RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055148

Ensembl transcript IDs: ENSMUST00000067912.8

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTATAGCGAACCCACAGGCCTTGGCAGCTGGGGGCTGCAGCTGGTaGCCTTGGCCACAGGCACTGACTGCTCCCTGTCCCCTCAGGACC +
Preference number: 1 (lower is better)
Translates to: FIANPQALAAGGCSW*PWPQALTAPCPLRT
Trigger: GGTCCTGAGGGGACAGGGAGCAGTCAGTGCCTGTGGCCAAGGTCACCAGCTGCAGCCCCCAGCTGCCAAGGCCTGTGGGTTCGCTATAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
3UTR CAA 90 bp AGCGAACCCACAGGCCTTGGCAGCTGGGGGCTGCAGCTGGTGACCTaGGCCACAGGCACTGACTGCTCCCTGTCCCCTCAGGACCTACCC +
Preference number: 2 (lower is better)
Translates to: SEPTGLGSWGLQLVT*ATGTDCSLSPQDLP
Trigger: GGGTAGGTCCTGAGGGGACAGGGAGCAGTCAGTGCCTGTGGCCAAGGTCACCAGCTGCAGCCCCCAGCTGCCAAGGCCTGTGGGTTCGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
3UTR-3UTR CCA 90 bp ATGGCTCAAAGTAGCAGACTTAAAAATAACCTGTGCTCAATCCTAAAACACCATGGCCTTCAGTCACTGTaGGGGCCAGAACTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: MAQSSRLKNNLCSILKHHGLQSL*GPELVA
Trigger: TGCCACCAGTTCTGGCCCCCACAGTGACTGAAGGCC...ATGGTGTTTTAGGATTGAGCACAGGTTATTTTTAAGTCTGCTACTTTGAGCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
3UTR-3UTR CCA 90 bp ATGGCTCAAAGTAGCAGACTTAAAAATAACCTGTGCTCAATCCTAAAACACCATTGTGGGGGCCAGAACTaGTGGCAGAGTCATTTTCCT +
Preference number: 2 (lower is better)
Translates to: MAQSSRLKNNLCSILKHHCGGQN*WQSHFP
Trigger: AGGAAAATGACTCTGCCACCAGTTCTGGCCCCCACA...ATGGTGTTTTAGGATTGAGCACAGGTTATTTTTAAGTCTGCTACTTTGAGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
3UTR GCA 72 bp GGTCCAATAAATAGCAGTCTGTTTGCAAGGGGACCGTaGCCCGCGCGTGGAACCTGCCACAGTCGCGCATGG +
Preference number: 3 (lower is better)
Translates to: GPINSSLFARGP*PARGTCHSRAW
Trigger: CCATGCGCGACTGTGGCAGGTTCCACGCGCGGGGCACGGTCCCCTTGCAAACAGACTGCTATTTATTGGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR TCA 90 bp GGGGCCAGAACTGGTGGCAGAGTCATTTTCCTGTGGCCACACTTGTCCGGCTCTTGCAGAGCCGGCCCCTaGGGCGGGTCCAGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: GARTGGRVIFLWPHLSGSCRAGP*GGSRSG
Trigger: CCCCGACCTGGACCCGCCTCAGGGGCCGGCTCTGCA...AGAGCCGGACAAGTGTGGCCACAGGAAAATGACTCTGCCACCAGTTCTGGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR CCA 90 bp GTGACCTTGGCCACAGGCACTGACTGCTCCCTGTCCCCTCAGGACCTACCCTATGCTCTGTTCCCAGGCTaGCCGCGGGGATGCTGTAGG +
Preference number: 4 (lower is better)
Translates to: VTLATGTDCSLSPQDLPYALFPG*PRGCCR
Trigger: CCTACAGCATCCCCGCGGCCAGCCTGGGAACAGAGC...ATAGGGTAGGTCCTGAGGGGACAGGGAGCAGTCAGTGCCTGTGGCCAAGGTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR CCA 90 bp GACCTACCCTATCCCCAGCCACACCACTACCGTGATTCCTCCAAAGATCCAAAAACCGCGCGTGGCAGGTaGAGCCAAGCCCAGCGCCGC +
Preference number: 4 (lower is better)
Translates to: DLPYPQPHHYRDSSKDPKTARGR*SQAQRR
Trigger: GCGGCGCTGGGCTTGGCTCCACCTGCCACGCGCGGT...TTTTGGATCTTTGGAGGAATCACGGTAGTGGTGTGGCTGGGGATAGGGTAGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR CCA 90 bp CTGGTGACCTTGGCCACAGGCACTGACTGCTCCCTGTCCCCTCAGGACCTACCCAGGTCTTGCCGCAGTTaGTGTAGCTGCAAGTATGTG +
Preference number: 4 (lower is better)
Translates to: LVTLATGTDCSLSPQDLPRSCRS*CSCKYV
Trigger: CACATACTTGCAGCTACACCAACTGCGGCAAGACCT...GGGTAGGTCCTGAGGGGACAGGGAGCAGTCAGTGCCTGTGGCCAAGGTCACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR GCA 90 bp AACTGGTGGCAGAGTCATTTTCCTGTGGCCACACTTGTCCGGCTCTGTCCTAAGCGCAGTTGGTGTAGCTaGAAGTATGTGTGGCGGCGC +
Preference number: 4 (lower is better)
Translates to: NWWQSHFPVATLVRLCPKRSWCS*KYVWRR
Trigger: GCGCCGCCACACATACTTGCAGCTACACCAACTGCG...CTTAGGACAGAGCCGGACAAGTGTGGCCACAGGAAAATGACTCTGCCACCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR GCA 90 bp GGGGCCAGAACTGGTGGCAGAGTCATTTTCCTGTGGCCACACTTGTCCGGCTCTCGCATCCTTCCCAGTTaGAATGATAAGGCTTCTCAC +
Preference number: 4 (lower is better)
Translates to: GARTGGRVIFLWPHLSGSRILPS*NDKASH
Trigger: GTGAGAAGCCTTATCATTGCAACTGGGAAGGATGCG...AGAGCCGGACAAGTGTGGCCACAGGAAAATGACTCTGCCACCAGTTCTGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS-3UTR GCA 90 bp ATGGCTCAAAGTAGCAGACTTAAAAATAACCTGTGCTCAATCCTAAAACACCATTCTTGGTGTAGGTCTTaGCGCAGTTGGTGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: MAQSSRLKNNLCSILKHHSWCRS*RSWCSC
Trigger: GCAGCTACACCAACTGCGGCAAGACCTACACCAAGA...ATGGTGTTTTAGGATTGAGCACAGGTTATTTTTAAGTCTGCTACTTTGAGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
3UTR CAA 72 bp ATCGGTCATAGTCTTATATACAATATTATAAAAACGTaGGGGACAGTAAACTCAAAGGCATTTCTCACAAGG +
Preference number: 4 (lower is better)
Translates to: IGHSLIYNIIKT*GTVNSKAFLTR
Trigger: CCTTGTGAGAAATGCCTTTGAGTTTACTGTCCCCAACGTTTTTATAATATTGTATATAAGACTATGACCGAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CCA 90 bp CCTGAGGCGGGTCCAGGTCGGGGCGCAGCAGCTCTGTTCCCAGGCTaGCCGCGGGGATGCTGTAGGGCGGCGGAGCACCCGGCTCCGGGT +
Preference number: 5 (lower is better)
Translates to: PEAGPGRGAAALFPG*PRGCCRAAEHPAPG
Trigger: ACCCGGAGCCGGGTGCTCCGCCGCCCTACAGCATCCCCGCGGCCAGCCTGGGAACAGAGCTGCTGCGCCCCGACCTGGACCCGCCTCAGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS GCA 90 bp CCAGGTCGGGGCGCAGCAGCTCTGTTCCCAGGCTGGCCGCGGGGATaGTGTAGGGCGGCGGAGCACCCGGCTCCGGGTAGTAGAAGGCAG +
Preference number: 5 (lower is better)
Translates to: PGRGAAALFPGWPRG*CRAAEHPAPGSRRQ
Trigger: CTGCCTTCTACTACCCGGAGCCGGGTGCTCCGCCGCCCTACAGCATCCCCGCGGCCAGCCTGGGAACAGAGCTGCTGCGCCCCGACCTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CCA 90 bp TCATCCGTGCCGCCCGCCTCGGGTTCATTTCGCGGCCAGCGCTCCTaGAGGCCGCGCTCGCACGGGCTGGCGAAAGTGGCAAAGGACGGC +
Preference number: 5 (lower is better)
Translates to: SSVPPASGSFRGQRS*RPRSHGLAKVAKDG
Trigger: GCCGTCCTTTGCCACTTTCGCCAGCCCGTGCGAGCGCGGCCTCCAGGAGCGCTGGCCGCGAAATGAACCCGAGGCGGGCGGCACGGATGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CCA 72 bp GCCGGCGGGACCCCGCATGCATGCACCTGTCGCTCCTaGGGCGCCCTCGAGCTTCAGCCCGCGCGGTCCGTG +
Preference number: 6 (lower is better)
Translates to: AGGTPHACTCRS*GALELQPARSV
Trigger: CACGGACCGCGCGGGCTGAAGCTCGAGGGCGCCCCAGGAGCGACAGGTGCATGCATGCGGGGTCCCGCCGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CCA 72 bp GGTCCAGGTCGGGGCGCAGCAGCTCTGTTCCCAGGCTaGCCGCGGGGATGCTGTAGGGCGGCGGAGCACCCG +
Preference number: 6 (lower is better)
Translates to: GPGRGAAALFPG*PRGCCRAAEHP
Trigger: CGGGTGCTCCGCCGCCCTACAGCATCCCCGCGGCCAGCCTGGGAACAGAGCTGCTGCGCCCCGACCTGGACC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS GCA 72 bp GGCGCAGCAGCTCTGTTCCCAGGCTGGCCGCGGGGATaGTGTAGGGCGGCGGAGCACCCGGCTCCGGGTAGT +
Preference number: 6 (lower is better)
Translates to: GAAALFPGWPRG*CRAAEHPAPGS
Trigger: ACTACCCGGAGCCGGGTGCTCCGCCGCCCTACAGCATCCCCGCGGCCAGCCTGGGAACAGAGCTGCTGCGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CCA 72 bp CCGCCCGCCTCGGGTTCATTTCGCGGCCAGCGCTCCTaGAGGCCGCGCTCGCACGGGCTGGCGAAAGTGGCA +
Preference number: 6 (lower is better)
Translates to: PPASGSFRGQRS*RPRSHGLAKVA
Trigger: TGCCACTTTCGCCAGCCCGTGCGAGCGCGGCCTCCAGGAGCGCTGGCCGCGAAATGAACCCGAGGCGGGCGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS GCA 72 bp AGTTGGTGTAGCTGCAAGTATGTGTGGCGGCGCGCTTaGGGGGCCAGGAGCGGCGGCCGCGTTTGGGCTTGG +
Preference number: 6 (lower is better)
Translates to: SWCSCKYVWRRA*GARSGGRVWAW
Trigger: CCAAGCCCAAACGCGGCCGCCGCTCCTGGCCCCGCAAGCGCGCCGCCACACATACTTGCAGCTACACCAACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS GCA 72 bp AGCTCTTGGTGTAGGTCTTGCCGCAGTTGGTGTAGCTaGAAGTATGTGTGGCGGCGCGCTTGCGGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: SSWCRSCRSWCS*KYVWRRACGAR
Trigger: CCTGGCCCCGCAAGCGCGCCGCCACACATACTTGCAGCTACACCAACTGCGGCAAGACCTACACCAAGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CAA 90 bp GCGCCCAGACCGTCCAATCCCATGGAGAGGATGAAGTCCAACACGTaGTTTAGGTCCTCATCCGTGCCGCCCGCCTCGGGTTCATTTCGC +
Preference number: 6 (lower is better)
Translates to: APRPSNPMERMKSNT*FRSSSVPPASGSFR
Trigger: GCGAAATGAACCCGAGGCGGGCGGCACGGATGAGGACCTAAACAACGTGTTGGACTTCATCCTCTCCATGGGATTGGACGGTCTGGGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8
CDS CAA 72 bp CCGTCCAATCCCATGGAGAGGATGAAGTCCAACACGTaGTTTAGGTCCTCATCCGTGCCGCCCGCCTCGGGT +
Preference number: 6 (lower is better)
Translates to: PSNPMERMKSNT*FRSSSVPPASG
Trigger: ACCCGAGGCGGGCGGCACGGATGAGGACCTAAACAACGTGTTGGACTTCATCCTCTCCATGGGATTGGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067912.8