RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024862

Ensembl transcript IDs: ENSMUST00000025798.13, ENSMUST00000113727.8, ENSMUST00000113728.8, ENSMUST00000116563.8, ENSMUST00000156717.2

Found 278 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTaGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTG +
Preference number: 1 (lower is better)
Translates to: YHHWERGDLRPGRYH*IRERQVVAREYRGL
Trigger: CAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR CCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTaGAACGAATCCCTCCAAGACCAGGCGAAGAGGTCTAGGGACCCC +
Preference number: 1 (lower is better)
Translates to: HRALWCEGLGICKME*NESLQDQAKRSRDP
Trigger: GGGGTCCCTAGACCTCTTCGCCTGGTCTTGGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR CCA 90 bp AGCAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATaGAGTGGAACGAATCCCTCCAAGACCAGGCGAAGAGGTCTAGGG +
Preference number: 1 (lower is better)
Translates to: SSTGPCGVRVWAFAR*SGTNPSKTRRRGLG
Trigger: CCCTAGACCTCTTCGCCTGGTCTTGGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR TCA 90 bp TCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTaGGGGGACAGCAAGTACTTAGTGTTCTTGGCTTTGGGGCTGGGT +
Preference number: 1 (lower is better)
Translates to: SLYTEATAGSGGQRC*GDSKYLVFLALGLG
Trigger: ACCCAGCCCCAAAGCCAAGAACACTAAGTACTTGCTGTCCCCTCAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR GCA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGACAAGCAGCAGGCCCATaGGCAGGGCTGGGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: ATTPTGPELREERPPAGRQAAGP*AGLGEG
Trigger: CCCTTCCCCCAGCCCTGCGCATGGGCCTGCTGCTTG...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGGCCCATGCGCAGGGCTaGGGGAAGGGACCATGTCGG +
Preference number: 2 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAAHAQG*GKGPCR
Trigger: CCGACATGGTCCCTTCCCCCAGCCCTGCGCATGGGC...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCGCCCATGCGCAGGGCTaGGGGAAGGGACCATGTCGG +
Preference number: 2 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSAHAQG*GKGPCR
Trigger: CCGACATGGTCCCTTCCCCCAGCCCTGCGCATGGGC...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGAGCAACGGCCGGGAGTaGAGGGCAAAGGTGCTGAGG +
Preference number: 2 (lower is better)
Translates to: WIRERQVVAREYRGLRGGSNGRE*RAKVLR
Trigger: CCTCAGCACCTTTGCCCTCCACTCCCGGCCGTTGCT...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCACCTGGGCGGTACCACTaGATAAGAGAGAGGCAGGTG +
Preference number: 2 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSPGRYH*IRERQV
Trigger: CACCTGCCTCTCTCTTATCCAGTGGTACCGCCCAGG...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGCCACTGGGAACGGGGTaGTTTAAGGCCTGGGCGGTA +
Preference number: 2 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAPLGTG*FKAWAV
Trigger: TACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGG...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACAAGCAGCAGGCCCATaGGCAGGGCTGGGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: RYHHWERGDLRPGRYHWIQAAGP*AGLGEG
Trigger: CCCTTCCCCCAGCCCTGCGCATGGGCCTGCTGCTTG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATGCCCATGCGCAGGGCTaGGGGAAGGGACCATGTCGG +
Preference number: 2 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNAHAQG*GKGPCR
Trigger: CCGACATGGTCCCTTCCCCCAGCCCTGCGCATGGGC...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAGCAACGGCCGGGAGTaGAGGGCAAAGGTGCTGAGG +
Preference number: 2 (lower is better)
Translates to: STGPCGVRVWAFARWSGTSNGRE*RAKVLR
Trigger: CCTCAGCACCTTTGCCCTCCACTCCCGGCCGTTGCT...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGCAGCACAGGGCCCTGTaGTGTGAGGGTCTGGGCATT +
Preference number: 2 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAQHRAL*CEGLGI
Trigger: AATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTCCAGGGCCATGGCTaGGATGACAAGGGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: WIRERQVVAREYRGLRGGLQGHG*DDKGGS
Trigger: ACTTCCTCCCTTGTCATCTCAGCCATGGCCCTGGAG...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGCACTCCCACAGGCCCTaGACTCAGGGAAGAAAGGCC +
Preference number: 2 (lower is better)
Translates to: STGPCGVRVWAFARWSGTHSHRP*TQGRKA
Trigger: GGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTG...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCACTCCCACAGGCCCTaGACTCAGGGAAGAAAGGCC +
Preference number: 2 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVHSHRP*TQGRKA
Trigger: GGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCAGGGCCCTGTGGTGTaGGGGTCTGGGCATTTGCAA +
Preference number: 2 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVQGPVV*GSGHLQ
Trigger: TTGCAAATGCCCAGACCCTCACACCACAGGGCCCTG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGAAAGACAGGGGTCCTTaGGAGGGGCAGGCAGGACAA +
Preference number: 2 (lower is better)
Translates to: WIRERQVVAREYRGLRGGKDRGP*EGQAGQ
Trigger: TTGTCCTGCCTGCCCCTCCCAAGGACCCCTGTCTTT...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGCTCCAGGGCCATGGCTaGGATGACAAGGGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMLQGHG*DDKGGS
Trigger: ACTTCCTCCCTTGTCATCTCAGCCATGGCCCTGGAG...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCCCACTGGGAACGGGGTaGTTTAAGGCCTGGGCGGTA +
Preference number: 2 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSPLGTG*FKAWAV
Trigger: TACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGG...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATAGCAACGGCCGGGAGTaGAGGGCAAAGGTGCTGAGG +
Preference number: 2 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNSNGRE*RAKVLR
Trigger: CCTCAGCACCTTTGCCCTCCACTCCCGGCCGTTGCT...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCACCAGAACTTGAAGCTTaGGAGATACCACCACTGGGA +
Preference number: 2 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSPELEA*EIPPLG
Trigger: TCCCAGTGGTGGTATCTCCCAAGCTTCAAGTTCTGG...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCACCTTTTGGGAGGCTCTaGTCCCAGAACTTGAAGCTT +
Preference number: 2 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSPFGRL*SQNLKL
Trigger: AAGCTTCAAGTTCTGGGACCAGAGCCTCCCAAAAGG...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR GCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGCAAGCAGCAGGCCCATaGGCAGGGCTGGGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLQAAGP*AGLGEG
Trigger: CCCTTCCCCCAGCCCTGCGCATGGGCCTGCTGCTTG...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAACCTGGGCGGTACCACTaGATAAGAGAGAGGCAGGTG +
Preference number: 2 (lower is better)
Translates to: HRALWCEGLGICKMEWNEPGRYH*IRERQV
Trigger: CACCTGCCTCTCTCTTATCCAGTGGTACCGCCCAGG...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACTCCAGGGCCATGGCTaGGATGACAAGGGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: RYHHWERGDLRPGRYHWILQGHG*DDKGGS
Trigger: ACTTCCTCCCTTGTCATCTCAGCCATGGCCCTGGAG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTCTGGTCCCAGAACTTaGAGCTTGGGAGATACCACC +
Preference number: 2 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVSGPRT*SLGDTT
Trigger: GGTGGTATCTCCCAAGCTTCAAGTTCTGGGACCAGA...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCTGGGCGGTACCACTaGATAAGAGAGAGGCAGGTG +
Preference number: 2 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNPGRYH*IRERQV
Trigger: CACCTGCCTCTCTCTTATCCAGTGGTACCGCCCAGG...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR TCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCTGGTCCCAGAACTTaGAGCTTGGGAGATACCACC +
Preference number: 2 (lower is better)
Translates to: HRALWCEGLGICKMEWNESGPRT*SLGDTT
Trigger: GGTGGTATCTCCCAAGCTTCAAGTTCTGGGACCAGA...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCTTTTGGGAGGCTCTaGTCCCAGAACTTGAAGCTT +
Preference number: 2 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVPFGRL*SQNLKL
Trigger: AAGCTTCAAGTTCTGGGACCAGAGCCTCCCAAAAGG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAACCAGAACTTGAAGCTTaGGAGATACCACCACTGGGA +
Preference number: 2 (lower is better)
Translates to: HRALWCEGLGICKMEWNEPELEA*EIPPLG
Trigger: TCCCAGTGGTGGTATCTCCCAAGCTTCAAGTTCTGG...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCCCTTTTGGGAGGCTCTaGTCCCAGAACTTGAAGCTT +
Preference number: 2 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSPFGRL*SQNLKL
Trigger: AAGCTTCAAGTTCTGGGACCAGAGCCTCCCAAAAGG...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGAAAGACAGGGGTCCTTaGGAGGGGCAGGCAGGACAA +
Preference number: 2 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLKDRGP*EGQAGQ
Trigger: TTGTCCTGCCTGCCCCTCCCAAGGACCCCTGTCTTT...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR CCA 72 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTaGACTGAGAGGAGGGCTGAGAGGATGACACACGGC +
Preference number: 3 (lower is better)
Translates to: DKREAGGGPGIP*TERRAERMTHG
Trigger: GCCGTGTGTCATCCTCTCAGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR TCA 72 bp GCTGGAGCCGGCAGGACCGTCCTCCAGGGCCATGGCTaGGATGACAAGGGAGGAAGTTACCCTGAGATTGAA +
Preference number: 3 (lower is better)
Translates to: AGAGRTVLQGHG*DDKGGSYPEIE
Trigger: TTCAATCTCAGGGTAACTTCCTCCCTTGTCATCTCAGCCATGGCCCTGGAGGACGGTCCTGCCGGCTCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR CCA 72 bp TGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTaGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATAC +
Preference number: 3 (lower is better)
Translates to: WERGDLRPGRYH*IRERQVVAREY
Trigger: GTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGTTAGTGTTCTTGGCTTaGGGGCTGGGTAGACAGGCC +
Preference number: 3 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMLVFLA*GLGRQA
Trigger: GGCCTGTCTACCCAGCCCCAAAGCCAAGAACACTAA...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTTAGTGTTCTTGGCTTaGGGGCTGGGTAGACAGGCC +
Preference number: 3 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVLVFLA*GLGRQA
Trigger: GGCCTGTCTACCCAGCCCCAAAGCCAAGAACACTAA...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR GCA 72 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTaGAAGATGGAGTGGAACGAATCCCTCCAAGACCAG +
Preference number: 3 (lower is better)
Translates to: QHRALWCEGLGI*KMEWNESLQDQ
Trigger: CTGGTCTTGGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCTTAGTGTTCTTGGCTTaGGGGCTGGGTAGACAGGCC +
Preference number: 3 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSLVFLA*GLGRQA
Trigger: GGCCTGTCTACCCAGCCCCAAAGCCAAGAACACTAA...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGCTCTGGTCCCAGAACTaGAAGCTTGGGAGATACCAC +
Preference number: 3 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMLWSQN*KLGRYH
Trigger: GTGGTATCTCCCAAGCTTCAAGTTCTGGGACCAGAG...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACCTCTGGTCCCAGAACTaGAAGCTTGGGAGATACCAC +
Preference number: 3 (lower is better)
Translates to: QHRALWCEGLGICKMEWNLWSQN*KLGRYH
Trigger: GTGGTATCTCCCAAGCTTCAAGTTCTGGGACCAGAG...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTCTCTGGTCCCAGAACTaGAAGCTTGGGAGATACCAC +
Preference number: 3 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCLWSQN*KLGRYH
Trigger: GTGGTATCTCCCAAGCTTCAAGTTCTGGGACCAGAG...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR TCA 72 bp ATTAAGTCCCCGGAAGCAGCACAGGGCCCTGTGGTGTaGGGGTCTGGGCATTTGCAAGATGGAGTGGAACGA +
Preference number: 3 (lower is better)
Translates to: IKSPEAAQGPVV*GSGHLQDGVER
Trigger: TCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTGCTTCCGGGGACTTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR CCA 72 bp CTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTaGAACGAATCCCTCCAAGACCAGGCGAAGAGGTCT +
Preference number: 3 (lower is better)
Translates to: LWCEGLGICKME*NESLQDQAKRS
Trigger: AGACCTCTTCGCCTGGTCTTGGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTAAGTACTTAGTGTTCTaGGCTTTGGGGCTGGGTAGA +
Preference number: 3 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCKYLVF*ALGLGR
Trigger: TCTACCCAGCCCCAAAGCCAAGAACACTAAGTACTT...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
3UTR-3UTR CAA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAAAAGTACTTAGTGTTCTaGGCTTTGGGGCTGGGTAGA +
Preference number: 3 (lower is better)
Translates to: HRALWCEGLGICKMEWNEKYLVF*ALGLGR
Trigger: TCTACCCAGCCCCAAAGCCAAGAACACTAAGTACTT...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCATCCCAAAGGAGCCACTaGGCCGCAGAGAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSSQRSH*AAESRC
Trigger: GCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGA...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCAAATGCCAGGATCACCTaGGCCTCCCCAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSNARIT*ASPSPS
Trigger: GCTGGGGCTTGGGGAGGCTCAGGTGATCCTGGCATT...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGTGCGGCTTCCAGCTTaGCCTGGCGCCGGTACAGGG +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRAVRLPA*PGAGTG
Trigger: CCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCAC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGCCGCAGAGAGCCGCTaGCGTCCCCACTCCACTCAG +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRAAAESR*RPHSTQ
Trigger: CTGAGTGGAGTGGGGACGGCAGCGGCTCTCTGCGGC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGATCCCAAAGGAGCCACTaGGCCGCAGAGAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: ATTPTGPELREERPPAGRSQRSH*AAESRC
Trigger: GCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGA...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGGCTTCCAGCTTGCCCTaGCGCCGGTACAGGGCGCCC +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGASSLP*RRYRAP
Trigger: GGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGC...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGGCTTCCAGCTTGCCCTaGCGCCGGTACAGGGCGCCC +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTASSLP*RRYRAP
Trigger: GGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGC...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGGCTTCCAGCTTGCCCTaGCGCCGGTACAGGGCGCCC +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVASSLP*RRYRAP
Trigger: GGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGC...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCGCTAGCAGGGCACGATaGTCCCCTCTCAGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSASRAR*SPLRVS
Trigger: AGAGACCCTGAGAGGGGAGCATCGTGCCCTGCTAGC...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGACTGCGCTGCAGCTTCTaGTGTGTCCCTGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: ATTPTGPELREERPPAGRLRCSF*CVPASS
Trigger: GGAGCTGGCAGGGACACAGCAGAAGCTGCAGCGCAG...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTGCGGCTTCCAGCTTaGCCTGGCGCCGGTACAGGG +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCVRLPA*PGAGTG
Trigger: CCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCAC...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGGCCGCAGAGAGCCGCTaGCGTCCCCACTCCACTCAG +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGAAESR*RPHSTQ
Trigger: CTGAGTGGAGTGGGGACGGCAGCGGCTCTCTGCGGC...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTTGTGGGCCCCCTCCCTaGAGCTTCCTCACCAGCATC +
Preference number: 4 (lower is better)
Translates to: GRQATTPTGPELREERPPCGPPP*SFLTSI
Trigger: GATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACA...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTCTCCTCCTCCAGGGCTaGGGGCTGGGCTCTGTTCAT +
Preference number: 4 (lower is better)
Translates to: GRQATTPTGPELREERPPLLLQG*GLGSVH
Trigger: ATGAACAGAGCCCAGCCCCCAGCCCTGGAGGAGGAG...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGAATGCCAGGATCACCTaGGCCTCCCCAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGNARIT*ASPSPS
Trigger: GCTGGGGCTTGGGGAGGCTCAGGTGATCCTGGCATT...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGAGCTAGCAGGGCACGATaGTCCCCTCTCAGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: ATTPTGPELREERPPAGRASRAR*SPLRVS
Trigger: AGAGACCCTGAGAGGGGAGCATCGTGCCCTGCTAGC...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGATCCAGGCCCTGTTTaGGGCTGCGGCTGGCACAGT +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRADPGPV*GCGWHS
Trigger: ACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAAGCCGCAGAGAGCCGCTaGCGTCCCCACTCCACTCAG +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNEAAESR*RPHSTQ
Trigger: CTGAGTGGAGTGGGGACGGCAGCGGCTCTCTGCGGC...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGTCCCAAAGGAGCCACTaGGCCGCAGAGAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGSQRSH*AAESRC
Trigger: GCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGA...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTGTGGGCCCCCTCCCTaGAGCTTCCTCACCAGCATC +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMACGPPP*SFLTSI
Trigger: GATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTTGTGGGCCCCCTCCCTaGAGCTTCCTCACCAGCATC +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRACGPPP*SFLTSI
Trigger: GATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACA...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGGGTCGCAGCCACAGCTaGGTGGTCCTTGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGGRSHS*VVLAQC
Trigger: ACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCACAGGACCAAGGCGTGTaGCATAGATCTCCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSQDQGV*HRSPGL
Trigger: GAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTG...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCCCGTGCCTCCAGGCTaGACTGGCTCTTCCACACTC +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGPVPPG*TGSSTL
Trigger: GAGTGTGGAAGAGCCAGTCCAGCCTGGAGGCACGGG...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGCTAGCAGGGCACGATaGTCCCCTCTCAGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRAASRAR*SPLRVS
Trigger: AGAGACCCTGAGAGGGGAGCATCGTGCCCTGCTAGC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCTGCGCTGCAGCTTCTaGTGTGTCCCTGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGLRCSF*CVPASS
Trigger: GGAGCTGGCAGGGACACAGCAGAAGCTGCAGCGCAG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTCAGCTGGGTGGTCCTTaGCCAGTGTCTTTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: GRQATTPTGPELREERPPQLGGP*PVSFPG
Trigger: TCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTG...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGACAGCTGGGTGGTCCTTaGCCAGTGTCTTTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: ATTPTGPELREERPPAGRQLGGP*PVSFPG
Trigger: TCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTG...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCACATCTGGGTGAAACTTaGCCAGGACCTTCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSHLGET*PGPSPG
Trigger: TCCGGGAGAAGGTCCTGGGCAAGTTTCACCCAGATG...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATAGTGCGGCTTCCAGCTTaGCCTGGCGCCGGTACAGGG +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWIVRLPA*PGAGTG
Trigger: CCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCAC...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGGATCCAGGCCCTGTTTaGGGCTGCGGCTGGCACAGT +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGDPGPV*GCGWHS
Trigger: ACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATC...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCAAAGGAGCCACTaGGCCGCAGAGAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNESQRSH*AAESRC
Trigger: GCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGA...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTGTGGGCCCCCTCCCTaGAGCTTCCTCACCAGCATC +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTCGPPP*SFLTSI
Trigger: GATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACA...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCTCCAGGGCTGGGGGCTaGGCTCTGTTCATCTTCATT +
Preference number: 4 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSSRAGG*ALFIFI
Trigger: AATGAAGATGAACAGAGCCCAGCCCCCAGCCCTGGA...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGCTCCTCCTCCAGGGCTaGGGGCTGGGCTCTGTTCAT +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMLLLQG*GLGSVH
Trigger: ATGAACAGAGCCCAGCCCCCAGCCCTGGAGGAGGAG...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCGTGCCTCCAGGCTaGACTGGCTCTTCCACACTC +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVPVPPG*TGSSTL
Trigger: GAGTGTGGAAGAGCCAGTCCAGCCTGGAGGCACGGG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGCCCGTGCCTCCAGGCTaGACTGGCTCTTCCACACTC +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMPVPPG*TGSSTL
Trigger: GAGTGTGGAAGAGCCAGTCCAGCCTGGAGGCACGGG...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAAAATGCCAGGATCACCTaGGCCTCCCCAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNENARIT*ASPSPS
Trigger: GCTGGGGCTTGGGGAGGCTCAGGTGATCCTGGCATT...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTAGGTCCGACTCAGATTaGGGCCCAGCCACATCTCTG +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRARSDSD*GPATSL
Trigger: CAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCT...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAACTGCGCTGCAGCTTCTaGTGTGTCCCTGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNELRCSF*CVPASS
Trigger: GGAGCTGGCAGGGACACAGCAGAAGCTGCAGCGCAG...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCTCTCCAGTGCTCTCTTaGACAGTGGCTCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSSPVLS*TVAQPL
Trigger: AAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGA...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTCCCGGATCTCCAGTaGTCTCTTGCACAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGLPDLQ*SLAQWL
Trigger: GAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAAGATCCAGGCCCTGTTTaGGGCTGCGGCTGGCACAGT +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNEDPGPV*GCGWHS
Trigger: ACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATC...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCCAGCATCTCACTGCTaGGTCTCAGAGCATCCCGGA +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGPASHC*VSEHPG
Trigger: TCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGG...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGAAGCTGGAGCTCAAAGTaGGGCTGTCAGAAAGACCCG +
Preference number: 4 (lower is better)
Translates to: ATTPTGPELREERPPAGRSWSSK*GCQKDP
Trigger: CGGGTCTTTCTGACAGCCGCACTTTGAGCTCCAGCT...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCCTCCTCCTCCAGGGCTaGGGGCTGGGCTCTGTTCAT +
Preference number: 4 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSLLLQG*GLGSVH
Trigger: ATGAACAGAGCCCAGCCCCCAGCCCTGGAGGAGGAG...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCAAGGGTCTCTGCATCCTaGTACTTGCCCTGTTTCAGG +
Preference number: 4 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSRVSAS*YLPCFR
Trigger: CCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCT...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTTCTACCACCTTGGTCTaGCTGGCAGGATCCAGGCCC +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCSTTLV*LAGSRP
Trigger: GGGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGA...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTCTACCACCTTGGTCTaGCTGGCAGGATCCAGGCCC +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTSTTLV*LAGSRP
Trigger: GGGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGA...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCAGCTTCTGCTTCTCTaGCTCCACAGCCCCCAGATG +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVQLLLL*LHSPQM
Trigger: CATCTGGGGGCTGTGGAGTCAGAGAAGCAGAAGCTG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTTCTCTTCCTCCAGCTaGGCCACCGCCTGTTCACTG +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVFSSSS*ATACSL
Trigger: CAGTGAACAGGCGGTGGCTCAGCTGGAGGAAGAGAA...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGAGGTCCGACTCAGATTaGGGCCCAGCCACATCTCTG +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMRSDSD*GPATSL
Trigger: CAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCT...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGAGGTCCGACTCAGATTaGGGCCCAGCCACATCTCTG +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVRSDSD*GPATSL
Trigger: CAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCT...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACCTTCTGCTGTGTCCCTaGCAGCTCCTCACGCAACCA +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNLLLCP*QLLTQP
Trigger: TGGTTGCGTGAGGAGCTGGCAGGGACACAGCAGAAG...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCTGCGCTGCAGCTTCTaGTGTGTCCCTGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNLRCSF*CVPASS
Trigger: GGAGCTGGCAGGGACACAGCAGAAGCTGCAGCGCAG...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCAGCTGGGTGGTCCTTaGCCAGTGTCTTTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGQLGGP*PVSFPG
Trigger: TCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGCTCCCGGATCTCCAGTaGTCTCTTGCACAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTLPDLQ*SLAQWL
Trigger: GAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTCTTCCAGTGTGTGTaGGGCTTCCAGCTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNVFQCV*GFQLAL
Trigger: CAGGGCAAGCTGGAAGCCGCACACACACTGGAAGAC...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTCTTCCAGTGTGTGTaGGGCTTCCAGCTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCVFQCV*GFQLAL
Trigger: CAGGGCAAGCTGGAAGCCGCACACACACTGGAAGAC...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGGTCTTCCAGTGTGTGTaGGGCTTCCAGCTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGVFQCV*GFQLAL
Trigger: CAGGGCAAGCTGGAAGCCGCACACACACTGGAAGAC...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGTCTTCCAGTGTGTGTaGGGCTTCCAGCTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMVFQCV*GFQLAL
Trigger: CAGGGCAAGCTGGAAGCCGCACACACACTGGAAGAC...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATGATCCAGGCCCTGTTTaGGGCTGCGGCTGGCACAGT +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNDPGPV*GCGWHS
Trigger: ACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATC...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCCAGCATCTCACTGCTaGGTCTCAGAGCATCCCGGA +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGPASHC*VSEHPG
Trigger: TCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTTCACCAGCATCTCACTaGTGCGTCTCAGAGCATCCC +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRASPASH*CVSEHP
Trigger: GGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGA...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGAGCTGGAGCTCAAAGTaGGGCTGTCAGAAAGACCCG +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGSWSSK*GCQKDP
Trigger: CGGGTCTTTCTGACAGCCGCACTTTGAGCTCCAGCT...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGCCTGGATCACCGCCTTaGTGCCCAGCACTATCTCGT +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTPGSPP*CPALSR
Trigger: ACGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGG...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCCTGGATCACCGCCTTaGTGCCCAGCACTATCTCGT +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGPGSPP*CPALSR
Trigger: ACGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTCCAGGGCTGGGGGCTaGGCTCTGTTCATCTTCATT +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMASRAGG*ALFIFI
Trigger: AATGAAGATGAACAGAGCCCAGCCCCCAGCCCTGGA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACTCCTCCTCCAGGGCTaGGGGCTGGGCTCTGTTCAT +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWILLLQG*GLGSVH
Trigger: ATGAACAGAGCCCAGCCCCCAGCCCTGGAGGAGGAG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATGGTCGCAGCCACAGCTaGGTGGTCCTTGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNGRSHS*VVLAQC
Trigger: ACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTCAGGACCAAGGCGTGTaGCATAGATCTCCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCQDQGV*HRSPGL
Trigger: GAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTG...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTAGGGTCTCTGCATCCTaGTACTTGCCCTGTTTCAGG +
Preference number: 4 (lower is better)
Translates to: GRQATTPTGPELREERPPRVSAS*YLPCFR
Trigger: CCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCT...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGGCTTCCAGCTTGCCCTaGCGCCGGTACAGGGCGCCC +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLASSLP*RRYRAP
Trigger: GGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGC...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGCCTCCAGGCTGGACTaGCTCTTCCACACTCTTGTT +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRAASRLD*LFHTLV
Trigger: AACAAGAGTGTGGAAGAGCCAGTCCAGCCTGGAGGC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGAGAGGTCCATGGAGCTaGAGCTCAAAGTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMARGPWS*SSKCGC
Trigger: ACAGCCGCACTTTGAGCTCCAGCTCCATGGACCTCT...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTAGAGGTCCATGGAGCTaGAGCTCAAAGTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRARGPWS*SSKCGC
Trigger: ACAGCCGCACTTTGAGCTCCAGCTCCATGGACCTCT...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCTTCGGATCTGACTCATaGATAGCAGGTGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSFGSDS*IAGAAS
Trigger: AGAAGCAGCACCTGCTATTCATGAGTCAGATCCGAA...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCGCATCATTGAGCAGGTaGGCAGCATCCTTGTACTTA +
Preference number: 4 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSASLSR*AASLYL
Trigger: TAAGTACAAGGATGCTGCTCACCTGCTCAATGATGC...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCAGCTTGTTCTCTCCATTaGCTGAGCCAAACTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSACSLH*LSQTPS
Trigger: AGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAAGC...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATGCTAGCAGGGCACGATaGTCCCCTCTCAGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNASRAR*SPLRVS
Trigger: AGAGACCCTGAGAGGGGAGCATCGTGCCCTGCTAGC...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTTGTACTTGCCCCGTTTaGCGTAGAGAACAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: GRQATTPTGPELREERPPCTCPV*RREQPD
Trigger: ATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACA...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTCTCCAGTGCTCTCTTaGACAGTGGCTCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMASPVLS*TVAQPL
Trigger: AAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAACTCCCGGATCTCCAGTaGTCTCTTGCACAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNELPDLQ*SLAQWL
Trigger: GAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACCATCTGGGTGAAACTTaGCCAGGACCTTCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNHLGET*PGPSPG
Trigger: TCCGGGAGAAGGTCCTGGGCAAGTTTCACCCAGATG...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCATCTGGGTGAAACTTaGCCAGGACCTTCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVHLGET*PGPSPG
Trigger: TCCGGGAGAAGGTCCTGGGCAAGTTTCACCCAGATG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCCCAGCATCTCACTGCTaGGTCTCAGAGCATCCCGGA +
Preference number: 4 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSPASHC*VSEHPG
Trigger: TCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGG...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTCACCAGCATCTCACTaGTGCGTCTCAGAGCATCCC +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVSPASH*CVSEHP
Trigger: GGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGA...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAAAGGGTCTCTAAACCCTaGATCACCGCCTTGGTGCCC +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNERVSKP*ITALVP
Trigger: GGGCACCAAGGCGGTGATCCAGGGTTTAGAGACCCT...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTCCACAGCCCCCAGATaGCTTGATAATGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMASTAPR*LDNARI
Trigger: GATCCTGGCATTATCAAGCCATCTGGGGGCTGTGGA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGTCCACAGCCCCCAGATaGCTTGATAATGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGSTAPR*LDNARI
Trigger: GATCCTGGCATTATCAAGCCATCTGGGGGCTGTGGA...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTCCAGGGCTGGGGGCTaGGCTCTGTTCATCTTCATT +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTSRAGG*ALFIFI
Trigger: AATGAAGATGAACAGAGCCCAGCCCCCAGCCCTGGA...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCCCTTGTGAAGCATACTaGATTACCAGGTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSPCEAY*ITRLWR
Trigger: CCTCCACAACCTGGTAATCCAGTATGCTTCACAAGG...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCCTCCAGGCTGGACTaGCTCTTCCACACTCTTGTT +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMASRLD*LFHTLV
Trigger: AACAAGAGTGTGGAAGAGCCAGTCCAGCCTGGAGGC...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTAGAGGTCCATGGAGCTaGAGCTCAAAGTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCRGPWS*SSKCGC
Trigger: ACAGCCGCACTTTGAGCTCCAGCTCCATGGACCTCT...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATTTCTCTTCCTCCAGCTaGGCCACCGCCTGTTCACTG +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNFSSSS*ATACSL
Trigger: CAGTGAACAGGCGGTGGCTCAGCTGGAGGAAGAGAA...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTTGTTCTCTCCATTaGCTGAGCCAAACTCCTTCT +
Preference number: 4 (lower is better)
Translates to: GRQATTPTGPELREERPPACSLH*LSQTPS
Trigger: AGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAAGC...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATAGGTCCGACTCAGATTaGGGCCCAGCCACATCTCTG +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNRSDSD*GPATSL
Trigger: CAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCT...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTCATGAATAGCAGGTaGTGCTTCTCTTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGLMNSR*CFSSSS
Trigger: GCTGGAGGAAGAGAAGCAGCACCTGCTATTCATGAG...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGTCCCGATAAACCAGTaGCAGGATGTTCAGCATGGT +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRAVPINQ*QDVQHG
Trigger: ACCATGCTGAACATCCTGGCACTGGTTTATCGGGAC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCAGCTGGGTGGTCCTTaGCCAGTGTCTTTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNQLGGP*PVSFPG
Trigger: TCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTG...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGTGTACTTGCCCCGTTTaGCGTAGAGAACAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGCTCPV*RREQPD
Trigger: ATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACA...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTCTCCAGTGCTCTCTTaGACAGTGGCTCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTSPVLS*TVAQPL
Trigger: AAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGA...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTCTCCAGTGCTCTCTTaGACAGTGGCTCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVSPVLS*TVAQPL
Trigger: AAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGA...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACTCCCGGATCTCCAGTaGTCTCTTGCACAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWILPDLQ*SLAQWL
Trigger: GAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGCTGCATCCTGGTACTTaGCCTGTTTCAGGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMLHPGT*PVSGSR
Trigger: CCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAG...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACCTGCATCCTGGTACTTaGCCTGTTTCAGGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNLHPGT*PVSGSR
Trigger: CCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAG...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCTTGTACAGGGTCTCTaGATCCTGGTACTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGLVQGL*ILVLAL
Trigger: CAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGCTTGTACAGGGTCTCTaGATCCTGGTACTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMLVQGL*ILVLAL
Trigger: CAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAG...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCTGGATCACCGCCTTaGTGCCCAGCACTATCTCGT +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNPGSPP*CPALSR
Trigger: ACGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGG...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATAAGGGTCTCTAAACCCTaGATCACCGCCTTGGTGCCC +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWIRVSKP*ITALVP
Trigger: GGGCACCAAGGCGGTGATCCAGGGTTTAGAGACCCT...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACTCCACAGCCCCCAGATaGCTTGATAATGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNSTAPR*LDNARI
Trigger: GATCCTGGCATTATCAAGCCATCTGGGGGCTGTGGA...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGACCCTTCTCCTCATTTaGGGAAGCATCCTCATCCAG +
Preference number: 4 (lower is better)
Translates to: WIRERQVVAREYRGLRGGTLLLI*GSILIQ
Trigger: CTGGATGAGGATGCTTCCCCAAATGAGGAGAAGGGT...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACAGGACCAAGGCGTGTaGCATAGATCTCCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWIQDQGV*HRSPGL
Trigger: GAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACACAGTTCTACCACCTTaGTCTGGCTGGCAGGATCCA +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNTVLPP*SGWQDP
Trigger: TGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGT...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGACAGTTCTACCACCTTaGTCTGGCTGGCAGGATCCA +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGTVLPP*SGWQDP
Trigger: TGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGT...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGAATGCCAGGATCACCTaGGCCTCCCCAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLNARIT*ASPSPS
Trigger: GCTGGGGCTTGGGGAGGCTCAGGTGATCCTGGCATT...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTTCGGATCTGACTCATaGATAGCAGGTGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAFGSDS*IAGAAS
Trigger: AGAAGCAGCACCTGCTATTCATGAGTCAGATCCGAA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGGCATCATTGAGCAGGTaGGCAGCATCCTTGTACTTA +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAASLSR*AASLYL
Trigger: TAAGTACAAGGATGCTGCTCACCTGCTCAATGATGC...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTGCTTGTTCTCTCCATTaGCTGAGCCAAACTCCTTCT +
Preference number: 4 (lower is better)
Translates to: DKREAGGGPGIPWTERRAACSLH*LSQTPS
Trigger: AGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAAGC...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGTTCGCAGAGTGGTGTTaGCTGTGGGACTGTCAACTT +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMFAEWC*LWDCQL
Trigger: AAGTTGACAGTCCCACAGTCAACACCACTCTGCGAA...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTTTCGCAGAGTGGTGTTaGCTGTGGGACTGTCAACTT +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCFAEWC*LWDCQL
Trigger: AAGTTGACAGTCCCACAGTCAACACCACTCTGCGAA...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGGTCCCGATAAACCAGTaGCAGGATGTTCAGCATGGT +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGVPINQ*QDVQHG
Trigger: ACCATGCTGAACATCCTGGCACTGGTTTATCGGGAC...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CAGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTCCCGATAAACCAGTaGCAGGATGTTCAGCATGGT +
Preference number: 4 (lower is better)
Translates to: QHRALWCEGLGICKMEWNVPINQ*QDVQHG
Trigger: ACCATGCTGAACATCCTGGCACTGGTTTATCGGGAC...GTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGTGTACTTGCCCCGTTTaGCGTAGAGAACAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMCTCPV*RREQPD
Trigger: ATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACA...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGTGTACTTGCCCCGTTTaGCGTAGAGAACAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGCTCPV*RREQPD
Trigger: ATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACA...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAACTTGTACAGGGTCTCTaGATCCTGGTACTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNELVQGL*ILVLAL
Trigger: CAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAG...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATATCACCAGCATCTCACTaGTGCGTCTCAGAGCATCCC +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWISPASH*CVSEHP
Trigger: GGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGA...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATAAGCTGGAGCTCAAAGTaGGGCTGTCAGAAAGACCCG +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWISWSSK*GCQKDP
Trigger: CGGGTCTTTCTGACAGCCGCACTTTGAGCTCCAGCT...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATAGCTGGAGCTCAAAGTaGGGCTGTCAGAAAGACCCG +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNSWSSK*GCQKDP
Trigger: CGGGTCTTTCTGACAGCCGCACTTTGAGCTCCAGCT...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCTCCACAGCCCCCAGATaGCTTGATAATGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSSTAPR*LDNARI
Trigger: GATCCTGGCATTATCAAGCCATCTGGGGGCTGTGGA...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGACCCTTCTCCTCATTTaGGGAAGCATCCTCATCCAG +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVTLLLI*GSILIQ
Trigger: CTGGATGAGGATGCTTCCCCAAATGAGGAGAAGGGT...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTACCCTTCTCCTCATTTaGGGAAGCATCCTCATCCAG +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCTLLLI*GSILIQ
Trigger: CTGGATGAGGATGCTTCCCCAAATGAGGAGAAGGGT...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGCCTTGTGAAGCATACTaGATTACCAGGTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAPCEAY*ITRLWR
Trigger: CCTCCACAACCTGGTAATCCAGTATGCTTCACAAGG...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGGGTCGCAGCCACAGCTaGGTGGTCCTTGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLGRSHS*VVLAQC
Trigger: ACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTGCTCTCTTGCACAGTaGCTCAGCCTCTTTGTACTT +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMACSLAQ*LSLFVL
Trigger: AAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATGCCTCCAGGCTGGACTaGCTCTTCCACACTCTTGTT +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNASRLD*LFHTLV
Trigger: AACAAGAGTGTGGAAGAGCCAGTCCAGCCTGGAGGC...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGCCCGTGCCTCCAGGCTaGACTGGCTCTTCCACACTC +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLPVPPG*TGSSTL
Trigger: GAGTGTGGAAGAGCCAGTCCAGCCTGGAGGCACGGG...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGTTCGGATCTGACTCATaGATAGCAGGTGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMFGSDS*IAGAAS
Trigger: AGAAGCAGCACCTGCTATTCATGAGTCAGATCCGAA...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTTCGGATCTGACTCATaGATAGCAGGTGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTFGSDS*IAGAAS
Trigger: AGAAGCAGCACCTGCTATTCATGAGTCAGATCCGAA...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGGCATCATTGAGCAGGTaGGCAGCATCCTTGTACTTA +
Preference number: 4 (lower is better)
Translates to: STGPCGVRVWAFARWSGTASLSR*AASLYL
Trigger: TAAGTACAAGGATGCTGCTCACCTGCTCAATGATGC...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCTTGTTCTCTCCATTaGCTGAGCCAAACTCCTTCT +
Preference number: 4 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCACSLH*LSQTPS
Trigger: AGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAAGC...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCTTCGCAGAGTGGTGTTaGCTGTGGGACTGTCAACTT +
Preference number: 4 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSFAEWC*LWDCQL
Trigger: AAGTTGACAGTCCCACAGTCAACACCACTCTGCGAA...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp CACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATTCGCAGAGTGGTGTTaGCTGTGGGACTGTCAACTT +
Preference number: 4 (lower is better)
Translates to: HRALWCEGLGICKMEWNEFAEWC*LWDCQL
Trigger: AAGTTGACAGTCCCACAGTCAACACCACTCTGCGAA...TTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACTGCATCCTGGTACTTaGCCTGTTTCAGGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWILHPGT*PVSGSR
Trigger: CCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACTTGTACAGGGTCTCTaGATCCTGGTACTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWILVQGL*ILVLAL
Trigger: CAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGGTCCTCGTCCACCACTaGCATCTTTTAACAGTTCTA +
Preference number: 4 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAVLVHH*HLLTVL
Trigger: TAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGAC...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGTGCTCTCTTGCACAGTaGCTCAGCCTCTTTGTACTT +
Preference number: 4 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVCSLAQ*LSLFVL
Trigger: AAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCA...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGTCTACCACCTTGGTCTaGCTGGCAGGATCCAGGCCC +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLSTTLV*LAGSRP
Trigger: GGGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGA...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATACAGTTCTACCACCTTaGTCTGGCTGGCAGGATCCA +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNTVLPP*SGWQDP
Trigger: TGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGT...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGTTCTCTTCCTCCAGCTaGGCCACCGCCTGTTCACTG +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLFSSSS*ATACSL
Trigger: CAGTGAACAGGCGGTGGCTCAGCTGGAGGAAGAGAA...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR TCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCGCATCATTGAGCAGGTaGGCAGCATCCTTGTACTTA +
Preference number: 4 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSASLSR*AASLYL
Trigger: TAAGTACAAGGATGCTGCTCACCTGCTCAATGATGC...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATACTCATGAATAGCAGGTaGTGCTTCTCTTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWILMNSR*CFSSSS
Trigger: GCTGGAGGAAGAGAAGCAGCACCTGCTATTCATGAG...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGTCCTCGTCCACCACTaGCATCTTTTAACAGTTCTA +
Preference number: 4 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMVLVHH*HLLTVL
Trigger: TAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGAC...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCCCTTGTGAAGCATACTaGATTACCAGGTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSPCEAY*ITRLWR
Trigger: CCTCCACAACCTGGTAATCCAGTATGCTTCACAAGG...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGTCACCAGCATCTCACTaGTGCGTCTCAGAGCATCCC +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLSPASH*CVSEHP
Trigger: GGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGA...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGTCCAGGGCTGGGGGCTaGGCTCTGTTCATCTTCATT +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLSRAGG*ALFIFI
Trigger: AATGAAGATGAACAGAGCCCAGCCCCCAGCCCTGGA...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATTGCTCTCTTGCACAGTaGCTCAGCCTCTTTGTACTT +
Preference number: 4 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNCSLAQ*LSLFVL
Trigger: AAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCA...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGAGAGGTCCATGGAGCTaGAGCTCAAAGTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLRGPWS*SSKCGC
Trigger: ACAGCCGCACTTTGAGCTCCAGCTCCATGGACCTCT...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATAGTCCTCGTCCACCACTaGCATCTTTTAACAGTTCTA +
Preference number: 4 (lower is better)
Translates to: RYHHWERGDLRPGRYHWIVLVHH*HLLTVL
Trigger: TAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGAC...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR GCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGCTCATGAATAGCAGGTaGTGCTTCTCTTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLLMNSR*CFSSSS
Trigger: GCTGGAGGAAGAGAAGCAGCACCTGCTATTCATGAG...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGCCTTGTGAAGCATACTaGATTACCAGGTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLPCEAY*ITRLWR
Trigger: CCTCCACAACCTGGTAATCCAGTATGCTTCACAAGG...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CCA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGTGCTCTCTTGCACAGTaGCTCAGCCTCTTTGTACTT +
Preference number: 4 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLCSLAQ*LSLFVL
Trigger: AAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCA...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 90 bp CAGGCCCTGTTTGCGGCTGCGGCTGGCACAGTCTTCCAGTGTGTGTaGGGCTTCCAGCTTGCCCTGGCGCCGGTACAGGGCGCCCAAGCT +
Preference number: 5 (lower is better)
Translates to: QALFAAAAGTVFQCV*GFQLALAPVQGAQA
Trigger: AGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAGGGCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 90 bp AGGAGGCAGCGCTCCTGTGAGCCCGGCTCGGCCTCGCCTGCTTCATaGGAAGCTAGGGGAGCTAGCAGGGCACGATGCTCCCCTCTCAGG +
Preference number: 5 (lower is better)
Translates to: RRQRSCEPGSASPAS*EARGASRARCSPLR
Trigger: CCTGAGAGGGGAGCATCGTGCCCTGCTAGCTCCCCTAGCTTCTCATGAAGCAGGCGAGGCCGAGCCGGGCTCACAGGAGCGCTGCCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2
CDS GCA 90 bp GGCTGCGGCTGGCACAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTTaGCCTGGCGCCGGTACAGGGCGCCCAAGCTTCGCAGAGTGGTGT +
Preference number: 5 (lower is better)
Translates to: GCGWHSLPVCVRLPA*PGAGTGRPSFAEWC
Trigger: ACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCATGTGCGGCTTCCAGCTaGCCCTGGCGCCGGTACAGG +
Preference number: 5 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSCAASS*PWRRYR
Trigger: CCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACA...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 90 bp CCTTGGTCTGGCTGGCAGGATCCAGGCCCTGTTTGCGGCTGCGGCTaGCACAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTTGCCCTGGC +
Preference number: 5 (lower is better)
Translates to: PWSGWQDPGPVCGCG*HSLPVCVRLPACPG
Trigger: GCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATCCTGCCAGCCAGACCAAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 90 bp CTCCACTCAGCTGCAGGCCCTGACTCCTCCAGGTCCGACTCAGATTaGGGCCCAGCCACATCTCTGCTGCCACGGCGGTGTCCTCGTCCA +
Preference number: 5 (lower is better)
Translates to: LHSAAGPDSSRSDSD*GPATSLLPRRCPRP
Trigger: TGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 90 bp CGGCTGGCACAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTTGCCCTaGCGCCGGTACAGGGCGCCCAAGCTTCGCAGAGTGGTGTTGACT +
Preference number: 5 (lower is better)
Translates to: RLAQSSSVCAASSLP*RRYRAPKLRRVVLT
Trigger: AGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGTGTGCGGCTTCCAGCTaGCCCTGGCGCCGGTACAGG +
Preference number: 5 (lower is better)
Translates to: WIRERQVVAREYRGLRGGCAASS*PWRRYR
Trigger: CCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACA...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGACCCTGGATCACCGCCTaGGTGCCCAGCACTATCTCG +
Preference number: 5 (lower is better)
Translates to: ATTPTGPELREERPPAGRPWITA*VPSTIS
Trigger: CGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGG...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTTGTGCGGCTTCCAGCTaGCCCTGGCGCCGGTACAGG +
Preference number: 5 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCCAASS*PWRRYR
Trigger: CCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACA...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGATCCCGGCGCTTATCCTaGCTCTCCTCGCGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: ATTPTGPELREERPPAGRSRRLS*LSSRSS
Trigger: AGAGGAGCGCGAGGAGAGCAAGGATAAGCGCCGGGA...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGCCCTGGATCACCGCCTaGGTGCCCAGCACTATCTCG +
Preference number: 5 (lower is better)
Translates to: PSYCVGGRGTSEAEARMAPWITA*VPSTIS
Trigger: CGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGG...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCCAGGTCCGACTCAGATaGAGGCCCAGCCACATCTCT +
Preference number: 5 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSQVRLR*RPSHIS
Trigger: AGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTG...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCCCTGGATCACCGCCTaGGTGCCCAGCACTATCTCG +
Preference number: 5 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGPWITA*VPSTIS
Trigger: CGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCATCATCCAGGGAGTCTTaGGGGACATCACCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSSSRES*GTSPFS
Trigger: GGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGA...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCAGAACAGCCAGATTGTaGAGGGTCGCAGCCACAGCT +
Preference number: 5 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSRTARL*RVAATA
Trigger: AGCTGTGGCTGCGACCCTCAACAATCTGGCTGTTCT...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCCCAGGGTGGGGTCATTGGTCTTCGCCACATaGGGGTCATCAGGACCAAGG +
Preference number: 5 (lower is better)
Translates to: RQGWRGRMAQWAVPRVGSLVFAT*GSSGPR
Trigger: CCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAA...TGACCCCACCCTGGGCACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATATGTGCGGCTTCCAGCTaGCCCTGGCGCCGGTACAGG +
Preference number: 5 (lower is better)
Translates to: RYHHWERGDLRPGRYHWICAASS*PWRRYR
Trigger: CCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACA...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp TGGGGGAAGGGACCATGTCGGATGGAGGCTCTGGTGACTGGCTGCCCCTTCAGCAACAGTTCTACCACCTaGGTCTGGCTGGCAGGATCC +
Preference number: 5 (lower is better)
Translates to: WGKGPCRMEALVTGCPFSNSSTT*VWLAGS
Trigger: GGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTT...GCTGAAGGGGCAGCCAGTCACCAGAGCCTCCATCCGACATGGTCCCTTCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 90 bp CCAGGGAGCTTCTTCGAGAGAGGTCCATGGAGCTGGAGCTCAAAGTaGGGCTGTCAGAAAGACCCGTGCCTCCAGGCTGGACTGGCTCTT +
Preference number: 5 (lower is better)
Translates to: PGSFFERGPWSWSSK*GCQKDPCLQAGLAL
Trigger: AAGAGCCAGTCCAGCCTGGAGGCACGGGTCTTTCTGACAGCCGCACTTTGAGCTCCAGCTCCATGGACCTCTCTCGAAGAAGCTCCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGCAACCACTGGTTCTCTaGTACCAGGCGCCGCACCTG +
Preference number: 5 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGQPLVL*YQAPHL
Trigger: CAGGTGCGGCGCCTGGTACAAGAGAACCAGTGGTTG...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 90 bp GCCCAGCCACATCTCTGCTGCCACGGCGGTGTCCTCGTCCACCACTaGCATCTTTTAACAGTTCTACCACCTTGGTCTGGCTGGCAGGAT +
Preference number: 5 (lower is better)
Translates to: AQPHLCCHGGVLVHH*HLLTVLPPWSGWQD
Trigger: ATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 90 bp CTGACTCCTCCAGGTCCGACTCAGATTGAGGCCCAGCCACATCTCTaGTGCCACGGCGGTGTCCTCGTCCACCACTGCCATCTTTTAACA +
Preference number: 5 (lower is better)
Translates to: LTPPGPTQIEAQPHL*CHGGVLVHHCHLLT
Trigger: TGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 90 bp CACGATGCTCCCCTCTCAGGGTCTCTAAACCCTGGATCACCGCCTTaGTGCCCAGCACTATCTCGTCCTGACTCAGCTTCTCCTCTCGAG +
Preference number: 5 (lower is better)
Translates to: HDAPLSGSLNPGSPP*CPALSRPDSASPLE
Trigger: CTCGAGAGGAGAAGCTGAGTCAGGACGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGGTTTAGAGACCCTGAGAGGGGAGCATCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2
CDS-3UTR CAA 90 bp GATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGCTTCATCCAGGGAGTCTTaGGGGACATCACCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: DKREAGGGPGIPWTERRASSRES*GTSPFS
Trigger: GGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGA...AGCCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGAGAACAGCCAGATTGTaGAGGGTCGCAGCCACAGCT +
Preference number: 5 (lower is better)
Translates to: WIRERQVVAREYRGLRGGRTARL*RVAATA
Trigger: AGCTGTGGCTGCGACCCTCAACAATCTGGCTGTTCT...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp CCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGGCGTTGGTCTTCGCCACATaGGGGTCATCAGGACCAAGG +
Preference number: 5 (lower is better)
Translates to: PSYCVGGRGTSEAEARMALVFAT*GSSGPR
Trigger: CCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAA...CGCCATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GGTAGACAGGCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTCTTCGCAGAGTGGTGTaGACTGTGGGACTGTCAACT +
Preference number: 5 (lower is better)
Translates to: GRQATTPTGPELREERPPLRRVV*TVGLST
Trigger: AGTTGACAGTCCCACAGTCAACACCACTCTGCGAAG...AGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGCCTGTCTACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGCAGGTCCGACTCAGATaGAGGCCCAGCCACATCTCT +
Preference number: 5 (lower is better)
Translates to: STGPCGVRVWAFARWSGTQVRLR*RPSHIS
Trigger: AGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTG...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 90 bp GATGCTCCCCTCTCAGGGTCTCTAAACCCTGGATCACCGCCTTGGTaGCCAGCACTATCTCGTCCTGACTCAGCTTCTCCTCTCGAGGAA +
Preference number: 5 (lower is better)
Translates to: DAPLSGSLNPGSPPW*PALSRPDSASPLEE
Trigger: TTCCTCGAGAGGAGAAGCTGAGTCAGGACGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGGTTTAGAGACCCTGAGAGGGGAGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2
CDS GCA 90 bp ACTCCTCCAGGTCCGACTCAGATTGAGGCCCAGCCACATCTCTGCTaGCACGGCGGTGTCCTCGTCCACCACTGCCATCTTTTAACAGTT +
Preference number: 5 (lower is better)
Translates to: TPPGPTQIEAQPHLC*HGGVLVHHCHLLTV
Trigger: AACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 90 bp GTCCACCACTGCCATCTTTTAACAGTTCTACCACCTTGGTCTGGCTaGCAGGATCCAGGCCCTGTTTGCGGCTGCGGCTGGCACAGTCTT +
Preference number: 5 (lower is better)
Translates to: VHHCHLLTVLPPWSG*QDPGPVCGCGWHSL
Trigger: AAGACTGTGCCAGCCGCAGCCGCAAACAGGGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGTCATCCAGGGAGTCTTaGGGGACATCACCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: STGPCGVRVWAFARWSGTSSRES*GTSPFS
Trigger: GGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGA...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GGGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTTCATCCAGGGAGTCTTaGGGGACATCACCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: GTSEAEARMAWQDGSMGCSSRES*GTSPFS
Trigger: GGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGA...ACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGTTGGTCTTCGCCACATaGGGGTCATCAGGACCAAGG +
Preference number: 5 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGLVFAT*GSSGPR
Trigger: CCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAA...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGCCCCTCCTACTGTGTGGGAGGAAGGGGGACATCAGAAGCTGAGGCAAGGATGAACAGTTCTACCACCTaGGTCTGGCTGGCAGGATCC +
Preference number: 5 (lower is better)
Translates to: SPSYCVGGRGTSEAEARMNSSTT*VWLAGS
Trigger: GGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTT...CATCCTTGCCTCAGCTTCTGATGTCCCCCTTCCTCCCACACAGTAGGAGGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGAACAGTTCTACCACCTaGGTCTGGCTGGCAGGATCC +
Preference number: 5 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVNSSTT*VWLAGS
Trigger: GGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTT...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCAGAACAGCCAGATTGTaGAGGGTCGCAGCCACAGCT +
Preference number: 5 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSRTARL*RVAATA
Trigger: AGCTGTGGCTGCGACCCTCAACAATCTGGCTGTTCT...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGCTTCGCAGAGTGGTGTaGACTGTGGGACTGTCAACT +
Preference number: 5 (lower is better)
Translates to: STGPCGVRVWAFARWSGTLRRVV*TVGLST
Trigger: AGTTGACAGTCCCACAGTCAACACCACTCTGCGAAG...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GGACATCAGAAGCTGAGGCAAGGATGGCGTGGCAGGATGGCTCAATGGGCTGTGCTTCGCAGAGTGGTGTaGACTGTGGGACTGTCAACT +
Preference number: 5 (lower is better)
Translates to: GHQKLRQGWRGRMAQWAVLRRVV*TVGLST
Trigger: AGTTGACAGTCCCACAGTCAACACCACTCTGCGAAG...CACAGCCCATTGAGCCATCCTGCCACGCCATCCTTGCCTCAGCTTCTGATGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp ACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCAGGTCCGACTCAGATaGAGGCCCAGCCACATCTCT +
Preference number: 5 (lower is better)
Translates to: TGPCGVRVWAFARWSGTNQVRLR*RPSHIS
Trigger: AGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTG...ATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 90 bp GCTCAAAGTGCGGCTGTCAGAAAGACCCGTGCCTCCAGGCTGGACTaGCTCTTCCACACTCTTGTTAAGGAAGTTAAGAGAGCTGGCCCT +
Preference number: 5 (lower is better)
Translates to: AQSAAVRKTRASRLD*LFHTLVKEVKRAGP
Trigger: AGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAGCCTGGAGGCACGGGTCTTTCTGACAGCCGCACTTTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGCCCTGGATCACCGCCTaGGTGCCCAGCACTATCTCG +
Preference number: 5 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLPWITA*VPSTIS
Trigger: CGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGG...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp TGGATAAGAGAGAGGCAGGTGGTGGCCCGGGAATACCGTGGACTGAGAGGAGGGTCAACTTTACAGGCTTaGTACCAGCTGCCATACTCC +
Preference number: 5 (lower is better)
Translates to: WIRERQVVAREYRGLRGGSTLQA*YQLPYS
Trigger: GGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGA...CCCTCCTCTCAGTCCACGGTATTCCCGGGCCACCACCTGCCTCTCTCTTATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp CCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGAATCCCTCCCTTCGCAGAGTGGTGTaGACTGTGGGACTGTCAACT +
Preference number: 5 (lower is better)
Translates to: PCGVRVWAFARWSGTNPSLRRVV*TVGLST
Trigger: AGTTGACAGTCCCACAGTCAACACCACTCTGCGAAG...GGAGGGATTCGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCCACCACTCCCACAGGCCCTGAACTCAGGGAAGAAAGGCCCCCTGCTGGAAGAGGCTCTTCCACACTCTaGTTAAGGAAGTTAAGAGAG +
Preference number: 5 (lower is better)
Translates to: ATTPTGPELREERPPAGRGSSTL*LRKLRE
Trigger: CTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCC...TCTTCCAGCAGGGGGCCTTTCTTCCCTGAGTTCAGGGCCTGTGGGAGTGGTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 90 bp CAGATGGGCTTGTTCTCTCCATTGACTGAGCCAAACTCCTTCTCGTaGGCACGGGTAAGGATCTCCTTGTACAGGGTCTCTGCATCCTGG +
Preference number: 5 (lower is better)
Translates to: QMGLFSPLTEPNSFS*ARVRISLYRVSASW
Trigger: CCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAAGCCCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp GCTGGAAGAATAAATAAGGAGCAGAGCTGGAGCCGGCAGGACCGTCCTCCAGGGTCAACTTTACAGGCTTaGTACCAGCTGCCATACTCC +
Preference number: 5 (lower is better)
Translates to: AGRINKEQSWSRQDRPPGSTLQA*YQLPYS
Trigger: GGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGA...CCCTGGAGGACGGTCCTGCCGGCTCCAGCTCTGCTCCTTATTTATTCTTCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp ACTTATTTCTCTATATACAGAAGCAACGGCCGGGAGTGGAGGGCAAAGGTGCTGCAGGTCCGACTCAGATaGAGGCCCAGCCACATCTCT +
Preference number: 5 (lower is better)
Translates to: TYFSIYRSNGREWRAKVLQVRLR*RPSHIS
Trigger: AGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTG...CAGCACCTTTGCCCTCCACTCCCGGCCGTTGCTTCTGTATATAGAGAAATAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGCACAGGGCCCTGTGGTGTGAGGGTCTGGGCATTTGCAAGATGGAGTGGAACGGGCTCTTCCACACTCTaGTTAAGGAAGTTAAGAGAG +
Preference number: 5 (lower is better)
Translates to: STGPCGVRVWAFARWSGTGSSTL*LRKLRE
Trigger: CTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCC...CGTTCCACTCCATCTTGCAAATGCCCAGACCCTCACACCACAGGGCCCTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS-3UTR CAA 90 bp AGATACCACCACTGGGAACGGGGTGATTTAAGGCCTGGGCGGTACCACTGGATATCAACTTTACAGGCTTaGTACCAGCTGCCATACTCC +
Preference number: 5 (lower is better)
Translates to: RYHHWERGDLRPGRYHWISTLQA*YQLPYS
Trigger: GGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGA...TATCCAGTGGTACCGCCCAGGCCTTAAATCACCCCGTTCCCAGTGGTGGTATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 72 bp CTCCAGGGAGCGGCGCAGGAGGAGGCAGCGCTCCTGTaGGCCCGGCTCGGCCTCGCCTGCTTCATGAGAAGC +
Preference number: 6 (lower is better)
Translates to: LQGAAQEEAALL*ARLGLACFMRS
Trigger: GCTTCTCATGAAGCAGGCGAGGCCGAGCCGGGCTCACAGGAGCGCTGCCTCCTCCTGCGCCGCTCCCTGGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2
CDS CAA 90 bp CGGCTGCGGCTGGCACAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTaGCCCTGGCGCCGGTACAGGGCGCCCAAGCTTCGCAGAGTGGTG +
Preference number: 6 (lower is better)
Translates to: RLRLAQSSSVCAASS*PWRRYRAPKLRRVV
Trigger: CACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 72 bp CGCTCCTGTGAGCCCGGCTCGGCCTCGCCTGCTTCATaGGAAGCTAGGGGAGCTAGCAGGGCACGATGCTCC +
Preference number: 6 (lower is better)
Translates to: RSCEPGSASPAS*EARGASRARCS
Trigger: GGAGCATCGTGCCCTGCTAGCTCCCCTAGCTTCTCATGAAGCAGGCGAGGCCGAGCCGGGCTCACAGGAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2
CDS GCA 72 bp TTTGCGGCTGCGGCTGGCACAGTCTTCCAGTGTGTGTaGGGCTTCCAGCTTGCCCTGGCGCCGGTACAGGGC +
Preference number: 6 (lower is better)
Translates to: FAAAAGTVFQCV*GFQLALAPVQG
Trigger: GCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CAA 72 bp CTGGCACAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTaGCCCTGGCGCCGGTACAGGGCGCCCAAGCTTCGC +
Preference number: 6 (lower is better)
Translates to: LAQSSSVCAASS*PWRRYRAPKLR
Trigger: GCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 72 bp GCTGCAGGCCCTGACTCCTCCAGGTCCGACTCAGATTaGGGCCCAGCCACATCTCTGCTGCCACGGCGGTGT +
Preference number: 6 (lower is better)
Translates to: AAGPDSSRSDSD*GPATSLLPRRC
Trigger: ACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 72 bp TGGCACAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTTaGCCTGGCGCCGGTACAGGGCGCCCAAGCTTCGCA +
Preference number: 6 (lower is better)
Translates to: WHSLPVCVRLPA*PGAGTGRPSFA
Trigger: TGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 72 bp CAGTCTTCCAGTGTGTGTGCGGCTTCCAGCTTGCCCTaGCGCCGGTACAGGGCGCCCAAGCTTCGCAGAGTG +
Preference number: 6 (lower is better)
Translates to: QSSSVCAASSLP*RRYRAPKLRRV
Trigger: CACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 72 bp GGTCCGACTCAGATTGAGGCCCAGCCACATCTCTGCTaGCACGGCGGTGTCCTCGTCCACCACTGCCATCTT +
Preference number: 6 (lower is better)
Translates to: GPTQIEAQPHLC*HGGVLVHHCHL
Trigger: AAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CCA 72 bp GAGAACAGCCAGATTGTTGAGGGTCGCAGCCACAGCTaGGTGGTCCTTGCCCAGTGTCTTTTCCCGGATAGC +
Preference number: 6 (lower is better)
Translates to: ENSQIVEGRSHS*VVLAQCLFPDS
Trigger: GCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACCCTCAACAATCTGGCTGTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CAA 72 bp AGATTGTTGAGGGTCGCAGCCACAGCTGGGTGGTCCTaGCCCAGTGTCTTTTCCCGGATAGCCAGGGCATCA +
Preference number: 6 (lower is better)
Translates to: RLLRVAATAGWS*PSVFSRIARAS
Trigger: TGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACCCTCAACAATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 72 bp GCCGGTACAGGGCGCCCAAGCTTCGCAGAGTGGTGTTaGCTGTGGGACTGTCAACTTTACAGGCTTTGTACC +
Preference number: 6 (lower is better)
Translates to: AGTGRPSFAEWC*LWDCQLYRLCT
Trigger: GGTACAAAGCCTGTAAAGTTGACAGTCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 72 bp CTCTCAGGGTCTCTAAACCCTGGATCACCGCCTTGGTaGCCAGCACTATCTCGTCCTGACTCAGCTTCTCCT +
Preference number: 6 (lower is better)
Translates to: LSGSLNPGSPPW*PALSRPDSASP
Trigger: AGGAGAAGCTGAGTCAGGACGAGATAGTGCTGGGCACCAAGGCGGTGATCCAGGGTTTAGAGACCCTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2
CDS GCA 72 bp CATCTCTGCTGCCACGGCGGTGTCCTCGTCCACCACTaGCATCTTTTAACAGTTCTACCACCTTGGTCTGGC +
Preference number: 6 (lower is better)
Translates to: HLCCHGGVLVHH*HLLTVLPPWSG
Trigger: GCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS CAA 72 bp CCAAACTCCTTCTCGTGCGCACGGGTAAGGATCTCCTaGTACAGGGTCTCTGCATCCTGGTACTTGCCCTGT +
Preference number: 6 (lower is better)
Translates to: PNSFSCARVRIS*YRVSASWYLPC
Trigger: ACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS GCA 72 bp TTGTTCTCTCCATTGACTGAGCCAAACTCCTTCTCGTaGGCACGGGTAAGGATCTCCTTGTACAGGGTCTCT +
Preference number: 6 (lower is better)
Translates to: LFSPLTEPNSFS*ARVRISLYRVS
Trigger: AGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATGGAGAGAACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
CDS TCA 72 bp TCATTTGGGGAAGCATCCTCATCCAGCTTTCGGATCTaGCTCATGAATAGCAGGTGCTGCTTCTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: SFGEASSSSFRI*LMNSRCCFSSS
Trigger: GGAGGAAGAGAAGCAGCACCTGCTATTCATGAGTCAGATCCGAAAGCTGGATGAGGATGCTTCCCCAAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025798.13
ENSMUST00000113727.8
ENSMUST00000113728.8
ENSMUST00000116563.8
ENSMUST00000156717.2