Pregenerated sensors for KLHDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020978Ensembl transcript IDs: ENSMUST00000021362.5
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TGGCTGTTCTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATaGCAGCTTGTAACTCCTGTTCCAGGGAATCCAACACCCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: WLFFHRAHVQLPAPT*QLVTPVPGNPTPSG Trigger: GCCTGAGGGTGTTGGATTCCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAGAACAGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| 3UTR-3UTR GCA 90 bp | ACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGAATCCAACCGGGGCTGTTCTCCATaGAAGTGGACCAGAAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: TVASTHIAACNSCSRESNRGCSP*KWTRRS Trigger: ACTTCTTCTGGTCCACTTGCATGGAGAACAGCCCCG...GTTGGATTCCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| 3UTR-3UTR TCA 90 bp | CTCCTGTTCCAGGGAATCCAACACCCTCAGGCATGCAGGAAAACACCATTCAGTAAGGATGACACTGTGTaGCAAGTACGGGGCTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: LLFQGIQHPQACRKTPFSKDDTV*QVRGCS Trigger: AGAACAGCCCCGTACTTGTCACACAGTGTCATCCTT...ACTGAATGGTGTTTTCCTGCATGCCTGAGGGTGTTGGATTCCCTGGAACAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| 3UTR-3UTR CCA 90 bp | ACAAAAATAGGTTCTCTAGGCCATTCACATGCACATAAAACCCAGGAAGCTGCATGTTCTCCATGCAAGTaGACCAGAAGAAGTATTATC | + |
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Preference number: 2 (lower is better) Translates to: TKIGSLGHSHAHKTQEAACSPCK*TRRSII Trigger: GATAATACTTCTTCTGGTCCACTTGCATGGAGAACA...TGCAGCTTCCTGGGTTTTATGTGCATGTGAATGGCCTAGAGAACCTATTTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | GCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGTGTGGCGCCCATCGCTaGCAGCGACGTGGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: AHVQLPAPTLQLVTPVPGCGAHR*QRRGRC Trigger: GCAGCGGCCACGTCGCTGTCAGCGATGGGCGCCACA...CCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CCA 90 bp | AGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAACAGTTGCACAGGCATaGGCAGCCCGAGGTGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: RAHVQLPAPTLQLVTPVPTVAQA*AARGEG Trigger: ACCTTCACCTCGGGCTGCCCATGCCTGTGCAACTGT...TGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | ACTCCTGTTCCAGGGAATCCAACACCCTCAGGCATGCAGGAAAACACCATTCAGATGGGCAGCCCGAGGTaGAGGTGCCTTACCAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: TPVPGNPTPSGMQENTIQMGSPR*RCLTSG Trigger: ACCACTGGTAAGGCACCTTCACCTCGGGCTGCCCAT...CTGAATGGTGTTTTCCTGCATGCCTGAGGGTGTTGGATTCCCTGGAACAGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | AAAATAGGTTCTCTAGGCCATTCACATGCACATAAAACCCAGGAAGCTGCAAACCAGCGACGTGGCCGCTaGGTTCAGCCGGGCAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: KIGSLGHSHAHKTQEAANQRRGR*VQPGRP Trigger: TGGCCTGCCCGGCTGAACGCAGCGGCCACGTCGCTG...GTTTGCAGCTTCCTGGGTTTTATGTGCATGTGAATGGCCTAGAGAACCTATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| 3UTR CAA 72 bp | TTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATaGCAGCTTGTAACTCCTGTTCCAGGGAATCCAACA | + |
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Preference number: 4 (lower is better) Translates to: FHRAHVQLPAPT*QLVTPVPGNPT Trigger: TGTTGGATTCCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | CTCCTGTTCCAGGGAATCCAACACCCTCAGGCATGCAGGAAAACACCATTCAGTCTTGTTTCCAACAGTTaGACAGGCATGGGCAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LLFQGIQHPQACRKTPFSLVSNS*TGMGSP Trigger: CGGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAG...ACTGAATGGTGTTTTCCTGCATGCCTGAGGGTGTTGGATTCCCTGGAACAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | ACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGAATCCAACGTGAGTGCCAGGATCTaGCAACAGGGCACACACCTT | + |
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Preference number: 4 (lower is better) Translates to: TVASTHIAACNSCSRESNVSARI*QQGTHL Trigger: AAGGTGTGTGCCCTGTTGGCAGATCCTGGCACTCAC...GTTGGATTCCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CCA 90 bp | GCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGGTATTGCCTCTGGAATaGTGCCCACCAAACAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: AHVQLPAPTLQLVTPVPGVLPLE*CPPNKY Trigger: GTACTTGTTTGGTGGGCACCATTCCAGAGGCAATAC...CCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | GCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGTACTTCATTACTGTGTaGAGCTCTGTGATGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: AHVQLPAPTLQLVTPVPGYFITV*SSVMNQ Trigger: CTGGTTCATCACAGAGCTGCACACAGTAATGAAGTA...CCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CCA 90 bp | CTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCCCAAAGAGAAAAAGATaGTCTGAAGAGACTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: LPQGPRTVASTHIAACNSPKRKR*SEETGV Trigger: GACACCAGTCTCTTCAGACCATCTTTTTCTCTTTGG...GGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | TTCTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCGTCACCTTCAGTGTTaGTTTTCTTCCATCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: FFHRAHVQLPAPTLQLVTRHLQC*FSSIFQ Trigger: CTGGAAGATGGAAGAAAATCAACACTGAAGGTGACG...AGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | GCTGTTCTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTTCCATTCATTTTTACTaGTGCAGTAAGTCCAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: AVLPQGPRTVASTHIAACSIHFY*CSKSRH Trigger: ATGCCTGGACTTACTGCATCAGTAAAAATGAATGGA...ACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAGAACAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | TTCCAGGGAATCCAACACCCTCAGGCATGCAGGAAAACACCATTCAGTATACATACTGGTGTCAGTGAGTaGCAGGATCTGCCAACAGGG | + |
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Preference number: 4 (lower is better) Translates to: FQGIQHPQACRKTPFSIHTGVSE*QDLPTG Trigger: CCCTGTTGGCAGATCCTGGCACTCACTGACACCAGT...ATGTATACTGAATGGTGTTTTCCTGCATGCCTGAGGGTGTTGGATTCCCTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | CACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTTCCTCTTGGATGACTTaGATTCCAAAAAGATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: HRAHVQLPAPTLQLVTPVSSWMT*IPKRCF Trigger: GAAACATCTTTTTGGAATTCAAGTCATCCAAGAGGA...AACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | ACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGAATCCAACCTCGCACAAGCTGTGTaGCATAATCTTGGTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: TVASTHIAACNSCSRESNLAQAV*HNLGFS Trigger: TGAAAAACCAAGATTATGGCACACAGCTTGTGCGAG...GTTGGATTCCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | TTCTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTTCTAAAATATGGACATaGTCATTCCATCCTCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: FFHRAHVQLPAPTLQLVTSKIWT*SFHPLG Trigger: TCCAAGAGGATGGAATGATCATGTCCATATTTTAGA...AGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CCA 90 bp | ACCCTCAGGCATGCAGGAAAACACCATTCAGTATACATAAATAAATCGTTAAAACCCCAGACGAACATGTaGCGCCCATCGCTGACAGCG | + |
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Preference number: 4 (lower is better) Translates to: TLRHAGKHHSVYINKSLKPQTNM*RPSLTA Trigger: CGCTGTCAGCGATGGGCGCCACATGTTCGTCTGGGG...TTTTAACGATTTATTTATGTATACTGAATGGTGTTTTCCTGCATGCCTGAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CCA 90 bp | TTCTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTTCCACAGTTCTTCTCTaGGCAGATAAAAGTCATATA | + |
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Preference number: 4 (lower is better) Translates to: FFHRAHVQLPAPTLQLVTSTVLL*ADKSHI Trigger: TATATGACTTTTATCTGCCCAGAGAAGAACTGTGGA...AGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CCA 90 bp | TTCCAGGGAATCCAACACCCTCAGGCATGCAGGAAAACACCATTCAGTATACATTGTTTGTATTGCCTCTaGAATGGTGCCCACCAAACA | + |
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Preference number: 4 (lower is better) Translates to: FQGIQHPQACRKTPFSIHCLYCL*NGAHQT Trigger: TGTTTGGTGGGCACCATTCCAGAGGCAATACAAACA...ATGTATACTGAATGGTGTTTTCCTGCATGCCTGAGGGTGTTGGATTCCCTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR TCA 90 bp | GACACAAAAATAGGTTCTCTAGGCCATTCACATGCACATAAAACCCAGGAAGCTTTCCATCCTCTTGGATaGCTTGAATTCCAAAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: DTKIGSLGHSHAHKTQEAFHPLG*LEFQKD Trigger: ATCTTTTTGGAATTCAAGTCATCCAAGAGGATGGAA...AGCTTCCTGGGTTTTATGTGCATGTGAATGGCCTAGAGAACCTATTTTTGTGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR GCA 90 bp | CTGCAAACTACAACGATGCATATAATTATACAAAGGATGACACTGTGTGACAAGAGAACTTGTTTGTATTaGCTCTGGAATGGTGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: LQTTTMHIIIQRMTLCDKRTCLY*LWNGAH Trigger: GTGGGCACCATTCCAGAGGCAATACAAACAAGTTCT...CTTGTCACACAGTGTCATCCTTTGTATAATTATATGCATCGTTGTAGTTTGCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS TCA 90 bp | GATTACTCTTGTAGCCGCCCCAGACGAACATGTGGCGCCCATCGCTaGCAGCGACGTGGCCGCTGCGTTCAGCCGGGCAGGCCAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: DYSCSRPRRTCGAHR*QRRGRCVQPGRPAP Trigger: TGGAGCTGGCCTGCCCGGCTGAACGCAGCGGCCACGTCGCTGTCAGCGATGGGCGCCACATGTTCGTCTGGGGCGGCTACAAGAGTAATC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CCA 90 bp | CTGCCACCAAACACAAAGCCCTTGTTTCCAACAGTTGCACAGGCATaGGCAGCCCGAGGTGAAGGTGCCTTACCAGTGGTGATGGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: LPPNTKPLFPTVAQA*AARGEGALPVVMGW Trigger: CCAGCCCATCACCACTGGTAAGGCACCTTCACCTCGGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAGGGCTTTGTGTTTGGTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CAA 90 bp | GCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTCCAGGGACCCAGACGCCAAGTTaGTCCTTTGATGATGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: AHVQLPAPTLQLVTPVPGTQTPS*SFDDGG Trigger: CCCTCCATCATCAAAGGACAAACTTGGCGTCTGGGT...CCCTGGAACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CAA 90 bp | GCTGTTCTTCCACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTCCAAACACAAAGCCCTaGTTTCCAACAGTTGCACAG | + |
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Preference number: 5 (lower is better) Translates to: AVLPQGPRTVASTHIAACPNTKP*FPTVAQ Trigger: CTGTGCAACTGTTGGAAACAAGGGCTTTGTGTTTGG...ACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTGGAAGAACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS GCA 90 bp | GAAAAAGATGGTCTGAAGAGACTGGTGTCAGTGAGTGCCAGGATCTaGCAACAGGGCACACACCTTGTGGAATTAGTTCATTCCACTCCC | + |
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Preference number: 5 (lower is better) Translates to: EKDGLKRLVSVSARI*QQGTHLVELVHSTP Trigger: GGGAGTGGAATGAACTAATTCCACAAGGTGTGTGCCCTGTTGGCAGATCCTGGCACTCACTGACACCAGTCTCTTCAGACCATCTTTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CAA 90 bp | CACAGGGCCCACGTACAGTTGCCAGCACCCACATTGCAGCTTGTAACTCCTGTTACGTCACCTTCAGTGTaGATTTTCTTCCATCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: HRAHVQLPAPTLQLVTPVTSPSV*IFFHLP Trigger: TGGAAGATGGAAGAAAATCAACACTGAAGGTGACGT...AACAGGAGTTACAAGCTGCAATGTGGGTGCTGGCAACTGTACGTGGGCCCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CAA 90 bp | AAAATAGGTTCTCTAGGCCATTCACATGCACATAAAACCCAGGAAGCTGCAAACCCTTGTTTCCAACAGTaGCACAGGCATGGGCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: KIGSLGHSHAHKTQEAANPCFQQ*HRHGQP Trigger: GGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAGG...GTTTGCAGCTTCCTGGGTTTTATGTGCATGTGAATGGCCTAGAGAACCTATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CAA 90 bp | GACACAAAAATAGGTTCTCTAGGCCATTCACATGCACATAAAACCCAGGAAGCTCGCCAAGTTTGTCCTTaGATGATGGAGGGATTCCTT | + |
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Preference number: 5 (lower is better) Translates to: DTKIGSLGHSHAHKTQEARQVCP*MMEGFL Trigger: AAGGAATCCCTCCATCATCAAAGGACAAACTTGGCG...AGCTTCCTGGGTTTTATGTGCATGTGAATGGCCTAGAGAACCTATTTTTGTGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS-3UTR CAA 90 bp | AAAATAGGTTCTCTAGGCCATTCACATGCACATAAAACCCAGGAAGCTGCAAACTGTGAAGTAAGTGTTTaGGAAGGCAGCTCCACGAGT | + |
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Preference number: 5 (lower is better) Translates to: KIGSLGHSHAHKTQEAANCEVSV*EGSSTS Trigger: ACTCGTGGAGCTGCCTTCCAAAACACTTACTTCACA...GTTTGCAGCTTCCTGGGTTTTATGTGCATGTGAATGGCCTAGAGAACCTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CCA 72 bp | CGTGGCCGCTGCGTTCAGCCGGGCAGGCCAGCTCCATaGCCTCGTAGTTCTCGAAGGCCGGGCCCGGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: RGRCVQPGRPAP*PRSSRRPGPAD Trigger: ATCTGCCGGGCCCGGCCTTCGAGAACTACGAGGCCATGGAGCTGGCCTGCCCGGCTGAACGCAGCGGCCACG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS TCA 72 bp | TGTAGCCGCCCCAGACGAACATGTGGCGCCCATCGCTaGCAGCGACGTGGCCGCTGCGTTCAGCCGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: CSRPRRTCGAHR*QRRGRCVQPGR Trigger: CCTGCCCGGCTGAACGCAGCGGCCACGTCGCTGTCAGCGATGGGCGCCACATGTTCGTCTGGGGCGGCTACA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CCA 72 bp | CAGACGAACATGTGGCGCCCATCGCTGACAGCGACGTaGCCGCTGCGTTCAGCCGGGCAGGCCAGCTCCATG | + |
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Preference number: 6 (lower is better) Translates to: QTNMWRPSLTAT*PLRSAGQASSM Trigger: CATGGAGCTGGCCTGCCCGGCTGAACGCAGCGGCCACGTCGCTGTCAGCGATGGGCGCCACATGTTCGTCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CCA 72 bp | AACACAAAGCCCTTGTTTCCAACAGTTGCACAGGCATaGGCAGCCCGAGGTGAAGGTGCCTTACCAGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: NTKPLFPTVAQA*AARGEGALPVV Trigger: CACCACTGGTAAGGCACCTTCACCTCGGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAGGGCTTTGTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CAA 72 bp | ATCTGCCACCAAACACAAAGCCCTTGTTTCCAACAGTaGCACAGGCATGGGCAGCCCGAGGTGAAGGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: ICHQTQSPCFQQ*HRHGQPEVKVP Trigger: AGGCACCTTCACCTCGGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAGGGCTTTGTGTTTGGTGGCAGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CAA 90 bp | TCATTCATTCTAGCATCCCGGTATCTGCCACCAAACACAAAGCCCTaGTTTCCAACAGTTGCACAGGCATGGGCAGCCCGAGGTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: SFILASRYLPPNTKP*FPTVAQAWAARGEG Trigger: ACCTTCACCTCGGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAGGGCTTTGTGTTTGGTGGCAGATACCGGGATGCTAGAATGAATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS GCA 72 bp | GGTCTGAAGAGACTGGTGTCAGTGAGTGCCAGGATCTaGCAACAGGGCACACACCTTGTGGAATTAGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GLKRLVSVSARI*QQGTHLVELVH Trigger: ATGAACTAATTCCACAAGGTGTGTGCCCTGTTGGCAGATCCTGGCACTCACTGACACCAGTCTCTTCAGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS GCA 72 bp | AGAAAAAGATGGTCTGAAGAGACTGGTGTCAGTGAGTaGCAGGATCTGCCAACAGGGCACACACCTTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: RKRWSEETGVSE*QDLPTGHTPCG Trigger: TCCACAAGGTGTGTGCCCTGTTGGCAGATCCTGGCACTCACTGACACCAGTCTCTTCAGACCATCTTTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CCA 72 bp | TCGAATCCAGCATGTAGAACTTGTTTGTATTGCCTCTaGAATGGTGCCCACCAAACAAGTACAGCACCCGGT | + |
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Preference number: 6 (lower is better) Translates to: SNPACRTCLYCL*NGAHQTSTAPG Trigger: ACCGGGTGCTGTACTTGTTTGGTGGGCACCATTCCAGAGGCAATACAAACAAGTTCTACATGCTGGATTCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CAA 72 bp | ACTTGTTTTTATACACCCAGACGCCAAGTTTGTCCTTaGATGATGGAGGGATTCCTTGGCAGTCGATCCTTT | + |
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Preference number: 6 (lower is better) Translates to: TCFYTPRRQVCP*MMEGFLGSRSF Trigger: AAAGGATCGACTGCCAAGGAATCCCTCCATCATCAAAGGACAAACTTGGCGTCTGGGTGTATAAAAACAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CAA 90 bp | AAAATATTAACTTGTTTTTATACACCCAGACGCCAAGTTTGTCCTTaGATGATGGAGGGATTCCTTGGCAGTCGATCCTTTCCCACTGTA | + |
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Preference number: 6 (lower is better) Translates to: KILTCFYTPRRQVCP*MMEGFLGSRSFPTV Trigger: TACAGTGGGAAAGGATCGACTGCCAAGGAATCCCTCCATCATCAAAGGACAAACTTGGCGTCTGGGTGTATAAAAACAAGTTAATATTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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| CDS CCA 72 bp | TTCCAGTCTCCATGTTGTAGATCCACAGTTCTTCTCTaGGCAGATAAAAGTCATATAATCCTCTCACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: FQSPCCRSTVLL*ADKSHIILSLD Trigger: ATCAAGTGAGAGGATTATATGACTTTTATCTGCCCAGAGAAGAACTGTGGATCTACAACATGGAGACTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021362.5 |
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