Pregenerated sensors for KLF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003032Ensembl transcript IDs: ENSMUST00000107619.3, ENSMUST00000129250.2, ENSMUST00000132746.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGGTAGCGCTTGCCAGCTaGGCTCCTCCCCTCGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLVALAS*APPLVG Trigger: TCCCACGAGGGGAGGAGCCCAGCTGGCAAGCGCTAC...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| 3UTR-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATCTGAACTCTCTCTCCTaGCAGTGTGGGTCACATCCA | + |
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Preference number: 2 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDLNSLS*QCGSHP Trigger: TGGATGTGACCCACACTGCCAGGAGAGAGAGTTCAG...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| 3UTR-3UTR TCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATTATCCATTCACAAGCTaGCTTGCTGGGAACTTGACC | + |
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Preference number: 2 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDYPFTS*LAGNLT Trigger: GGTCAAGTTCCCAGCAAGTCAGCTTGTGAATGGATA...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| 3UTR-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGCACAAGCTGACTTGCTaGGAACTTGACCATGATTGT | + |
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Preference number: 2 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLHKLTC*ELDHDC Trigger: ACAATCATGGTCAAGTTCCCAGCAAGTCAGCTTGTG...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| 3UTR-3UTR GCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGATTCACAAGCTGACTTaGTGGGAACTTGACCATGAT | + |
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Preference number: 2 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLIHKLT*WELDHD Trigger: ATCATGGTCAAGTTCCCAGCAAGTCAGCTTGTGAAT...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR TCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATCCGCCACCTGGCGGCTaGGGCTGCTGTGGCGGAATG | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDPPPGG*GCCGGM Trigger: CATTCCGCCACAGCAGCCTCAGCCGCCAGGTGGCGG...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR TCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGGCCGGTGGCCGTTGCTaGGCTGGGGTCCAGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLAGGRC*AGVQRS Trigger: TGAGCGCTGGACCCCAGCTCAGCAACGGCCACCGGC...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGAAGCTGACGCCGAGGTaGTCACGGTGGCGGCCACCG | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLKLTPR*SRWRPP Trigger: CGGTGGCCGCCACCGTGACCACCTCGGCGTCAGCTT...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATCATCAGCCCGCCACCTaGCGGCTGAGGCTGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDHQPAT*RLRLLW Trigger: CCACAGCAGCCTCAGCCGCCAGGTGGCGGGCTGATG...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR TCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGCCCGGATCGGATAGCTaGAGCTGCAGGTGGAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLPGSDS*SCRWRA Trigger: CGCCCTCCACCTGCAGCTTCAGCTATCCGATCCGGG...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGGGCCGGACGCGAACGTaGAGAAGGACGGGAGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLGRTRT*RRTGAE Trigger: CTCTGCTCCCGTCCTTCTCCACGTTCGCGTCCGGCC...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGCACTCTCCAGGTCTGTaGCCACCGTCGCCGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLHSPGL*PPSPPG Trigger: ACCTGGCGGCGACGGTGGCCACAGACCTGGAGAGTG...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR TCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGGGTCCAGGAGGTCGTTaGACTCCTCGGTCTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLGPGGR*TPRSPS Trigger: GGAGGGAGACCGAGGAGTTCAACGACCTCCTGGACC...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATAGTCGGGGCACCTGCTaGACGCAGTGTCTTCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDSRGTC*TQCLLP Trigger: AGGGAGAAGACACTGCGTCCAGCAGGTGCCCCGACT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATACTCGCTGCCAGGGGTaGTCAGAGACGCCTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDTRCQG*SETPSA Trigger: TGCTGAAGGCGTCTCTGACCACCCCTGGCAGCGAGT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTGGCCGTTGCTGAGCTaGGGTCCAGCGCTCAAATGG | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLWPLLS*GPALKW Trigger: CCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCA...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGATGGGGATGGAATCCTaGGGGAAGAGGCAGGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLMGMES*GKRQAR Trigger: CCTGGCCTGCCTCTTCCCCCAGGATTCCATCCCCAT...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCCCCTCTTTGGCTTaGGCTCCTCTGGCAGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLFPSLA*APLAGR Trigger: CCTGCCTGCCAGAGGAGCCCAAGCCAAAGAGGGGAA...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR GCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGGTTAGTCGGGGCACCTaGTGGACGCAGTGTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLVSRGT*WTQCLL Trigger: GAGAAGACACTGCGTCCAGCAGGTGCCCCGACTAAC...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTGGCGGAATGTATACTaGGTCCAACTCCGGCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLWRNVY*VQLRPQ Trigger: CTGCGGCCGGAGTTGGACCCAGTATACATTCCGCCA...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATGGGGTGGCTGCCGTCTaGGCTTCCTTTGCTAACACT | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDGVAAV*ASFANT Trigger: AGTGTTAGCAAAGGAAGCCCAGACGGCAGCCACCCC...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATAGTCACAAGTGTGGGTaGCTGTTCTTTTCCGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDSHKCG*LFFSGA Trigger: GGCCCCGGAAAAGAACAGCCACCCACACTTGTGACT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATCAAGGTGGTCCGACCTaGAAAAGGCCCTGTCACACT | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDQGGPT*KRPCHT Trigger: AGTGTGACAGGGCCTTTTCCAGGTCGGACCACCTTG...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR TCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATGGAAGTCGCTTCATGTaGGAGAGTTCCTCACGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDGSRFM*ESSSRQ Trigger: TTGGCGTGAGGAACTCTCTCACATGAAGCGACTTCC...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR TCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATAGGAACCCGGTGGCATaGGCTCTTGATAATGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDRNPVA*ALDNGE Trigger: CTCTCCATTATCAAGAGCTCATGCCACCGGGTTCCT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATACTTGTGACTGCATCTaGTCTGGCAGGAAAGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDTCDCI*SGRKGG Trigger: CCCTCCTTTCCTGCCAGACCAGATGCAGTCACAAGT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGCAGGCAGGAACCCGGTaGCATGAGCTCTTGATAATG | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLQAGTR*HELLIM Trigger: CATTATCAAGAGCTCATGCCACCGGGTTCCTGCCTG...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR GCA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATGTGAGTTCGCAGGTGTaGCTTGAGATGAGAACTCTT | + |
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Preference number: 4 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDVSSQV*LEMRTL Trigger: AAGAGTTCTCATCTCAAGGCACACCTGCGAACTCAC...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR GCA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTCTTGGTATAGGTTTTaGCACAGCCTGCATAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLSWYRF*HSLHSH Trigger: GTGACTATGCAGGCTGTGGCAAAACCTATACCAAGA...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 90 bp | CAGCCCGCCACCTGGCGGCTGAGGCTGCTGTGGCGGAATGTATACTaGGTCCAACTCCGGCCGCAGGAGCTCAGCCACGAAGCCGCCCGA | + |
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Preference number: 5 (lower is better) Translates to: QPATWRLRLLWRNVY*VQLRPQELSHEAAR Trigger: TCGGGCGGCTTCGTGGCTGAGCTCCTGCGGCCGGAGTTGGACCCAGTATACATTCCGCCACAGCAGCCTCAGCCGCCAGGTGGCGGGCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 90 bp | GTGTTGGGCCGGTGGCCGTTGCTGAGCTGGGGTCCAGCGCTCAAATaGGCCTCTAGGGACCGGCTGACCGTGCAGGACGGGACCGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: VLGRWPLLSWGPALK*ASRDRLTVQDGTAS Trigger: AGAGGCGGTCCCGTCCTGCACGGTCAGCCGGTCCCTAGAGGCCCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCACCGGCCCAACAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 90 bp | GGCCGCTGCTCGCCGGGGAAGACGAGGATGAAGCTGACGCCGAGGTaGTCACGGTGGCGGCCACCGATTCCTGGTGGGTTAGCGAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: GRCSPGKTRMKLTPR*SRWRPPIPGGLASW Trigger: CCAACTCGCTAACCCACCAGGAATCGGTGGCCGCCACCGTGACCACCTCGGCGTCAGCTTCATCCTCGTCTTCCCCGGCGAGCAGCGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 |
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| CDS CCA 90 bp | CCCAGGGGGAAGTCGTGTGTGTTGGGCCGGTGGCCGTTGCTGAGCTaGGGTCCAGCGCTCAAATGGGCCTCTAGGGACCGGCTGACCGTG | + |
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Preference number: 5 (lower is better) Translates to: PRGKSCVLGRWPLLS*GPALKWASRDRLTV Trigger: CACGGTCAGCCGGTCCCTAGAGGCCCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCACCGGCCCAACACACACGACTTCCCCCTGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS GCA 90 bp | ACTCCTCGGTCTCCCTCCGGGCTAGGAGGGCCGGGTTGTTACTGCTaGAAGCTGCACCAGCTCCGCCACTCTCCAGGTCTGTGGCCACCG | + |
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Preference number: 5 (lower is better) Translates to: TPRSPSGLGGPGCYC*KLHQLRHSPGLWPP Trigger: CGGTGGCCACAGACCTGGAGAGTGGCGGAGCTGGTGCAGCTTGCAGCAGTAACAACCCGGCCCTCCTAGCCCGGAGGGAGACCGAGGAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS CCA 90 bp | CATGTGAGAGAGTTCCTCACGCCAACGGTTAGTCGGGGCACCTGCTaGACGCAGTGTCTTCTCCCTTCCCGCCGGGCCGGACGCGAACGT | + |
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Preference number: 5 (lower is better) Translates to: HVREFLTPTVSRGTC*TQCLLPSRRAGRER Trigger: ACGTTCGCGTCCGGCCCGGCGGGAAGGGAGAAGACACTGCGTCCAGCAGGTGCCCCGACTAACCGTTGGCGTGAGGAACTCTCTCACATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 |
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| CDS CCA 90 bp | CGGGCCACCGCTGTAGGGCGCCACTACCACGGGGTGGCTGCCGTCTaGGCTTCCTTTGCTAACACTGATGACCGAAGGGCTGCTGTACTC | + |
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Preference number: 5 (lower is better) Translates to: RATAVGRHYHGVAAV*ASFANTDDRRAAVL Trigger: GAGTACAGCAGCCCTTCGGTCATCAGTGTTAGCAAAGGAAGCCCAGACGGCAGCCACCCCGTGGTAGTGGCGCCCTACAGCGGTGGCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS GCA 90 bp | CTTCATGTGAGAGAGTTCCTCACGCCAACGGTTAGTCGGGGCACCTaGTGGACGCAGTGTCTTCTCCCTTCCCGCCGGGCCGGACGCGAA | + |
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Preference number: 5 (lower is better) Translates to: LHVREFLTPTVSRGT*WTQCLLPSRRAGRE Trigger: TTCGCGTCCGGCCCGGCGGGAAGGGAGAAGACACTGCGTCCAGCAGGTGCCCCGACTAACCGTTGGCGTGAGGAACTCTCTCACATGAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 |
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| CDS TCA 90 bp | CCCTCTTTGGCTTGGGCTCCTCTGGCAGGCAGGAACCCGGTGGCATaGGCTCTTGATAATGGAGAGAGGGGACTTGTGACTGCATCTGGT | + |
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Preference number: 5 (lower is better) Translates to: PSLAWAPLAGRNPVA*ALDNGERGLVTASG Trigger: ACCAGATGCAGTCACAAGTCCCCTCTCTCCATTATCAAGAGCTCATGCCACCGGGTTCCTGCCTGCCAGAGGAGCCCAAGCCAAAGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATAGCCCTCCACCTGTGTaGCTGGCAGCCACGCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDSPPPV*LAATPG Trigger: CCCGGGCGTGGCTGCCAGCAACACAGGTGGAGGGCT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATTTGGGCCGGTGGCCGTaGCTGAGCTGGGGTCCAGCG | + |
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Preference number: 5 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDLGRWP*LSWGPA Trigger: CGCTGGACCCCAGCTCAGCAACGGCCACCGGCCCAA...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATGGGAAGTCGTGTGTGTaGGGCCGGTGGCCGTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDGKSCV*GRWPLL Trigger: CAGCAACGGCCACCGGCCCAACACACACGACTTCCC...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTGATGTCCGCCAGGTaGAAGGGGGCCGTGGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLLMSAR*KGAVGG Trigger: ACCTCCCACGGCCCCCTTCAACCTGGCGGACATCAA...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATCTTCCCCTCTTTGGCTaGGGCTCCTCTGGCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDLPLFG*GSSGRQ Trigger: CTGCCTGCCAGAGGAGCCCAAGCCAAAGAGGGGAAG...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATAGGTCCAGGAGGTCGTaGAACTCCTCGGTCTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDRSRRS*NSSVSL Trigger: GAGGGAGACCGAGGAGTTCAACGACCTCCTGGACCT...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGGAGGGGCTCACGTCATaGATGTCCGCCAGGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLEGLTS*MSARLK Trigger: CTTCAACCTGGCGGACATCAATGACGTGAGCCCCTC...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGTTCTGTGATGGACGGGACCGCCTCTaGCTTAATCTTGGGGCACAT | + |
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Preference number: 5 (lower is better) Translates to: GIGMIEDPSSIRPHLFCDGRDRL*LNLGAH Trigger: ATGTGCCCCAAGATTAAGCAAGAGGCGGTCCCGTCC...ATCACAGAACAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS-3UTR CAA 90 bp | GTTGGATTTGGTATTGGAATGATAGAAGATCCATCCAGTATCAGACCCCATCTGCCGTCTGGGCTTCCTTaGCTAACACTGATGACCGAA | + |
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Preference number: 5 (lower is better) Translates to: VGFGIGMIEDPSSIRPHLPSGLP*LTLMTE Trigger: TTCGGTCATCAGTGTTAGCAAAGGAAGCCCAGACGG...CAGATGGGGTCTGATACTGGATGGATCTTCTATCATTCCAATACCAAATCCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS TCA 72 bp | CCACGCCCGGGTCACCCCCGGCCCGGATCGGATAGCTaGAGCTGCAGGTGGAGGGCGCGCTGGCAGGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: PRPGHPRPGSDS*SCRWRARWQGR Trigger: GCGGCCCTGCCAGCGCGCCCTCCACCTGCAGCTTCAGCTATCCGATCCGGGCCGGGGGTGACCCGGGCGTGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 |
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| CDS CCA 72 bp | TGCAAGCTGCACCAGCTCCGCCACTCTCCAGGTCTGTaGCCACCGTCGCCGCCAGGTCGTAGGGGCGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: CKLHQLRHSPGL*PPSPPGRRGGR Trigger: CCGGCCGCCCCTACGACCTGGCGGCGACGGTGGCCACAGACCTGGAGAGTGGCGGAGCTGGTGCAGCTTGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS GCA 72 bp | AGGGACCGGCTGACCGTGCAGGACGGGACCGCCTCTTaGTTAATCTTGGGGCACATGCGCGGCGGGCCACCG | + |
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Preference number: 6 (lower is better) Translates to: RDRLTVQDGTAS*LILGHMRGGPP Trigger: CGGTGGCCCGCCGCGCATGTGCCCCAAGATTAAGCAAGAGGCGGTCCCGTCCTGCACGGTCAGCCGGTCCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 72 bp | CGGTGGCCGTTGCTGAGCTGGGGTCCAGCGCTCAAATaGGCCTCTAGGGACCGGCTGACCGTGCAGGACGGG | + |
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Preference number: 6 (lower is better) Translates to: RWPLLSWGPALK*ASRDRLTVQDG Trigger: CCCGTCCTGCACGGTCAGCCGGTCCCTAGAGGCCCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCACCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS TCA 72 bp | GGGGGAAGTCGTGTGTGTTGGGCCGGTGGCCGTTGCTaGGCTGGGGTCCAGCGCTCAAATGGGCCTCTAGGG | + |
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Preference number: 6 (lower is better) Translates to: GGSRVCWAGGRC*AGVQRSNGPLG Trigger: CCCTAGAGGCCCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCACCGGCCCAACACACACGACTTCCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS GCA 72 bp | CGGTCTCCCTCCGGGCTAGGAGGGCCGGGTTGTTACTaGTGCAAGCTGCACCAGCTCCGCCACTCTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: RSPSGLGGPGCY*CKLHQLRHSPG Trigger: ACCTGGAGAGTGGCGGAGCTGGTGCAGCTTGCAGCAGTAACAACCCGGCCCTCCTAGCCCGGAGGGAGACCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS CCA 72 bp | GAGTTCCTCACGCCAACGGTTAGTCGGGGCACCTGCTaGACGCAGTGTCTTCTCCCTTCCCGCCGGGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: EFLTPTVSRGTC*TQCLLPSRRAG Trigger: TCCGGCCCGGCGGGAAGGGAGAAGACACTGCGTCCAGCAGGTGCCCCGACTAACCGTTGGCGTGAGGAACTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 |
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| CDS CAA 72 bp | CCCAGGGGGAAGTCGTGTGTGTTGGGCCGGTGGCCGTaGCTGAGCTGGGGTCCAGCGCTCAAATGGGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: PRGKSCVLGRWP*LSWGPALKWAS Trigger: AGAGGCCCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCACCGGCCCAACACACACGACTTCCCCCTGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS GCA 72 bp | TCTCCCTCCGGGCTAGGAGGGCCGGGTTGTTACTGCTaGAAGCTGCACCAGCTCCGCCACTCTCCAGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: SPSGLGGPGCYC*KLHQLRHSPGL Trigger: CAGACCTGGAGAGTGGCGGAGCTGGTGCAGCTTGCAGCAGTAACAACCCGGCCCTCCTAGCCCGGAGGGAGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS CCA 72 bp | AAGTCGTGTGTGTTGGGCCGGTGGCCGTTGCTGAGCTaGGGTCCAGCGCTCAAATGGGCCTCTAGGGACCGG | + |
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Preference number: 6 (lower is better) Translates to: KSCVLGRWPLLS*GPALKWASRDR Trigger: CCGGTCCCTAGAGGCCCATTTGAGCGCTGGACCCCAGCTCAGCAACGGCCACCGGCCCAACACACACGACTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CAA 72 bp | AACTCCTCGGTCTCCCTCCGGGCTAGGAGGGCCGGGTaGTTACTGCTGCAAGCTGCACCAGCTCCGCCACTC | + |
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Preference number: 6 (lower is better) Translates to: NSSVSLRARRAG*LLLQAAPAPPL Trigger: GAGTGGCGGAGCTGGTGCAGCTTGCAGCAGTAACAACCCGGCCCTCCTAGCCCGGAGGGAGACCGAGGAGTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS CCA 72 bp | ACCTGGCGGCTGAGGCTGCTGTGGCGGAATGTATACTaGGTCCAACTCCGGCCGCAGGAGCTCAGCCACGAA | + |
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Preference number: 6 (lower is better) Translates to: TWRLRLLWRNVY*VQLRPQELSHE Trigger: TTCGTGGCTGAGCTCCTGCGGCCGGAGTTGGACCCAGTATACATTCCGCCACAGCAGCCTCAGCCGCCAGGT 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 72 bp | GCTGTAGGGCGCCACTACCACGGGGTGGCTGCCGTCTaGGCTTCCTTTGCTAACACTGATGACCGAAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: AVGRHYHGVAAV*ASFANTDDRRA Trigger: AGCCCTTCGGTCATCAGTGTTAGCAAAGGAAGCCCAGACGGCAGCCACCCCGTGGTAGTGGCGCCCTACAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CAA 72 bp | GCCACTACCACGGGGTGGCTGCCGTCTGGGCTTCCTTaGCTAACACTGATGACCGAAGGGCTGCTGTACTCG | + |
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Preference number: 6 (lower is better) Translates to: ATTTGWLPSGLP*LTLMTEGLLYS Trigger: CGAGTACAGCAGCCCTTCGGTCATCAGTGTTAGCAAAGGAAGCCCAGACGGCAGCCACCCCGTGGTAGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 72 bp | GCCGAGGTGGTCACGGTGGCGGCCACCGATTCCTGGTaGGTTAGCGAGTTGGAAAGGATAAAGTCTAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: AEVVTVAATDSW*VSELERIKSRS Trigger: GGACCTAGACTTTATCCTTTCCAACTCGCTAACCCACCAGGAATCGGTGGCCGCCACCGTGACCACCTCGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS TCA 72 bp | GCTTGGGCTCCTCTGGCAGGCAGGAACCCGGTGGCATaGGCTCTTGATAATGGAGAGAGGGGACTTGTGACT | + |
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Preference number: 6 (lower is better) Translates to: AWAPLAGRNPVA*ALDNGERGLVT Trigger: AGTCACAAGTCCCCTCTCTCCATTATCAAGAGCTCATGCCACCGGGTTCCTGCCTGCCAGAGGAGCCCAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CCA 72 bp | CTTTGGCTTGGGCTCCTCTGGCAGGCAGGAACCCGGTaGCATGAGCTCTTGATAATGGAGAGAGGGGACTTG | + |
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Preference number: 6 (lower is better) Translates to: LWLGLLWQAGTR*HELLIMERGDL Trigger: CAAGTCCCCTCTCTCCATTATCAAGAGCTCATGCCACCGGGTTCCTGCCTGCCAGAGGAGCCCAAGCCAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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| CDS CAA 72 bp | GAGTTGGAAAGGATAAAGTCTAGGTCCAGGAGGTCGTaGAACTCCTCGGTCTCCCTCCGGGCTAGGAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: ELERIKSRSRRS*NSSVSLRARRA Trigger: GGCCCTCCTAGCCCGGAGGGAGACCGAGGAGTTCAACGACCTCCTGGACCTAGACTTTATCCTTTCCAACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS CAA 90 bp | TGGGTTAGCGAGTTGGAAAGGATAAAGTCTAGGTCCAGGAGGTCGTaGAACTCCTCGGTCTCCCTCCGGGCTAGGAGGGCCGGGTTGTTA | + |
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Preference number: 6 (lower is better) Translates to: WVSELERIKSRSRRS*NSSVSLRARRAGLL Trigger: TAACAACCCGGCCCTCCTAGCCCGGAGGGAGACCGAGGAGTTCAACGACCTCCTGGACCTAGACTTTATCCTTTCCAACTCGCTAACCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107619.3 ENSMUST00000129250.2 ENSMUST00000132746.2 |
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| CDS TCA 72 bp | TGGCATGAGCTCTTGATAATGGAGAGAGGGGACTTGTaGCTGCATCTGGTCTGGCAGGAAAGGAGGGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: WHELLIMERGDL*LHLVWQERRVV Trigger: AACTACCCTCCTTTCCTGCCAGACCAGATGCAGTCACAAGTCCCCTCTCTCCATTATCAAGAGCTCATGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107619.3 |
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