Pregenerated sensors for KLHDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051890Ensembl transcript IDs: ENSMUST00000063445.13, ENSMUST00000173419.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTCCCCCTGGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTaGGCTCGCTCAGCACTTTGCACACTGAGCCACGTTGCCAGCGCC | + |
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Preference number: 1 (lower is better) Translates to: LSPWPMLVPGWSQVH*ARSALCTLSHVASA Trigger: GGCGCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CCA 90 bp | TTTATGGCGTTAGCTCTCTCCCCCTGGCCTATGCTGGTGCCAGGATaGAGCCAGGTCCACTGGGCTCGCTCAGCACTTTGCACACTGAGC | + |
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Preference number: 1 (lower is better) Translates to: FMALALSPWPMLVPG*SQVHWARSALCTLS Trigger: GCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGAGAGCTAACGCCATAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CCA 90 bp | TGTGAAGGTCAGAGAGTGATCTTTATGGCGTTAGCTCTCTCCCCCTaGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTGGGCTCGC | + |
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Preference number: 1 (lower is better) Translates to: CEGQRVIFMALALSP*PMLVPGWSQVHWAR Trigger: GCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGAGAGCTAACGCCATAAAGATCACTCTCTGACCTTCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR TCA 90 bp | ACCTGGACTTCATCTCCGGAGAACACTGGAAAGCCTTTCCTGCCTTaGTTTTGGTGGCATCTAGCTTGCAACCTGACGTTCTCTACAGAC | + |
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Preference number: 1 (lower is better) Translates to: TWTSSPENTGKPFLP*FWWHLACNLTFSTD Trigger: GTCTGTAGAGAACGTCAGGTTGCAAGCTAGATGCCACCAAAATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR TCA 90 bp | TATTTGATATTATTGTATTGTGTGCATCTTATGTTTGGGCACATGTaGAGGTCAGAGAGTGATCTTTATGGCGTTAGCTCTCTCCCCCTG | + |
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Preference number: 1 (lower is better) Translates to: YLILLYCVHLMFGHM*RSESDLYGVSSLPL Trigger: CAGGGGGAGAGAGCTAACGCCATAAAGATCACTCTCTGACCTTCACATGTGCCCAAACATAAGATGCACACAATACAATAATATCAAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR CCA 90 bp | TCTCCCCCTGGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTGGGCTCGCTCTGTTTCTGGATGGCTaGCCCCAAGAGCAGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: SPPGLCWCQDGARSTGLALFLDG*PQEQQE Trigger: CTCCTGCTGCTCTTGGGGCCAGCCATCCAGAAACAG...AGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR CCA 90 bp | GCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTGGGCTCGCTCAGCACTTTGACAGCTCAGGTGGGGTaGGGAAGGTTAGAGAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: AYAGARMEPGPLGSLSTLTAQVG*GRLESQ Trigger: TTGACTCTCTAACCTTCCCCACCCCACCTGAGCTGT...CAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CAA 90 bp | GACCTGGACTTCATCTCCGGAGAACACTGGAAAGCCTTTCCTGCCTaGATTTTGGTGGCATCTAGCTTGCAACCTGACGTTCTCTACAGA | + |
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Preference number: 2 (lower is better) Translates to: DLDFISGEHWKAFPA*ILVASSLQPDVLYR Trigger: TCTGTAGAGAACGTCAGGTTGCAAGCTAGATGCCACCAAAATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR CAA 90 bp | GACTTCATCTCCGGAGAACACTGGAAAGCCTTTCCTGCCTTGATTTaGGTGGCATCTAGCTTGCAACCTGACGTTCTCTACAGACTGACA | + |
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Preference number: 2 (lower is better) Translates to: DFISGEHWKAFPALI*VASSLQPDVLYRLT Trigger: TGTCAGTCTGTAGAGAACGTCAGGTTGCAAGCTAGATGCCACCAAAATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGCTACTGACTCTCGGCTGATTATTTTCTGTCTCTTCCTTTCGGATTCTTTGCTGTGTGCCATAACCTaGAGGCAGATCTGCCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: AATDSRLIIFCLFLSDSLLCAIT*RQICLC Trigger: ACAGAGGCAGATCTGCCTTCAGGTTATGGCACACAG...CAAAGAATCCGAAAGGAAGAGACAGAAAATAATCAGCCGAGAGTCAGTAGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTTAAGATCTGTTGCTACTGTACTTATTTCCAGGACGAACACATTCTATTACCAGCCTTCACTGCAGTaGAGGGTGGGACGTGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: KLRSVATVLISRTNTFYYQPSLQ*RVGRVV Trigger: GACCACACGTCCCACCCTCCACTGCAGTGAAGGCTG...GTAATAGAATGTGTTCGTCCTGGAAATAAGTACAGTAGCAACAGATCTTAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR TCA 90 bp | AATCATTACAGTGACCTGTATCCAAGAAAAGTAAGTTGTCTTTGCTCCCACCAATCTGTCTTATCTGCCTaGGGGAAACTCGGACCTGGA | + |
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Preference number: 2 (lower is better) Translates to: NHYSDLYPRKVSCLCSHQSVLSA*GKLGPG Trigger: TCCAGGTCCGAGTTTCCCTCAGGCAGATAAGACAGA...TTGGTGGGAGCAAAGACAACTTACTTTTCTTGGATACAGGTCACTGTAATGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTAATTAGCTGTAATGGAAGGAAGGCATATAATATGAAGAAAGGTGTCTCAATAACCTCCTGTTTCTaGATGGCTGGCCCCAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: KVISCNGRKAYNMKKGVSITSCF*MAGPKS Trigger: GCTCTTGGGGCCAGCCATCCAGAAACAGGAGGTTAT...TGAGACACCTTTCTTCATATTATATGCCTTCCTTCCATTACAGCTAATTACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR CCA 90 bp | AATAGGGCTGTGTTTGAAAGATCAATAAATCATTACAGTGACCTGTATCCAAGAATCTCCGGAGAACACTaGAAAGCCTTTCCTGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: NRAVFERSINHYSDLYPRISGEH*KAFPAL Trigger: CAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGAT...TCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR-3UTR CCA 90 bp | ATTAGCTGTAATGGAAGGAAGGCATATAATATGAAGAAAGGTGTCTCAAAATGGGAGAGTCAAAAATACTaGATTACCACCCCACATTAC | + |
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Preference number: 2 (lower is better) Translates to: ISCNGRKAYNMKKGVSKWESQKY*ITTPHY Trigger: GTAATGTGGGGTGGTAATCCAGTATTTTTGACTCTC...CCATTTTGAGACACCTTTCTTCATATTATATGCCTTCCTTCCATTACAGCTAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR GCA 90 bp | AATAGGGCTGTGTTTGAAAGATCAATAAATCATTACAGTGACCTGTATCCAAGAAAAGTAAGTTGTCTTTaGTCCCACCAAATACCATTA | + |
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Preference number: 2 (lower is better) Translates to: NRAVFERSINHYSDLYPRKVSCL*SHQIPL Trigger: TAATGGTATTTGGTGGGAGCAAAGACAACTTACTTT...TCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR CCA 72 bp | TTAGCTCTCTCCCCCTGGCCTATGCTGGTGCCAGGATaGAGCCAGGTCCACTGGGCTCGCTCAGCACTTTGC | + |
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Preference number: 3 (lower is better) Translates to: LALSPWPMLVPG*SQVHWARSALC Trigger: GCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGAGAGCTAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR GCA 72 bp | GGATGGAGCCAGGTCCACTGGGCTCGCTCAGCACTTTaGACACTGAGCCACGTTGCCAGCGCCACACTGAAA | + |
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Preference number: 3 (lower is better) Translates to: GWSQVHWARSAL*TLSHVASATLK Trigger: TTTCAGTGTGGCGCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CCA 72 bp | TGGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTaGGCTCGCTCAGCACTTTGCACACTGAGCCACGTT | + |
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Preference number: 3 (lower is better) Translates to: WPMLVPGWSQVH*ARSALCTLSHV Trigger: AACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR CAA 90 bp | GCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTGGGCTCGCTCAGCACTTTGAAGAGCAGCAGGAGGTaGTCACCGTGTGGACATCAC | + |
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Preference number: 3 (lower is better) Translates to: AYAGARMEPGPLGSLSTLKSSRR*SPCGHH Trigger: GTGATGTCCACACGGTGACAACCTCCTGCTGCTCTT...CAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CCA 72 bp | CAGAGAGTGATCTTTATGGCGTTAGCTCTCTCCCCCTaGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: QRVIFMALALSP*PMLVPGWSQVH Trigger: GTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGAGAGCTAACGCCATAAAGATCACTCTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR GCA 72 bp | AGCGGGACGGAGCCAGAACCACTAAACACGCTTCCCTaGTCAACAATGGGGACGAAAAGTCCTGATGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: SGTEPEPLNTLP*STMGTKSPDGA Trigger: AGCACCATCAGGACTTTTCGTCCCCATTGTTGAGCAGGGAAGCGTGTTTAGTGGTTCTGGCTCCGTCCCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR GCA 72 bp | TGTGTTTCCCACTGTGTCCTTAAATCCAGCCTTCACTaGAGTGGAGGGTGGGACGTGTGGTCTGATGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: CVSHCVLKSSLH*SGGWDVWSDAS Trigger: GCTTGCATCAGACCACACGTCCCACCCTCCACTGCAGTGAAGGCTGGATTTAAGGACACAGTGGGAAACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CCA 72 bp | TGCCTCTGTCTTATCTGCCTGAGGGAAACTCGGACCTaGACTTCATCTCCGGAGAACACTGGAAAGCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: CLCLICLRETRT*TSSPENTGKPF Trigger: GAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGAGTTTCCCTCAGGCAGATAAGACAGAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR-3UTR CAA 90 bp | ATCTGCCTGAGGGAAACTCGGACCTGGACTTCATCTCCGGAGAACACTGGAAAGTTGGTGGCATCTAGCTaGCAACCTGACGTTCTCTAC | + |
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Preference number: 3 (lower is better) Translates to: ICLRETRTWTSSPENTGKLVASS*QPDVLY Trigger: GTAGAGAACGTCAGGTTGCAAGCTAGATGCCACCAA...CTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGAGTTTCCCTCAGGCAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR CCA 72 bp | GGAAACTCGGACCTGGACTTCATCTCCGGAGAACACTaGAAAGCCTTTCCTGCCTTGATTTTGGTGGCATCT | + |
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Preference number: 3 (lower is better) Translates to: GNSDLDFISGEH*KAFPALILVAS Trigger: AGATGCCACCAAAATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGAGTTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR TCA 72 bp | CACGCTTCCCTGCTCAACAATGGGGACGAAAAGTCCTaGTGGTGCTATTTAAGGAGACACTTAGGTGATCTT | + |
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Preference number: 3 (lower is better) Translates to: HASLLNNGDEKS*WCYLRRHLGDL Trigger: AAGATCACCTAAGTGTCTCCTTAAATAGCACCATCAGGACTTTTCGTCCCCATTGTTGAGCAGGGAAGCGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR-3UTR CAA 90 bp | AATCATTACAGTGACCTGTATCCAAGAAAAGTAAGTTGTCTTTGCTCCCACCAAAAAGCCTTTCCTGCCTaGATTTTGGTGGCATCTAGC | + |
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Preference number: 3 (lower is better) Translates to: NHYSDLYPRKVSCLCSHQKAFPA*ILVASS Trigger: GCTAGATGCCACCAAAATCAAGGCAGGAAAGGCTTT...TTGGTGGGAGCAAAGACAACTTACTTTTCTTGGATACAGGTCACTGTAATGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR TCA 72 bp | TTATTGTATTGTGTGCATCTTATGTTTGGGCACATGTaGAGGTCAGAGAGTGATCTTTATGGCGTTAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LLYCVHLMFGHM*RSESDLYGVSS Trigger: AGAGCTAACGCCATAAAGATCACTCTCTGACCTTCACATGTGCCCAAACATAAGATGCACACAATACAATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR GCA 72 bp | TTTCAAGAAAAGTGTGCACACCAAGTTAAGATCTGTTaGTACTGTACTTATTTCCAGGACGAACACATTCTA | + |
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Preference number: 3 (lower is better) Translates to: FQEKCAHQVKIC*YCTYFQDEHIL Trigger: TAGAATGTGTTCGTCCTGGAAATAAGTACAGTAGCAACAGATCTTAACTTGGTGTGCACACTTTTCTTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR GCA 90 bp | CTTATCTGCCTGAGGGAAACTCGGACCTGGACTTCATCTCCGGAGAACACTGGACTGCGCAGTGGCCGCTaGGCTCCTCGGCCACGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LICLRETRTWTSSPENTGLRSGR*APRPRR Trigger: TCTGCGTGGCCGAGGAGCGCAGCGGCCACTGCGCAG...TCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGAGTTTCCCTCAGGCAGATAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| 3UTR CAA 72 bp | AGGATGGAGCCAGGTCCACTGGGCTCGCTCAGCACTTaGCACACTGAGCCACGTTGCCAGCGCCACACTGAA | + |
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Preference number: 4 (lower is better) Translates to: RMEPGPLGSLST*HTEPRCQRHTE Trigger: TTCAGTGTGGCGCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCTCCATCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR GCA 90 bp | TCTCCCCCTGGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTGGGCTCGCTACATGGACGTCATTGTaGCACCCCCAGAATATCTGT | + |
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Preference number: 4 (lower is better) Translates to: SPPGLCWCQDGARSTGLATWTSL*HPQNIC Trigger: ACAGATATTCTGGGGGTGGCACAATGACGTCCATGT...AGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR GCA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGGTGTCCGTCCACCACTaGGCAGTGGCCGCTGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRVSVHH*AVAAAL Trigger: GAGCGCAGCGGCCACTGCGCAGTGGTGGACGGACAC...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR CCA 90 bp | AGCCAGGTCCACTGGGCTCGCTCAGCACTTTGCACACTGAGCCACGTTGCCAGCGGCTCGTGGCTGTGGTaGAACTCCACCTTTAATTTC | + |
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Preference number: 4 (lower is better) Translates to: SQVHWARSALCTLSHVASGSWLW*NSTFNF Trigger: GAAATTAAAGGTGGAGTTCCACCACAGCCACGAGCC...GCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR GCA 90 bp | TCATTTTCTTTTCCCAGACAGGCTGTGTGCCATAACCTGAAGGCAGATCTGCCTGTGTCCGTCCACCACTaGGCAGTGGCCGCTGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: SFSFPRQAVCHNLKADLPVSVHH*AVAAAL Trigger: GAGCGCAGCGGCCACTGCGCAGTGGTGGACGGACAC...AGGCAGATCTGCCTTCAGGTTATGGCACACAGCCTGTCTGGGAAAAGAAAATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR CCA 90 bp | AGCCAGGTCCACTGGGCTCGCTCAGCACTTTGCACACTGAGCCACGTTGCCAGCGTAGGTCATTCATCCTaGTTTGCAAAACACGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: SQVHWARSALCTLSHVASVGHSS*FAKHVR Trigger: GCGGACGTGTTTTGCAAACCAGGATGAATGACCTAC...GCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR TCA 90 bp | AGCCAGGTCCACTGGGCTCGCTCAGCACTTTGCACACTGAGCCACGTTGCCAGCACATCAAAACATTCTTaGAGCTCACTGTGCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SQVHWARSALCTLSHVASTSKHS*SSLCLL Trigger: CAGGAGGCACAGTGAGCTTCAAGAATGTTTTGATGT...GCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR TCA 90 bp | TCTCCCCCTGGCCTATGCTGGTGCCAGGATGGAGCCAGGTCCACTGGGCTCGCTTATCTGTTCTTCCCATaGTGCATCATGAACATCAAA | + |
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Preference number: 4 (lower is better) Translates to: SPPGLCWCQDGARSTGLAYLFFP*CIMNIK Trigger: TTTGATGTTCATGATGCATCATGGGAAGAACAGATA...AGCGAGCCCAGTGGACCTGGCTCCATCCTGGCACCAGCATAGGCCAGGGGGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR GCA 90 bp | AGACAGGCTGTGTGCCATAACCTGAAGGCAGATCTGCCTCTGTCTTATCTGCCTAGAACTGCACATGAGTaGGCGGCTCGTGGCTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: RQAVCHNLKADLPLSYLPRTAHE*AARGCG Trigger: ACCACAGCCACGAGCCGCGCACTCATGTGCAGTTCT...AGGCAGATAAGACAGAGGCAGATCTGCCTTCAGGTTATGGCACACAGCCTGTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR CCA 90 bp | AACAGTATAACCTCCTGTTTCTGGATGGCTGGCCCCAAGAGCAGCAGGAGGTTGCGCGGCTCGTGGCTGTaGTGGAACTCCACCTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: NSITSCFWMAGPKSSRRLRGSWL*WNSTFN Trigger: ATTAAAGGTGGAGTTCCACCACAGCCACGAGCCGCG...CAACCTCCTGCTGCTCTTGGGGCCAGCCATCCAGAAACAGGAGGTTATACTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR CCA 90 bp | TCGGACCTGGACTTCATCTCCGGAGAACACTGGAAAGCCTTTCCTGCCTTGATTCGCGGCTCGTGGCTGTaGTGGAACTCCACCTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: SDLDFISGEHWKAFPALIRGSWL*WNSTFN Trigger: ATTAAAGGTGGAGTTCCACCACAGCCACGAGCCGCG...AATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR TCA 90 bp | AACAGTATAACCTCCTGTTTCTGGATGGCTGGCCCCAAGAGCAGCAGGAGGTTGAGTCAAGACATGACCTaGGCAGTGAATAGGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: NSITSCFWMAGPKSSRRLSQDMT*AVNRAV Trigger: CACAGCCCTATTCACTGCTCAGGTCATGTCTTGACT...CAACCTCCTGCTGCTCTTGGGGCCAGCCATCCAGAAACAGGAGGTTATACTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR GCA 90 bp | AGAATTGTAAAGGTCAGAAATAACTTCCATGGTAACAGTGAGGGGGTAATGTCACTGCGCAGTGGCCGCTaGGCTCCTCGGCCACGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RIVKVRNNFHGNSEGVMSLRSGR*APRPRR Trigger: TCTGCGTGGCCGAGGAGCGCAGCGGCCACTGCGCAG...TGACATTACCCCCTCACTGTTACCATGGAAGTTATTTCTGACCTTTACAATTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| CDS-3UTR CCA 90 bp | CAGATCTGCCTCTGTCTTATCTGCCTGAGGGAAACTCGGACCTGGACTTCATCTGGCTCGTGGCTGTGGTaGAACTCCACCTTTAATTTC | + |
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Preference number: 4 (lower is better) Translates to: QICLCLICLRETRTWTSSGSWLW*NSTFNF Trigger: GAAATTAAAGGTGGAGTTCCACCACAGCCACGAGCC...AGATGAAGTCCAGGTCCGAGTTTCCCTCAGGCAGATAAGACAGAGGCAGATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR CCA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGCTGTGTGCCATAACCTaGGCCTGGTGTACGGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRLCAIT*AWCTVN Trigger: ATTTACCGTACACCAGGCCCAGGTTATGGCACACAG...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
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| 3UTR CAA 72 bp | TCCGGAGAACACTGGAAAGCCTTTCCTGCCTTGATTTaGGTGGCATCTAGCTTGCAACCTGACGTTCTCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SGEHWKAFPALI*VASSLQPDVLY Trigger: GTAGAGAACGTCAGGTTGCAAGCTAGATGCCACCAAAATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR TCA 90 bp | ATCTGCCTGAGGGAAACTCGGACCTGGACTTCATCTCCGGAGAACACTGGAAAGCTCTTGTTCGTAAATTaGCAAAGTAAAGCCGGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: ICLRETRTWTSSPENTGKLLFVN*QSKAGC Trigger: GCAACCGGCTTTACTTTGTCAATTTACGAACAAGAG...CTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGAGTTTCCCTCAGGCAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR GCA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGTCCCCTTCCATTAGGTaGATTTTCCACAGCCCACTA | + |
|
Preference number: 4 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRSPSIR*IFHSPL Trigger: TAGTGGGCTGTGGAAAATGCACCTAATGGAAGGGGA...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR GCA 90 bp | CAGATCTGCCTCTGTCTTATCTGCCTGAGGGAAACTCGGACCTGGACTTCATCTTCATTCATCCTGGTTTaGAAAACACGTCCGCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: QICLCLICLRETRTWTSSSFILV*KTRPPK Trigger: CTTTGGCGGACGTGTTTTGCAAACCAGGATGAATGA...AGATGAAGTCCAGGTCCGAGTTTCCCTCAGGCAGATAAGACAGAGGCAGATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
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| CDS-3UTR CCA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGATCACGTGGTGTGGGTaGTTGTCCATCAAACTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRITWCG*LSIKLG Trigger: ACCAAGTTTGATGGACAACCACCCACACCACGTGAT...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CCA 90 bp | TCGGACCTGGACTTCATCTCCGGAGAACACTGGAAAGCCTTTCCTGCCTTGATTGTTTATCACGTGGTGTaGGTGGTTGTCCATCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: SDLDFISGEHWKAFPALIVYHVV*VVVHQT Trigger: AGTTTGATGGACAACCACCCACACCACGTGATAAAC...AATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAAGTCCAGGTCCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| 3UTR CAA 72 bp | TTCATCTCCGGAGAACACTGGAAAGCCTTTCCTGCCTaGATTTTGGTGGCATCTAGCTTGCAACCTGACGTT | + |
|
Preference number: 4 (lower is better) Translates to: FISGEHWKAFPA*ILVASSLQPDV Trigger: AACGTCAGGTTGCAAGCTAGATGCCACCAAAATCAAGGCAGGAAAGGCTTTCCAGTGTTCTCCGGAGATGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR CCA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGTCCACCTTTAATTTCTaGTTGAGACCACGTCCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRSTFNF*LRPRPR Trigger: ACGAGGACGTGGTCTCAACCAGAAATTAAAGGTGGA...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR TCA 90 bp | AAGTTAAGATCTGTTGCTACTGTACTTATTTCCAGGACGAACACATTCTATTACTCCCAGAACTGCACATaGGTGCGCGGCTCGTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KLRSVATVLISRTNTFYYSQNCT*VRGSWL Trigger: CAGCCACGAGCCGCGCACTCATGTGCAGTTCTGGGA...GTAATAGAATGTGTTCGTCCTGGAAATAAGTACAGTAGCAACAGATCTTAACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR TCA 90 bp | AATAGGGCTGTGTTTGAAAGATCAATAAATCATTACAGTGACCTGTATCCAAGATCCCAGAACTGCACATaGGTGCGCGGCTCGTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: NRAVFERSINHYSDLYPRSQNCT*VRGSWL Trigger: CAGCCACGAGCCGCGCACTCATGTGCAGTTCTGGGA...TCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR GCA 90 bp | AGAATTGTAAAGGTCAGAAATAACTTCCATGGTAACAGTGAGGGGGTAATGTCAAGAACTGCACATGAGTaGGCGGCTCGTGGCTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RIVKVRNNFHGNSEGVMSRTAHE*AARGCG Trigger: ACCACAGCCACGAGCCGCGCACTCATGTGCAGTTCT...TGACATTACCCCCTCACTGTTACCATGGAAGTTATTTCTGACCTTTACAATTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CCA 90 bp | TCATTTTCTTTTCCCAGACAGGCTGTGTGCCATAACCTGAAGGCAGATCTGCCTTCCACCTTTAATTTCTaGTTGAGACCACGTCCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: SFSFPRQAVCHNLKADLPSTFNF*LRPRPR Trigger: ACGAGGACGTGGTCTCAACCAGAAATTAAAGGTGGA...AGGCAGATCTGCCTTCAGGTTATGGCACACAGCCTGTCTGGGAAAAGAAAATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR CCA 90 bp | GCAGCTACTGACTCTCGGCTGATTATTTTCTGTCTCTTCCTTTCGGATTCTTTGATCACGTGGTGTGGGTaGTTGTCCATCAAACTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: AATDSRLIIFCLFLSDSLITWCG*LSIKLG Trigger: ACCAAGTTTGATGGACAACCACCCACACCACGTGAT...CAAAGAATCCGAAAGGAAGAGACAGAAAATAATCAGCCGAGAGTCAGTAGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR CCA 90 bp | GCAGCTACTGACTCTCGGCTGATTATTTTCTGTCTCTTCCTTTCGGATTCTTTGGTAGGTCATTCATCCTaGTTTGCAAAACACGTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: AATDSRLIIFCLFLSDSLVGHSS*FAKHVR Trigger: GCGGACGTGTTTTGCAAACCAGGATGAATGACCTAC...CAAAGAATCCGAAAGGAAGAGACAGAAAATAATCAGCCGAGAGTCAGTAGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR GCA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGAAAGTAAGTTGTCTTTaGTCCCACCAAATACCATTA | + |
|
Preference number: 4 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRKVSCL*SHQIPL Trigger: TAATGGTATTTGGTGGGAGCAAAGACAACTTACTTT...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CCA 90 bp | AGAATTGTAAAGGTCAGAAATAACTTCCATGGTAACAGTGAGGGGGTAATGTCAGGAAAGTTTATCACGTaGTGTGGGTGGTTGTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: RIVKVRNNFHGNSEGVMSGKFIT*CGWLSI Trigger: GATGGACAACCACCCACACCACGTGATAAACTTTCC...TGACATTACCCCCTCACTGTTACCATGGAAGTTATTTCTGACCTTTACAATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR TCA 90 bp | AGAATTGTAAAGGTCAGAAATAACTTCCATGGTAACAGTGAGGGGGTAATGTCACTCTTGTTCGTAAATTaGCAAAGTAAAGCCGGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: RIVKVRNNFHGNSEGVMSLLFVN*QSKAGC Trigger: GCAACCGGCTTTACTTTGTCAATTTACGAACAAGAG...TGACATTACCCCCTCACTGTTACCATGGAAGTTATTTCTGACCTTTACAATTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR GCA 90 bp | AATAGGGCTGTGTTTGAAAGATCAATAAATCATTACAGTGACCTGTATCCAAGAACATGGACGTCATTGTaGCACCCCCAGAATATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: NRAVFERSINHYSDLYPRTWTSL*HPQNIC Trigger: ACAGATATTCTGGGGGTGGCACAATGACGTCCATGT...TCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR TCA 90 bp | AATAGGGCTGTGTTTGAAAGATCAATAAATCATTACAGTGACCTGTATCCAAGAACATCAAAACATTCTTaGAGCTCACTGTGCCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: NRAVFERSINHYSDLYPRTSKHS*SSLCLL Trigger: CAGGAGGCACAGTGAGCTTCAAGAATGTTTTGATGT...TCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR GCA 90 bp | AAGGTAATTAGCTGTAATGGAAGGAAGGCATATAATATGAAGAAAGGTGTCTCATCATTCATCCTGGTTTaGAAAACACGTCCGCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: KVISCNGRKAYNMKKGVSSFILV*KTRPPK Trigger: CTTTGGCGGACGTGTTTTGCAAACCAGGATGAATGA...TGAGACACCTTTCTTCATATTATATGCCTTCCTTCCATTACAGCTAATTACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CCA 90 bp | AAGGTAATTAGCTGTAATGGAAGGAAGGCATATAATATGAAGAAAGGTGTCTCAGTTTATCACGTGGTGTaGGTGGTTGTCCATCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: KVISCNGRKAYNMKKGVSVYHVV*VVVHQT Trigger: AGTTTGATGGACAACCACCCACACCACGTGATAAAC...TGAGACACCTTTCTTCATATTATATGCCTTCCTTCCATTACAGCTAATTACCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CAA 90 bp | AGCCAGGTCCACTGGGCTCGCTCAGCACTTTGCACACTGAGCCACGTTGCCAGCAACATCAAAACATTCTaGAAGCTCACTGTGCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: SQVHWARSALCTLSHVASNIKTF*KLTVPP Trigger: AGGAGGCACAGTGAGCTTCAAGAATGTTTTGATGTT...GCTGGCAACGTGGCTCAGTGTGCAAAGTGCTGAGCGAGCCCAGTGGACCTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS TCA 90 bp | AACACGTCCGCCAAAGACGTAACCCTTATTTCCCAGAACTGCACATaGGTGCGCGGCTCGTGGCTGTGGTGGAACTCCACCTTTAATTTC | + |
|
Preference number: 5 (lower is better) Translates to: NTSAKDVTLISQNCT*VRGSWLWWNSTFNF Trigger: GAAATTAAAGGTGGAGTTCCACCACAGCCACGAGCCGCGCACTCATGTGCAGTTCTGGGAAATAAGGGTTACGTCTTTGGCGGACGTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS-3UTR CAA 90 bp | AACAGTATAACCTCCTGTTTCTGGATGGCTGGCCCCAAGAGCAGCAGGAGGTTGTGCCATGACCGGTGTTaGGGGCTTTCTCCATTAACA | + |
|
Preference number: 5 (lower is better) Translates to: NSITSCFWMAGPKSSRRLCHDRC*GLSPLT Trigger: TGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCA...CAACCTCCTGCTGCTCTTGGGGCCAGCCATCCAGAAACAGGAGGTTATACTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CAA 90 bp | AACAGTATAACCTCCTGTTTCTGGATGGCTGGCCCCAAGAGCAGCAGGAGGTTGGTCATTCATCCTGGTTaGCAAAACACGTCCGCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: NSITSCFWMAGPKSSRRLVIHPG*QNTSAK Trigger: TTTGGCGGACGTGTTTTGCAAACCAGGATGAATGAC...CAACCTCCTGCTGCTCTTGGGGCCAGCCATCCAGAAACAGGAGGTTATACTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CAA 90 bp | CAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCATAGCGGGACGGACCTTTAATTTCTGGTaGAGACCACGTCCTCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QHFKAGRKTNLHPVIAGRTFNFW*RPRPRL Trigger: AAGACGAGGACGTGGTCTCAACCAGAAATTAAAGGT...CCGTCCCGCTATGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CAA 90 bp | GCAGCTACTGACTCTCGGCTGATTATTTTCTGTCTCTTCCTTTCGGATTCTTTGTGCCATGACCGGTGTTaGGGGCTTTCTCCATTAACA | + |
|
Preference number: 5 (lower is better) Translates to: AATDSRLIIFCLFLSDSLCHDRC*GLSPLT Trigger: TGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCA...CAAAGAATCCGAAAGGAAGAGACAGAAAATAATCAGCCGAGAGTCAGTAGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR CAA 90 bp | AACCCACACCCCAACATTTCAAAGCTGGTAGAAAAACCAACCTCCACCCAGTCAAAAAGTAAGTTGTCTTaGCTCCCACCAAATACCATT | + |
|
Preference number: 5 (lower is better) Translates to: NPHPNISKLVEKPTSTQSKSKLS*LPPNTI Trigger: AATGGTATTTGGTGGGAGCAAAGACAACTTACTTTT...TGACTGGGTGGAGGTTGGTTTTTCTACCAGCTTTGAAATGTTGGGGTGTGGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CAA 90 bp | ATAAATCATTACAGTGACCTGTATCCAAGAAAAGTAAGTTGTCTTTGCTCCCACAACACATGGACGTCATaGTGCCACCCCCAGAATATC | + |
|
Preference number: 5 (lower is better) Translates to: INHYSDLYPRKVSCLCSHNTWTS*CHPQNI Trigger: GATATTCTGGGGGTGGCACAATGACGTCCATGTGTT...GTGGGAGCAAAGACAACTTACTTTTCTTGGATACAGGTCACTGTAATGATTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS GCA 90 bp | CCACCAAATAGGAAAAGCTTATCATCAGTTATTGCTGTTAAAGTGTaGCATGACCGGTGTTTGGGGCTTTCTCCATTAACAGAAATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: PPNRKSLSSVIAVKV*HDRCLGLSPLTEIL Trigger: AAGGATTTCTGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAACTGATGATAAGCTTTTCCTATTTGGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS-3UTR CAA 90 bp | AAGGTAATTAGCTGTAATGGAAGGAAGGCATATAATATGAAGAAAGGTGTCTCAAACACATGGACGTCATaGTGCCACCCCCAGAATATC | + |
|
Preference number: 5 (lower is better) Translates to: KVISCNGRKAYNMKKGVSNTWTS*CHPQNI Trigger: GATATTCTGGGGGTGGCACAATGACGTCCATGTGTT...TGAGACACCTTTCTTCATATTATATGCCTTCCTTCCATTACAGCTAATTACCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063445.13 |
||
| CDS-3UTR CAA 90 bp | ATAAATCATTACAGTGACCTGTATCCAAGAAAAGTAAGTTGTCTTTGCTCCCACGTCATTCATCCTGGTTaGCAAAACACGTCCGCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: INHYSDLYPRKVSCLCSHVIHPG*QNTSAK Trigger: TTTGGCGGACGTGTTTTGCAAACCAGGATGAATGAC...GTGGGAGCAAAGACAACTTACTTTTCTTGGATACAGGTCACTGTAATGATTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS-3UTR CAA 90 bp | AATAGGGCTGTGTTTGAAAGATCAATAAATCATTACAGTGACCTGTATCCAAGAAACATCAAAACATTCTaGAAGCTCACTGTGCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: NRAVFERSINHYSDLYPRNIKTF*KLTVPP Trigger: AGGAGGCACAGTGAGCTTCAAGAATGTTTTGATGTT...TCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173419.2 |
||
| CDS TCA 72 bp | CGTGGCTGTGGTGGAACTCCACCTTTAATTTCTGGTTaGGACCACGTCCTCGTCTTTGTGTCAAACACATGG | + |
|
Preference number: 6 (lower is better) Translates to: RGCGGTPPLISG*DHVLVFVSNTW Trigger: CCATGTGTTTGACACAAAGACGAGGACGTGGTCTCAACCAGAAATTAAAGGTGGAGTTCCACCACAGCCACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS CAA 72 bp | TCGTGGCTGTGGTGGAACTCCACCTTTAATTTCTGGTaGAGACCACGTCCTCGTCTTTGTGTCAAACACATG | + |
|
Preference number: 6 (lower is better) Translates to: SWLWWNSTFNFW*RPRPRLCVKHM Trigger: CATGTGTTTGACACAAAGACGAGGACGTGGTCTCAACCAGAAATTAAAGGTGGAGTTCCACCACAGCCACGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS CAA 90 bp | AGCTTATCATCAGTTATTGCTGTTAAAGTGTGCCATGACCGGTGTTaGGGGCTTTCTCCATTAACAGAAATCCTTCCAGACCAGACCCAG | + |
|
Preference number: 6 (lower is better) Translates to: SLSSVIAVKVCHDRC*GLSPLTEILPDQTQ Trigger: CTGGGTCTGGTCTGGAAGGATTTCTGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAACTGATGATAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS CAA 72 bp | TCAGTTATTGCTGTTAAAGTGTGCCATGACCGGTGTTaGGGGCTTTCTCCATTAACAGAAATCCTTCCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SVIAVKVCHDRC*GLSPLTEILPD Trigger: GTCTGGAAGGATTTCTGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS CAA 72 bp | TTAGTCCACCAAATAGGAAAAGCTTATCATCAGTTATaGCTGTTAAAGTGTGCCATGACCGGTGTTTGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: LVHQIGKAYHQL*LLKCAMTGVWG Trigger: GCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAACTGATGATAAGCTTTTCCTATTTGGTGGACTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS TCA 72 bp | TTTCCCAGGTGTAAGTTCCATCTCTTGTTCGTAAATTaGCAAAGTAAAGCCGGTTGCTGTATCCTTTGTCGT | + |
|
Preference number: 6 (lower is better) Translates to: FPRCKFHLLFVN*QSKAGCCILCR Trigger: ACGACAAAGGATACAGCAACCGGCTTTACTTTGTCAATTTACGAACAAGAGATGGAACTTACACCTGGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS GCA 72 bp | AGGAAAAGCTTATCATCAGTTATTGCTGTTAAAGTGTaGCATGACCGGTGTTTGGGGCTTTCTCCATTAACA | + |
|
Preference number: 6 (lower is better) Translates to: RKSLSSVIAVKV*HDRCLGLSPLT Trigger: TGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAACTGATGATAAGCTTTTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS CCA 72 bp | TCTGTCTTTATATACCCAGCAGGAAAGTTTATCACGTaGTGTGGGTGGTTGTCCATCAAACTTGGTGATTTT | + |
|
Preference number: 6 (lower is better) Translates to: SVFIYPAGKFIT*CGWLSIKLGDF Trigger: AAAATCACCAAGTTTGATGGACAACCACCCACACCACGTGATAAACTTTCCTGCTGGGTATATAAAGACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
||
| CDS CAA 90 bp | TATCTGCATTTAGTCCACCAAATAGGAAAAGCTTATCATCAGTTATaGCTGTTAAAGTGTGCCATGACCGGTGTTTGGGGCTTTCTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: YLHLVHQIGKAYHQL*LLKCAMTGVWGFLH Trigger: ATGGAGAAAGCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAACTGATGATAAGCTTTTCCTATTTGGTGGACTAAATGCAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063445.13 ENSMUST00000173419.2 |
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