: GTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGACTTCTGTTCTCCCTaGTTGCTGGAGACAGGGGCC +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSDFCSP*LLETGA
Trigger: GGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAAGTC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTGCCCCACTGCCCAGTaGACTGGTAAGAGACAGTCT +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCCPTAQ*TGKRQS
Trigger: AGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAGAGGACTTAAGCACCTaGAAAAACTGTCCCTCTGGC +
Preference number: 2 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAEDLST*KNCPSG
Trigger: GCCAGAGGGACAGTTTTTCCAGGTGCTTAAGTCCTC...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCGCACTTCCGTGTTACTaGCTGTGGGACCCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSALPCY*LWDPRG
Trigger: CCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGC...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATTCCCTTCCTGTTTCTTaGGGACAAGTGGAGAAAGAC +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENSLPVS*GQVEKD
Trigger: GTCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGA...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAGACCAAGCTGGTCCATaGCTGGTAGGAGCAAGCCCC +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPDQAGP*LVGASP
Trigger: GGGGCTTGCTCCTACCAGCCATGGACCAGCTTGGTC...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATGGGTTGGCAAATGGATaGAAAATAGCGGAATGGCAG +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENGLANG*KIAEWQ
Trigger: CTGCCATTCCGCTATTTTCCATCCATTTGCCAACCC...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATCCCAGGGTTGGCAAATaGATGGAAAATAGCGGAATG +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENPRVGK*MENSGM
Trigger: CATTCCGCTATTTTCCATCCATTTGCCAACCCTGGG...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTCTTGTCCGTCTCAGGTaGGTAGGTCTCCACAGAGTT +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCLVRLR*VGLHRV
Trigger: AACTCTGTGGAGACCTACTCACCTGAGACGGACAAG...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR GCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAGACTTCTGTTCTCCCTaGTTGCTGGAGACAGGGGCC +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPDFCSP*LLETGA
Trigger: GGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAAGTC...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTGGTGGATGGGTGAGTaGGAATCTGGGCAGACATGT +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCWWMGE*ESGQTC
Trigger: ACATGTCTGCCCAGATTCGCACTCACCCATCCACCA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTTACACCCCGTCTTCTaGTCCACCACTGCCTCTTCT +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCLHPVF*STTASS
Trigger: AGAAGAGGCAGTGGTGGACCAGAAGACGGGGTGTAA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCGTTCTCCCTGCTTGCTaGAGACAGGGGCCAAGTCCT +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSVLPAC*RQGPSP
Trigger: AGGACTTGGCCCCTGTCTCCAGCAAGCAGGGAGAAC...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCATGTGGGAGCGCTGGGTaGTGTAGGGAGGTAACCATG +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPCGSAG*CREVTM
Trigger: CATGGTTACCTCCCTACACCACCCAGCGCTCCCACA...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCTTGCTGGAGAGAAGGTaGACGGACACCCAGGGTTGG +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSLLERR*TDTQGW
Trigger: CCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAA...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAAAGAAACCAATCAGGTaGACAGTGGAACAGACCGGA +
Preference number: 2 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAKKPIR*TVEQTG
Trigger: TCCGGTCTGTTCCACTGTCCACCTGATTGGTTTCTT...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGTTCCTTCTGAATCTATaGCAATTGCACACACTGGGA +
Preference number: 2 (lower is better)
Translates to: GRRSIESLHEVICQDQGKFLLNL*QLHTLG
Trigger: TCCCAGTGTGTGCAATTGCCATAGATTCAGAAGGAA...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 90 bp GTTTCTGTTCGCTTGTGTGCTCAGAGCCTAGATCAAAACACTGACTaGATGGTTCTTGGAAACACTGTCTACACTAGGAGGTGGGAGTGG +
Preference number: 2 (lower is better)
Translates to: VSVRLCAQSLDQNTD*MVLGNTVYTRRWEW
Trigger: CCACTCCCACCTCCTAGTGTAGACAGTGTTTCCAAGAACCATCAAGTCAGTGTTTTGATCTAGGCTCTGAGCACACAAGCGAACAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCCAGTCAAGAATGTCCTaGTTTCAGACACACTGTGGG +
Preference number: 2 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRQSRMS*FQTHCG
Trigger: CCCACAGTGTGTCTGAAATCAGGACATTCTTGACTG...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTAGACATGTTGTTTCTTaGTGGCCAAAAAGGGAAAGG +
Preference number: 2 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLRHVVS*WPKRER
Trigger: CCTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCT...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTTTCGCTTGCTATTCATaGTCCCCACTCGGGTCCATG +
Preference number: 2 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTFACYS*SPLGSM
Trigger: CATGGACCCGAGTGGGGAGCATGAATAGCAAGCGAA...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCATTACACCCCGTCTTCTaGTCCACCACTGCCTCTTCT +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSLHPVF*STTASS
Trigger: AGAAGAGGCAGTGGTGGACCAGAAGACGGGGTGTAA...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATTCTGTTTCCGTCCTGTaGAAAATGTTCACTTCAAGC +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENSVSVL*KMFTSS
Trigger: GCTTGAAGTGAACATTTTCCACAGGACGGAAACAGA...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATACACCACTGTTGTCATaGTTGATGGTTCTCCATGTA +
Preference number: 2 (lower is better)
Translates to: SCWREGGRTPRVGKWMENTPLLS*LMVLHV
Trigger: TACATGGAGAACCATCAACCATGACAACAGTGGTGT...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTAAAGGCCCATCTTGCTaGAGAGAAGGTGGACGGACA +
Preference number: 2 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTKGPSC*REGGRT
Trigger: TGTCCGTCCACCTTCTCTCCAGCAAGATGGGCCTTT...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCGGAAGGAAGCGCCTATaGTTGTACCAGATCCCTAGC +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSGRKRL*LYQIPS
Trigger: GCTAGGGATCTGGTACAAGCATAGGCGCTTCCTTCC...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAAGACATGTTGTTTCTTaGTGGCCAAAAAGGGAAAGG +
Preference number: 2 (lower is better)
Translates to: ARLFTLQGTRVLPSESMARHVVS*WPKRER
Trigger: CCTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCT...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGAGGACTTAAGCACCTaGAAAAACTGTCCCTCTGGC +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSEDLST*KNCPSG
Trigger: GCCAGAGGGACAGTTTTTCCAGGTGCTTAAGTCCTC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCTTTCTTGGGGACAAGTaGAGAAAGACCTCACTGGAT +
Preference number: 2 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRFLGDK*RKTSLD
Trigger: ATCCAGTGAGGTCTTTCTCCACTTGTCCCCAAGAAA...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGTCTTTCCAGTGTCCTTaGGTGATGCCTGTTCTCACA +
Preference number: 2 (lower is better)
Translates to: HCREQESFLLNLWQLHTLSFQCP*VMPVLT
Trigger: TGTGAGAACAGGCATCACCCAAGGACACTGGAAAGA...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGATGCCTGTTCTCACATaGTCCTACAGTTCTGACACT +
Preference number: 2 (lower is better)
Translates to: HCREQESFLLNLWQLHTLMPVLT*SYSSDT
Trigger: AGTGTCAGAACTGTAGGATCATGTGAGAACAGGCAT...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAGAGGACTTAAGCACCTaGAAAAACTGTCCCTCTGGC +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPEDLST*KNCPSG
Trigger: GCCAGAGGGACAGTTTTTCCAGGTGCTTAAGTCCTC...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTCCGTGTTACTGGCTGTaGGACCCCAGAGGGACTCCT +
Preference number: 2 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFPCYWL*DPRGTP
Trigger: AGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGG...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTTTCGCTGGGCTTGGATaGAGCCTGTGTGCCTGGACC +
Preference number: 2 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFFAGLG*SLCAWT
Trigger: GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAA...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAATCCGAATGTGGGAGTaGACACCACTGTTGTCATGG +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPIRMWE*TPLLSW
Trigger: CCATGACAACAGTGGTGTCCACTCCCACATTCGGAT...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTAGGATGGTGGATGGGTaGGTGCGAATCTGGGCAGAC +
Preference number: 2 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFRMVDG*VRIWAD
Trigger: GTCTGCCCAGATTCGCACTCACCCATCCACCATCCT...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAGAAAAACTGTCCCTCTaGCAAGCTCACATTACACCC +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPEKLSL*QAHITP
Trigger: GGGTGTAATGTGAGCTTGCCAGAGGGACAGTTTTTC...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCATTTCTTGGGGACAAGTaGAGAAAGACCTCACTGGAT +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSFLGDK*RKTSLD
Trigger: ATCCAGTGAGGTCTTTCTCCACTTGTCCCCAAGAAA...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTACACCACTGTTGTCATaGTTGATGGTTCTCCATGTA +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCTPLLS*LMVLHV
Trigger: TACATGGAGAACCATCAACCATGACAACAGTGGTGT...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCATTTCAGACACACTGTaGGATTCAGAGGAAACCCCG +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSISDTL*DSEETP
Trigger: CGGGGTTTCCTCTGAATCCCACAGTGTGTCTGAAAT...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCGGGTTGGCAAATGGATaGAAAATAGCGGAATGGCAG +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSGLANG*KIAEWQ
Trigger: CTGCCATTCCGCTATTTTCCATCCATTTGCCAACCC...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCATCTGTTTCCGTCCTGTaGAAAATGTTCACTTCAAGC +
Preference number: 2 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSSVSVL*KMFTSS
Trigger: GCTTGAAGTGAACATTTTCCACAGGACGGAAACAGA...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCAGACATGTTGTTTCTTaGTGGCCAAAAAGGGAAAGG +
Preference number: 2 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSRHVVS*WPKRER
Trigger: CCTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCT...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR GCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTAGAAAATCTCTTCCTTaGAGCAGCAAAAGACATTTC +
Preference number: 2 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCRKSLP*SSKRHF
Trigger: GAAATGTCTTTTGCTGCTGCAAGGAAGAGATTTTCT...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTTTACACCCCGTCTTCTaGTCCACCACTGCCTCTTCT +
Preference number: 2 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFLHPVF*STTASS
Trigger: AGAAGAGGCAGTGGTGGACCAGAAGACGGGGTGTAA...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAACACCACTGTTGTCATaGTTGATGGTTCTCCATGTA +
Preference number: 2 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPTPLLS*LMVLHV
Trigger: TACATGGAGAACCATCAACCATGACAACAGTGGTGT...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR TCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTACATCTCAGCAATACTaGGGAAGCCAGAGCCATCAT +
Preference number: 2 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFTSQQY*GSQSHH
Trigger: ATGATGGCTCTGGCTTCCTCAGTATTGCTGAGATGT...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTCCCAGGGTTGGCAAATaGATGGAAAATAGCGGAATG +
Preference number: 2 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFPRVGK*MENSGM
Trigger: CATTCCGCTATTTTCCATCCATTTGCCAACCCTGGG...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR TCA 72 bp TTCCCAGGGAGGCGGCTCCGTGTCGGCAGCGCTTGTTaGGCATGCTGGCTGCCGGGTGCCAGGTGGCCGTGT +
Preference number: 3 (lower is better)
Translates to: FPGRRLRVGSAC*ACWLPGARWPC
Trigger: ACACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 72 bp AGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTaGTCCCTGTGGCAAGGGGGAGCTGGGCCAGTGCTG +
Preference number: 3 (lower is better)
Translates to: REGSAGRPPAHE*SLWQGGAGPVL
Trigger: CAGCACTGGCCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp CATCGTAACCTCCCACTGCATAGAGGCGCCCACAGCTaGCCACGAGGGAGACCCGGCTCCGGCGTGTGTGCA +
Preference number: 3 (lower is better)
Translates to: HRNLPLHRGAHS*PRGRPGSGVCA
Trigger: TGCACACACGCCGGAGCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCTATGCAGTGGGAGGTTACGATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 72 bp ATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGCCAGTaGTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCC +
Preference number: 3 (lower is better)
Translates to: MSAPCGKGELGQ*CSRCSLGLDGA
Trigger: GGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGGCCCAGCTCCCCCTTGCCACAGGGAGCACTCAT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp CAGCTGGCCACGAGGGAGACCCGGCTCCGGCGTGTGTaGATGGGTACTATGAGACACCACTGGTCTGCCACA +
Preference number: 3 (lower is better)
Translates to: QLATRETRLRRV*MGTMRHHWSAT
Trigger: TGTGGCAGACCAGTGGTGTCTCATAGTACCCATGCACACACGCCGGAGCCGGGTCTCCCTCGTGGCCAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CCA 72 bp AGAGAGGAGAAGAGGAAGTGCAGTGGCCAGACCCCATaGCCCACCAGGCGTGTCGGACCCACCTCCTGCTAC +
Preference number: 3 (lower is better)
Translates to: REEKRKCSGQTP*PTRRVGPTSCY
Trigger: GTAGCAGGAGGTGGGTCCGACACGCCTGGTGGGCCATGGGGTCTGGCCACTGCACTTCCTCTTCTCCTCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp GCTTTACCCACACTTCCCAAGCGGCCACAGCAGGGCTaGAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCT +
Preference number: 3 (lower is better)
Translates to: ALPTLPKRPQQG*RRREGSAGRPP
Trigger: AGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCAGCCCTGCTGTGGCCGCTTGGGAAGTGTGGGTAAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp GAGCCCGTGCACTCGCAGCATGCTAGCTGCTGTAGCTaGACCACCACAGGCAGTGACAACACCAGGGTGTCC +
Preference number: 3 (lower is better)
Translates to: EPVHSQHASCCS*TTTGSDNTRVS
Trigger: GGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGAGTGCACGGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp CCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTaGACTCGCAGCATGCTAGCTGCTGTAGCTGCACCA +
Preference number: 3 (lower is better)
Translates to: PSPLCPCRRESP*TRSMLAAVAAP
Trigger: TGGTGCAGCTACAGCAGCTAGCATGCTGCGAGTGCACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GGCTGCAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCAGGAAGCGCCTATGCTaGTACCAGATCCCTAGCCCA +
Preference number: 3 (lower is better)
Translates to: GCRRREGSAGRPPAHECSRKRLC*YQIPSP
Trigger: TGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCT...GGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGCCGTGTCGGCAGCGCTaGTTGAGCATGCTGGCTGCC +
Preference number: 3 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQPCRQR*LSMLAA
Trigger: GGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGG...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 72 bp TCGAAGGGAGAGCCCGTGCACTCGCAGCATGCTAGCTaGTGTAGCTGCACCACCACAGGCAGTGACAACACC +
Preference number: 3 (lower is better)
Translates to: SKGEPVHSQHAS*CSCTTTGSDNT
Trigger: GGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGAGTGCACGGGCTCTCCCTTCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp GGAGATGGCGTATCATCTCTAGGGATGCAGTCTGCTTaGATCGTGAGGACCCAGGAGGCCCACCTGGGAGCC +
Preference number: 3 (lower is better)
Translates to: GDGVSSLGMQSA*IVRTQEAHLGA
Trigger: GGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCTAGAGATGATACGCCATCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp GTGGGGAGATGGCGTATCATCTCTAGGGATGCAGTCTaGTTGCATCGTGAGGACCCAGGAGGCCCACCTGGG +
Preference number: 3 (lower is better)
Translates to: VGRWRIISRDAV*LHREDPGGPPG
Trigger: CCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCTAGAGATGATACGCCATCTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCACACTTTTCCCAGCGATaGGCGATAGGGTCGAACACT +
Preference number: 3 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPHFSQR*AIGSNT
Trigger: AGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTG...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR TCA 72 bp GGGAGACCCGGCTCCGGCGTGTGTGCATGGGTACTATaGGACACCACTGGTCTGCCACAGAGCTGTACATCT +
Preference number: 3 (lower is better)
Translates to: GRPGSGVCAWVL*DTTGLPQSCTS
Trigger: AGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGTACCCATGCACACACGCCGGAGCCGGGTCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 72 bp GCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTaGCTGGACCAGCAAAGCACTTCCGTGTTACTGGCT +
Preference number: 3 (lower is better)
Translates to: AAGVRWAWMEPV*LDQQSTSVLLA
Trigger: AGCCAGTAACACGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp CAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTaGACCAGCAAAGCACTTCCGTGTTACTGGCTGTGG +
Preference number: 3 (lower is better)
Translates to: QVFAGLGWSLCA*TSKALPCYWLW
Trigger: CCACAGCCAGTAACACGGAAGTGCTTTGCTGGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp GGCAGGGAAGACGAGTCACCTGACCAAGCTGGTCCATaGCTGGTAGGAGCAAGCCCCTGGTTAGGTCCTAGA +
Preference number: 3 (lower is better)
Translates to: GREDESPDQAGP*LVGASPWLGPR
Trigger: TCTAGGACCTAACCAGGGGCTTGCTCCTACCAGCCATGGACCAGCTTGGTCAGGTGACTCGTCTTCCCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp GCCACACCCACACGGCTTCGGGCTGTTGTCATGGGATaGCACTTTTCCCAGCGATTGGCGATAGGGTCGAAC +
Preference number: 3 (lower is better)
Translates to: ATPTRLRAVVMG*HFSQRLAIGSN
Trigger: GTTCGACCCTATCGCCAATCGCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAAGCCGTGTGGGTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CAA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGTTCCCTTCCTGTTTCTaGGGGACAAGTGGAGAAAGA +
Preference number: 3 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGFPSCF*GTSGER
Trigger: TCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAA...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCTTTTGGCAGCGGCAGTaGAAGGTCTGCCCCACTGCC +
Preference number: 3 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERFWQRQ*KVCPTA
Trigger: GGCAGTGGGGCAGACCTTCAACTGCCGCTGCCAAAA...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTTTTGGCAGCGGCAGTaGAAGGTCTGCCCCACTGCC +
Preference number: 3 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWFWQRQ*KVCPTA
Trigger: GGCAGTGGGGCAGACCTTCAACTGCCGCTGCCAAAA...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCTTCTGTTCTCCCTGCTaGCTGGAGACAGGGGCCAAG +
Preference number: 3 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERFCSPC*LETGAK
Trigger: CTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAA...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTTGTCGGCAGCGCTTGTaGAGCATGCTGGCTGCCGGG +
Preference number: 3 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSCRQRL*SMLAAG
Trigger: CCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACA...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR GCA 72 bp CTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCCTATaGTTGTACCAGATCCCTAGCCCACCACGTCCCATC +
Preference number: 3 (lower is better)
Translates to: LLRGLSPGRKRL*LYQIPSPPRPI
Trigger: GATGGGACGTGGTGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp GCACGACTGTCCCCATGGCACTTCGCTTGCTATTCATaGTCCCCACTCGGGTCCATGTGTCCGTCTCAGGAT +
Preference number: 3 (lower is better)
Translates to: ARLSPWHFACYS*SPLGSMCPSQD
Trigger: ATCCTGAGACGGACACATGGACCCGAGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGGGGACAGTCGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CAA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCCAGACATGTTGTTTCTaGCTGGCCAAAAAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTQTCCF*LAKKGK
Trigger: CTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCTG...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTGCCCGGCTCTTTACATaGCAGGGAACAAGAGTCCTT +
Preference number: 3 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGARLFT*QGTRVL
Trigger: AAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGGCCCGGCTCTTTACATaGCAGGGAACAAGAGTCCTT +
Preference number: 3 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGARLFT*QGTRVL
Trigger: AAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR TCA 72 bp CATCGGAGTCACCACTGTCCACTTGTCCGTCTCAGGTaGGTAGGTCTCCACAGAGTTGAGGGAGGAGTTGCC +
Preference number: 3 (lower is better)
Translates to: HRSHHCPLVRLR*VGLHRVEGGVA
Trigger: GGCAACTCCTCCCTCAACTCTGTGGAGACCTACTCACCTGAGACGGACAAGTGGACAGTGGTGACTCCGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CAA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGCCACTGAGCTTAGGTTaGACTGTCCATCGTAACCTC +
Preference number: 3 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGPLSLG*TVHRNL
Trigger: GAGGTTACGATGGACAGTCAAACCTAAGCTCAGTGG...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR TCA 72 bp ACTTGTCCGTCTCAGGTGAGTAGGTCTCCACAGAGTTaGGGGAGGAGTTGCCGTCATAGCCTCCACACACGT +
Preference number: 3 (lower is better)
Translates to: TCPSQVSRSPQS*GRSCRHSLHTR
Trigger: ACGTGTGTGGAGGCTATGACGGCAACTCCTCCCTCAACTCTGTGGAGACCTACTCACCTGAGACGGACAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CCA 72 bp GAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATaGAAAATAGCGGAATGGCAGGGAAGACGAGTCACC +
Preference number: 3 (lower is better)
Translates to: EKVDGHPGLANG*KIAEWQGRRVT
Trigger: GGTGACTCGTCTTCCCTGCCATTCCGCTATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTTTCCCTTCCTGTTTCTaGGGGACAAGTGGAGAAAGA +
Preference number: 3 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCFPSCF*GTSGER
Trigger: TCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAA...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTTTCCCTTCCTGTTTCTaGGGGACAAGTGGAGAAAGA +
Preference number: 3 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGFPSCF*GTSGER
Trigger: TCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAA...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCAACCCCATGAGCACCTaGCTACAGGTCAGTCAAGAA +
Preference number: 3 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERNPMST*LQVSQE
Trigger: TTCTTGACTGACCTGTAGCAAGGTGCTCATGGGGTT...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp GACCAAGCTGGTCCATGGCTGGTAGGAGCAAGCCCCTaGTTAGGTCCTAGAGGTACAAATGGTCAATGTGCT +
Preference number: 3 (lower is better)
Translates to: DQAGPWLVGASP*LGPRGTNGQCA
Trigger: AGCACATTGACCATTTGTACCTCTAGGACCTAACCAGGGGCTTGCTCCTACCAGCCATGGACCAGCTTGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp TGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATaGATGGAAAATAGCGGAATGGCAGGGAAGACGAGT +
Preference number: 3 (lower is better)
Translates to: WREGGRTPRVGK*MENSGMAGKTS
Trigger: ACTCGTCTTCCCTGCCATTCCGCTATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp ACCTCAGCAGGCAAACTGAGGGGCAGGAAGAAATGCTaGCGCTCCACTGGGAGCCTAGTTAAGATGTATCAG +
Preference number: 3 (lower is better)
Translates to: TSAGKLRGRKKC*RSTGSLVKMYQ
Trigger: CTGATACATCTTAACTAGGCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCCCCTCAGTTTGCCTGCTGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGATCTGGGCAGACATGTaGTTTCTTGCTGGCCAAAAA +
Preference number: 3 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRIWADM*FLAGQK
Trigger: TTTTTGGCCAGCAAGAAACAACATGTCTGCCCAGAT...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGTTAGGAAAGCAGATTTaGGCAGCGGCAGTTGAAGGT +
Preference number: 3 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQLGKQI*AAAVEG
Trigger: ACCTTCAACTGCCGCTGCCAAAATCTGCTTTCCTAA...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGCTGAATCTATGGCAATaGCACACACTGGGAAACCTG +
Preference number: 3 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRLNLWQ*HTLGNL
Trigger: CAGGTTTCCCAGTGTGTGCAATTGCCATAGATTCAG...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp TCTACCTCAGCAGGCAAACTGAGGGGCAGGAAGAAATaGTGGCGCTCCACTGGGAGCCTAGTTAAGATGTAT +
Preference number: 3 (lower is better)
Translates to: STSAGKLRGRKK*WRSTGSLVKMY
Trigger: ATACATCTTAACTAGGCTCCCAGTGGAGCGCCAGCATTTCTTCCTGCCCCTCAGTTTGCCTGCTGAGGTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAAGGAAGCGCCTATGCTaGTACCAGATCCCTAGCCCA +
Preference number: 3 (lower is better)
Translates to: ARLFTLQGTRVLPSESMARKRLC*YQIPSP
Trigger: TGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCT...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAATTCTGTTCTCCCTGCTaGCTGGAGACAGGGGCCAAG +
Preference number: 3 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKFCSPC*LETGAK
Trigger: CTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAA...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGAACCCCATGAGCACCTaGCTACAGGTCAGTCAAGAA +
Preference number: 3 (lower is better)
Translates to: GRRSIESLHEVICQDQGKNPMST*LQVSQE
Trigger: TTCTTGACTGACCTGTAGCAAGGTGCTCATGGGGTT...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGATCTGGGCAGACATGTaGTTTCTTGCTGGCCAAAAA +
Preference number: 3 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWIWADM*FLAGQK
Trigger: TTTTTGGCCAGCAAGAAACAACATGTCTGCCCAGAT...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTGCCCGGCTCTTTACATaGCAGGGAACAAGAGTCCTT +
Preference number: 3 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSARLFT*QGTRVL
Trigger: AAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCACCCATGGCACTTCGCTaGCTATTCATGCTCCCCACT +
Preference number: 3 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAPMALR*LFMLPT
Trigger: AGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGGG...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR-3UTR CAA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAAGGTGTTCGCTGGGCTaGGATGGAGCCTGTGTGCCT +
Preference number: 3 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSRCSLG*DGACVP
Trigger: AGGCACACAGGCTCCATCCAAGCCCAGCGAACACCT...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTGAGTGGACACCACTGTaGTCATGGTTGATGGTTCTC +
Preference number: 3 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLEWTPL*SWLMVL
Trigger: GAGAACCATCAACCATGACAACAGTGGTGTCCACTC...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTTTAGGAAAGCAGATTTaGGCAGCGGCAGTTGAAGGT +
Preference number: 3 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLLGKQI*AAAVEG
Trigger: ACCTTCAACTGCCGCTGCCAAAATCTGCTTTCCTAA...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp TGGGTGAGTGCGAATCTGGGCAGACATGTTGTTTCTTaGTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTG +
Preference number: 3 (lower is better)
Translates to: WVSANLGRHVVS*WPKRERMYVGV
Trigger: CACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCTGCCCAGATTCGCACTCACCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp GCGTGTGTGCATGGGTACTATGAGACACCACTGGTCTaGCACAGAGCTGTACATCTCAGCAATACTGAGGAA +
Preference number: 3 (lower is better)
Translates to: ACVHGYYETPLV*HRAVHLSNTEE
Trigger: TTCCTCAGTATTGCTGAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGTACCCATGCACACACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CCA 72 bp CCACGGACTGGTTCTCAGCACCTTCACAGTCGAGGCTaGGCAGTACATTCACAGAAGGACTTAATAAGAGGA +
Preference number: 3 (lower is better)
Translates to: PRTGSQHLHSRG*AVHSQKDLIRG
Trigger: TCCTCTTATTAAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCAGTCCGTGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTAGGAAGCGCCTATGCTaGTACCAGATCCCTAGCCCA +
Preference number: 3 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCRKRLC*YQIPSP
Trigger: TGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCT...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTTTCTGTTCTCCCTGCTaGCTGGAGACAGGGGCCAAG +
Preference number: 3 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTFCSPC*LETGAK
Trigger: CTTGGCCCCTGTCTCCAGCAAGCAGGGAGAACAGAA...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGCTCTTCAACATTTTCTaGTTTCCATTTCCTCCAGTT +
Preference number: 3 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGLFNIF*FPFPPV
Trigger: AACTGGAGGAAATGGAAACAAGAAAATGTTGAAGAG...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTCTGAATCTATGGCAATaGCACACACTGGGAAACCTG +
Preference number: 3 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLLNLWQ*HTLGNL
Trigger: CAGGTTTCCCAGTGTGTGCAATTGCCATAGATTCAG...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCGAGTGGACACCACTGTaGTCATGGTTGATGGTTCTC +
Preference number: 3 (lower is better)
Translates to: RQISHRPQTGEYKNVSVREWTPL*SWLMVL
Trigger: GAGAACCATCAACCATGACAACAGTGGTGTCCACTC...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR TCA 72 bp GTGATGAGGGAGAGTTATTCAAGGATGGTGGATGGGTaGGTGCGAATCTGGGCAGACATGTTGTTTCTTGCT +
Preference number: 3 (lower is better)
Translates to: VMRESYSRMVDG*VRIWADMLFLA
Trigger: AGCAAGAAACAACATGTCTGCCCAGATTCGCACTCACCCATCCACCATCCTTGAATAACTCTCCCTCATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR TCA 72 bp TCTTTCCAGTGTCCTTGGGTGATGCCTGTTCTCACATaGTCCTACAGTTCTGACACTGAGACAGATCAGCCA +
Preference number: 3 (lower is better)
Translates to: SFQCPWVMPVLT*SYSSDTETDQP
Trigger: TGGCTGATCTGTCTCAGTGTCAGAACTGTAGGATCATGTGAGAACAGGCATCACCCAAGGACACTGGAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR GCA 72 bp TTCAAGTGCTTAGAGCAGAGGCCCGGCTCTTTACATTaGAGGGAACAAGAGTCCTTCCTTCTGAATCTATGG +
Preference number: 3 (lower is better)
Translates to: FKCLEQRPGSLH*REQESFLLNLW
Trigger: CCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGCCTCTGCTCTAAGCACTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp AGGTCAGTCAAGAATGTCCTGATTTCAGACACACTGTaGGATTCAGAGGAAACCCCGACTGCTTTAGGAGGA +
Preference number: 3 (lower is better)
Translates to: RSVKNVLISDTL*DSEETPTALGG
Trigger: TCCTCCTAAAGCAGTCGGGGTTTCCTCTGAATCCCACAGTGTGTCTGAAATCAGGACATTCTTGACTGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CCA 72 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATaGCAATTGCACACACTGGGAAACCTGATGGTCTGG +
Preference number: 3 (lower is better)
Translates to: HCREQESFLLNL*QLHTLGNLMVW
Trigger: CCAGACCATCAGGTTTCCCAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGGAGTGGACACCACTGTaGTCATGGTTGATGGTTCTC +
Preference number: 3 (lower is better)
Translates to: HCREQESFLLNLWQLHTLEWTPL*SWLMVL
Trigger: GAGAACCATCAACCATGACAACAGTGGTGTCCACTC...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCACAGACATGTTGTTTCTaGCTGGCCAAAAAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAQTCCF*LAKKGK
Trigger: CTTTCCCTTTTTGGCCAGCAAGAAACAACATGTCTG...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTTCCCTTCCTGTTTCTaGGGGACAAGTGGAGAAAGA +
Preference number: 3 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCFPSCF*GTSGER
Trigger: TCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCAACCCCATGAGCACCTaGCTACAGGTCAGTCAAGAA +
Preference number: 3 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSNPMST*LQVSQE
Trigger: TTCTTGACTGACCTGTAGCAAGGTGCTCATGGGGTT...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTATCTGGGCAGACATGTaGTTTCTTGCTGGCCAAAAA +
Preference number: 3 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCIWADM*FLAGQK
Trigger: TTTTTGGCCAGCAAGAAACAACATGTCTGCCCAGAT...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAATCTGGGCAGACATGTaGTTTCTTGCTGGCCAAAAA +
Preference number: 3 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSIWADM*FLAGQK
Trigger: TTTTTGGCCAGCAAGAAACAACATGTCTGCCCAGAT...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTAGGAAGCGCCTATGCTaGTACCAGATCCCTAGCCCA +
Preference number: 3 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFRKRLC*YQIPSP
Trigger: TGGGCTAGGGATCTGGTACAAGCATAGGCGCTTCCT...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR-3UTR CAA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCCTCTTCAACATTTTCTaGTTTCCATTTCCTCCAGTT +
Preference number: 3 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSLFNIF*FPFPPV
Trigger: AACTGGAGGAAATGGAAACAAGAAAATGTTGAAGAG...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp CTTCCCAGGGAGGCGGCTCCGTGTCGGCAGCGCTTGTaGAGCATGCTGGCTGCCGGGTGCCAGGTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: LPREAAPCRQRL*SMLAAGCQVAV
Trigger: CACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CAA 72 bp TTGCTTCCCAGGGAGGCGGCTCCGTGTCGGCAGCGCTaGTTGAGCATGCTGGCTGCCGGGTGCCAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: LLPREAAPCRQR*LSMLAAGCQVA
Trigger: GGCCACCTGGCACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAAGCAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR CCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAAGAGGCGCCCACAGCTaGCCACGAGGGAGACCCGGC +
Preference number: 4 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPRGAHS*PRGRPG
Trigger: GCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCT...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCGTCGGCAGCGCTTGTTaGGCATGCTGGCTGCCGGGT +
Preference number: 4 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTVGSAC*ACWLPG
Trigger: ACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGAC...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTCTGAAAGCTGGCAGGTaGGGCCGGCGCTCTGGCATC +
Preference number: 4 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARLKAGR*GRRSGI
Trigger: GATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAG...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCACTGAAAGCTGGCAGGTaGGGCCGGCGCTCTGGCATC +
Preference number: 4 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPLKAGR*GRRSGI
Trigger: GATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAG...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGAGGCGCCCACAGCTaGCCACGAGGGAGACCCGGC +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRRGAHS*PRGRPG
Trigger: GCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCT...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGAATCGGGGCCGAGTCCTaGAAGCTGGCAGGTGGGGCC +
Preference number: 4 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGIGAES*KLAGGA
Trigger: GGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGAT...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGATCGGGGCCGAGTCCTaGAAGCTGGCAGGTGGGGCC +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRIGAES*KLAGGA
Trigger: GGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGAT...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCCCCCACAGCGTAGATaGGCCCAGCGATGGACGTGC +
Preference number: 4 (lower is better)
Translates to: VFWSTTASSERTLPWKEAPPQRR*AQRWTC
Trigger: GCACGTCCATCGCTGGGCTCATCTACGCTGTGGGGG...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTGCCATCGTGGCCTCCTaGCACATATATCCTGCCCTC +
Preference number: 4 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARAIVAS*HIYPAL
Trigger: GAGGGCAGGATATATGTGTCAGGAGGCCACGATGGC...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAGCCATCGTGGCCTCCTaGCACATATATCCTGCCCTC +
Preference number: 4 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPAIVAS*HIYPAL
Trigger: GAGGGCAGGATATATGTGTCAGGAGGCCACGATGGC...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CTTCGGGCTGTTGTCATGGGATGGCACTTTTCCCAGCGATTGGCGATAGGGTCGCAGCTCGGGCAGGCATaGTCCCCTCTGCTCCCGGTC +
Preference number: 4 (lower is better)
Translates to: LRAVVMGWHFSQRLAIGSQLGQA*SPLLPV
Trigger: GACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTG...CGACCCTATCGCCAATCGCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR TCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGCCCCCACAGCGTAGATaGGCCCAGCGATGGACGTGC +
Preference number: 4 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWPPQRR*AQRWTC
Trigger: GCACGTCCATCGCTGGGCTCATCTACGCTGTGGGGG...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGGTCGGCAGCGCTTGTTaGGCATGCTGGCTGCCGGGT +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRVGSAC*ACWLPG
Trigger: ACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGAC...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGTGTGCATGGGTACTATaGGACACCACTGGTCTGCCA +
Preference number: 4 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGCAWVL*DTTGLP
Trigger: TGGCAGACCAGTGGTGTCTCATAGTACCCATGCACA...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCATTGATGCTCTGCAGCTaGAGGAAGCTTGCCCCCATC +
Preference number: 4 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPLMLCS*RKLAPI
Trigger: GATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAA...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GGCTGCAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCTTGATGCTCTGCAGCTaGAGGAAGCTTGCCCCCATC +
Preference number: 4 (lower is better)
Translates to: GCRRREGSAGRPPAHECSLMLCS*RKLAPI
Trigger: GATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAA...GGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CCAGTGCTGCAGCAGGTGTTCGCTGGGCTTGGATGGAGCCTGTGTGCCTGGACCTTGATGCTCTGCAGCTaGAGGAAGCTTGCCCCCATC +
Preference number: 4 (lower is better)
Translates to: PVLQQVFAGLGWSLCAWTLMLCS*RKLAPI
Trigger: GATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAA...GGTCCAGGCACACAGGCTCCATCCAAGCCCAGCGAACACCTGCTGCAGCACTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTGAGGCAGGCGGATATTaGACAGCAGCTCGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCEAGGY*TAARAG
Trigger: GCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTC...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp GGGAGATGGCGTATCATCTCTAGGGATGCAGTCTGCTaGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: GRWRIISRDAVC*HREDPGGPPGS
Trigger: GCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCTAGAGATGATACGCCATCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GGCTGCAGGAGAAGGGAAGGCTCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCTGTGCATGGGTACTATaGGACACCACTGGTCTGCCA +
Preference number: 4 (lower is better)
Translates to: GCRRREGSAGRPPAHECSCAWVL*DTTGLP
Trigger: TGGCAGACCAGTGGTGTCTCATAGTACCCATGCACA...GGAGCACTCATGGGCAGGAGGTCTTCCAGCCGAGCCTTCCCTTCTCCTGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTTCGCATAGCTTGCCCTaGCGCCGGATCTCCTCCATG +
Preference number: 4 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCSHSLP*RRISSM
Trigger: CATGGAGGAGATCCGGCGGCAGGGCAAGCTATGCGA...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR GCA 90 bp AGCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTCACGTCGCATAGCTTaGCCTGCCGCCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: SKALPCYWLWDPRGTPVLSRRIA*PAAGSP
Trigger: AGGAGATCCGGCGGCAGGGCAAGCTATGCGACGTGA...CAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR GCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCAGCTGCAGGAAGCTTaGCCCCATCAGCAGGGACTG +
Preference number: 4 (lower is better)
Translates to: VFWSTTASSERTLPWKEAQLQEA*PHQQGL
Trigger: CAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTG...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGCAGCTGCAGGAAGCTTaGCCCCATCAGCAGGGACTG +
Preference number: 4 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRQLQEA*PHQQGL
Trigger: CAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTG...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTCCTGACCCAGGCCAATaGAGCTTCAAAAACCTGCTC +
Preference number: 4 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARPDPGQ*SFKNLL
Trigger: GAGCAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGG...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCTGTAGGCCTCCACGGTaGTCAGCCGCAACTGACCAT +
Preference number: 4 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPCRPPR*SAATDH
Trigger: ATGGTCAGTTGCGGCTGAGCACCGTGGAGGCCTACA...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTATGCTGGCTGCCGGGTaGCAGGTGGCCGTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLMLAAG*QVAVWW
Trigger: CCACCACACGGCCACCTGGCACCCGGCAGCCAGCAT...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGCAGCTCGGGCAGGCATaGTCCCCTCTGCTCCCGGTC +
Preference number: 4 (lower is better)
Translates to: GRRSIESLHEVICQDQGKQLGQA*SPLLPV
Trigger: GACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTG...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGAGAGGCAGGCGGATATTaGACAGCAGCTCGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGEAGGY*TAARAG
Trigger: GCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTC...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGGAGGCAGGCGGATATTaGACAGCAGCTCGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWEAGGY*TAARAG
Trigger: GCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTC...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCGAGGCAGGCGGATATTaGACAGCAGCTCGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: LLAKKGKDVRGSGDLWEREAGGY*TAARAG
Trigger: GCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTC...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTGCACGACTGTCCCCATaGCACTTCGCTTGCTATTCA +
Preference number: 4 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARARLSP*HFACYS
Trigger: TGAATAGCAAGCGAAGTGCCATGGGGACAGTCGTGC...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TCGGCTGGAAGACCTCCTGCCCATGAGTGCTCCCTGTGGCAAGGGGGAGCTGGGACTATGAGACACCACTaGTCTGCCACAGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: SAGRPPAHECSLWQGGAGTMRHH*SATELY
Trigger: GTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGT...CCCAGCTCCCCCTTGCCACAGGGAGCACTCATGGGCAGGAGGTCTTCCAGCCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTAGAGGCGCCCACAGCTaGCCACGAGGGAGACCCGGC +
Preference number: 4 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSRGAHS*PRGRPG
Trigger: GCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCT...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp CGTTCACCACAGCCACACCCACACGGCTTCGGGCTGTaGTCATGGGATGGCACTTTTCCCAGCGATTGGCGA +
Preference number: 4 (lower is better)
Translates to: RSPQPHPHGFGL*SWDGTFPSDWR
Trigger: TCGCCAATCGCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAAGCCGTGTGGGTGTGGCTGTGGTGAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR TCA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCAGGTCCCTGCATTTGTaGCAGCACCGTACCAGGTCA +
Preference number: 4 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPRSLHL*QHRTRS
Trigger: TGACCTGGTACGGTGCTGTCACAAATGCAGGGACCT...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGTCGCATAGCTTGCCCTaGCGCCGGATCTCCTCCATG +
Preference number: 4 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQSHSLP*RRISSM
Trigger: CATGGAGGAGATCCGGCGGCAGGGCAAGCTATGCGA...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR GCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGTCACGTCGCATAGCTTaGCCTGCCGCCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRSRRIA*PAAGSP
Trigger: AGGAGATCCGGCGGCAGGGCAAGCTATGCGACGTGA...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR TCA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGCGATCCGGTGAGCACTaGACTTGTGGTCCCCAATCT +
Preference number: 4 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRRSGEH*TCGPQS
Trigger: AGATTGGGGACCACAAGTTCAGTGCTCACCGGATCG...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR TCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTCCCCCACAGCGTAGATaGGCCCAGCGATGGACGTGC +
Preference number: 4 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSPPQRR*AQRWTC
Trigger: GCACGTCCATCGCTGGGCTCATCTACGCTGTGGGGG...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAACATCTCAGCAATACTaGGGAAGCCAGAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPTSQQY*GSQSHH
Trigger: ATGATGGCTCTGGCTTCCTCAGTATTGCTGAGATGT...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CTCCTGACACATATATCCTGCCCTCAAAGACTGTCACCCCAGCAGCACTCCGGTTCGCATAGCTTGCCCTaGCGCCGGATCTCCTCCATG +
Preference number: 4 (lower is better)
Translates to: LLTHISCPQRLSPQQHSGSHSLP*RRISSM
Trigger: CATGGAGGAGATCCGGCGGCAGGGCAAGCTATGCGA...ACCGGAGTGCTGCTGGGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR GCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCTGTAGGCCTCCACGGTaGTCAGCCGCAACTGACCAT +
Preference number: 4 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERCRPPR*SAATDH
Trigger: ATGGTCAGTTGCGGCTGAGCACCGTGGAGGCCTACA...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGTGTAGGCCTCCACGGTaGTCAGCCGCAACTGACCAT +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRCRPPR*SAATDH
Trigger: ATGGTCAGTTGCGGCTGAGCACCGTGGAGGCCTACA...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGCACAGACAAACATCTTaGTTCCCAGGGAGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGHRQTS*FPGRRL
Trigger: GAGCCGCCTCCCTGGGAAGCAAGATGTTTGTCTGTG...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTTTCGTAAACATAGCATaGAAGTACGGGATGGAGGCC +
Preference number: 4 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARFVNIA*KYGMEA
Trigger: GGCCTCCATCCCGTACTTCCATGCTATGTTTACGAA...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR CCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCACAGCTCGGGCAGGCATaGTCCCCTCTGCTCCCGGTC +
Preference number: 4 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAQLGQA*SPLLPV
Trigger: GACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTG...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp TGCCCTCAAAGACTGTCACCCCAGCAGCACTCCGGTTaGAGCTCATCGGAGTCACCACTGTCCACTTGTCCG +
Preference number: 4 (lower is better)
Translates to: CPQRLSPQQHSG*SSSESPLSTCP
Trigger: CGGACAAGTGGACAGTGGTGACTCCGATGAGCTCAAACCGGAGTGCTGCTGGGGTGACAGTCTTTGAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR TCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCCGATCCGGTGAGCACTaGACTTGTGGTCCCCAATCT +
Preference number: 4 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERRSGEH*TCGPQS
Trigger: AGATTGGGGACCACAAGTTCAGTGCTCACCGGATCG...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR TCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTCAAAGTGCTGGTGGATaGAGCTGTTGGCTGCATCGT +
Preference number: 4 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCQSAGG*SCWLHR
Trigger: ACGATGCAGCCAACAGCTTCATCCACCAGCACTTTG...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTT +
Preference number: 4 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLAPGHT*PRPMQL
Trigger: AAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGC...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGGTGCTCAGCCGCAACTaGCCATCATATCCCCCGATA +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRVLSRN*PSYPPI
Trigger: TATCGGGGGATATGATGGTCAGTTGCGGCTGAGCAC...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTCTTGTCCGTCTCAGGTaGGTAGGTCTCCACAGAGTT +
Preference number: 4 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCLVRLR*VGLHRV
Trigger: AACTCTGTGGAGACCTACTCACCTGAGACGGACAAG...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGCAGCTGCAGGAAGCTTaGCCCCATCAGCAGGGACTG +
Preference number: 4 (lower is better)
Translates to: GRRSIESLHEVICQDQGKQLQEA*PHQQGL
Trigger: CAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTG...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCCATGGCACTTCGCTTaGTATTCATGCTCCCCACTC +
Preference number: 4 (lower is better)
Translates to: VFWSTTASSERTLPWKEAPWHFA*YSCSPL
Trigger: GAGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGG...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAAATGCTGGCTGCCGGGTaGCAGGTGGCCGTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKMLAAG*QVAVWW
Trigger: CCACCACACGGCCACCTGGCACCCGGCAGCCAGCAT...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAGTTGAGCATGCTGGCTaGCGGGTGCCAGGTGGCCGT +
Preference number: 4 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAVEHAG*RVPGGR
Trigger: ACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAAC...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGCACAGACAAACATCTTaGTTCCCAGGGAGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRHRQTS*FPGRRL
Trigger: GAGCCGCCTCCCTGGGAAGCAAGATGTTTGTCTGTG...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAACCGAGTCCTGAAAGCTaGCAGGTGGGGCCGGCGCTC +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKPSPES*QVGPAL
Trigger: GAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGG...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp AGCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTTCGGGCTGTTGTCATaGGATGGCACTTTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: SKALPCYWLWDPRGTPVLFGLLS*DGTFPS
Trigger: GCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAA...CAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTGCACGACTGTCCCCATaGCACTTCGCTTGCTATTCA +
Preference number: 4 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCARLSP*HFACYS
Trigger: TGAATAGCAAGCGAAGTGCCATGGGGACAGTCGTGC...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGGCACGACTGTCCCCATaGCACTTCGCTTGCTATTCA +
Preference number: 4 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGARLSP*HFACYS
Trigger: TGAATAGCAAGCGAAGTGCCATGGGGACAGTCGTGC...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGCAAAGTGCTGGTGGATaGAGCTGTTGGCTGCATCGT +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRQSAGG*SCWLHR
Trigger: ACGATGCAGCCAACAGCTTCATCCACCAGCACTTTG...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTT +
Preference number: 4 (lower is better)
Translates to: SCWREGGRTPRVGKWMENAPGHT*PRPMQL
Trigger: AAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGC...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGACTTGTCCGTCTCAGGTaGGTAGGTCTCCACAGAGTT +
Preference number: 4 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGLVRLR*VGLHRV
Trigger: AACTCTGTGGAGACCTACTCACCTGAGACGGACAAG...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGGCCATCGTGGCCTCCTaGCACATATATCCTGCCCTC +
Preference number: 4 (lower is better)
Translates to: GRRSIESLHEVICQDQGKAIVAS*HIYPAL
Trigger: GAGGGCAGGATATATGTGTCAGGAGGCCACGATGGC...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCTGTGCATGGGTACTATaGGACACCACTGGTCTGCCA +
Preference number: 4 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERCAWVL*DTTGLP
Trigger: TGGCAGACCAGTGGTGTCTCATAGTACCCATGCACA...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGGGATGCAGTCTGCTTGCATCGTGAGGACCCAGGAGGCCCACCTGGGAGCCCAATTACAATCTCATCCTaGTTGCACTCCATCATGTCG +
Preference number: 4 (lower is better)
Translates to: RDAVCLHREDPGGPPGSPITISS*LHSIMS
Trigger: CGACATGATGGAGTGCAAGCAGGATGAGATTGTAAT...TGGGCTCCCAGGTGGGCCTCCTGGGTCCTCACGATGCAAGCAGACTGCATCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGTTCGCTTGCTATTCATaGTCCCCACTCGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRFACYS*SPLGSM
Trigger: CATGGACCCGAGTGGGGAGCATGAATAGCAAGCGAA...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCGTTGAGCATGCTGGCTaGCGGGTGCCAGGTGGCCGT +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRVEHAG*RVPGGR
Trigger: ACGGCCACCTGGCACCCGGCAGCCAGCATGCTCAAC...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGGAGACACCACTGGTCTaGCACAGAGCTGTACATCTC +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRETPLV*HRAVHL
Trigger: GAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTC...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGATCGTCTCGGCAAACTaGCGCACACCCAGGCAATTT +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRIVSAN*RTPRQF
Trigger: AAATTGCCTGGGTGTGCGCCAGTTTGCCGAGACGAT...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGATCGTCTCGGCAAACTaGCGCACACCCAGGCAATTT +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRIVSAN*RTPRQF
Trigger: AAATTGCCTGGGTGTGCGCCAGTTTGCCGAGACGAT...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGCAGCTCGGGCAGGCATaGTCCCCTCTGCTCCCGGTC +
Preference number: 4 (lower is better)
Translates to: HCREQESFLLNLWQLHTLQLGQA*SPLLPV
Trigger: GACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTG...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTCCGAGTCCTGAAAGCTaGCAGGTGGGGCCGGCGCTC +
Preference number: 4 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCPSPES*QVGPAL
Trigger: GAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGG...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGACTATGAGACACCACTaGTCTGCCACAGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: VFWSTTASSERTLPWKEATMRHH*SATELY
Trigger: GTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGT...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp CGGGCTGTTGTCATGGGATGGCACTTTTCCCAGCGATaGGCGATAGGGTCGAACACTTCCACCACATTCAGG +
Preference number: 4 (lower is better)
Translates to: RAVVMGWHFSQR*AIGSNTSTTFR
Trigger: CCTGAATGTGGTGGAAGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTGCCATCCCATGACAACAGCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR TCA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCAAAAACCTGCTCCTCTaGCTTCACATTCAGCTCATC +
Preference number: 4 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPKNLLL*LHIQLI
Trigger: GATGAGCTGAATGTGAAGTCAGAGGAGCAGGTTTTT...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGAGGTCCCTGCATTTGTaGCAGCACCGTACCAGGTCA +
Preference number: 4 (lower is better)
Translates to: GRRSIESLHEVICQDQGKRSLHL*QHRTRS
Trigger: TGACCTGGTACGGTGCTGTCACAAATGCAGGGACCT...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTAGGTCTCCACAGAGTTaGGGGAGGAGTTGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLRSPQS*GRSCRH
Trigger: ATGACGGCAACTCCTCCCTCAACTCTGTGGAGACCT...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGGTCGGCAGCGCTTGTTaGGCATGCTGGCTGCCGGGT +
Preference number: 4 (lower is better)
Translates to: HCREQESFLLNLWQLHTLVGSAC*ACWLPG
Trigger: ACCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGAC...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGCTTGGGTCCATTCCCTaGATTACAATCTCATCCTGC +
Preference number: 4 (lower is better)
Translates to: SKALPCYWLWDPRGTPVLLGSIP*ITISSC
Trigger: GCAGGATGAGATTGTAATGCAGGGAATGGACCCAAG...CAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GTCTTCTGGTCCACCACTGCCTCTTCTGAGAGGACTCTCCCCTGGAAGGAAGCGCTTGGGTCCATTCCCTaGATTACAATCTCATCCTGC +
Preference number: 4 (lower is better)
Translates to: VFWSTTASSERTLPWKEALGSIP*ITISSC
Trigger: GCAGGATGAGATTGTAATGCAGGGAATGGACCCAAG...CGCTTCCTTCCAGGGGAGAGTCCTCTCAGAAGAGGCAGTGGTGGACCAGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGGATGAAGCTGTTGGCTaGATCGTACAACACAGCACA +
Preference number: 4 (lower is better)
Translates to: SKALPCYWLWDPRGTPVLDEAVG*IVQHST
Trigger: TGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATC...CAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGCAGATGATAGTCCTTTaGTTCATCGACCAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGQMIVL*FIDQVP
Trigger: AGGGACCTGGTCGATGAAGCAAAGGACTATCATCTG...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TGCCGTCATAGCCTCCACACACGTAGATCTGTCCATCCAGCACGACTGTCCCCAGACTGCACATTCTGCTaGTCGATAGCAAGGTTGCCA +
Preference number: 4 (lower is better)
Translates to: CRHSLHTRRSVHPARLSPDCTFC*SIARLP
Trigger: TGGCAACCTTGCTATCGACCAGCAGAATGTGCAGTC...TGGGGACAGTCGTGCTGGATGGACAGATCTACGTGTGTGGAGGCTATGACGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
3UTR CAA 72 bp CATCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTaGGCAAATGGATGGAAAATAGCGGAATGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: HLAGEKVDGHPG*ANGWKIAEWQG
Trigger: TCCCTGCCATTCCGCTATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp CTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTaGGCAGCGGCAGTTGAAGGTCTGCCCCACTGCCCA +
Preference number: 4 (lower is better)
Translates to: LVATGRILGKQI*AAAVEGLPHCP
Trigger: TGGGCAGTGGGGCAGACCTTCAACTGCCGCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp CCGTCTCTGGGTCGTACATCTCCACTGAGCTTAGGTTaGACTGTCCATCGTAACCTCCCACTGCATAGAGGC +
Preference number: 4 (lower is better)
Translates to: PSLGRTSPLSLG*TVHRNLPLHRG
Trigger: GCCTCTATGCAGTGGGAGGTTACGATGGACAGTCAAACCTAAGCTCAGTGGAGATGTACGACCCAGAGACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR TCA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTAAAAACCTGCTCCTCTaGCTTCACATTCAGCTCATC +
Preference number: 4 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGKNLLL*LHIQLI
Trigger: GATGAGCTGAATGTGAAGTCAGAGGAGCAGGTTTTT...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAAGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTT +
Preference number: 4 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKAPGHT*PRPMQL
Trigger: AAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGC...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCATCGGGGCCGAGTCCTaGAAGCTGGCAGGTGGGGCC +
Preference number: 4 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSIGAES*KLAGGA
Trigger: GGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGAT...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAACAGCTGCAGGAAGCTTaGCCCCATCAGCAGGGACTG +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKQLQEA*PHQQGL
Trigger: CAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTG...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGGACACCTCTACAAAGTaGTGGTGGATGAAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWDTSTK*WWMKLL
Trigger: CAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTC...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGGCAGCTTCAAAAACCTaGTCCTCTGACTTCACATTC +
Preference number: 4 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGAASKT*SSDFTF
Trigger: GAATGTGAAGTCAGAGGAGCAGGTTTTTGAAGCTGC...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGCAGATGATAGTCCTTTaGTTCATCGACCAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRQMIVL*FIDQVP
Trigger: AGGGACCTGGTCGATGAAGCAAAGGACTATCATCTG...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGGCAGATGATAGTCCTTTaGTTCATCGACCAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: NRLLGRSRQAAEGKKPIRQMIVL*FIDQVP
Trigger: AGGGACCTGGTCGATGAAGCAAAGGACTATCATCTG...CCTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCCTGACACATATATCCTaGCCTCAAAGACTGTCACCC +
Preference number: 4 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERLTHIS*PQRLSP
Trigger: GGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAG...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCACTGAAAGCTGGCAGGTaGGGCCGGCGCTCTGGCATC +
Preference number: 4 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSLKAGR*GRRSGI
Trigger: GATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAG...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGAAAAACCTGCTCCTCTaGCTTCACATTCAGCTCATC +
Preference number: 4 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWKNLLL*LHIQLI
Trigger: GATGAGCTGAATGTGAAGTCAGAGGAGCAGGTTTTT...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTT +
Preference number: 4 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCAPGHT*PRPMQL
Trigger: AAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGC...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTCCATGGCACTTCGCTTaGTATTCATGCTCCCCACTC +
Preference number: 4 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLPWHFA*YSCSPL
Trigger: GAGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGG...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATGAGACACCACTGGTCTaGCACAGAGCTGTACATCTC +
Preference number: 4 (lower is better)
Translates to: SCWREGGRTPRVGKWMENETPLV*HRAVHL
Trigger: GAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTC...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTGAGACACCACTGGTCTaGCACAGAGCTGTACATCTC +
Preference number: 4 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLETPLV*HRAVHL
Trigger: GAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTC...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CTCCTGACACATATATCCTGCCCTCAAAGACTGTCACCCCAGCAGCACTCCGGTTTCGTAAACATAGCATaGAAGTACGGGATGGAGGCC +
Preference number: 4 (lower is better)
Translates to: LLTHISCPQRLSPQQHSGFVNIA*KYGMEA
Trigger: GGCCTCCATCCCGTACTTCCATGCTATGTTTACGAA...ACCGGAGTGCTGCTGGGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR CCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTATCGTCTCGGCAAACTaGCGCACACCCAGGCAATTT +
Preference number: 4 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSIVSAN*RTPRQF
Trigger: AAATTGCCTGGGTGTGCGCCAGTTTGCCGAGACGAT...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCGTGGGGCCGGCGCTCTaGCATCAGATGATAGTCCTT +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRVGPAL*HQMIVL
Trigger: AAGGACTATCATCTGATGCCAGAGCGCCGGCCCCAC...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAAGTGGGGCCGGCGCTCTaGCATCAGATGATAGTCCTT +
Preference number: 4 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKVGPAL*HQMIVL
Trigger: AAGGACTATCATCTGATGCCAGAGCGCCGGCCCCAC...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAAGTGGGGCCGGCGCTCTaGCATCAGATGATAGTCCTT +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKVGPAL*HQMIVL
Trigger: AAGGACTATCATCTGATGCCAGAGCGCCGGCCCCAC...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCAGGTCCCTGCATTTGTaGCAGCACCGTACCAGGTCA +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRRSLHL*QHRTRS
Trigger: TGACCTGGTACGGTGCTGTCACAAATGCAGGGACCT...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCAGGTCTCCACAGAGTTaGGGGAGGAGTTGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRRSPQS*GRSCRH
Trigger: ATGACGGCAACTCCTCCCTCAACTCTGTGGAGACCT...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGATTACAATCTCATCCTaGTTGCACTCCATCATGTCG +
Preference number: 4 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQITISS*LHSIMS
Trigger: CGACATGATGGAGTGCAAGCAGGATGAGATTGTAAT...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCATTCGCTTGCTATTCATaGTCCCCACTCGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAFACYS*SPLGSM
Trigger: CATGGACCCGAGTGGGGAGCATGAATAGCAAGCGAA...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCCACAGACAAACATCTTaGTTCCCAGGGAGGCGGCTC +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRHRQTS*FPGRRL
Trigger: GAGCCGCCTCCCTGGGAAGCAAGATGTTTGTCTGTG...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGCGATCCGGTGAGCACTaGACTTGTGGTCCCCAATCT +
Preference number: 4 (lower is better)
Translates to: HCREQESFLLNLWQLHTLRSGEH*TCGPQS
Trigger: AGATTGGGGACCACAAGTTCAGTGCTCACCGGATCG...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR TCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATACATCTCAGCAATACTaGGGAAGCCAGAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: SCWREGGRTPRVGKWMENTSQQY*GSQSHH
Trigger: ATGATGGCTCTGGCTTCCTCAGTATTGCTGAGATGT...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp GAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCAGCTCTCTTCTACATCTCAGCAATACTaGGGAAGCCAGAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: EGQDSYLVPSEAGLQLSSTSQQY*GSQSHH
Trigger: ATGATGGCTCTGGCTTCCTCAGTATTGCTGAGATGT...AGAAGAGAGCTGAAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAACCTGACCCAGGCCAATaGAGCTTCAAAAACCTGCTC +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKPDPGQ*SFKNLL
Trigger: GAGCAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGG...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATTTCGTAAACATAGCATaGAAGTACGGGATGGAGGCC +
Preference number: 4 (lower is better)
Translates to: SCWREGGRTPRVGKWMENFVNIA*KYGMEA
Trigger: GGCCTCCATCCCGTACTTCCATGCTATGTTTACGAA...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
3UTR CAA 72 bp AGTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTaGGGGACAAGTGGAGAAAGACCTCACTGGATTCCC +
Preference number: 4 (lower is better)
Translates to: SFSRASPFPSCF*GTSGERPHWIP
Trigger: GGGAATCCAGTGAGGTCTTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTAGGTCCCTGCATTTGTaGCAGCACCGTACCAGGTCA +
Preference number: 4 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTRSLHL*QHRTRS
Trigger: TGACCTGGTACGGTGCTGTCACAAATGCAGGGACCT...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAGTGCTCAGCCGCAACTaGCCATCATATCCCCCGATA +
Preference number: 4 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSVLSRN*PSYPPI
Trigger: TATCGGGGGATATGATGGTCAGTTGCGGCTGAGCAC...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTGCAGCTTCAAAAACCTaGTCCTCTGACTTCACATTC +
Preference number: 4 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLAASKT*SSDFTF
Trigger: GAATGTGAAGTCAGAGGAGCAGGTTTTTGAAGCTGC...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTTTCGCTTGCTATTCATaGTCCCCACTCGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCFACYS*SPLGSM
Trigger: CATGGACCCGAGTGGGGAGCATGAATAGCAAGCGAA...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCACTGACACATATATCCTaGCCTCAAAGACTGTCACCC +
Preference number: 4 (lower is better)
Translates to: ARLFTLQGTRVLPSESMALTHIS*PQRLSP
Trigger: GGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAG...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAAGCTGTTGTCATGGGATaGCACTTTTCCCAGCGATTG +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKAVVMG*HFSQRL
Trigger: CAATCGCTGGGAAAAGTGCCATCCCATGACAACAGC...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp TGTAAGCCTTTATACCATGACGCCAGCGTTCGTAGCTaGAATGTAAAGGCCCATCTTGCTGGAGAGAAGGTG +
Preference number: 4 (lower is better)
Translates to: CKPLYHDASVRS*NVKAHLAGEKV
Trigger: CACCTTCTCTCCAGCAAGATGGGCCTTTACATTCAAGCTACGAACGCTGGCGTCATGGTATAAAGGCTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCAAGGTCTCCACAGAGTTaGGGGAGGAGTTGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPRSPQS*GRSCRH
Trigger: ATGACGGCAACTCCTCCCTCAACTCTGTGGAGACCT...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAACTTGGGTCCATTCCCTaGATTACAATCTCATCCTGC +
Preference number: 4 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKLGSIP*ITISSC
Trigger: GCAGGATGAGATTGTAATGCAGGGAATGGACCCAAG...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAACTTGGGTCCATTCCCTaGATTACAATCTCATCCTGC +
Preference number: 4 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKLGSIP*ITISSC
Trigger: GCAGGATGAGATTGTAATGCAGGGAATGGACCCAAG...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCGATGAAGCTGTTGGCTaGATCGTACAACACAGCACA +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRDEAVG*IVQHST
Trigger: TGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATC...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AGACAGATCAGCCATCGCCCTCAGACAGGGGAGTATAAAAATGTTTCTGTTCGCGACACCTCTACAAAGTaGTGGTGGATGAAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: RQISHRPQTGEYKNVSVRDTSTK*WWMKLL
Trigger: CAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTC...GCGAACAGAAACATTTTTATACTCCCCTGTCTGAGGGCGATGGCTGATCTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAACTGACACATATATCCTaGCCTCAAAGACTGTCACCC +
Preference number: 4 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKLTHIS*PQRLSP
Trigger: GGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAG...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp CATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGGACTGCACATTCTGCTaGTCGATAGCAAGGTTGCCA +
Preference number: 4 (lower is better)
Translates to: HCREQESFLLNLWQLHTLDCTFC*SIARLP
Trigger: TGGCAACCTTGCTATCGACCAGCAGAATGTGCAGTC...CAGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTTTCGGGCTGTTGTCATaGGATGGCACTTTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTFGLLS*DGTFPS
Trigger: GCTGGGAAAAGTGCCATCCCATGACAACAGCCCGAA...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR TCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCCTTGTCCGTCTCAGGTaGGTAGGTCTCCACAGAGTT +
Preference number: 4 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSLVRLR*VGLHRV
Trigger: AACTCTGTGGAGACCTACTCACCTGAGACGGACAAG...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTGACACCTCTACAAAGTaGTGGTGGATGAAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCDTSTK*WWMKLL
Trigger: CAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTC...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAAGCAGCTTCAAAAACCTaGTCCTCTGACTTCACATTC +
Preference number: 4 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKAASKT*SSDFTF
Trigger: GAATGTGAAGTCAGAGGAGCAGGTTTTTGAAGCTGC...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGTGTGTCAGATGATAGTCCTTTaGTTCATCGACCAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: WEWTPLLSWLMVLHVNVCQMIVL*FIDQVP
Trigger: AGGGACCTGGTCGATGAAGCAAAGGACTATCATCTG...ACACACATTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCAACTATGAGACACCACTaGTCTGCCACAGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSTMRHH*SATELY
Trigger: GTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGT...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
3UTR CAA 72 bp TTTCAAGTGCTTAGAGCAGAGGCCCGGCTCTTTACATaGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATG +
Preference number: 4 (lower is better)
Translates to: FQVLRAEARLFT*QGTRVLPSESM
Trigger: CATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGCCTCTGCTCTAAGCACTTGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp GTTTCTCTCGAGCATCTCCATTCCCTTCCTGTTTCTTGGGGACAAGTGGAGAAAATTACAATCTCATCCTaGTTGCACTCCATCATGTCG +
Preference number: 4 (lower is better)
Translates to: VSLEHLHSLPVSWGQVEKITISS*LHSIMS
Trigger: CGACATGATGGAGTGCAAGCAGGATGAGATTGTAAT...TTTCTCCACTTGTCCCCAAGAAACAGGAAGGGAATGGAGATGCTCGAGAGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGATGAAGCTGTTGGCTaGATCGTACAACACAGCACA +
Preference number: 4 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTDEAVG*IVQHST
Trigger: TGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATC...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCGCTGTTGTCATGGGATaGCACTTTTCCCAGCGATTG +
Preference number: 4 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSAVVMG*HFSQRL
Trigger: CAATCGCTGGGAAAAGTGCCATCCCATGACAACAGC...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTTTGATGCTCTGCAGCTaGAGGAAGCTTGCCCCCATC +
Preference number: 4 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFLMLCS*RKLAPI
Trigger: GATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAA...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp TTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTGGCAGCATTACAATCTCATCCTaGTTGCACTCCATCATGTCG +
Preference number: 4 (lower is better)
Translates to: LYPSRRYWKDFRKADFGSITISS*LHSIMS
Trigger: CGACATGATGGAGTGCAAGCAGGATGAGATTGTAAT...GCTGCCAAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR GCA 90 bp AAACAATTATATCCTTCTCGTCGCTACTGGAAGGATTTTAGGAAAGCAGATTTTCCTGACCCAGGCCAATaGAGCTTCAAAAACCTTTCT +
Preference number: 4 (lower is better)
Translates to: KQLYPSRRYWKDFRKADFPDPGQ*SFKNLS
Trigger: AGAAAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGG...AAAATCTGCTTTCCTAAAATCCTTCCAGTAGCGACGAGAAGGATATAATTGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR CAA 90 bp CTTGCTGGAGACAGGGGCCAAGTCCTCTGTGCCCCTGTCGAAGGGAGAGCCCGTTGTCGGCAGCGCTTGTaGAGCATGCTGGCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: LAGDRGQVLCAPVEGRARCRQRL*SMLAAG
Trigger: CCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACA...ACGGGCTCTCCCTTCGACAGGGGCACAGAGGACTTGGCCCCTGTCTCCAGCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS CCA 90 bp CCGGCAAAGAGGCAGGCGGATATTGGACAGCAGCTCGGGCAGGCATaGTCCCCTCTGCTCCCGGTCATACCTGACCCAGGCCAATGCAGC +
Preference number: 5 (lower is better)
Translates to: PAKRQADIGQQLGQA*SPLLPVIPDPGQCS
Trigger: GCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CCA 90 bp GAGCCCAGCGATGGACGTGCAGCATCGGGGCCGAGTCCTGAAAGCTaGCAGGTGGGGCCGGCGCTCTGGCATCAGATGATAGTCCTTTGC +
Preference number: 5 (lower is better)
Translates to: EPSDGRAASGPSPES*QVGPALWHQMIVLC
Trigger: GCAAAGGACTATCATCTGATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGATGCTGCACGTCCATCGCTGGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS-3UTR CAA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCGTCACGTCGCATAGCTaGCCCTGCCGCCGGATCTCC +
Preference number: 5 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPVTSHS*PCRRIS
Trigger: GGAGATCCGGCGGCAGGGCAAGCTATGCGACGTGAC...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR CAA 90 bp GAGCCCGTTCACCACAGCCACACCCACACGGCTTCGGGCTGTTGTCATGGGATGGCAGCTGCAGGAAGCTaGCCCCCATCAGCAGGGACT +
Preference number: 5 (lower is better)
Translates to: EPVHHSHTHTASGCCHGMAAAGS*PPSAGT
Trigger: AGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGC...CATCCCATGACAACAGCCCGAAGCCGTGTGGGTGTGGCTGTGGTGAACGGGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR CAA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCTGTCGGCAGCGCTTGTaGAGCATGCTGGCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPCRQRL*SMLAAG
Trigger: CCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACA...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTCACGTCGCATAGCTaGCCCTGCCGCCGGATCTCC +
Preference number: 5 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRVTSHS*PCRRIS
Trigger: GGAGATCCGGCGGCAGGGCAAGCTATGCGACGTGAC...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR CAA 90 bp GCAAAGCACTTCCGTGTTACTGGCTGTGGGACCCCAGAGGGACTCCTGTCCTGTCCGTGTCGGCAGCGCTaGTTGAGCATGCTGGCTGCC +
Preference number: 5 (lower is better)
Translates to: AKHFRVTGCGTPEGLLSCPCRQR*LSMLAA
Trigger: GGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGG...ACAGGACAGGAGTCCCTCTGGGGTCCCACAGCCAGTAACACGGAAGTGCTTTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS GCA 90 bp GGCAGGCGGATATTGGACAGCAGCTCGGGCAGGCATGGTCCCCTCTaGTCCCGGTCATACCTGACCCAGGCCAATGCAGCTTCAAAAACC +
Preference number: 5 (lower is better)
Translates to: GRRILDSSSGRHGPL*SRSYLTQANAASKT
Trigger: GGTTTTTGAAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CCA 90 bp CTCGATCTGATAAGAACTGGGGCCGGCAAAGAGGCAGGCGGATATTaGACAGCAGCTCGGGCAGGCATGGTCCCCTCTGCTCCCGGTCAT +
Preference number: 5 (lower is better)
Translates to: LDLIRTGAGKEAGGY*TAARAGMVPSAPGH
Trigger: ATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGGCCCCAGTTCTTATCAGATCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS-3UTR CAA 90 bp TTGAAGGTCTGCCCCACTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGAGAGGCAGGCGGATATaGGACAGCAGCTCGGGCAGG +
Preference number: 5 (lower is better)
Translates to: LKVCPTAQCTGKRQSPSGRGRRI*DSSSGR
Trigger: CCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCT...CCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAGTGGGGCAGACCTTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGACCGTGTCGGCAGCGCTaGTTGAGCATGCTGGCTGCC +
Preference number: 5 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGPCRQR*LSMLAA
Trigger: GGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGG...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCAGAGGCAGGCGGATATaGGACAGCAGCTCGGGCAGG +
Preference number: 5 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERRGRRI*DSSSGR
Trigger: CCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCT...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp TCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGAGGAAGAGGCAGGCGGATATaGGACAGCAGCTCGGGCAGG +
Preference number: 5 (lower is better)
Translates to: SPSGSFCAMVRSHPEGGGRGRRI*DSSSGR
Trigger: CCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCT...TCCTCCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS TCA 90 bp ACAGCAGCTCGGGCAGGCATGGTCCCCTCTGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTTCAAAAACCTGCTCCTCTGACTTCA +
Preference number: 5 (lower is better)
Translates to: TAARAGMVPSAPGHT*PRPMQLQKPAPLTS
Trigger: TGAAGTCAGAGGAGCAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS TCA 90 bp ACAGCAGCTCGGGCAGGCATGGTCCCCTCTGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTTCAAAAACCTTTCTCGGAGGAACGT +
Preference number: 5 (lower is better)
Translates to: TAARAGMVPSAPGHT*PRPMQLQKPFSEER
Trigger: ACGTTCCTCCGAGAAAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS GCA 90 bp AGCTGGCAGGTGGGGCCGGCGCTCTGGCATCAGATGATAGTCCTTTaGTTCATCGACCAGGTCCCTGCATTTGTGACAGCACCGTACCAG +
Preference number: 5 (lower is better)
Translates to: SWQVGPALWHQMIVL*FIDQVPAFVTAPYQ
Trigger: CTGGTACGGTGCTGTCACAAATGCAGGGACCTGGTCGATGAAGCAAAGGACTATCATCTGATGCCAGAGCGCCGGCCCCACCTGCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CCA 90 bp CAGCACCGTACCAGGTCATCTTGCTGCACTCGATCTGATAAGAACTaGGGCCGGCAAAGAGGCAGGCGGATATTGGACAGCAGCTCGGGC +
Preference number: 5 (lower is better)
Translates to: QHRTRSSCCTRSDKN*GRQRGRRILDSSSG
Trigger: GCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGGCCCCAGTTCTTATCAGATCGAGTGCAGCAAGATGACCTGGTACGGTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS-3UTR CAA 90 bp TCGCAGCATGCTAGCTGCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGCAGCAAGCATCTTaGATGCTCTGCAGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: SQHASCCSCTTTGSDNTRVQQAS*MLCSCR
Trigger: CCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCAC...CCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGCAGCTAGCATGCTGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp GCTGTAGCTGCACCACCACAGGCAGTGACAACACCAGGGTGTCCCTTCTCTCCCCACTTTTCCCAGCGATaGGCGATAGGGTCGAACACT +
Preference number: 5 (lower is better)
Translates to: AVAAPPQAVTTPGCPFSPHFSQR*AIGSNT
Trigger: AGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTG...GGGAGAGAAGGGACACCCTGGTGTTGTCACTGCCTGTGGTGGTGCAGCTACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp TCTTGCTGGAGAGAAGGTGGACGGACACCCAGGGTTGGCAAATGGATGGAAAATCCGTGTCGGCAGCGCTaGTTGAGCATGCTGGCTGCC +
Preference number: 5 (lower is better)
Translates to: SCWREGGRTPRVGKWMENPCRQR*LSMLAA
Trigger: GGCAGCCAGCATGCTCAACAAGCGCTGCCGACACGG...ATTTTCCATCCATTTGCCAACCCTGGGTGTCCGTCCACCTTCTCTCCAGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS GCA 90 bp CTTTCTCGGAGGAACGTGCAGCAAGCATCTTTGATGCTCTGCAGCTaGAGGAAGCTTGCCCCCATCAGCAGGGACTGCACATTCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LSRRNVQQASLMLCS*RKLAPISRDCTFCW
Trigger: CCAGCAGAATGTGCAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCTCCGAGAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS GCA 90 bp CAGGCATGGTCCCCTCTGCTCCCGGTCATACCTGACCCAGGCCAATaGAGCTTCAAAAACCTTTCTCGGAGGAACGTGCAGCAAGCATCT +
Preference number: 5 (lower is better)
Translates to: QAWSPLLPVIPDPGQ*SFKNLSRRNVQQAS
Trigger: AGATGCTTGCTGCACGTTCCTCCGAGAAAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR CAA 90 bp GCCCGGCTCTTTACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAGTCACGTCGCATAGCTaGCCCTGCCGCCGGATCTCC +
Preference number: 5 (lower is better)
Translates to: ARLFTLQGTRVLPSESMAVTSHS*PCRRIS
Trigger: GGAGATCCGGCGGCAGGGCAAGCTATGCGACGTGAC...TGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGTAAAGAGCCGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR CAA 90 bp TTGCTGGCCAAAAAGGGAAAGGATGTACGTGGGAGTGGGGATCTGTGGGAGCGCGTGCAGCAAGCATCTTaGATGCTCTGCAGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: LLAKKGKDVRGSGDLWERVQQAS*MLCSCR
Trigger: CCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCAC...GCGCTCCCACAGATCCCCACTCCCACGTACATCCTTTCCCTTTTTGGCCAGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp ACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTAAGGTCCCATCCAGAGGGAGGGTGCAGCAAGCATCTTaGATGCTCTGCAGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: TVSLWVLLCYGKVPSRGRVQQAS*MLCSCR
Trigger: CCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCAC...CCTCCCTCTGGATGGGACCTTACCATAGCACAGAAGGACCCAGAGGGAGACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp TGGTTCTCAGCACCTTCACAGTCGAGGCTGGGCAGTACATTCACAGAAGGACTTAGAGGCAGGCGGATATaGGACAGCAGCTCGGGCAGG +
Preference number: 5 (lower is better)
Translates to: WFSAPSQSRLGSTFTEGLRGRRI*DSSSGR
Trigger: CCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCT...AAGTCCTTCTGTGAATGTACTGCCCAGCCTCGACTGTGAAGGTGCTGAGAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp CCACCAGGCGTGTCGGACCCACCTCCTGCTACATTCTTTCCAGTGTCCTTGGGTCACTTTTCCCAGCGATaGGCGATAGGGTCGAACACT +
Preference number: 5 (lower is better)
Translates to: PPGVSDPPPATFFPVSLGHFSQR*AIGSNT
Trigger: AGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTG...ACCCAAGGACACTGGAAAGAATGTAGCAGGAGGTGGGTCCGACACGCCTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGCCCATGGCACTTCGCTaGCTATTCATGCTCCCCACT +
Preference number: 5 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQPMALR*LFMLPT
Trigger: AGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGGG...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS TCA 90 bp CATGGAAGTACGGGATGGAGGCCGCTAAGACGATCCGGTGAGCACTaGACTTGTGGTCCCCAATCTTTAGCGTCACGTCGCATAGCTTGC +
Preference number: 5 (lower is better)
Translates to: HGSTGWRPLRRSGEH*TCGPQSLASRRIAC
Trigger: GCAAGCTATGCGACGTGACGCTAAAGATTGGGGACCACAAGTTCAGTGCTCACCGGATCGTCTTAGCGGCCTCCATCCCGTACTTCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS GCA 90 bp GAACGTGCAGCAAGCATCTTTGATGCTCTGCAGCTGCAGGAAGCTTaGCCCCATCAGCAGGGACTGCACATTCTGCTGGTCGATAGCAAG +
Preference number: 5 (lower is better)
Translates to: ERAASIFDALQLQEA*PHQQGLHILLVDSK
Trigger: CTTGCTATCGACCAGCAGAATGTGCAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS TCA 90 bp GCAGCTTCAAAAACCTTTCTCGGAGGAACGTGCAGCAAGCATCTTTaGTGCTCTGCAGCTGCAGGAAGCTTGCCCCCATCAGCAGGGACT +
Preference number: 5 (lower is better)
Translates to: AASKTFLGGTCSKHL*CSAAAGSLPPSAGT
Trigger: AGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCTCCGAGAAAGGTTTTTGAAGCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS GCA 90 bp AAGGGCAGGGCCAGGAACTCTTCGGACAGAGACACCTCTACAAAGTaGTGGTGGATGAAGCTGTTGGCTGCATCGTACAACACAGCACAC +
Preference number: 5 (lower is better)
Translates to: KGRARNSSDRDTSTK*WWMKLLAASYNTAH
Trigger: GTGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTCTCTGTCCGAAGAGTTCCTGGCCCTGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS-3UTR CAA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAAGCAGCTGCAGGAAGCTaGCCCCCATCAGCAGGGACT +
Preference number: 5 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKAAAGS*PPSAGT
Trigger: AGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGC...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp CTGCCCAGTGCACTGGTAAGAGACAGTCTCCCTCTGGGTCCTTCTGTGCTATGGTGGTGGATGAAGCTGTaGGCTGCATCGTACAACACA +
Preference number: 5 (lower is better)
Translates to: LPSALVRDSLPLGPSVLWWWMKL*AASYNT
Trigger: TGTGTTGTACGATGCAGCCAACAGCTTCATCCACCA...CCATAGCACAGAAGGACCCAGAGGGAGACTGTCTCTTACCAGTGCACTGGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp GAACCGTCTTCTAGGCCGATCCAGGCAGGCAGCAGAGGGCAAGAAACCAATCAGTGGTGGATGAAGCTGTaGGCTGCATCGTACAACACA +
Preference number: 5 (lower is better)
Translates to: EPSSRPIQAGSRGQETNQWWMKL*AASYNT
Trigger: TGTGTTGTACGATGCAGCCAACAGCTTCATCCACCA...CTGATTGGTTTCTTGCCCTCTGCTGCCTGCCTGGATCGGCCTAGAAGACGGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS TCA 90 bp AACATAGCATGGAAGTACGGGATGGAGGCCGCTAAGACGATCCGGTaGGCACTGAACTTGTGGTCCCCAATCTTTAGCGTCACGTCGCAT +
Preference number: 5 (lower is better)
Translates to: NIAWKYGMEAAKTIR*ALNLWSPIFSVTSH
Trigger: ATGCGACGTGACGCTAAAGATTGGGGACCACAAGTTCAGTGCTCACCGGATCGTCTTAGCGGCCTCCATCCCGTACTTCCATGCTATGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS GCA 90 bp AAAAACCTTTCTCGGAGGAACGTGCAGCAAGCATCTTTGATGCTCTaGAGCTGCAGGAAGCTTGCCCCCATCAGCAGGGACTGCACATTC +
Preference number: 5 (lower is better)
Translates to: KNLSRRNVQQASLML*SCRKLAPISRDCTF
Trigger: GAATGTGCAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCTCCGAGAAAGGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS-3UTR CAA 90 bp GCTGTGGGTGAAGAGGGTCAGGATTCCTACTTAGTTCCATCAGAGGCTGGGCTTCACTTTTCCCAGCGATaGGCGATAGGGTCGAACACT +
Preference number: 5 (lower is better)
Translates to: AVGEEGQDSYLVPSEAGLHFSQR*AIGSNT
Trigger: AGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTG...AAGCCCAGCCTCTGATGGAACTAAGTAGGAATCCTGACCCTCTTCACCCACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS CCA 90 bp AGGGCCAGGAACTCTTCGGACAGAGACACCTCTACAAAGTGCTGGTaGATGAAGCTGTTGGCTGCATCGTACAACACAGCACACATCATC +
Preference number: 5 (lower is better)
Translates to: RARNSSDRDTSTKCW*MKLLAASYNTAHII
Trigger: GATGATGTGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTCTCTGTCCGAAGAGTTCCTGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS-3UTR CAA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCATGTCGGCAGCGCTTGTaGAGCATGCTGGCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPCRQRL*SMLAAG
Trigger: CCCGGCAGCCAGCATGCTCAACAAGCGCTGCCGACA...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp GGGAGGAGGAGCATTGAGTCTCTTCACGAGGTCATTTGCCAAGATCAGGGGAAGCCACTGAGCTTAGGTTaGACTGTCCATCGTAACCTC +
Preference number: 5 (lower is better)
Translates to: GRRSIESLHEVICQDQGKPLSLG*TVHRNL
Trigger: GAGGTTACGATGGACAGTCAAACCTAAGCTCAGTGG...CTTCCCCTGATCTTGGCAAATGACCTCGTGAAGAGACTCAATGCTCCTCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS TCA 90 bp CCAGGAACTCTTCGGACAGAGACACCTCTACAAAGTGCTGGTGGATaGAGCTGTTGGCTGCATCGTACAACACAGCACACATCATCGTCT +
Preference number: 5 (lower is better)
Translates to: PGTLRTETPLQSAGG*SCWLHRTTQHTSSS
Trigger: AGACGATGATGTGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTCTCTGTCCGAAGAGTTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS GCA 90 bp GCCTCCAGGGCACTTGGGTCCATTCCCTGCATTACAATCTCATCCTaGTTGCACTCCATCATGTCGTTCGTAAACATAGCATGGAAGTAC +
Preference number: 5 (lower is better)
Translates to: ASRALGSIPCITISS*LHSIMSFVNIAWKY
Trigger: GTACTTCCATGCTATGTTTACGAACGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAGGGAATGGACCCAAGTGCCCTGGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS-3UTR CAA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTGTGCAGCAAGCATCTTaGATGCTCTGCAGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTVQQAS*MLCSCR
Trigger: CCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCAC...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp CCGAATGTGGGAGTGGACACCACTGTTGTCATGGTTGATGGTTCTCCATGTAAATGGTGGATGAAGCTGTaGGCTGCATCGTACAACACA +
Preference number: 5 (lower is better)
Translates to: PNVGVDTTVVMVDGSPCKWWMKL*AASYNT
Trigger: TGTGTTGTACGATGCAGCCAACAGCTTCATCCACCA...TTTACATGGAGAACCATCAACCATGACAACAGTGGTGTCCACTCCCACATTCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp CTTCCTTGCAGCAGCAAAAGACATTTCTTTGTAAGCCTTTATACCATGACGCCACCCATGGCACTTCGCTaGCTATTCATGCTCCCCACT +
Preference number: 5 (lower is better)
Translates to: LPCSSKRHFFVSLYTMTPPMALR*LFMLPT
Trigger: AGTGGGGAGCATGAATAGCAAGCGAAGTGCCATGGG...TGGCGTCATGGTATAAAGGCTTACAAAGAAATGTCTTTTGCTGCTGCAAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp ACATTGCAGGGAACAAGAGTCCTTCCTTCTGAATCTATGGCAATTGCACACACTCCACTGAGCTTAGGTTaGACTGTCCATCGTAACCTC +
Preference number: 5 (lower is better)
Translates to: TLQGTRVLPSESMAIAHTPLSLG*TVHRNL
Trigger: GAGGTTACGATGGACAGTCAAACCTAAGCTCAGTGG...AGTGTGTGCAATTGCCATAGATTCAGAAGGAAGGACTCTTGTTCCCTGCAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS-3UTR CAA 90 bp AGGTACAAATGGTCAATGTGCTCTGGAAGCGTTGTGATGAGGGAGAGTTATTCACCACTGAGCTTAGGTTaGACTGTCCATCGTAACCTC +
Preference number: 5 (lower is better)
Translates to: RYKWSMCSGSVVMRESYSPLSLG*TVHRNL
Trigger: GAGGTTACGATGGACAGTCAAACCTAAGCTCAGTGG...TGAATAACTCTCCCTCATCACAACGCTTCCAGAGCACATTGACCATTTGTACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS TCA 72 bp GCCCAGCGATGGACGTGCAGCATCGGGGCCGAGTCCTaGAAGCTGGCAGGTGGGGCCGGCGCTCTGGCATCA +
Preference number: 6 (lower is better)
Translates to: AQRWTCSIGAES*KLAGGAGALAS
Trigger: TGATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGATGCTGCACGTCCATCGCTGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CCA 72 bp AGGCAGGCGGATATTGGACAGCAGCTCGGGCAGGCATaGTCCCCTCTGCTCCCGGTCATACCTGACCCAGGC +
Preference number: 6 (lower is better)
Translates to: RQADIGQQLGQA*SPLLPVIPDPG
Trigger: GCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CCA 72 bp GATGGACGTGCAGCATCGGGGCCGAGTCCTGAAAGCTaGCAGGTGGGGCCGGCGCTCTGGCATCAGATGATA +
Preference number: 6 (lower is better)
Translates to: DGRAASGPSPES*QVGPALWHQMI
Trigger: TATCATCTGATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGGCCCCGATGCTGCACGTCCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CAA 72 bp GATAAGAACTGGGGCCGGCAAAGAGGCAGGCGGATATaGGACAGCAGCTCGGGCAGGCATGGTCCCCTCTGC +
Preference number: 6 (lower is better)
Translates to: DKNWGRQRGRRI*DSSSGRHGPLC
Trigger: GCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGGCCCCAGTTCTTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CAA 90 bp ACTCGATCTGATAAGAACTGGGGCCGGCAAAGAGGCAGGCGGATATaGGACAGCAGCTCGGGCAGGCATGGTCCCCTCTGCTCCCGGTCA +
Preference number: 6 (lower is better)
Translates to: TRSDKNWGRQRGRRI*DSSSGRHGPLCSRS
Trigger: TGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGGCCCCAGTTCTTATCAGATCGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS TCA 72 bp CGGGCAGGCATGGTCCCCTCTGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTTCAAAAACCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: RAGMVPSAPGHT*PRPMQLQKPAP
Trigger: AGGAGCAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CCA 72 bp ATAAGAACTGGGGCCGGCAAAGAGGCAGGCGGATATTaGACAGCAGCTCGGGCAGGCATGGTCCCCTCTGCT +
Preference number: 6 (lower is better)
Translates to: IRTGAGKEAGGY*TAARAGMVPSA
Trigger: AGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGGCCCCAGTTCTTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS TCA 72 bp CGGGCAGGCATGGTCCCCTCTGCTCCCGGTCATACCTaGCCCAGGCCAATGCAGCTTCAAAAACCTTTCTCG +
Preference number: 6 (lower is better)
Translates to: RAGMVPSAPGHT*PRPMQLQKPFS
Trigger: CGAGAAAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGGTATGACCGGGAGCAGAGGGGACCATGCCTGCCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS CAA 90 bp AAGCTGGCAGGTGGGGCCGGCGCTCTGGCATCAGATGATAGTCCTTaGCTTCATCGACCAGGTCCCTGCATTTGTGACAGCACCGTACCA +
Preference number: 6 (lower is better)
Translates to: KLAGGAGALASDDSP*LHRPGPCICDSTVP
Trigger: TGGTACGGTGCTGTCACAAATGCAGGGACCTGGTCGATGAAGCAAAGGACTATCATCTGATGCCAGAGCGCCGGCCCCACCTGCCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS TCA 72 bp ACGGGATGGAGGCCGCTAAGACGATCCGGTGAGCACTaGACTTGTGGTCCCCAATCTTTAGCGTCACGTCGC +
Preference number: 6 (lower is better)
Translates to: TGWRPLRRSGEH*TCGPQSLASRR
Trigger: GCGACGTGACGCTAAAGATTGGGGACCACAAGTTCAGTGCTCACCGGATCGTCTTAGCGGCCTCCATCCCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS GCA 72 bp TCTCGGAGGAACGTGCAGCAAGCATCTTTGATGCTCTaGAGCTGCAGGAAGCTTGCCCCCATCAGCAGGGAC +
Preference number: 6 (lower is better)
Translates to: SRRNVQQASLML*SCRKLAPISRD
Trigger: GTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCTCCGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS CAA 72 bp GGTGGGGCCGGCGCTCTGGCATCAGATGATAGTCCTTaGCTTCATCGACCAGGTCCCTGCATTTGTGACAGC +
Preference number: 6 (lower is better)
Translates to: GGAGALASDDSP*LHRPGPCICDS
Trigger: GCTGTCACAAATGCAGGGACCTGGTCGATGAAGCAAAGGACTATCATCTGATGCCAGAGCGCCGGCCCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS GCA 72 bp AGGAACGTGCAGCAAGCATCTTTGATGCTCTGCAGCTaGAGGAAGCTTGCCCCCATCAGCAGGGACTGCACA +
Preference number: 6 (lower is better)
Translates to: RNVQQASLMLCS*RKLAPISRDCT
Trigger: TGTGCAGTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS GCA 72 bp GTGGGGCCGGCGCTCTGGCATCAGATGATAGTCCTTTaGTTCATCGACCAGGTCCCTGCATTTGTGACAGCA +
Preference number: 6 (lower is better)
Translates to: VGPALWHQMIVL*FIDQVPAFVTA
Trigger: TGCTGTCACAAATGCAGGGACCTGGTCGATGAAGCAAAGGACTATCATCTGATGCCAGAGCGCCGGCCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS TCA 72 bp TGGAAGTACGGGATGGAGGCCGCTAAGACGATCCGGTaGGCACTGAACTTGTGGTCCCCAATCTTTAGCGTC +
Preference number: 6 (lower is better)
Translates to: WKYGMEAAKTIR*ALNLWSPIFSV
Trigger: GACGCTAAAGATTGGGGACCACAAGTTCAGTGCTCACCGGATCGTCTTAGCGGCCTCCATCCCGTACTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS TCA 72 bp TCGGCAAACTGGCGCACACCCAGGCAATTTTTGGGGTaGAGCCTTTCTCGGAGGAACGTGCAGCAAGCATCT +
Preference number: 6 (lower is better)
Translates to: SANWRTPRQFLG*SLSRRNVQQAS
Trigger: AGATGCTTGCTGCACGTTCCTCCGAGAAAGGCTTCACCCCAAAAATTGCCTGGGTGTGCGCCAGTTTGCCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS CCA 72 bp ACCAGGTCATCTTGCTGCACTCGATCTGATAAGAACTaGGGCCGGCAAAGAGGCAGGCGGATATTGGACAGC +
Preference number: 6 (lower is better)
Translates to: TRSSCCTRSDKN*GRQRGRRILDS
Trigger: GCTGTCCAATATCCGCCTGCCTCTTTGCCGGCCCCAGTTCTTATCAGATCGAGTGCAGCAAGATGACCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS CAA 90 bp TGCAGCTTCAAAAACCTTTCTCGGAGGAACGTGCAGCAAGCATCTTaGATGCTCTGCAGCTGCAGGAAGCTTGCCCCCATCAGCAGGGAC +
Preference number: 6 (lower is better)
Translates to: CSFKNLSRRNVQQAS*MLCSCRKLAPISRD
Trigger: GTCCCTGCTGATGGGGGCAAGCTTCCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCTCCGAGAAAGGTTTTTGAAGCTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000197336.5
CDS CCA 72 bp TGCTTGCACTCCATCATGTCGTTCGTAAACATAGCATaGAAGTACGGGATGGAGGCCGCTAAGACGATCCGG +
Preference number: 6 (lower is better)
Translates to: CLHSIMSFVNIA*KYGMEAAKTIR
Trigger: CCGGATCGTCTTAGCGGCCTCCATCCCGTACTTCCATGCTATGTTTACGAACGACATGATGGAGTGCAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS CAA 90 bp TCTTCGGACAGAGACACCTCTACAAAGTGCTGGTGGATGAAGCTGTaGGCTGCATCGTACAACACAGCACACATCATCGTCTCGGCAAAC +
Preference number: 6 (lower is better)
Translates to: SSDRDTSTKCWWMKL*AASYNTAHIIVSAN
Trigger: GTTTGCCGAGACGATGATGTGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTCTCTGTCCGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS TCA 72 bp CTTCGGACAGAGACACCTCTACAAAGTGCTGGTGGATaGAGCTGTTGGCTGCATCGTACAACACAGCACACA +
Preference number: 6 (lower is better)
Translates to: LRTETPLQSAGG*SCWLHRTTQHT
Trigger: TGTGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATCCACCAGCACTTTGTAGAGGTGTCTCTGTCCGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000198164.5
ENSMUST00000198400.5
ENSMUST00000200256.2
CDS GCA 72 bp TTGATGAGAGCCTCCAGGGCACTTGGGTCCATTCCCTaGATTACAATCTCATCCTGCTTGCACTCCATCATG +
Preference number: 6 (lower is better)
Translates to: LMRASRALGSIP*ITISSCLHSIM
Trigger: CATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAGGGAATGGACCCAAGTGCCCTGGAGGCTCTCATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
ENSMUST00000198400.5
CDS CAA 90 bp TCCAGGGCACTTGGGTCCATTCCCTGCATTACAATCTCATCCTGCTaGCACTCCATCATGTCGTTCGTAAACATAGCATGGAAGTACGGG +
Preference number: 6 (lower is better)
Translates to: SRALGSIPCITISSC*HSIMSFVNIAWKYG
Trigger: CCCGTACTTCCATGCTATGTTTACGAACGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAGGGAATGGACCCAAGTGCCCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS GCA 72 bp GCACTTGGGTCCATTCCCTGCATTACAATCTCATCCTaGTTGCACTCCATCATGTCGTTCGTAAACATAGCA +
Preference number: 6 (lower is better)
Translates to: ALGSIPCITISS*LHSIMSFVNIA
Trigger: TGCTATGTTTACGAACGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAGGGAATGGACCCAAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5
CDS CAA 72 bp CTTGGGTCCATTCCCTGCATTACAATCTCATCCTGCTaGCACTCCATCATGTCGTTCGTAAACATAGCATGG +
Preference number: 6 (lower is better)
Translates to: LGSIPCITISSC*HSIMSFVNIAW
Trigger: CCATGCTATGTTTACGAACGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAGGGAATGGACCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068025.13
ENSMUST00000197336.5
ENSMUST00000198164.5