RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLF7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025959

Ensembl transcript IDs: ENSMUST00000055001.10, ENSMUST00000114086.8, ENSMUST00000135075.2

Found 139 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCATCAGGAAGGCAGCAATGGACACTCAGGCTGGGCCCTCCGGTTaGAAATTAAGCATCACCATGTTTCCCGAAATGCAACCCAGACAC +
Preference number: 1 (lower is better)
Translates to: AIRKAAMDTQAGPSG*KLSITMFPEMQPRH
Trigger: GTGTCTGGGTTGCATTTCGGGAAACATGGTGATGCTTAATTTGCAACCGGAGGGCCCAGCCTGAGTGTCCATTGCTGCCTTCCTGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 90 bp ACCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTaGAGCAAGCAAGCACCATCATGGTATCTCAGTGCGCCCTGCTCC +
Preference number: 1 (lower is better)
Translates to: THQILRPIPTANKGL*SKQAPSWYLSAPCS
Trigger: GGAGCAGGGCGCACTGAGATACCATGATGGTGCTTGCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 90 bp ACACCCAGTCCTCTTGGGAGCAAAGGACACGTTGAGGTTATTTCTTaGAAAACCTGCTCCCTCCAGAGGCATCAAGCAACTGCCTCTGCA +
Preference number: 1 (lower is better)
Translates to: TPSPLGSKGHVEVIS*KTCSLQRHQATASA
Trigger: TGCAGAGGCAGTTGCTTGATGCCTCTGGAGGGAGCAGGTTTTTCAAGAAATAACCTCAACGTGTCCTTTGCTCCCAAGAGGACTGGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 90 bp CAACAAAGGACTCTGAAGCAAGCAAGCACCATCATGGTATCTCAGTaGGCCCTGCTCCAAGAGAGATCAGGAGCAGATCACAAAGACCTC +
Preference number: 1 (lower is better)
Translates to: QQRTLKQASTIMVSQ*ALLQERSGADHKDL
Trigger: GAGGTCTTTGTGATCTGCTCCTGATCTCTCTTGGAGCAGGGCGCACTGAGATACCATGATGGTGCTTGCTTGCTTCAGAGTCCTTTGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 90 bp CTAGAGAGTAAAAAGGAAAGTCATGGTGGCTGGGAAGTCATGTGTTaGGAGCAGGAAGGGGAGAGGGTTGTGGGTAGCTGGGAAGTATGT +
Preference number: 1 (lower is better)
Translates to: LESKKESHGGWEVMC*EQEGERVVGSWEVC
Trigger: ACATACTTCCCAGCTACCCACAACCCTCTCCCCTTCCTGCTCCCAACACATGACTTCCCAGCCACCATGACTTTCCTTTTTACTCTCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 90 bp GACACCATTCTAGACACCCAGTCCTCTTGGGAGCAAAGGACACGTTaGGGTTATTTCTTGAAAAACCTGCTCCCTCCAGAGGCATCAAGC +
Preference number: 1 (lower is better)
Translates to: DTILDTQSSWEQRTR*GYFLKNLLPPEASS
Trigger: GCTTGATGCCTCTGGAGGGAGCAGGTTTTTCAAGAAATAACCTCAACGTGTCCTTTGCTCCCAAGAGGACTGGGTGTCTAGAATGGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 90 bp ACTGTGAAGAGGATACTAGAGAGTAAAAAGGAAAGTCATGGTGGCTaGGAAGTCATGTGTTGGGAGCAGGAAGGGGAGAGGGTTGTGGGT +
Preference number: 1 (lower is better)
Translates to: TVKRILESKKESHGG*EVMCWEQEGERVVG
Trigger: ACCCACAACCCTCTCCCCTTCCTGCTCCCAACACATGACTTCCCAGCCACCATGACTTTCCTTTTTACTCTCTAGTATCCTCTTCACAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 90 bp GTGAAAATTAATCACACTGAGGTTTGCATTGGCAAACCATTTCTTTaGGCTTTCCCATGGGATGCAGGAGTGGAGGCTGCAGGCAGGACA +
Preference number: 1 (lower is better)
Translates to: VKINHTEVCIGKPFL*AFPWDAGVEAAGRT
Trigger: TGTCCTGCCTGCAGCCTCCACTCCTGCATCCCATGGGAAAGCCCAAAGAAATGGTTTGCCAATGCAAACCTCAGTGTGATTAATTTTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 90 bp TACCAAACATTTCAGACACCAAAGAGGACCAAGGGGCCTTTGTTCTaGCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGC +
Preference number: 1 (lower is better)
Translates to: YQTFQTPKRTKGPLF*HIQMKPQMARGTNS
Trigger: GCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCTTTGGTGTCTGAAATGTTTGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 90 bp AGGACAGCCTATGCCACATTTATGCCAGGCTTGCCCTTTCAAATCTaGGATCCCCTTGGAATGCTAGGAGGTAATGTCTTAAATTGTGAA +
Preference number: 1 (lower is better)
Translates to: RTAYATFMPGLPFQI*DPLGMLGGNVLNCE
Trigger: TTCACAATTTAAGACATTACCTCCTAGCATTCCAAGGGGATCCCAGATTTGAAAGGGCAAGCCTGGCATAAATGTGGCATAGGCTGTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 90 bp CGCCCTGCTCCAAGAGAGATCAGGAGCAGATCACAAAGACCTCACTaGTACAAAAGAGAAATTACCAAACATTTCAGACACCAAAGAGGA +
Preference number: 1 (lower is better)
Translates to: RPAPREIRSRSQRPH*YKREITKHFRHQRG
Trigger: TCCTCTTTGGTGTCTGAAATGTTTGGTAATTTCTCTTTTGTATCAGTGAGGTCTTTGTGATCTGCTCCTGATCTCTCTTGGAGCAGGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 90 bp TGTGGTGGTTGGAGGGGAGGCTCCAAAAACATTAAACATTTAGTTTaGCTTTGTGTTAGCAAGGAGATCTTGGCCCTAACAGGTGTATTT +
Preference number: 1 (lower is better)
Translates to: CGGWRGGSKNIKHLV*LCVSKEILALTGVF
Trigger: AAATACACCTGTTAGGGCCAAGATCTCCTTGCTAACACAAAGGCAAACTAAATGTTTAATGTTTTTGGAGCCTCCCCTCCAACCACCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 90 bp CCTAACAGGTGTATTTTTCCTCCCTGGGATGAAGCAGAAGTGAGATaGAAGAAATCAAATTGTCTGAGCTTGAGTGAGCAAATGCATGCT +
Preference number: 1 (lower is better)
Translates to: PNRCIFPPWDEAEVR*KKSNCLSLSEQMHA
Trigger: AGCATGCATTTGCTCACTCAAGCTCAGACAATTTGATTTCTTCCATCTCACTTCTGCTTCATCCCAGGGAGGAAAAATACACCTGTTAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 90 bp AGAGGAACCAAGAGAGGAGATTTAAGTGTTAAAAACAAGAAACCCTaGAGCTCAGGCATTAGTCATGAGACACCACATTTCATAGGAGCA +
Preference number: 1 (lower is better)
Translates to: RGTKRGDLSVKNKKP*SSGISHETPHFIGA
Trigger: TGCTCCTATGAAATGTGGTGTCTCATGACTAATGCCTGAGCTTCAGGGTTTCTTGTTTTTAACACTTAAATCTCCTCTCTTGGTTCCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 90 bp TCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTGGAAAATaGAGAACACCTGAAGAATACAGTACTATATTGAAAGATGCTCAT +
Preference number: 1 (lower is better)
Translates to: SLLLWIPVSRGLTGK*RTPEEYSTILKDAH
Trigger: ATGAGCATCTTTCAATATAGTACTGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 90 bp GAAGAATACAGTACTATATTGAAAGATGCTCATAAGAAAGTTAATTaGAGCTTAGCTATCCCCTTTCTGGGATCTGTTAGAGGAACCAAG +
Preference number: 1 (lower is better)
Translates to: EEYSTILKDAHKKVN*SLAIPFLGSVRGTK
Trigger: CTTGGTTCCTCTAACAGATCCCAGAAAGGGGATAGCTAAGCTGCAATTAACTTTCTTATGAGCATCTTTCAATATAGTACTGTATTCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp ATGCTCAAGAGGACAGCCTATGCCACATTTATGCCAGGCTTGCCCTTTCAAATCGCAGTTCTCCCCGCCTaGAGTCCAGCCCTCTGCCTC +
Preference number: 2 (lower is better)
Translates to: MLKRTAYATFMPGLPFQIAVLPA*SPALCL
Trigger: GAGGCAGAGGGCTGGACTTCAGGCGGGGAGAACTGC...GATTTGAAAGGGCAAGCCTGGCATAAATGTGGCATAGGCTGTCCTCTTGAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp CCATCTGATTGGCTGCTTCGAGAGCTAGACATCCAGGTGCCGAGAGAGTCCTGGCTTGCCGAGTTCACCTaGCTTCCTTCTTCCTTGTCT +
Preference number: 2 (lower is better)
Translates to: PSDWLLRELDIQVPRESWLAEFT*LPSSLS
Trigger: AGACAAGGAAGAAGGAAGCCAGGTGAACTCGGCAAG...CCAGGACTCTCTCGGCACCTGGATGTCTAGCTCTCGAAGCAGCCAATCAGATGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 90 bp TGCCATCAGGAAGGCAGCAATGGACACTCAGGCTGGGCCCTCCGGTaGCAAATTAAGCATCACCATGTTTCCCGAAATGCAACCCAGACA +
Preference number: 2 (lower is better)
Translates to: CHQEGSNGHSGWALR*QIKHHHVSRNATQT
Trigger: TGTCTGGGTTGCATTTCGGGAAACATGGTGATGCTTAATTTGCAACCGGAGGGCCCAGCCTGAGTGTCCATTGCTGCCTTCCTGATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp CAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACCATGATCTCAGAGGGTaGGTGAGGGAAGGGATGGGA +
Preference number: 2 (lower is better)
Translates to: QGAFVLPHSNETTDGERDHDLRG*VREGMG
Trigger: TCCCATCCCTTCCCTCACTCACCCTCTGAGATCATG...GTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp CAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACTCGGACATTGGCTGCTaGCATGGCAACTCTGGCCTT +
Preference number: 2 (lower is better)
Translates to: QGAFVLPHSNETTDGERDSDIGC*HGNSGL
Trigger: AAGGCCAGAGTTGCCATGGCAGCAGCCAATGTCCGA...GTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp CCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTGAAGCAAGCCGCCTTAAGGAGGGATaGGAGAACTCTGATGTCCCA +
Preference number: 2 (lower is better)
Translates to: PTKFSGQFPQPTKDSEASRLKEG*ENSDVP
Trigger: TGGGACATCAGAGTTCTCTCATCCCTCCTTAAGGCG...GCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp CAAAGCCATGCGCTTAGCACCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAACAAGTGGGTACCATaGTCTCAGAGGGTGAGTGAG +
Preference number: 2 (lower is better)
Translates to: QSHALSTHQILRPIPTANNKWVP*SQRVSE
Trigger: CTCACTCACCCTCTGAGATCATGGTACCCACTTGTT...GTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGGTGCTAAGCGCATGGCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp ACTCAGGCTGGGCCCTCCGGTTGCAAATTAAGCATCACCATGTTTCCCGAAATGAACTGCCTCTGCAGTTaGGGAAGAATGGAGGAGGAC +
Preference number: 2 (lower is better)
Translates to: TQAGPSGCKLSITMFPEMNCLCS*GRMEED
Trigger: GTCCTCCTCCATTCTTCCTCAACTGCAGAGGCAGTT...CATTTCGGGAAACATGGTGATGCTTAATTTGCAACCGGAGGGCCCAGCCTGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTGCGAGAACTTTCTTCTaGGAGGCAGTTCTCCCCGCC +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTARTFF*EAVLPA
Trigger: GGCGGGGAGAACTGCCTCGCAGAAGAAAGTTCTCGC...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTCATTGGCTGCTGCCATaGCAACTCTGGCCTTTGCGG +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTHWLLP*QLWPLR
Trigger: CCGCAAAGGCCAGAGTTGCCATGGCAGCAGCCAATG...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp CAAAGCCATGCGCTTAGCACCCACCAAATTCTCAGGCCAATTCCCACAGCCAACATTTCCTTCGGACATTaGCTGCTGCCATGGCAACTC +
Preference number: 2 (lower is better)
Translates to: QSHALSTHQILRPIPTANISFGH*LLPWQL
Trigger: GAGTTGCCATGGCAGCAGCCAATGTCCGAAGGAAAT...GTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGGTGCTAAGCGCATGGCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp CAAAGCCATGCGCTTAGCACCCACCAAATTCTCAGGCCAATTCCCACAGCCAACTGCGTGCATTCATGCTaGACACTGACTGCTACAGAC +
Preference number: 2 (lower is better)
Translates to: QSHALSTHQILRPIPTANCVHSC*TLTATD
Trigger: GTCTGTAGCAGTCAGTGTCCAGCATGAATGCACGCA...GTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGGTGCTAAGCGCATGGCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTGTAAGCCTCTTGGACTaGGGCCACCATGGAGACAGA +
Preference number: 2 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSVSLLD*GHHGDR
Trigger: TCTGTCTCCATGGTGGCCGCAGTCCAAGAGGCTTAC...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTCAACCGACAGTTCTGTaGGGAAGTCTGACGTACGGA +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTQPTVL*GSLTYG
Trigger: TCCGTACGTCAGACTTCCTCACAGAACTGTCGGTTG...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp GACACCAAAGAGGACCAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAAGCCCTCTGCCTCACTaGATTTCCTTCGGACATTGG +
Preference number: 2 (lower is better)
Translates to: DTKEDQGAFVLPHSNETTSPLPH*ISFGHW
Trigger: CCAATGTCCGAAGGAAATGCAGTGAGGCAGAGGGCT...TGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCTTTGGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTGTGTGTATGCACCCGTaGGCACACGTGTGTGTTTAC +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTVCMHP*AHVCVY
Trigger: GTAAACACACACGTGTGCGCACGGGTGCATACACAC...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp ACTCAGGCTGGGCCCTCCGGTTGCAAATTAAGCATCACCATGTTTCCCGAAATGCCTAGGAATCCATCCTaGTCATCAGACATGAGGTTG +
Preference number: 2 (lower is better)
Translates to: TQAGPSGCKLSITMFPEMPRNPS*SSDMRL
Trigger: CAACCTCATGTCTGATGAGCAGGATGGATTCCTAGG...CATTTCGGGAAACATGGTGATGCTTAATTTGCAACCGGAGGGCCCAGCCTGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACGGACTGCGGCCACCATaGAGACAGACATCCGTTTGC +
Preference number: 2 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYGLRPP*RQTSVC
Trigger: GCAAACGGATGTCTGTCTCCATGGTGGCCGCAGTCC...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAAGCACTGGCAAGAAGGTaGGGCTCAAGGGGTATACTG +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQALARR*GSRGIL
Trigger: CAGTATACCCCTTGAGCCTCACCTTCTTGCCAGTGC...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAATCCCATGGTATGCCCTaGTGGACTGGCTGCAGAATG +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQSHGMP*WTGCRM
Trigger: CATTCTGCAGCCAGTCCATCAGGGCATACCATGGGA...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAGGCCCATAGAGCTGTaGACGAGACAGGCCTGCTTG +
Preference number: 2 (lower is better)
Translates to: FSASSTTCVRNDILFVPSRPIEL*TRQACL
Trigger: CAAGCAGGCCTGTCTCGTGCACAGCTCTATGGGCCT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR-3UTR GCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAAAAAAGGGTAGAGGTGTaGATGGGGAGGTGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQKRVEV*MGRWQQ
Trigger: CTGCTGCCACCTCCCCATGCACACCTCTACCCTTTT...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 90 bp GATAGAATGCTCAAGAGGACAGCCTATGCCACATTTATGCCAGGCTaGCCCTTTCAAATCTGGGATCCCCTTGGAATGCTAGGAGGTAAT +
Preference number: 2 (lower is better)
Translates to: DRMLKRTAYATFMPG*PFQIWDPLGMLGGN
Trigger: ATTACCTCCTAGCATTCCAAGGGGATCCCAGATTTGAAAGGGCAAGCCTGGCATAAATGTGGCATAGGCTGTCCTCTTGAGCATTCTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTAGGGAAGGGATGGGATaGTGTTTTGTGAAGCCTCTA +
Preference number: 2 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSREGMG*CFVKPL
Trigger: TAGAGGCTTCACAAAACATCATCCCATCCCTTCCCT...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACAAAATCGTGGCAGCCATaGCTTAATGCCATCCCTGGC +
Preference number: 2 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTKSWQP*LNAIPG
Trigger: GCCAGGGATGGCATTAAGCCATGGCTGCCACGATTT...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAAGTGGTTGAAGGGCTTTaGGAAGGAAACTGGGACAGG +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQVVEGL*EGNWDR
Trigger: CCTGTCCCAGTTTCCTTCCCAAAGCCCTTCAACCAC...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTATCTCACTCCTGTTGTaGATACCTGTTTCCCGAGGA +
Preference number: 2 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSISLLL*IPVSRG
Trigger: TCCTCGGGAAACAGGTATCCACAACAGGAGTGAGAT...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 90 bp GAAAAACCTGCTCCCTCCAGAGGCATCAAGCAACTGCCTCTGCAGTaGAGGAAGAATGGAGGAGGACGTGTCATAAACCTATTTCTAAAA +
Preference number: 2 (lower is better)
Translates to: EKPAPSRGIKQLPLQ*RKNGGGRVINLFLK
Trigger: TTTTAGAAATAGGTTTATGACACGTCCTCCTCCATTCTTCCTCAACTGCAGAGGCAGTTGCTTGATGCCTCTGGAGGGAGCAGGTTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp CAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACTTGGATGTGTGTGTGTaGTATGCAAGTGAGCAATAT +
Preference number: 2 (lower is better)
Translates to: QGAFVLPHSNETTDGERDLDVCV*YASEQY
Trigger: ATATTGCTCACTTGCATATCACACACACACATCCAA...GTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACATTCATGCTGGACACTaGCTGCTACAGACTGGGAAG +
Preference number: 2 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYIHAGH*LLQTGK
Trigger: CTTCCCAGTCTGTAGCAGTCAGTGTCCAGCATGAAT...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTGTGCGTGTACATGTATaGACACAGAGGTTTGTAAGC +
Preference number: 2 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSVRVHV*TQRFVS
Trigger: GCTTACAAACCTCTGTGTGCATACATGTACACGCAC...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTATTGTCAGCAAGCAGTaGTCCAGAGCAGTTTCTAAG +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTIVSKQ*SRAVSK
Trigger: CTTAGAAACTGCTCTGGAGCACTGCTTGCTGACAAT...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACCTGCCATGGCAACTCTaGCCTTTGCGGTGTTTTGTT +
Preference number: 2 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYLPWQL*PLRCFV
Trigger: AACAAAACACCGCAAAGGCCAGAGTTGCCATGGCAG...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp TATCTCAGTGCGCCCTGCTCCAAGAGAGATCAGGAGCAGATCACAAAGACCTCATGCTTTGTTTTCCATTaGCAACATTGGGAAGTGATC +
Preference number: 2 (lower is better)
Translates to: YLSAPCSKRDQEQITKTSCFVFH*QHWEVI
Trigger: GATCACTTCCCAATGTTGCCAATGGAAAACAAAGCA...TGAGGTCTTTGTGATCTGCTCCTGATCTCTCTTGGAGCAGGGCGCACTGAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACGATGTCCCATCTGATTaGCTGCTTCGAGAGCTAGAC +
Preference number: 2 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYDVPSD*LLRELD
Trigger: GTCTAGCTCTCGAAGCAGCCAATCAGATGGGACATC...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTGCAGTTGAGGAAGAATaGAGGAGGACGTGTCATAAA +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTAVEEE*RRTCHK
Trigger: TTTATGACACGTCCTCCTCCATTCTTCCTCAACTGC...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAAGGCAACTCTGGCCTTTaGGGTGTTTTGTTCTTGTTG +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQGNSGL*GVLFLL
Trigger: CAACAAGAACAAAACACCGCAAAGGCCAGAGTTGCC...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAAAATACCCACCCCGCTTaGTTGCATAGGCCAGTTAAT +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQNTHPA*LHRPVN
Trigger: ATTAACTGGCCTATGCAAGCAAGCGGGGTGGGTATT...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAACAAGAGGACAGCCTATaGCACATTTATGCCAGGCTT +
Preference number: 2 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQQEDSL*HIYARL
Trigger: AAGCCTGGCATAAATGTGGCATAGGCTGTCCTCTTG...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp CAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACCCTTCATTCCCACAATaGCATTTTGAAGTATGCATT +
Preference number: 2 (lower is better)
Translates to: QGAFVLPHSNETTDGERDPSFPQ*HFEVCI
Trigger: AATGCATACTTCAAAATGCCATTGTGGGAATGAAGG...GTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTATTGCTTCTGGCAAATaGAGTATGTGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSIASGK*SMCVCV
Trigger: CACACACACACACATACTCCATTTGCCAGAAGCAAT...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTCAGACCCCAACCTACTaGACTATTTCCCTCCTTAGT +
Preference number: 2 (lower is better)
Translates to: FSASSTTCVRNDILFVPSQTPTY*TISLLS
Trigger: ACTAAGGAGGGAAATAGTGCAGTAGGTTGGGGTCTG...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR-3UTR GCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACACAAATGGGTTGTTCATaGTCCCTTCCTCTTTCCTTC +
Preference number: 2 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTQMGCS*SLPLSF
Trigger: GAAGGAAAGAGGAAGGGAGCATGAACAACCCATTTG...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACACTGACTGCTACAGACTaGGAAGAGAGAAACAAACCA +
Preference number: 2 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTLTATD*EERNKP
Trigger: TGGTTTGTTTCTCTCTTCCCAGTCTGTAGCAGTCAG...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACATTGCCCTTTCAAATCTaGGATCCCCTTGGAATGCTA +
Preference number: 2 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTLPFQI*DPLGML
Trigger: TAGCATTCCAAGGGGATCCCAGATTTGAAAGGGCAA...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAGAAGTAAAATGTATTaGCAGGCCCATAGAGCTGTG +
Preference number: 2 (lower is better)
Translates to: FSASSTTCVRNDILFVPSRSKMY*QAHRAV
Trigger: CACAGCTCTATGGGCCTGGCAATACATTTTACTTCT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR-3UTR GCA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTTTAAATATAGTTGAGTaGATGAGAGTGGATCTGTGT +
Preference number: 2 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTLNIVE*MRVDLC
Trigger: ACACAGATCCACTCTCATGCACTCAACTATATTTAA...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACGCAACCATAAGATGTTaGATTCTCTTATCACGTTGC +
Preference number: 2 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYATIRC*ILLSRC
Trigger: GCAACGTGATAAGAGAATCCAACATCTTATGGTTGC...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACACCCACAATGGCATTTTaGAGTATGCATTTAACAAGT +
Preference number: 2 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTPTMAF*SMHLTS
Trigger: ACTTGTTAAATGCATACTTCAAAATGCCATTGTGGG...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTTACTACATAAGAGAGTaGATCTTTTCACCCTTGCAA +
Preference number: 2 (lower is better)
Translates to: FSASSTTCVRNDILFVPSYYIRE*IFSPLQ
Trigger: TTGCAAGGGTGAAAAGATGCACTCTCTTATGTAGTA...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR-3UTR CCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACATACATAATTGCTTCTaGCAAATGGAGTATGTGTGT +
Preference number: 2 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYIHNCF*QMEYVC
Trigger: ACACACATACTCCATTTGCCAGAAGCAATTATGTAT...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR TCA 90 bp AGTTTTCATGAATTTATTTCAGCCAAGTCTTTCTTAAGTTCCACCTGGGCAATATGTTTCAAATATCCATaGCACCATTCTAGACACCCA +
Preference number: 2 (lower is better)
Translates to: SFHEFISAKSFLSSTWAICFKYP*HHSRHP
Trigger: TGGGTGTCTAGAATGGTGTCATGGATATTTGAAACA...TATTGCCCAGGTGGAACTTAAGAAAGACTTGGCTGAAATAAATTCATGAAAACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp AGTTCTCCCCGCCTGAAGTCCAGCCCTCTGCCTCACTaGATTTCCTTCGGACATTGGCTGCTGCCATGGCAA +
Preference number: 3 (lower is better)
Translates to: SSPRLKSSPLPH*ISFGHWLLPWQ
Trigger: TTGCCATGGCAGCAGCCAATGTCCGAAGGAAATGCAGTGAGGCAGAGGGCTGGACTTCAGGCGGGGAGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp GGAGTGGAGGCTGCAGGCAGGACAGTTCTGAATGCTTaGGTTAGCCAACCCTCCCCCTCCCCCATTTGTTTT +
Preference number: 3 (lower is better)
Translates to: GVEAAGRTVLNA*VSQPSPSPICF
Trigger: AAAACAAATGGGGGAGGGGGAGGGTTGGCTAACTCAAGCATTCAGAACTGTCCTGCCTGCAGCCTCCACTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp AGCAAGCAAGCACCATCATGGTATCTCAGTGCGCCCTaGTCCAAGAGAGATCAGGAGCAGATCACAAAGACC +
Preference number: 3 (lower is better)
Translates to: SKQAPSWYLSAP*SKRDQEQITKT
Trigger: GGTCTTTGTGATCTGCTCCTGATCTCTCTTGGAGCAGGGCGCACTGAGATACCATGATGGTGCTTGCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp CATTGGCAAACCATTTCTTTGGGCTTTCCCATGGGATaGAGGAGTGGAGGCTGCAGGCAGGACAGTTCTGAA +
Preference number: 3 (lower is better)
Translates to: HWQTISLGFPMG*RSGGCRQDSSE
Trigger: TTCAGAACTGTCCTGCCTGCAGCCTCCACTCCTGCATCCCATGGGAAAGCCCAAAGAAATGGTTTGCCAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp CCATCTGATTGGCTGCTTCGAGAGCTAGACATCCAGGTGCCGAGAGAGTCCTGGGAGACAGACATCCGTTaGCTTTGTTTTCCATTGGCA +
Preference number: 3 (lower is better)
Translates to: PSDWLLRELDIQVPRESWETDIR*LCFPLA
Trigger: TGCCAATGGAAAACAAAGCAAACGGATGTCTGTCTC...CCAGGACTCTCTCGGCACCTGGATGTCTAGCTCTCGAAGCAGCCAATCAGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp ACTCAGGCTGGGCCCTCCGGTTGCAAATTAAGCATCACCATGTTTCCCGAAATGAGGCCTCTGTTGATCTaGGGTGCTCTAGGTCACAAG +
Preference number: 3 (lower is better)
Translates to: TQAGPSGCKLSITMFPEMRPLLI*GALGHK
Trigger: CTTGTGACCTAGAGCACCCAAGATCAACAGAGGCCT...CATTTCGGGAAACATGGTGATGCTTAATTTGCAACCGGAGGGCCCAGCCTGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp GATGTCCCATCTGATTGGCTGCTTCGAGAGCTAGACATCCAGGTGCCGAGAGAGTGGCTTCCTTCTTCCTaGTCTTCTATCATCTGGCTA +
Preference number: 3 (lower is better)
Translates to: DVPSDWLLRELDIQVPREWLPSS*SSIIWL
Trigger: TAGCCAGATGATAGAAGACAAGGAAGAAGGAAGCCA...CTCTCTCGGCACCTGGATGTCTAGCTCTCGAAGCAGCCAATCAGATGGGACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp GACACCAAAGAGGACCAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAACCCACCCCGCTTGCTaGCATAGGCCAGTTAATGGT +
Preference number: 3 (lower is better)
Translates to: DTKEDQGAFVLPHSNETTTHPAC*HRPVNG
Trigger: ACCATTAACTGGCCTATGCAAGCAAGCGGGGTGGGT...TGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCTTTGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp CACGTTGCACTGAGAAGTTATGTAAGCCTCTTGGACTaGGGCCACCATGGAGACAGACATCCGTTTGCTTTG +
Preference number: 3 (lower is better)
Translates to: HVALRSYVSLLD*GHHGDRHPFAL
Trigger: CAAAGCAAACGGATGTCTGTCTCCATGGTGGCCGCAGTCCAAGAGGCTTACATAACTTCTCAGTGCAACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp CAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACTGGCAACTCTGGCCTTaGCGGTGTTTTGTTCTTGTT +
Preference number: 3 (lower is better)
Translates to: QGAFVLPHSNETTDGERDWQLWP*RCFVLV
Trigger: AACAAGAACAAAACACCGCAAAGGCCAGAGTTGCCA...GTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp ATGCTCAAGAGGACAGCCTATGCCACATTTATGCCAGGCTTGCCCTTTCAAATCCATTTCCTTCGGACATaGGCTGCTGCCATGGCAACT +
Preference number: 3 (lower is better)
Translates to: MLKRTAYATFMPGLPFQIHFLRT*AAAMAT
Trigger: AGTTGCCATGGCAGCAGCCAATGTCCGAAGGAAATG...GATTTGAAAGGGCAAGCCTGGCATAAATGTGGCATAGGCTGTCCTCTTGAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp TATCTCAGTGCGCCCTGCTCCAAGAGAGATCAGGAGCAGATCACAAAGACCTCAAATATGAGGCCTCTGTaGATCTTGGGTGCTCTAGGT +
Preference number: 3 (lower is better)
Translates to: YLSAPCSKRDQEQITKTSNMRPL*ILGALG
Trigger: ACCTAGAGCACCCAAGATCAACAGAGGCCTCATATT...TGAGGTCTTTGTGATCTGCTCCTGATCTCTCTTGGAGCAGGGCGCACTGAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp AGAGGACCAAGGGGCCTTTGTTCTGCCACATTCAAATaGAACCACAGATGGCGAGAGGGACAAACAGCAATG +
Preference number: 3 (lower is better)
Translates to: RGPRGLCSATFK*NHRWREGQTAM
Trigger: CATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp ATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTaGAGCAAGCAAGCACCATCATGGTATCTCAGTGCG +
Preference number: 3 (lower is better)
Translates to: ILRPIPTANKGL*SKQAPSWYLSA
Trigger: CGCACTGAGATACCATGATGGTGCTTGCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp CTAGACACCCAGTCCTCTTGGGAGCAAAGGACACGTTaGGGTTATTTCTTGAAAAACCTGCTCCCTCCAGAG +
Preference number: 3 (lower is better)
Translates to: LDTQSSWEQRTR*GYFLKNLLPPE
Trigger: CTCTGGAGGGAGCAGGTTTTTCAAGAAATAACCTCAACGTGTCCTTTGCTCCCAAGAGGACTGGGTGTCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp AGAGAAGTAAAATGTATTGCCAGGCCCATAGAGCTGTaGACGAGACAGGCCTGCTTGCTACTAGACCCAGAT +
Preference number: 3 (lower is better)
Translates to: REVKCIARPIEL*TRQACLLLDPD
Trigger: ATCTGGGTCTAGTAGCAAGCAGGCCTGTCTCGTGCACAGCTCTATGGGCCTGGCAATACATTTTACTTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR GCA 72 bp TTTCAGACACCAAAGAGGACCAAGGGGCCTTTGTTCTaGCACATTCAAATGAAACCACAGATGGCGAGAGGG +
Preference number: 3 (lower is better)
Translates to: FQTPKRTKGPLF*HIQMKPQMARG
Trigger: CCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCTTTGGTGTCTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 72 bp AATCACACTGAGGTTTGCATTGGCAAACCATTTCTTTaGGCTTTCCCATGGGATGCAGGAGTGGAGGCTGCA +
Preference number: 3 (lower is better)
Translates to: NHTEVCIGKPFL*AFPWDAGVEAA
Trigger: TGCAGCCTCCACTCCTGCATCCCATGGGAAAGCCCAAAGAAATGGTTTGCCAATGCAAACCTCAGTGTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp CCTCTTGGGAGCAAAGGACACGTTGAGGTTATTTCTTaGAAAACCTGCTCCCTCCAGAGGCATCAAGCAACT +
Preference number: 3 (lower is better)
Translates to: PLGSKGHVEVIS*KTCSLQRHQAT
Trigger: AGTTGCTTGATGCCTCTGGAGGGAGCAGGTTTTTCAAGAAATAACCTCAACGTGTCCTTTGCTCCCAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 72 bp GAGAAGTTATGTAAGCCTCTTGGACTGCGGCCACCATaGAGACAGACATCCGTTTGCTTTGTTTTCCATTGG +
Preference number: 3 (lower is better)
Translates to: EKLCKPLGLRPP*RQTSVCFVFHW
Trigger: CCAATGGAAAACAAAGCAAACGGATGTCTGTCTCCATGGTGGCCGCAGTCCAAGAGGCTTACATAACTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp CCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTGAAGCAAGCTGCAACCATAAGATGTaGGATTCTCTTATCACGTTG +
Preference number: 3 (lower is better)
Translates to: PTKFSGQFPQPTKDSEASCNHKM*DSLITL
Trigger: CAACGTGATAAGAGAATCCAACATCTTATGGTTGCA...GCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp ACTAGACCCAGATCATACATACAGACCCCAACCTACTaGACTATTTCCCTCCTTAGTCCCGTAGCTTCTAAG +
Preference number: 3 (lower is better)
Translates to: TRPRSYIQTPTY*TISLLSPVASK
Trigger: CTTAGAAGCTACGGGACTAAGGAGGGAAATAGTGCAGTAGGTTGGGGTCTGTATGTATGATCTGGGTCTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR-3UTR CAA 90 bp CCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTGAAGCAAGCTCCCACAATGGCATTTaGAAGTATGCATTTAACAAG +
Preference number: 3 (lower is better)
Translates to: PTKFSGQFPQPTKDSEASSHNGI*KYAFNK
Trigger: CTTGTTAAATGCATACTTCAAAATGCCATTGTGGGA...GCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACGACCAAACGCCACTTTaGTTTGTTAGACGCGTCTTG +
Preference number: 3 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYDQTPL*FVRRVL
Trigger: CAAGACGCGTCTAACAAACAAAAGTGGCGTTTGGTC...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTTTTGACATATTTCTGTaGTCCATCTCAAGTGCTCCC +
Preference number: 3 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTFDIFL*SISSAP
Trigger: GGGAGCACTTGAGATGGACAACAGAAATATGTCAAA...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CCA 72 bp TATGCCACATTTATGCCAGGCTTGCCCTTTCAAATCTaGGATCCCCTTGGAATGCTAGGAGGTAATGTCTTA +
Preference number: 3 (lower is better)
Translates to: YATFMPGLPFQI*DPLGMLGGNVL
Trigger: TAAGACATTACCTCCTAGCATTCCAAGGGGATCCCAGATTTGAAAGGGCAAGCCTGGCATAAATGTGGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTTTGCTTTGTTTTCCATaGGCAACATTGGGAAGTGAT +
Preference number: 3 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTLLCFP*ATLGSD
Trigger: ATCACTTCCCAATGTTGCCAATGGAAAACAAAGCAA...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp GTGACGACTTTGATCTCACTCCTGTTGTGGATACCTGTTTCCCGAGGACTTACTAGCAATATAAATCCCTaGGAATCAGCTTTCAGGGTA +
Preference number: 3 (lower is better)
Translates to: VTTLISLLLWIPVSRGLTSNINP*ESAFRV
Trigger: TACCCTGAAAGCTGATTCCAAGGGATTTATATTGCT...AGTAAGTCCTCGGGAAACAGGTATCCACAACAGGAGTGAGATCAAAGTCGTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAAACATTTATGCCAGGCTaGCCCTTTCAAATCTGGGAT +
Preference number: 3 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQTFMPG*PFQIWD
Trigger: ATCCCAGATTTGAAAGGGCAAGCCTGGCATAAATGT...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp CAAATGGGTTGTTCATGCTCCCTTCCTCTTTCCTTCTaGAGTAACACACGCAGAAGAGGAGATATAAGTAGT +
Preference number: 3 (lower is better)
Translates to: QMGCSCSLPLSF*SNTRRRGDISS
Trigger: ACTACTTATATCTCCTCTTCTGCGTGTGTTACTTCAGAAGGAAAGAGGAAGGGAGCATGAACAACCCATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR GCA 72 bp TCACTCAGAACCGTGAAAATTAATCACACTGAGGTTTaGATTGGCAAACCATTTCTTTGGGCTTTCCCATGG +
Preference number: 3 (lower is better)
Translates to: SLRTVKINHTEV*IGKPFLWAFPW
Trigger: CCATGGGAAAGCCCAAAGAAATGGTTTGCCAATGCAAACCTCAGTGTGATTAATTTTCACGGTTCTGAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp CTCATCAGACATGAGGTTGGCTCTCTTTTTACCCTGTTATCATCAGGCGATCAACTTAGTAATGACAATTaGAGAGTAAGAGCAGCTCCA +
Preference number: 3 (lower is better)
Translates to: LIRHEVGSLFTLLSSGDQLSNDN*RVRAAP
Trigger: TGGAGCTGCTCTTACTCTCAAATTGTCATTACTAAG...TTGATCGCCTGATGATAACAGGGTAAAAAGAGAGCCAACCTCATGTCTGATGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp AGTGAGATGGAAGAAATCAAATTGTCTGAGCTTGAGTaGGCAAATGCATGCTGGGAAGCAAAAAGGAAACAA +
Preference number: 3 (lower is better)
Translates to: SEMEEIKLSELE*ANACWEAKRKQ
Trigger: TTGTTTCCTTTTTGCTTCCCAGCATGCATTTGCTCACTCAAGCTCAGACAATTTGATTTCTTCCATCTCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR-3UTR CAA 90 bp AGTTTTCATGAATTTATTTCAGCCAAGTCTTTCTTAAGTTCCACCTGGGCAATACAAGTGCCAAGGATCTaGAAGGTTGCTGTCATATGT +
Preference number: 3 (lower is better)
Translates to: SFHEFISAKSFLSSTWAIQVPRI*KVAVIC
Trigger: ACATATGACAGCAACCTTCAAGATCCTTGGCACTTG...TATTGCCCAGGTGGAACTTAAGAAAGACTTGGCTGAAATAAATTCATGAAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR TCA 72 bp AAGAGAGGAGATTTAAGTGTTAAAAACAAGAAACCCTaGAGCTCAGGCATTAGTCATGAGACACCACATTTC +
Preference number: 3 (lower is better)
Translates to: KRGDLSVKNKKP*SSGISHETPHF
Trigger: GAAATGTGGTGTCTCATGACTAATGCCTGAGCTTCAGGGTTTCTTGTTTTTAACACTTAAATCTCCTCTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACAAGCTGGTGTCACGGCTaGCGCCGCCGCCACCCCTCC +
Preference number: 4 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTSWCHG*RRRHPS
Trigger: GGAGGGGTGGCGGCGGCGGCAGCCGTGACACCAGCT...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR TCA 90 bp CAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACCCACCTTCACCGAGCTaGGGGAAGCCTTCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: QGAFVLPHSNETTDGERDPPSPS*GKPSWP
Trigger: TGGCCAAGAAGGCTTCCCTCAGCTCGGTGAAGGTGG...GTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAGCTGGTGTCACGGCTaGCGCCGCCGCCACCCCTCC +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSSWCHG*RRRHPS
Trigger: GGAGGGGTGGCGGCGGCGGCAGCCGTGACACCAGCT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR CCA 90 bp CCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTGAAGCAAGCAGCTCTTCTCGCAGATaGTGGCTTCCACTGGGAGCA +
Preference number: 4 (lower is better)
Translates to: PTKFSGQFPQPTKDSEASSSSRR*WLPLGA
Trigger: TGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCT...GCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 72 bp GCTCCCTCCAGAGGCATCAAGCAACTGCCTCTGCAGTaGAGGAAGAATGGAGGAGGACGTGTCATAAACCTA +
Preference number: 4 (lower is better)
Translates to: APSRGIKQLPLQ*RKNGGGRVINL
Trigger: TAGGTTTATGACACGTCCTCCTCCATTCTTCCTCAACTGCAGAGGCAGTTGCTTGATGCCTCTGGAGGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTTCAAGGCATGTCTGCTaGCAGGTCTCCTCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSSRHVC*QVSSRD
Trigger: ATCCCTGGAGGAGACCTGGCAGCAGACATGCCTTGA...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp AGATTAGGCACTGGTGGCTACCCCTCTTATACCTCAGTAGCCTGTTTTCCTTCTCTGTCCACTCTTAACTaGTCCAGCTGGTGTCACGGC +
Preference number: 4 (lower is better)
Translates to: RLGTGGYPSYTSVACFPSLSTLN*SSWCHG
Trigger: GCCGTGACACCAGCTGGAGCAGTTAAGAGTGGACAG...AGAAGGAAAACAGGCTACTGAGGTATAAGAGGGGTAGCCACCAGTGCCTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR TCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTCCACCTTCACCGAGCTaGGGGAAGCCTTCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSPPSPS*GKPSWP
Trigger: TGGCCAAGAAGGCTTCCCTCAGCTCGGTGAAGGTGG...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR CCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTGTCACTGCGTTGAGCTaGGCCTGGTTGACGGCTGTG +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSVTALS*AWLTAV
Trigger: CACAGCCGTCAACCAGGCCCAGCTCAACGCAGTGAC...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR CAA 72 bp CTCAAGAGGACAGCCTATGCCACATTTATGCCAGGCTaGCCCTTTCAAATCTGGGATCCCCTTGGAATGCTA +
Preference number: 4 (lower is better)
Translates to: LKRTAYATFMPG*PFQIWDPLGML
Trigger: TAGCATTCCAAGGGGATCCCAGATTTGAAAGGGCAAGCCTGGCATAAATGTGGCATAGGCTGTCCTCTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 72 bp ACACACACCACCCTCATTATTCTGACGTGGGGTCCTTaGTATGGCAGTAGACAGAAGCTGGGGTCAAAGCAA +
Preference number: 4 (lower is better)
Translates to: THTTLIILTWGP*YGSRQKLGSKQ
Trigger: TTGCTTTGACCCCAGCTTCTGTCTACTGCCATACAAAGGACCCCACGTCAGAATAATGAGGGTGGTGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACAAACTCAAGGCATGTCTaGTGCCAGGTCTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTNSRHV*CQVSSR
Trigger: CCTGGAGGAGACCTGGCAGCAGACATGCCTTGAGTT...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 72 bp TCTTATCACGTTGCACTGAGAAGTTATGTAAGCCTCTaGGACTGCGGCCACCATGGAGACAGACATCCGTTT +
Preference number: 4 (lower is better)
Translates to: SYHVALRSYVSL*DCGHHGDRHPF
Trigger: AAACGGATGTCTGTCTCCATGGTGGCCGCAGTCCAAGAGGCTTACATAACTTCTCAGTGCAACGTGATAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 72 bp TCTAGACACCCAGTCCTCTTGGGAGCAAAGGACACGTaGAGGTTATTTCTTGAAAAACCTGCTCCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: SRHPVLLGAKDT*RLFLEKPAPSR
Trigger: TCTGGAGGGAGCAGGTTTTTCAAGAAATAACCTCAACGTGTCCTTTGCTCCCAAGAGGACTGGGTGTCTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTTCAAGGCATGTCTGCTaGCAGGTCTCCTCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSSRHVC*QVSSRD
Trigger: ATCCCTGGAGGAGACCTGGCAGCAGACATGCCTTGA...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAACTCAAGGCATGTCTaGTGCCAGGTCTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSNSRHV*CQVSSR
Trigger: CCTGGAGGAGACCTGGCAGCAGACATGCCTTGAGTT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTGGAAGCTCTCCTCAATaGATGGGGGAGGAGAAGCGT +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSGSSPQ*MGEEKR
Trigger: ACGCTTCTCCTCCCCCATGCATTGAGGAGAGCTTCC...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTCTGTCCACTCTTAACTaGTCCAGCTGGTGTCACGGC +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSLSTLN*SSWCHG
Trigger: GCCGTGACACCAGCTGGAGCAGTTAAGAGTGGACAG...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR GCA 90 bp CCCACCAAATTCTCAGGCCAATTCCCACAGCCAACAAAGGACTCTGAAGCAAGCACACTTAAAGGGCTTTaGACCTGTGTGTTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: PTKFSGQFPQPTKDSEASTLKGL*TCVFPV
Trigger: TACAGGAAACACACAGGTGCAAAGCCCTTTAAGTGT...GCTTGCTTCAGAGTCCTTTGTTGGCTGTGGGAATTGGCCTGAGAATTTGGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR CCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAGCTCTTCTCGCAGATaGTGGCTTCCACTGGGAGCA +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSSSSRR*WLPLGA
Trigger: TGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR GCA 90 bp GGATACCTGTTTCCCGAGGACTTACTGGAAAATGCAGAACACCTGAAGAATACAGAGCAAAATGTCCACTaGGGAGCTCTTCTCGCAGAT +
Preference number: 4 (lower is better)
Translates to: GYLFPEDLLENAEHLKNTEQNVH*GALLAD
Trigger: ATCTGCGAGAAGAGCTCCGCAGTGGACATTTTGCTC...TGTATTCTTCAGGTGTTCTGCATTTTCCAGTAAGTCCTCGGGAAACAGGTATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTGAGCAAAATGTCCACTaGGGAGCTCTTCTCGCAGAT +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSEQNVH*GALLAD
Trigger: ATCTGCGAGAAGAGCTCCGCAGTGGACATTTTGCTC...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR CCA 90 bp AGTTTTCATGAATTTATTTCAGCCAAGTCTTTCTTAAGTTCCACCTGGGCAATAGTCACTGCGTTGAGCTaGGCCTGGTTGACGGCTGTG +
Preference number: 4 (lower is better)
Translates to: SFHEFISAKSFLSSTWAIVTALS*AWLTAV
Trigger: CACAGCCGTCAACCAGGCCCAGCTCAACGCAGTGAC...TATTGCCCAGGTGGAACTTAAGAAAGACTTGGCTGAAATAAATTCATGAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR CCA 90 bp GACACCAAAGAGGACCAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAAAACACCTGTCGCAGTaGTTACACTTAAAGGGCTTT +
Preference number: 4 (lower is better)
Translates to: DTKEDQGAFVLPHSNETTKHLSQ*LHLKGF
Trigger: AAAGCCCTTTAAGTGTAACCACTGCGACAGGTGTTT...TGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCTTTGGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR CCA 90 bp TGCCACATTCAAATGAAACCACAGATGGCGAGAGGGACAAACAGCAATGATTACATATGGAGCGCAAGATaGTCAGACCTGGAGAAACAC +
Preference number: 4 (lower is better)
Translates to: CHIQMKPQMARGTNSNDYIWSAR*SDLEKH
Trigger: GTGTTTCTCCAGGTCTGACCATCTTGCGCTCCATAT...GTAATCATTGCTGTTTGTCCCTCTCGCCATCTGTGGTTTCATTTGAATGTGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
3UTR CAA 72 bp CAACCTTCCCTCATGACCACAGAGAGGGAGCCCTATTaGAAAAAGAGTATCTTGTTTGGGATATTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: QPSLMTTEREPY*KKSILFGIFAK
Trigger: CTTAGCAAATATCCCAAACAAGATACTCTTTTTCAAATAGGGCTCCCTCTCTGTGGTCATGAGGGAAGGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR GCA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTACACTTAAAGGGCTTTaGACCTGTGTGTTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: FSASSTTCVRNDILFVPSTLKGL*TCVFPV
Trigger: TACAGGAAACACACAGGTGCAAAGCCCTTTAAGTGT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
3UTR CAA 72 bp TTTGTTTTCCCTTGGATGCAAATAGACACAGATCATTaGGAAGCATATCCCAAATTCAAGTCCCTAAATACA +
Preference number: 4 (lower is better)
Translates to: FVFPWMQIDTDH*EAYPKFKSLNT
Trigger: TGTATTTAGGGACTTGAATTTGGGATATGCTTCCAAATGATCTGTGTCTATTTGCATCCAAGGGAAAACAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS CCA 90 bp CCCGAGAGAGCAAAATGTCCACTGCGGAGCTCTTCTCGCAGATGGTaGCTTCCACTGGGAGCAGCAAGGGGTCTAGGCGCCGGAAGCTCT +
Preference number: 5 (lower is better)
Translates to: PERAKCPLRSSSRRW*LPLGAARGLGAGSS
Trigger: AGAGCTTCCGGCGCCTAGACCCCTTGCTGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCTCCGCAGTGGACATTTTGCTCTCTCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055001.10
ENSMUST00000114086.8
ENSMUST00000135075.2
CDS CCA 90 bp TGTCCCGAGAGAGCAAAATGTCCACTGCGGAGCTCTTCTCGCAGATaGTGGCTTCCACTGGGAGCAGCAAGGGGTCTAGGCGCCGGAAGC +
Preference number: 5 (lower is better)
Translates to: CPERAKCPLRSSSRR*WLPLGAARGLGAGS
Trigger: GCTTCCGGCGCCTAGACCCCTTGCTGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCTCCGCAGTGGACATTTTGCTCTCTCGGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055001.10
ENSMUST00000114086.8
ENSMUST00000135075.2
CDS-3UTR CAA 90 bp CCATCTGATTGGCTGCTTCGAGAGCTAGACATCCAGGTGCCGAGAGAGTCCTGGAATGAGGTCACTGCGTaGAGCTGGGCCTGGTTGACG +
Preference number: 5 (lower is better)
Translates to: PSDWLLRELDIQVPRESWNEVTA*SWAWLT
Trigger: CGTCAACCAGGCCCAGCTCAACGCAGTGACCTCATT...CCAGGACTCTCTCGGCACCTGGATGTCTAGCTCTCGAAGCAGCCAATCAGATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR CAA 90 bp GACACCAAAGAGGACCAAGGGGCCTTTGTTCTGCCACATTCAAATGAAACCACAAGAGTCTGTGAGGTTTaGACCAGATGGCGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: DTKEDQGAFVLPHSNETTRVCEV*TRWRLS
Trigger: GCTCAGCCGCCATCTGGTCAAAACCTCACAGACTCT...TGTGGTTTCATTTGAATGTGGCAGAACAAAGGCCCCTTGGTCCTCTTTGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114086.8
CDS-3UTR CAA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAATGAGGTCACTGCGTaGAGCTGGGCCTGGTTGACG +
Preference number: 5 (lower is better)
Translates to: FSASSTTCVRNDILFVPSNEVTA*SWAWLT
Trigger: CGTCAACCAGGCCCAGCTCAACGCAGTGACCTCATT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS-3UTR CAA 90 bp TTCTCTGCCTCATCAACTACCTGTGTGAGGAATGACATCTTGTTTGTACCTAGTAGAGTCTGTGAGGTTTaGACCAGATGGCGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: FSASSTTCVRNDILFVPSRVCEV*TRWRLS
Trigger: GCTCAGCCGCCATCTGGTCAAAACCTCACAGACTCT...ACTAGGTACAAACAAGATGTCATTCCTCACACAGGTAGTTGATGAGGCAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055001.10
CDS CCA 72 bp GCAAAATGTCCACTGCGGAGCTCTTCTCGCAGATGGTaGCTTCCACTGGGAGCAGCAAGGGGTCTAGGCGCC +
Preference number: 6 (lower is better)
Translates to: AKCPLRSSSRRW*LPLGAARGLGA
Trigger: GGCGCCTAGACCCCTTGCTGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCTCCGCAGTGGACATTTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055001.10
ENSMUST00000114086.8
ENSMUST00000135075.2
CDS CCA 72 bp AGAGCAAAATGTCCACTGCGGAGCTCTTCTCGCAGATaGTGGCTTCCACTGGGAGCAGCAAGGGGTCTAGGC +
Preference number: 6 (lower is better)
Translates to: RAKCPLRSSSRR*WLPLGAARGLG
Trigger: GCCTAGACCCCTTGCTGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCTCCGCAGTGGACATTTTGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055001.10
ENSMUST00000114086.8
ENSMUST00000135075.2