Pregenerated sensors for KLF16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035397Ensembl transcript IDs: ENSMUST00000038558.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCCCAGGTGACCCAAGTCCATTCTCAGTCCCCTTGCTGCTTTCTTaGGGTGGGCTGGAACTCCAGGACACAGGCTCTCCAGAGGACAGA | + |
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Preference number: 1 (lower is better) Translates to: PPGDPSPFSVPLLLS*GGLELQDTGSPEDR Trigger: TCTGTCCTCTGGAGAGCCTGTGTCCTGGAGTTCCAGCCCACCTCAAGAAAGCAGCAAGGGGACTGAGAATGGACTTGGGTCACCTGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR CCA 90 bp | ACCCAAGTCCATTCTCAGTCCCCTTGCTGCTTTCTTGAGGTGGGCTaGAACTCCAGGACACAGGCTCTCCAGAGGACAGATGTGTCCCTT | + |
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Preference number: 1 (lower is better) Translates to: TQVHSQSPCCFLEVG*NSRTQALQRTDVSL Trigger: AAGGGACACATCTGTCCTCTGGAGAGCCTGTGTCCTGGAGTTCCAGCCCACCTCAAGAAAGCAGCAAGGGGACTGAGAATGGACTTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR TCA 90 bp | AGAAATCCAGTCTGCAGTAGTAGAGGATCCTACTGTAGACTCTCCTaGGACCTTCCCCACTCACCCCTGAGGATGACGGCCACACAAGGG | + |
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Preference number: 1 (lower is better) Translates to: RNPVCSSRGSYCRLS*DLPHSPLRMTATQG Trigger: CCCTTGTGTGGCCGTCATCCTCAGGGGTGAGTGGGGAAGGTCTCAGGAGAGTCTACAGTAGGATCCTCTACTACTGCAGACTGGATTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR GCA 90 bp | TGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTaGCTGCCCTGCGTTCATCACCCTTCAATGGTTAGACCCAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: CPLQKEQINPLGPLS*LPCVHHPSMVRPKS Trigger: GGACTTGGGTCTAACCATTGAAGGGTGATGAACGCAGGGCAGGCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR TCA 90 bp | TCCTGGAGTCCAAGGCCACCCTCTGCAGACACCCGAGAGTGTGGAGCACATGACGCACCACACCCAAGGTaGGCGGGGATGTGGGGGATG | + |
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Preference number: 2 (lower is better) Translates to: SWSPRPPSADTRECGAHDAPHPR*AGMWGM Trigger: CATCCCCCACATCCCCGCTCACCTTGGGTGTGGTGC...GTCATGTGCTCCACACTCTCGGGTGTCTGCAGAGGGTGGCCTTGGACTCCAGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR TCA 90 bp | TTCCGCCAATGGCTTTCAGTGGAGTGGGGACAGGTAGGGGCCCATGGGAAGCCCTTTACAGACAGAACCTaGGGCCACCTCCCAGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: FRQWLSVEWGQVGAHGKPFTDRT*GHLPGP Trigger: GGGGCCTGGGAGGTGGCCTCAGGTTCTGTCTGTAAA...GGGCTTCCCATGGGCCCCTACCTGTCCCCACTCCACTGAAAGCCATTGGCGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR GCA 90 bp | TCCTGGAGTCCAAGGCCACCCTCTGCAGACACCCGAGAGTGTGGAGCACATGACTCTCAGTCCCCTTGCTaGTTTCTTGAGGTGGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: SWSPRPPSADTRECGAHDSQSPC*FLEVGW Trigger: CCAGCCCACCTCAAGAAAGCAGCAAGGGGACTGAGA...GTCATGTGCTCCACACTCTCGGGTGTCTGCAGAGGGTGGCCTTGGACTCCAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR TCA 90 bp | AGTGTGGAGCACATGACGGCAGACCAGAGCCCTGTATCCATAGCCCGATGGCCGTGGACACCTGAGATTTaGGTACCCATGGAAGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: SVEHMTADQSPVSIARWPWTPEI*VPMEGG Trigger: ACCCCCTTCCATGGGTACTCAAATCTCAGGTGTCCA...CGGCCATCGGGCTATGGATACAGGGCTCTGGTCTGCCGTCATGTGCTCCACACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR GCA 90 bp | TCCTGGAGTCCAAGGCCACCCTCTGCAGACACCCGAGAGTGTGGAGCACATGACCATTCTCAGTCCCCTTaGTGCTTTCTTGAGGTGGGC | + |
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Preference number: 2 (lower is better) Translates to: SWSPRPPSADTRECGAHDHSQSP*CFLEVG Trigger: GCCCACCTCAAGAAAGCAGCAAGGGGACTGAGAATG...GTCATGTGCTCCACACTCTCGGGTGTCTGCAGAGGGTGGCCTTGGACTCCAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CCA 90 bp | AGTGTGGAGCACATGACGGCAGACCAGAGCCCTGTATCCATAGCCCGATGGCCGGCTGAAGACAAGGAGTaGGGTAGGCTTCATGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: SVEHMTADQSPVSIARWPAEDKE*GRLHAQ Trigger: TTGGGCATGAAGCCTACCCCACTCCTTGTCTTCAGC...CGGCCATCGGGCTATGGATACAGGGCTCTGGTCTGCCGTCATGTGCTCCACACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CCA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTGCCCCTGGGGCTGGGAGTaGGGGGCCCTTATTGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: ERCPLQKEQINPLGPLSCPWGWE*GALIEG Trigger: GCCCTCAATAAGGGCCCCCCACTCCCAGCCCCAGGG...GCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR CAA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTaGTCCTGCCTGCCCTGCGTTCATCACCCTTCAATGGTTAGACCC | + |
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Preference number: 2 (lower is better) Translates to: ERCPLQKEQINPLGP*SCLPCVHHPSMVRP Trigger: GGGTCTAACCATTGAAGGGTGATGAACGCAGGGCAGGCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CCA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTGCAGCCCCAGTCACCTATaGCTCTGTGTACCTGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: ERCPLQKEQINPLGPLSCSPSHL*LCVPVS Trigger: GGACACAGGTACACAGAGCCATAGGTGACTGGGGCT...GCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR GCA 90 bp | GCCAACACAGGGCAGCTCAACTTTCTCTGTGTCCCCAATTTCTTGGTGTGTGTGAATTTCTTTCCCATCTaGCCAGCACCACACCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: ANTGQLNFLCVPNFLVCVNFFPI*PAPHPR Trigger: CCTTGGGTGTGGTGCTGGGCAGATGGGAAAGAAATT...CACACACACCAAGAAATTGGGGACACAGAGAAAGTTGAGCTGCCCTGTGTTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CCA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTGCTTTCTTGAGGTGGGCTaGAACTCCAGGACACAGGCT | + |
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Preference number: 2 (lower is better) Translates to: ERCPLQKEQINPLGPLSCFLEVG*NSRTQA Trigger: AGCCTGTGTCCTGGAGTTCCAGCCCACCTCAAGAAA...GCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CCA 90 bp | AGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAAAAGAAGATTTGAGTACCCATaGAAGGGGGTCAGCCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: RKDRRPAGAGMKQDTSKRRFEYP*KGVSQA Trigger: AGCCTGGCTGACCCCCTTCCATGGGTACTCAAATCT...TCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CCA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTGCGTGTCCCCAATTTCTTaGTGTGTGTGTGGCAATCCC | + |
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Preference number: 2 (lower is better) Translates to: ERCPLQKEQINPLGPLSCVSPIS*CVCGNP Trigger: GGGATTGCCACACACACACCAAGAAATTGGGGACAC...GCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR TCA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTGCCAGCAGGAGCTGGGATaGAGCAAGATACATCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: ERCPLQKEQINPLGPLSCQQELG*SKIHPK Trigger: TTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTG...GCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR GCA 90 bp | AGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAAAAGATTGTCTGAGACGCAATaGCACAAAGGCCAAACTCAG | + |
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Preference number: 2 (lower is better) Translates to: RKDRRPAGAGMKQDTSKRLSETQ*HKGQTQ Trigger: CTGAGTTTGGCCTTTGTGGCATTGCGTCTCAGACAA...TCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR GCA 72 bp | CCCCAGGTGACCCAAGTCCATTCTCAGTCCCCTTGCTaGTTTCTTGAGGTGGGCTGGAACTCCAGGACACAG | + |
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Preference number: 3 (lower is better) Translates to: PQVTQVHSQSPC*FLEVGWNSRTQ Trigger: CTGTGTCCTGGAGTTCCAGCCCACCTCAAGAAAGCAGCAAGGGGACTGAGAATGGACTTGGGTCACCTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR CCA 72 bp | ATTTCCCTGAACTTCCGCCAATGGCTTTCAGTGGAGTaGGGACAGGTAGGGGCCCATGGGAAGCCCCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: ISLNFRQWLSVE*GQVGAHGKPQS Trigger: TGACTGGGGCTTCCCATGGGCCCCTACCTGTCCCCACTCCACTGAAAGCCATTGGCGGAAGTTCAGGGAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR TCA 72 bp | GTCTGCAGTAGTAGAGGATCCTACTGTAGACTCTCCTaGGACCTTCCCCACTCACCCCTGAGGATGACGGCC | + |
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Preference number: 3 (lower is better) Translates to: VCSSRGSYCRLS*DLPHSPLRMTA Trigger: GGCCGTCATCCTCAGGGGTGAGTGGGGAAGGTCTCAGGAGAGTCTACAGTAGGATCCTCTACTACTGCAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CAA 90 bp | AGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAAAAGAGGACAGATGTGTCCCTaGATAGAAATCCCTGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: RKDRRPAGAGMKQDTSKRGQMCP*IEIPAE Trigger: CTCAGCAGGGATTTCTATCAAGGGACACATCTGTCC...TCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR-3UTR CAA 90 bp | AGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAAAAGATGTGTCCCCAATTTCTaGGTGTGTGTGTGGCAATCC | + |
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Preference number: 3 (lower is better) Translates to: RKDRRPAGAGMKQDTSKRCVPNF*VCVWQS Trigger: GGATTGCCACACACACACCAAGAAATTGGGGACACA...TCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR GCA 72 bp | TATATGGGTGAGAGGCCAGGCGGAATGGAGGAGAGGTaGCCCCTACAGAAAGAACAAATAAATCCCTTAGGA | + |
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Preference number: 3 (lower is better) Translates to: YMGERPGGMEER*PLQKEQINPLG Trigger: TCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTCCTCCATTCCGCCTGGCCTCTCACCCATATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR GCA 72 bp | CAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTaGCTGCCCTGCGTTCATCACCCTTCAATGGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: QKEQINPLGPLS*LPCVHHPSMVR Trigger: TCTAACCATTGAAGGGTGATGAACGCAGGGCAGGCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR CCA 72 bp | CCCTGTTTACAGGAAGGACAGGAGACCAGCAGGAGCTaGGATGAAGCAAGATACATCCAAAAGACAAAAAGA | + |
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Preference number: 3 (lower is better) Translates to: PCLQEGQETSRS*DEARYIQKTKR Trigger: TCTTTTTGTCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCTGTAAACAGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR TCA 72 bp | TTTACAGGAAGGACAGGAGACCAGCAGGAGCTGGGATaGAGCAAGATACATCCAAAAGACAAAAAGAATTGG | + |
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Preference number: 3 (lower is better) Translates to: FTGRTGDQQELG*SKIHPKDKKNW Trigger: CCAATTCTTTTTGTCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCTGTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR TCA 72 bp | GTAAAGGTAGCATTACCCAAAGCCTCCCTCATTTCATaGTGGAAGATTCTGGAACAAATGGGAATGCCAGTA | + |
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Preference number: 3 (lower is better) Translates to: VKVALPKASLIS*WKILEQMGMPV Trigger: TACTGGCATTCCCATTTGTTCCAGAATCTTCCATCATGAAATGAGGGAGGCTTTGGGTAATGCTACCTTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR GCA 72 bp | CCCCAATTTCTTGGTGTGTGTGTGGCAATCCCTAATTaGCTTTCTAGAAAAGAAATCCAGTCTGCAGTAGTA | + |
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Preference number: 3 (lower is better) Translates to: PQFLGVCVAIPN*LSRKEIQSAVV Trigger: TACTACTGCAGACTGGATTTCTTTTCTAGAAAGGCAATTAGGGATTGCCACACACACACCAAGAAATTGGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR CCA 90 bp | TTCCGCCAATGGCTTTCAGTGGAGTGGGGACAGGTAGGGGCCCATGGGAAGCCCCAAGCCAGCAGGAGCTaGGCTGGGGACAGGGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: FRQWLSVEWGQVGAHGKPQASRS*AGDRAR Trigger: CCTAGCCCTGTCCCCAGCCCAGCTCCTGCTGGCTTG...GGGCTTCCCATGGGCCCCTACCTGTCCCCACTCCACTGAAAGCCATTGGCGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR GCA 90 bp | TCCTGGAGTCCAAGGCCACCCTCTGCAGACACCCGAGAGTGTGGAGCACATGACTCAGATCGGCCAGGATaGTGGCGGCCAGCAGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: SWSPRPPSADTRECGAHDSDRPG*WRPAGG Trigger: CCCACCTGCTGGCCGCCAGCATCCTGGCCGATCTGA...GTCATGTGCTCCACACTCTCGGGTGTCTGCAGAGGGTGGCCTTGGACTCCAGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR TCA 90 bp | AGTGTGGAGCACATGACGGCAGACCAGAGCCCTGTATCCATAGCCCGATGGCCGGGTGGTCGCTTCGGGTaGACCGCTTGGTACACAGGG | + |
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Preference number: 4 (lower is better) Translates to: SVEHMTADQSPVSIARWPGGRFG*TAWYTG Trigger: CCCTGTGTACCAAGCGGTTCACCCGAAGCGACCACC...CGGCCATCGGGCTATGGATACAGGGCTCTGGTCTGCCGTCATGTGCTCCACACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR TCA 90 bp | AGGCTCTCCAGAGGACAGATGTGTCCCTTGATAGAAATCCCTGCTGAGGCCCAGGGGAGACGAAGCGGCTaGGGAGGAGGAGACCGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RLSRGQMCPLIEIPAEAQGRRSG*GGGDRR Trigger: TCTCCGGTCTCCTCCTCCTCAGCCGCTTCGTCTCCC...CTGGGCCTCAGCAGGGATTTCTATCAAGGGACACATCTGTCCTCTGGAGAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR CCA 90 bp | TTACAGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAATGGCCTCGCGGCGCGTaGCGCGCACATCCAGACCGG | + |
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Preference number: 4 (lower is better) Translates to: LQEGQETSRSWDEARYIQWPRGA*RAHPDR Trigger: CCGGTCTGGATGTGCGCGCCACGCGCCGCGAGGCCA...TTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCTGTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR TCA 90 bp | TGGGAAGCCCCAGTCACCTATGGCTCTGTGTACCTGTGTCCCAACCTGGAGGGGTCCGCAGGTGTGACTTaGGGTGCGAAGACTTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: WEAPVTYGSVYLCPNLEGSAGVT*GAKTCN Trigger: ATTACAAGTCTTCGCACCTCAAGTCACACCTGCGGA...CCCCTCCAGGTTGGGACACAGGTACACAGAGCCATAGGTGACTGGGGCTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR GCA 90 bp | GAGAGGTGCCCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTTGTCCTGCGGCTTCCAGCCAAGCTaGAGGGCAGCGAGTCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ERCPLQKEQINPLGPLSCGFQPS*RAASRW Trigger: CCAGCGACTCGCTGCCCTGCAGCTTGGCTGGAAGCC...GCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGGGCACCTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR TCA 90 bp | TTACAGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAACCGAGGAGATGGCCATaGGCACGTCGGCGGCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: LQEGQETSRSWDEARYIQPRRWP*ARRRQS Trigger: ACTTTGCCGCCGACGTGCTCATGGCCATCTCCTCGG...TTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCTGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR GCA 90 bp | TTACAGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAAGGATGTCGCCGGGCGTaGTTGGTCAGGTGGTCGCTT | + |
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Preference number: 4 (lower is better) Translates to: LQEGQETSRSWDEARYIQGCRRA*LVRWSL Trigger: AAGCGACCACCTGACCAAGCACGCCCGGCGACATCC...TTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCTGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR CCA 90 bp | GACAGGACAGTTAACCATGGCTATTTACAGACAGAACCTGAGGCCACCTCCCAGGCTTTGGCGCAGCCATaGAAGGGACAGCGGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: DRTVNHGYLQTEPEATSQALAQP*KGQRWL Trigger: AAGCCACCGCTGTCCCTTCCATGGCTGCGCCAAAGC...CTGGGAGGTGGCCTCAGGTTCTGTCTGTAAATAGCCATGGTTAACTGTCCTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR CCA 90 bp | TTACAGGAAGGACAGGAGACCAGCAGGAGCTGGGATGAAGCAAGATACATCCAAACTTGTAATAGGCTTTaGCGCAGCCATGGAAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: LQEGQETSRSWDEARYIQTCNRL*RSHGRD Trigger: GTCCCTTCCATGGCTGCGCCAAAGCCTATTACAAGT...TTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTCCTGTCCTTCCTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| 3UTR CAA 72 bp | CCCCTACAGAAAGAACAAATAAATCCCTTAGGACCCTaGTCCTGCCTGCCCTGCGTTCATCACCCTTCAATG | + |
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Preference number: 4 (lower is better) Translates to: PLQKEQINPLGP*SCLPCVHHPSM Trigger: CATTGAAGGGTGATGAACGCAGGGCAGGCAGGACAAGGGTCCTAAGGGATTTATTTGTTCTTTCTGTAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS CCA 90 bp | ACCGGCCCGCCTCTCAGATCGGCCAGGATGCTGGCGGCCAGCAGGTaGGGCGCAGCGGTGGCGCCTCCCGGCCCCGGAGCCGTAGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: TGPPLRSARMLAASR*GAAVAPPGPGAVAG Trigger: GCCAGCTACGGCTCCGGGGCCGGGAGGCGCCACCGCTGCGCCCCACCTGCTGGCCGCCAGCATCCTGGCCGATCTGAGAGGCGGGCCGGT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR CAA 90 bp | TGGGAAGCCCCAGTCACCTATGGCTCTGTGTACCTGTGTCCCAACCTGGAGGGGGAACGGGCGAACTTCTaGTCACAGCCAGGCCAGTCG | + |
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Preference number: 5 (lower is better) Translates to: WEAPVTYGSVYLCPNLEGERANF*SQPGQS Trigger: CGACTGGCCTGGCTGTGACAAGAAGTTCGCCCGTTC...CCCCTCCAGGTTGGGACACAGGTACACAGAGCCATAGGTGACTGGGGCTTCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS-3UTR CAA 90 bp | GCCAACACAGGGCAGCTCAACTTTCTCTGTGTCCCCAATTTCTTGGTGTGTGTGCTTCGGGTGAACCGCTaGGTACACAGGGGGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: ANTGQLNFLCVPNFLVCVLRVNR*VHRGQG Trigger: CCCCTGCCCCCTGTGTACCAAGCGGTTCACCCGAAG...CACACACACCAAGAAATTGGGGACACAGAGAAAGTTGAGCTGCCCTGTGTTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS GCA 72 bp | TGGCGACTACCGGCCCGCCTCTCAGATCGGCCAGGATaGTGGCGGCCAGCAGGTGGGGCGCAGCGGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: WRLPARLSDRPG*WRPAGGAQRWR Trigger: GCGCCACCGCTGCGCCCCACCTGCTGGCCGCCAGCATCCTGGCCGATCTGAGAGGCGGGCCGGTAGTCGCCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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| CDS TCA 72 bp | GTCCGCGATGCACCACGGCTCCCGAGGAGATGGCCATaGGCACGTCGGCGGCAAAGTAATCCACACACGCCA | + |
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Preference number: 6 (lower is better) Translates to: VRDAPRLPRRWP*ARRRQSNPHTP Trigger: TGGCGTGTGTGGATTACTTTGCCGCCGACGTGCTCATGGCCATCTCCTCGGGAGCCGTGGTGCATCGCGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038558.9 |
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