Pregenerated sensors for KLHDC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045259Ensembl transcript IDs: ENSMUST00000061878.5
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGGCATCTGTTTTCTGATGCCCTCTTCTaGCACAAAGGTGTACATGCA | + |
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Preference number: 2 (lower is better) Translates to: SDGSTVKSSVCSSRGHLFSDALF*HKGVHA Trigger: TGCATGTACACCTTTGTGCCAGAAGAGGGCATCAGA...AAACAGATGCCCCCTGGAAGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| 3UTR TCA 72 bp | ACCACATGGTGGCTCACAACCATCTATAATGGGGTCTaGTGCCCTCTTCTGGCACAAAGGTGTACATGCAAA | + |
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Preference number: 3 (lower is better) Translates to: TTWWLTTIYNGV*CPLLAQRCTCK Trigger: TTTGCATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGTGAGCCACCATGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | GAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGAGTGCCGCGTCGTGGTaGCTGCGAAGGGGACTACCT | + |
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Preference number: 4 (lower is better) Translates to: ERWLRWLNSEELCLLFQGSAASW*LRRGLP Trigger: AGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACT...CCCCTGGAAGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | GAGGGCTGGAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTAGGCGAGTGCAGGTGTaGCTGCTGAGGCCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: EGWRDGSDGSTVKSSVCSRRVQV*LLRPAG Trigger: TCCTGCTGGCCTCAGCAGCCACACCTGCACTCGCCT...AGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTCCAGCCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | GAGGGCTGGAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTCCTTGCTGCAGTCCCTaGCCACTGCTCACAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: EGWRDGSDGSTVKSSVCSPCCSP*PLLTSL Trigger: AAGGCTTGTGAGCAGTGGGCAGGGACTGCAGCAAGG...AGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTCCAGCCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | GAGGGCTGGAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTCAGGATGCAAACCTGTaGGCTAGCTGTCCTGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: EGWRDGSDGSTVKSSVCSQDANL*ASCPAV Trigger: GACGGCAGGACAGCTAGCCCACAGGTTTGCATCCTG...AGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTCCAGCCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | GAGGGCTGGAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTGTCCACGGTCTGTACTaGGGAAGTGGAACCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: EGWRDGSDGSTVKSSVCSVHGLY*GSGTTE Trigger: CTCTGTGGTTCCACTTCCCCAGTACAGACCGTGGAC...AGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTCCAGCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | TCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGGTGCGGCCCAGCAGTTaGCAGCAGGGCAGCACAGTG | + |
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Preference number: 4 (lower is better) Translates to: SIMGSDALFWHKGVHANRVRPSS*QQGSTV Trigger: CACTGTGCTGCCCTGCTGCCAACTGCTGGGCCGCAC...CCTATTTGCATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR TCA 90 bp | TCACAACCATCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATCCTCCAGGTCCAGGTTaGGCCTCTTGCTCGACCGAG | + |
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Preference number: 4 (lower is better) Translates to: SQPSIMGSDALFWHKGVHPPGPG*ASCSTE Trigger: CTCGGTCGAGCAAGAGGCTCAACCTGGACCTGGAGG...ATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR TCA 90 bp | CATGGTGGCTCACAACCATCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAATACCTCCGGTCCAACTaGGTTGCAGCCCCCAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: HGGSQPSIMGSDALFWHKYLRSN*VAAPKE Trigger: CTCTTTGGGGGCTGCAACTCAGTTGGACCGGAGGTA...TTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGTGAGCCACCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR TCA 90 bp | GGGCTGGAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCTGGTTGTTCCTCCTTaGTTTTCCCAGGGCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: GLERWLRWLNSEELCLLFLVVPP*FSQGSI Trigger: AATGGAGCCCTGGGAAAATCAAGGAGGAACAACCAG...GAAGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTCCAGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | TCACAACCATCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATCAGCAGGAGGGCAGTTaGCAGGGTTCGCAGCCCATG | + |
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Preference number: 4 (lower is better) Translates to: SQPSIMGSDALFWHKGVHQQEGS*QGSQPM Trigger: CATGGGCTGCGAACCCTGGCAACTGCCCTCCTGCTG...ATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | GAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGACTTTAACGTGTAGATaGTTCCGTAGCGTCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ERWLRWLNSEELCLLFQGTLTCR*FRSVAE Trigger: CTCAGCGACGCTACGGAAGCATCTACACGTTAAAGT...CCCCTGGAAGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | CTGATGAGATCGCTTTGTAGGTTTGCCACAACACAGAGTGCCTCCCTGCTGTTCCGCTTGGCCTACAGCTaGGTCAAAGATCACAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: LMRSLCRFATTQSASLLFRLAYS*VKDHSV Trigger: GACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCG...GAACAGCAGGGAGGCACTCTGTGTTGTGGCAAACCTACAAAGCGATCTCATCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | TATTATCCCCAACAACCACATGGTGGCTCACAACCATCTATAATGGGGTCTGATTTCCCAGGGCTCCATTaGCCTGCTACCTCCGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: YYPQQPHGGSQPSIMGSDFPGLH*PATSGP Trigger: TGGACCGGAGGTAGCAGGGCAATGGAGCCCTGGGAA...ATCAGACCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGGATAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | CTGATGAGATCGCTTTGTAGGTTTGCCACAACACAGAGTGCCTCCCTGCTGTTCACTGCTCACAAGCCTTaGAAGCTGTTCCCTCAAATG | + |
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Preference number: 4 (lower is better) Translates to: LMRSLCRFATTQSASLLFTAHKP*KLFPQM Trigger: CATTTGAGGGAACAGCTTGCAAGGCTTGTGAGCAGT...GAACAGCAGGGAGGCACTCTGTGTTGTGGCAAACCTACAAAGCGATCTCATCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | TATTATCCCCAACAACCACATGGTGGCTCACAACCATCTATAATGGGGTCTGATGCAGTCCCTGCCCACTaGTCACAAGCCTTGCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: YYPQQPHGGSQPSIMGSDAVPAH*SQALQA Trigger: AGCTTGCAAGGCTTGTGAGCAGTGGGCAGGGACTGC...ATCAGACCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGGATAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR GCA 90 bp | CATGGTGGCTCACAACCATCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAACAGAGGCGGAGACTTaGGGGTATCGTAGATGTAGA | + |
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Preference number: 4 (lower is better) Translates to: HGGSQPSIMGSDALFWHKTEAET*GYRRCR Trigger: TCTACATCTACGATACCCGCAAGTCTCCGCCTCTGT...TTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGTGAGCCACCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | GAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGCAAATGAGGGGCAACTaGTTGTTCCTCCTTGATTTT | + |
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Preference number: 4 (lower is better) Translates to: ERWLRWLNSEELCLLFQGQMRGN*LFLLDF Trigger: AAAATCAAGGAGGAACAACCAGTTGCCCCTCATTTG...CCCCTGGAAGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CCA 90 bp | TCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGAGTTCCGTGCATGAATaGAAGGCACGAGCCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: SIMGSDALFWHKGVHANRSSVHE*KARARS Trigger: GCTTCTGGCTCGTGCCTTCCATTCATGCACGGAACT...CCTATTTGCATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | CCCGTCCCAGCCACCCACCACGCAGAGCCAACGACCTCCCACCAGTaGCGCGTCGTGGTGGCTGCGAAGGGGACTACCTCGGGCTACCAG | + |
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Preference number: 5 (lower is better) Translates to: PVPATHHAEPTTSHQ*RVVVAAKGTTSGYQ Trigger: CTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCGTGGTGGGTGGCTGGGACGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | CCCACCACGCAGAGCCAACGACCTCCCACCAGTGCCGCGTCGTGGTaGCTGCGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: PTTQSQRPPTSAASW*LRRGLPRATSRTAW Trigger: CCAAGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCGTGGTGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | CCACCCACCACGCAGAGCCAACGACCTCCCACCAGTGCCGCGTCGTaGTGGCTGCGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCT | + |
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Preference number: 5 (lower is better) Translates to: PPTTQSQRPPTSAAS*WLRRGLPRATSRTA Trigger: AGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCGTGGTGGGTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | CCACGCAGAGCCAACGACCTCCCACCAGTGCCGCGTCGTGGTGGCTaGGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCTTGGCCTA | + |
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Preference number: 5 (lower is better) Translates to: PRRANDLPPVPRRGG*EGDYLGLPVAPLGL Trigger: TAGGCCAAGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCGTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | GCTGCTGAGGCCAGCAGGAGGGCAGTTGCCAGGGTTCGCAGCCCATaGTTCCCACACCTCTCTCTCCGTGTCCAGCGCGGCCACCGTGGA | + |
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Preference number: 5 (lower is better) Translates to: AAEASRRAVARVRSP*FPHLSLRVQRGHRG Trigger: TCCACGGTGGCCGCGCTGGACACGGAGAGAGAGGTGTGGGAAGCATGGGCTGCGAACCCTGGCAACTGCCCTCCTGCTGGCCTCAGCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | CCCATGCTTCCCACACCTCTCTCTCCGTGTCCAGCGCGGCCACCGTaGATAAGCGACGTGACCCGTCCCAGCCACCCACCACGCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: PMLPTPLSPCPARPP*ISDVTRPSHPPRRA Trigger: GGCTCTGCGTGGTGGGTGGCTGGGACGGGTCACGTCGCTTATCCACGGTGGCCGCGCTGGACACGGAGAGAGAGGTGTGGGAAGCATGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | CTGCCAGACACTCGCAGCTCCCCGTCTGAGAGGCGAGTGCAGGTGTaGCTGCTGAGGCCAGCAGGAGGGCAGTTGCCAGGGTTCGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: LPDTRSSPSERRVQV*LLRPAGGQLPGFAA Trigger: GGCTGCGAACCCTGGCAACTGCCCTCCTGCTGGCCTCAGCAGCCACACCTGCACTCGCCTCTCAGACGGGGAGCTGCGAGTGTCTGGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | TGTAGATGCTTCCGTAGCGTCGCTGAGTGTGGGTACCACCCTCTCTaGCAGACACTCGCAGCTCCCCGTCTGAGAGGCGAGTGCAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: CRCFRSVAECGYHPL*QTLAAPRLRGECRC Trigger: ACACCTGCACTCGCCTCTCAGACGGGGAGCTGCGAGTGTCTGGCAGAGAGGGTGGTACCCACACTCAGCGACGCTACGGAAGCATCTACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | TGGTGGCTGCGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCTTaGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTGCTGGGCACT | + |
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Preference number: 5 (lower is better) Translates to: WWLRRGLPRATSRTA*PTAGSKITVSLLGT Trigger: AGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | AAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGTACTaGGGAAGTGGAACCACAGAGGCGGAGACTTGCGGGTATCGTAGA | + |
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Preference number: 5 (lower is better) Translates to: KGKSDGPRASVHGLY*GSGTTEAETCGYRR Trigger: TCTACGATACCCGCAAGTCTCCGCCTCTGTGGTTCCACTTCCCCAGTACAGACCGTGGACTGAAGCGCGTGGGCCATCGGACTTGCCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | CTTCTAGGAGACCCCCTACCAGATAGAACCGTCCTTCCAGTTCCGTaGATGAATGGAAGGCACGAGCCAGAAGCACGTCTCGCGCCACTG | + |
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Preference number: 5 (lower is better) Translates to: LLGDPLPDRTVLPVP*MNGRHEPEARLAPL Trigger: CAGTGGCGCGAGACGTGCTTCTGGCTCGTGCCTTCCATTCATGCACGGAACTGGAAGGACGGTTCTATCTGGTAGGGGGTCTCCTAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | GTCGCACCGCTTGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTaGTGGGCACTCTTGCACCACCTTCTAGGAGACCCCCTACCAGAT | + |
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Preference number: 5 (lower is better) Translates to: VAPLGLQLGQRSQCR*WALLHHLLGDPLPD Trigger: ATCTGGTAGGGGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | GAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTTCCAGGGGTCCAGGTTGAGCCTCTaGCTCGACCGAGGGTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: ERWLRWLNSEELCLLFQGSRLSL*LDRGSA Trigger: TGCAGACCCTCGGTCGAGCAAGAGGCTCAACCTGGA...CCCCTGGAAGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 90 bp | GCACCGCTTGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTGCTaGGCACTCTTGCACCACCTTCTAGGAGACCCCCTACCAGATAGA | + |
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Preference number: 5 (lower is better) Translates to: APLGLQLGQRSQCRC*ALLHHLLGDPLPDR Trigger: TCTATCTGGTAGGGGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | GAGGGCTGGAGAGATGGCTCAGATGGCTCAACAGTGAAGAGCTCTGTCTGCTCTCGTTGCTGGGCACTCTaGCACCACCTTCTAGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: EGWRDGSDGSTVKSSVCSRCWAL*HHLLGD Trigger: GTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACG...AGAGCAGACAGAGCTCTTCACTGTTGAGCCATCTGAGCCATCTCTCCAGCCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS TCA 90 bp | TTGCAAGCTGTTCCCTCAAATGAGGGGCAACTGGTTGTTCCTCCTTaGTTTTCCCAGGGCTCCATTGCCCTGCTACCTCCGGTCCAACTG | + |
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Preference number: 5 (lower is better) Translates to: LQAVPSNEGQLVVPP*FSQGSIALLPPVQL Trigger: CAGTTGGACCGGAGGTAGCAGGGCAATGGAGCCCTGGGAAAATCAAGGAGGAACAACCAGTTGCCCCTCATTTGAGGGAACAGCTTGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | TCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGCCAGCAGGAGGGCAGTaGCCAGGGTTCGCAGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: SIMGSDALFWHKGVHANRPAGGQ*PGFAAH Trigger: ATGGGCTGCGAACCCTGGCAACTGCCCTCCTGCTGG...CCTATTTGCATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 90 bp | TGTAGCAATAAGTTCGGGTCCTGTGGTCCAACTTTAACGTGTAGATaGTTCCGTAGCGTCGCTGAGTGTGGGTACCACCCTCTCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: CSNKFGSCGPTLTCR*FRSVAECGYHPLCQ Trigger: CTGGCAGAGAGGGTGGTACCCACACTCAGCGACGCTACGGAAGCATCTACACGTTAAAGTTGGACCACAGGACCCGAACTTATTGCTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | TATTATCCCCAACAACCACATGGTGGCTCACAACCATCTATAATGGGGTCTGATTTTCCCAGGGCTCCATaGCCCTGCTACCTCCGGTCC | + |
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Preference number: 5 (lower is better) Translates to: YYPQQPHGGSQPSIMGSDFPRAP*PCYLRS Trigger: GGACCGGAGGTAGCAGGGCAATGGAGCCCTGGGAAA...ATCAGACCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGGATAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | GGTGGCTCACAACCATCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTACTGGTTGTTCCTCCTaGATTTTCCCAGGGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: GGSQPSIMGSDALFWHKGTGCSS*IFPGLH Trigger: ATGGAGCCCTGGGAAAATCAAGGAGGAACAACCAGT...ACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGTGAGCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | GCTCTTCTAAAACGGATTCAGAGGGCTGGAGAGATGGCTCAGATGGCTCAACAGATGAGGGGCAACTGGTaGTTCCTCCTTGATTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: ALLKRIQRAGEMAQMAQQMRGNW*FLLDFP Trigger: GGGAAAATCAAGGAGGAACAACCAGTTGCCCCTCAT...CTGTTGAGCCATCTGAGCCATCTCTCCAGCCCTCTGAATCCGTTTTAGAAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | TATTATCCCCAACAACCACATGGTGGCTCACAACCATCTATAATGGGGTCTGATGGCCTGATCGTGAGGTaGTGTGGCAGCCTTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: YYPQQPHGGSQPSIMGSDGLIVR*CGSLLL Trigger: AAGAAGAAGGCTGCCACACAACCTCACGATCAGGCC...ATCAGACCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGGATAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS-3UTR CAA 90 bp | TCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGCACTGCTCACAAGCCTaGCAAGCTGTTCCCTCAAAT | + |
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Preference number: 5 (lower is better) Translates to: SIMGSDALFWHKGVHANRHCSQA*QAVPSN Trigger: ATTTGAGGGAACAGCTTGCAAGGCTTGTGAGCAGTG...CCTATTTGCATGTACACCTTTGTGCCAGAAGAGGGCATCAGACCCCATTATAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | GCCAACGACCTCCCACCAGTGCCGCGTCGTGGTGGCTaGGAAGGGGACTACCTCGGGCTACCAGTCGCACCG | + |
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Preference number: 6 (lower is better) Translates to: ANDLPPVPRRGG*EGDYLGLPVAP Trigger: CGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | GCCACCCACCACGCAGAGCCAACGACCTCCCACCAGTaGCGCGTCGTGGTGGCTGCGAAGGGGACTACCTCG | + |
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Preference number: 6 (lower is better) Translates to: ATHHAEPTTSHQ*RVVVAAKGTTS Trigger: CGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCGTGGTGGGTGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | GCCAGCAGGAGGGCAGTTGCCAGGGTTCGCAGCCCATaGTTCCCACACCTCTCTCTCCGTGTCCAGCGCGGC | + |
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Preference number: 6 (lower is better) Translates to: ASRRAVARVRSP*FPHLSLRVQRG Trigger: GCCGCGCTGGACACGGAGAGAGAGGTGTGGGAAGCATGGGCTGCGAACCCTGGCAACTGCCCTCCTGCTGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 72 bp | CAGAGCCAACGACCTCCCACCAGTGCCGCGTCGTGGTaGCTGCGAAGGGGACTACCTCGGGCTACCAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: QSQRPPTSAASW*LRRGLPRATSR Trigger: GCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 72 bp | CCCACACCTCTCTCTCCGTGTCCAGCGCGGCCACCGTaGATAAGCGACGTGACCCGTCCCAGCCACCCACCA | + |
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Preference number: 6 (lower is better) Translates to: PTPLSPCPARPP*ISDVTRPSHPP Trigger: TGGTGGGTGGCTGGGACGGGTCACGTCGCTTATCCACGGTGGCCGCGCTGGACACGGAGAGAGAGGTGTGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS TCA 72 bp | AAGCACGTCTCGCGCCACTGGCCTCCAGGTCCAGGTTaGGCCTCTTGCTCGACCGAGGGTCTGCACCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: KHVSRHWPPGPG*ASCSTEGLHPS Trigger: GCTGGGGTGCAGACCCTCGGTCGAGCAAGAGGCTCAACCTGGACCTGGAGGCCAGTGGCGCGAGACGTGCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 72 bp | ACGCAGAGCCAACGACCTCCCACCAGTGCCGCGTCGTaGTGGCTGCGAAGGGGACTACCTCGGGCTACCAGT | + |
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Preference number: 6 (lower is better) Translates to: TQSQRPPTSAAS*WLRRGLPRATS Trigger: ACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCACGACGCGGCACTGGTGGGAGGTCGTTGGCTCTGCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CAA 72 bp | GAAGCACGTCTCGCGCCACTGGCCTCCAGGTCCAGGTaGAGCCTCTTGCTCGACCGAGGGTCTGCACCCCAG | + |
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Preference number: 6 (lower is better) Translates to: EARLAPLASRSR*SLLLDRGSAPQ Trigger: CTGGGGTGCAGACCCTCGGTCGAGCAAGAGGCTCAACCTGGACCTGGAGGCCAGTGGCGCGAGACGTGCTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | TTCCGTAGCGTCGCTGAGTGTGGGTACCACCCTCTCTaGCAGACACTCGCAGCTCCCCGTCTGAGAGGCGAG | + |
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Preference number: 6 (lower is better) Translates to: FRSVAECGYHPL*QTLAAPRLRGE Trigger: CTCGCCTCTCAGACGGGGAGCTGCGAGTGTCTGGCAGAGAGGGTGGTACCCACACTCAGCGACGCTACGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CAA 90 bp | GTGGTGGCTGCGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCTaGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTGCTGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: VVAAKGTTSGYQSHR*AYSWVKDHSVVAGH Trigger: GTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGCAGCCACCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | GGCTCCATTGCCCTGCTACCTCCGGTCCAACTGAGTTaGAGCCCCCAAAGAGCAAAAGCTGATGACCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: GSIALLPPVQLS*SPQRAKADDPG Trigger: ACCCGGGTCATCAGCTTTTGCTCTTTGGGGGCTGCAACTCAGTTGGACCGGAGGTAGCAGGGCAATGGAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 72 bp | ACCTCGGGCTACCAGTCGCACCGCTTGGCCTACAGCTaGGTCAAAGATCACAGTGTCGTTGCTGGGCACTCT | + |
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Preference number: 6 (lower is better) Translates to: TSGYQSHRLAYS*VKDHSVVAGHS Trigger: AGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGACTGGTAGCCCGAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 72 bp | CGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCTTaGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: RRGLPRATSRTA*PTAGSKITVSL Trigger: CAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CAA 72 bp | GCGAAGGGGACTACCTCGGGCTACCAGTCGCACCGCTaGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTT | + |
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Preference number: 6 (lower is better) Translates to: AKGTTSGYQSHR*AYSWVKDHSVV Trigger: AACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGACTGGTAGCCCGAGGTAGTCCCCTTCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CAA 90 bp | AGTCGCACCGCTTGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTaGCTGGGCACTCTTGCACCACCTTCTAGGAGACCCCCTACCAGA | + |
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Preference number: 6 (lower is better) Translates to: SRTAWPTAGSKITVS*LGTLAPPSRRPPTR Trigger: TCTGGTAGGGGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGCGGTGCGACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS TCA 72 bp | CCCTACCAGATAGAACCGTCCTTCCAGTTCCGTGCATaGATGGAAGGCACGAGCCAGAAGCACGTCTCGCGC | + |
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Preference number: 6 (lower is better) Translates to: PYQIEPSFQFRA*MEGTSQKHVSR Trigger: GCGCGAGACGTGCTTCTGGCTCGTGCCTTCCATTCATGCACGGAACTGGAAGGACGGTTCTATCTGGTAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS TCA 72 bp | AATAGTACAGCGAAGGGTCCCACCACTGAACAGGAATaGTGGCGCAGGCTCTGGGGTCCTTGCTGCAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: NSTAKGPTTEQE*WRRLWGPCCSP Trigger: GGGACTGCAGCAAGGACCCCAGAGCCTGCGCCATCATTCCTGTTCAGTGGTGGGACCCTTCGCTGTACTATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | GACCCCCTACCAGATAGAACCGTCCTTCCAGTTCCGTaGATGAATGGAAGGCACGAGCCAGAAGCACGTCTC | + |
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Preference number: 6 (lower is better) Translates to: DPLPDRTVLPVP*MNGRHEPEARL Trigger: GAGACGTGCTTCTGGCTCGTGCCTTCCATTCATGCACGGAACTGGAAGGACGGTTCTATCTGGTAGGGGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | CTTGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTaGTGGGCACTCTTGCACCACCTTCTAGGAGACCCC | + |
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Preference number: 6 (lower is better) Translates to: LGLQLGQRSQCR*WALLHHLLGDP Trigger: GGGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | ACTGGTTGTTCCTCCTTGATTTTCCCAGGGCTCCATTaGCCTGCTACCTCCGGTCCAACTGAGTTGCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: TGCSSLIFPGLH*PATSGPTELQP Trigger: GGGCTGCAACTCAGTTGGACCGGAGGTAGCAGGGCAATGGAGCCCTGGGAAAATCAAGGAGGAACAACCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | TCCTTGCTGCAGTCCCTGCCCACTGCTCACAAGCCTTaGAAGCTGTTCCCTCAAATGAGGGGCAACTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: SLLQSLPTAHKP*KLFPQMRGNWL Trigger: CAACCAGTTGCCCCTCATTTGAGGGAACAGCTTGCAAGGCTTGTGAGCAGTGGGCAGGGACTGCAGCAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CCA 72 bp | GGCCTACAGCTGGGTCAAAGATCACAGTGTCGTTGCTaGGCACTCTTGCACCACCTTCTAGGAGACCCCCTA | + |
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Preference number: 6 (lower is better) Translates to: GLQLGQRSQCRC*ALLHHLLGDPL Trigger: TAGGGGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CAA 72 bp | GCTTGGCCTACAGCTGGGTCAAAGATCACAGTGTCGTaGCTGGGCACTCTTGCACCACCTTCTAGGAGACCC | + |
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Preference number: 6 (lower is better) Translates to: AWPTAGSKITVS*LGTLAPPSRRP Trigger: GGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAGCTGTAGGCCAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS GCA 72 bp | AAGTTCGGGTCCTGTGGTCCAACTTTAACGTGTAGATaGTTCCGTAGCGTCGCTGAGTGTGGGTACCACCCT | + |
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Preference number: 6 (lower is better) Translates to: KFGSCGPTLTCR*FRSVAECGYHP Trigger: AGGGTGGTACCCACACTCAGCGACGCTACGGAAGCATCTACACGTTAAAGTTGGACCACAGGACCCGAACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS CAA 72 bp | CTGGGTCAAAGATCACAGTGTCGTTGCTGGGCACTCTaGCACCACCTTCTAGGAGACCCCCTACCAGATAGA | + |
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Preference number: 6 (lower is better) Translates to: LGQRSQCRCWAL*HHLLGDPLPDR Trigger: TCTATCTGGTAGGGGGTCTCCTAGAAGGTGGTGCAAGAGTGCCCAGCAACGACACTGTGATCTTTGACCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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| CDS TCA 72 bp | CCACTGCTCACAAGCCTTGCAAGCTGTTCCCTCAAATaGGGGGCAACTGGTTGTTCCTCCTTGATTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PLLTSLASCSLK*GATGCSSLIFP Trigger: TGGGAAAATCAAGGAGGAACAACCAGTTGCCCCTCATTTGAGGGAACAGCTTGCAAGGCTTGTGAGCAGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061878.5 |
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