Pregenerated sensors for KITL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019966Ensembl transcript IDs: ENSMUST00000020129.8, ENSMUST00000105283.9, ENSMUST00000130190.8, ENSMUST00000218200.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCACTCAGACGTTTCCCAAGCCATGCAAACGGTGCAAGTAGACTaGACACATGTTCTTGTCCCTATCATCACTTGCAAAACCTCCAGA | + |
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Preference number: 1 (lower is better) Translates to: QHSDVSQAMQTVQVD*THVLVPIITCKTSR Trigger: TCTGGAGGTTTTGCAAGTGATGATAGGGACAAGAACATGTGTCCAGTCTACTTGCACCGTTTGCATGGCTTGGGAAACGTCTGAGTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CCA 90 bp | ATATGCCGTGGTATTATGCTGCAGTTCAGCATGGGCTCCACCGCATaGATAGAACTAGCTACCCATGTCCATTTCTCTAGTAGGATACGG | + |
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Preference number: 1 (lower is better) Translates to: ICRGIMLQFSMGSTA*IELATHVHFSSRIR Trigger: CCGTATCCTACTAGAGAAATGGACATGGGTAGCTAGTTCTATCCATGCGGTGGAGCCCATGCTGAACTGCAGCATAATACCACGGCATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 90 bp | ATAATTCAGTGCAGGGTTCACAGCGAAGCACTCTGCTCCAACAACTaGATCATCCACACAAGGTCACGGGTAGCAAGAACAGGTAAGGAT | + |
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Preference number: 1 (lower is better) Translates to: IIQCRVHSEALCSNN*IIHTRSRVARTGKD Trigger: ATCCTTACCTGTTCTTGCTACCCGTGACCTTGTGTGGATGATTCAGTTGTTGGAGCAGAGTGCTTCGCTGTGAACCCTGCACTGAATTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR TCA 90 bp | CAAACACGATTTACACACGCTAGAGTGACTGTCAAGGGAAAAGACTaGCTTCACGATGGGCCAAATGTCTTCCTTGGCATGTTCTTCCAC | + |
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Preference number: 1 (lower is better) Translates to: QTRFTHARVTVKGKD*LHDGPNVFLGMFFH Trigger: GTGGAAGAACATGCCAAGGAAGACATTTGGCCCATCGTGAAGTCAGTCTTTTCCCTTGACAGTCACTCTAGCGTGTGTAAATCGTGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CCA 90 bp | TCTTTGGTACAAAGAAGAGCAGCCACCATGTACTGGAGTCGTACTTaGACAAGCTTGGAACGTAAGCTAGAACTTTACATGCAGCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: SLVQRRAATMYWSRT*TSLERKLELYMQPQ Trigger: TTGAGGCTGCATGTAAAGTTCTAGCTTACGTTCCAAGCTTGTCCAAGTACGACTCCAGTACATGGTGGCTGCTCTTCTTTGTACCAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR GCA 90 bp | TCTTGTCCCTATCATCACTTGCAAAACCTCCAGAGTCCTGCTCCGTaGAGATTTTTCTTTACAGATGATAATTCAGTGCAGGGTTCACAG | + |
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Preference number: 1 (lower is better) Translates to: SCPYHHLQNLQSPAP*RFFFTDDNSVQGSQ Trigger: CTGTGAACCCTGCACTGAATTATCATCTGTAAAGAAAAATCTGCACGGAGCAGGACTCTGGAGGTTTTGCAAGTGATGATAGGGACAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR TCA 90 bp | CATGTCACATTATACTATTGCAAACACGATTTACACACGCTAGAGTaGCTGTCAAGGGAAAAGACTGACTTCACGATGGGCCAAATGTCT | + |
|
Preference number: 1 (lower is better) Translates to: HVTLYYCKHDLHTLE*LSREKTDFTMGQMS Trigger: AGACATTTGGCCCATCGTGAAGTCAGTCTTTTCCCTTGACAGTCACTCTAGCGTGTGTAAATCGTGTTTGCAATAGTATAATGTGACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 90 bp | CAGAATGGGAATTTGTTTAAGGCTGCTTCATTTATGAAGCAAACATaGACTGTTACCAGCCACTGTGCGAAGGTAACAATGTTGATACGT | + |
|
Preference number: 1 (lower is better) Translates to: QNGNLFKAASFMKQT*TVTSHCAKVTMLIR Trigger: ACGTATCAACATTGTTACCTTCGCACAGTGGCTGGTAACAGTTCATGTTTGCTTCATAAATGAAGCAGCCTTAAACAAATTCCCATTCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 ENSMUST00000218200.2 |
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| 3UTR CAA 90 bp | CAGTGTCTCGGTGCACTGGGCTTCATTATTGCAGACCTGATAGCATaGGAGGAACATCAGAGCATTAGAGAAGGAACTAGAGACCATCTG | + |
|
Preference number: 2 (lower is better) Translates to: QCLGALGFIIADLIA*EEHQSIREGTRDHL Trigger: CAGATGGTCTCTAGTTCCTTCTCTAATGCTCTGATGTTCCTCCAATGCTATCAGGTCTGCAATAATGAAGCCCAGTGCACCGAGACACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR GCA 90 bp | ATCATCCACACAAGGTCACGGGTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTGTTACCAGCCACTGTaGGAAGGTAACAATGTTGAT | + |
|
Preference number: 2 (lower is better) Translates to: IIHTRSRVARTGKDEVCHCYQPL*EGNNVD Trigger: ATCAACATTGTTACCTTCGCACAGTGGCTGGTAACA...GTGACAGACCTCATCCTTACCTGTTCTTGCTACCCGTGACCTTGTGTGGATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 90 bp | AACGGTGCAAGTAGACTGGACACATGTTCTTGTCCCTATCATCACTaGCAAAACCTCCAGAGTCCTGCTCCGTGCAGATTTTTCTTTACA | + |
|
Preference number: 2 (lower is better) Translates to: NGASRLDTCSCPYHH*QNLQSPAPCRFFFT Trigger: TGTAAAGAAAAATCTGCACGGAGCAGGACTCTGGAGGTTTTGCAAGTGATGATAGGGACAAGAACATGTGTCCAGTCTACTTGCACCGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 90 bp | GATGGGCCAAATGTCTTCCTTGGCATGTTCTTCCACTGGTCCACGTaGACAATTTTCTCCTGTAAGGACTTTTCTGGAGAGTCTTCCATA | + |
|
Preference number: 2 (lower is better) Translates to: DGPNVFLGMFFHWST*TIFSCKDFSGESSI Trigger: TATGGAAGACTCTCCAGAAAAGTCCTTACAGGAGAAAATTGTCAACGTGGACCAGTGGAAGAACATGCCAAGGAAGACATTTGGCCCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CAA 90 bp | GAACATCAGAGCATTAGAGAAGGAACTAGAGACCATCTGAACTCTTaGGTACAAAGAAGAGCAGCCACCATGTACTGGAGTCGTACTTGG | + |
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Preference number: 2 (lower is better) Translates to: EHQSIREGTRDHLNS*VQRRAATMYWSRTW Trigger: CCAAGTACGACTCCAGTACATGGTGGCTGCTCTTCTTTGTACCAAAGAGTTCAGATGGTCTCTAGTTCCTTCTCTAATGCTCTGATGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR TCA 90 bp | ATCATCCACACAAGGTCACGGGTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTTTATGAAGCAAACATaGACTGTTACCAGCCACTGT | + |
|
Preference number: 2 (lower is better) Translates to: IIHTRSRVARTGKDEVCHFMKQT*TVTSHC Trigger: ACAGTGGCTGGTAACAGTTCATGTTTGCTTCATAAA...GTGACAGACCTCATCCTTACCTGTTCTTGCTACCCGTGACCTTGTGTGGATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR-3UTR TCA 90 bp | TTCACAGCGAAGCACTCTGCTCCAACAACTGAATCATCCACACAAGGTCACGGGAGGCTGCTTCATTTATaGAGCAAACATGAACTGTTA | + |
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Preference number: 2 (lower is better) Translates to: FTAKHSAPTTESSTQGHGRLLHL*SKHELL Trigger: TAACAGTTCATGTTTGCTTCATAAATGAAGCAGCCT...CCCGTGACCTTGTGTGGATGATTCAGTTGTTGGAGCAGAGTGCTTCGCTGTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR-3UTR CCA 90 bp | CATTCCTCAAAGATGATCCCAAACGCTCGTTTGAGCAAAGGTAAAAGCCATCTCGCCAAATGTCTTCCTTaGCATGTTCTTCCACTGGTC | + |
|
Preference number: 2 (lower is better) Translates to: HSSKMIPNARLSKGKSHLAKCLP*HVLPLV Trigger: GACCAGTGGAAGAACATGCCAAGGAAGACATTTGGC...GAGATGGCTTTTACCTTTGCTCAAACGAGCGTTTGGGATCATCTTTGAGGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CAA 90 bp | TGCACGACCGCTTTTCATTCCTCAAAGATGATCCCAAACGCTCGTTaGAGCAAAGGTAAAAGCCATCTCATGTGTAGTTACCCAATCCAT | + |
|
Preference number: 2 (lower is better) Translates to: CTTAFHSSKMIPNAR*SKGKSHLMCSYPIH Trigger: ATGGATTGGGTAACTACACATGAGATGGCTTTTACCTTTGCTCAAACGAGCGTTTGGGATCATCTTTGAGGAATGAAAAGCGGTCGTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR CCA 90 bp | CATTCCTCAAAGATGATCCCAAACGCTCGTTTGAGCAAAGGTAAAAGCCATCTCACTGAAGAACAAAGCTaGGTGGGTTTTCAGCACTCA | + |
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Preference number: 2 (lower is better) Translates to: HSSKMIPNARLSKGKSHLTEEQS*VGFQHS Trigger: TGAGTGCTGAAAACCCACCCAGCTTTGTTCTTCAGT...GAGATGGCTTTTACCTTTGCTCAAACGAGCGTTTGGGATCATCTTTGAGGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CAA 90 bp | ACAAGGTCACGGGTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTaGAGACAGAATGGGAATTTGTTTAAGGCTGCTTCATTTATGAAG | + |
|
Preference number: 2 (lower is better) Translates to: TRSRVARTGKDEVCH*RQNGNLFKAASFMK Trigger: CTTCATAAATGAAGCAGCCTTAAACAAATTCCCATTCTGTCTCAAGTGACAGACCTCATCCTTACCTGTTCTTGCTACCCGTGACCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 90 bp | AACACAACACTGAGATCCAAAGAGAGCGGGGAACATTATATCCGTTaGTGGCAAAGTAGAACAAACTCCTGGCTACCTTTCTCAATGTTC | + |
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Preference number: 2 (lower is better) Translates to: NTTLRSKESGEHYIR*WQSRTNSWLPFSMF Trigger: GAACATTGAGAAAGGTAGCCAGGAGTTTGTTCTACTTTGCCACAAACGGATATAATGTTCCCCGCTCTCTTTGGATCTCAGTGTTGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR TCA 90 bp | AATCTACTTGCAGAGACCATAATTAACGACAGGCTGCAGGTTGTGACTGAAGAAATGAGGTCTGTCACTTaGGACAGAATGGGAATTTGT | + |
|
Preference number: 2 (lower is better) Translates to: NLLAETIINDRLQVVTEEMRSVT*DRMGIC Trigger: ACAAATTCCCATTCTGTCTCAAGTGACAGACCTCAT...TTCTTCAGTCACAACCTGCAGCCTGTCGTTAATTATGGTCTCTGCAAGTAGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR-3UTR TCA 90 bp | CCCATGGCTTTCAACTCCATACAGTGGCTGATGCTACGGAGTTATTGTTTTGTTAGGCTGCTTCATTTATaGAGCAAACATGAACTGTTA | + |
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Preference number: 2 (lower is better) Translates to: PMAFNSIQWLMLRSYCFVRLLHL*SKHELL Trigger: TAACAGTTCATGTTTGCTTCATAAATGAAGCAGCCT...AACAAAACAATAACTCCGTAGCATCAGCCACTGTATGGAGTTGAAAGCCATGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR CCA 90 bp | ATGAGTGACTTAGTTTGCAACTCCCGTATTAGAATAAAGTGTCCATTTCTAATCTTCAACTCCATACAGTaGCTGATGCTACGGAGTTAT | + |
|
Preference number: 2 (lower is better) Translates to: MSDLVCNSRIRIKCPFLIFNSIQ*LMLRSY Trigger: ATAACTCCGTAGCATCAGCCACTGTATGGAGTTGAA...GATTAGAAATGGACACTTTATTCTAATACGGGAGTTGCAAACTAAGTCACTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCAAGAGATAACGGTTATACTGCAAATAACTAATGTTTTCCGAGTCCTTGCATTTATGAAGCAAACATaGACTGTTACCAGCCACTGT | + |
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Preference number: 2 (lower is better) Translates to: FQEITVILQITNVFRVLAFMKQT*TVTSHC Trigger: ACAGTGGCTGGTAACAGTTCATGTTTGCTTCATAAA...TGCAAGGACTCGGAAAACATTAGTTATTTGCAGTATAACCGTTATCTCTTGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | TGCAGGGTTCACAGCGAAGCACTCTGCTCCAACAACTaGATCATCCACACAAGGTCACGGGTAGCAAGAACA | + |
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Preference number: 3 (lower is better) Translates to: CRVHSEALCSNN*IIHTRSRVART Trigger: TGTTCTTGCTACCCGTGACCTTGTGTGGATGATTCAGTTGTTGGAGCAGAGTGCTTCGCTGTGAACCCTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR GCA 72 bp | TTACTAACCAGTTGTGTCCTGGAATGTCTGAGGGCTTaGACAAGCAAATCCAGTGTCTCGGTGCACTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: LLTSCVLECLRA*TSKSSVSVHWA Trigger: AGCCCAGTGCACCGAGACACTGGATTTGCTTGTGCAAGCCCTCAGACATTCCAGGACACAACTGGTTAGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR CAA 90 bp | TTCACAGCGAAGCACTCTGCTCCAACAACTGAATCATCCACACAAGGTCACGGGGATGAGGTCTGTCACTaGAGACAGAATGGGAATTTG | + |
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Preference number: 3 (lower is better) Translates to: FTAKHSAPTTESSTQGHGDEVCH*RQNGNL Trigger: CAAATTCCCATTCTGTCTCAAGTGACAGACCTCATC...CCCGTGACCTTGTGTGGATGATTCAGTTGTTGGAGCAGAGTGCTTCGCTGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR GCA 72 bp | TTCTCCTGTAAGGACTTTTCTGGAGAGTCTTCCATATaGCGTGGTATTATGCTGCAGTTCAGCATGGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: FSCKDFSGESSI*RGIMLQFSMGS Trigger: GGAGCCCATGCTGAACTGCAGCATAATACCACGGCATATGGAAGACTCTCCAGAAAAGTCCTTACAGGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR CAA 90 bp | ACTCTGCTCCAACAACTGAATCATCCACACAAGGTCACGGGTAGCAAGAACAGGGATGAGGTCTGTCACTaGAGACAGAATGGGAATTTG | + |
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Preference number: 3 (lower is better) Translates to: TLLQQLNHPHKVTGSKNRDEVCH*RQNGNL Trigger: CAAATTCCCATTCTGTCTCAAGTGACAGACCTCATC...CCTGTTCTTGCTACCCGTGACCTTGTGTGGATGATTCAGTTGTTGGAGCAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | TTTACACACGCTAGAGTGACTGTCAAGGGAAAAGACTaGCTTCACGATGGGCCAAATGTCTTCCTTGGCATG | + |
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Preference number: 3 (lower is better) Translates to: FTHARVTVKGKD*LHDGPNVFLGM Trigger: CATGCCAAGGAAGACATTTGGCCCATCGTGAAGTCAGTCTTTTCCCTTGACAGTCACTCTAGCGTGTGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CCA 72 bp | GACGTTTCCCAAGCCATGCAAACGGTGCAAGTAGACTaGACACATGTTCTTGTCCCTATCATCACTTGCAAA | + |
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Preference number: 3 (lower is better) Translates to: DVSQAMQTVQVD*THVLVPIITCK Trigger: TTTGCAAGTGATGATAGGGACAAGAACATGTGTCCAGTCTACTTGCACCGTTTGCATGGCTTGGGAAACGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CCA 72 bp | GATGGGCCAAATGTCTTCCTTGGCATGTTCTTCCACTaGTCCACGTTGACAATTTTCTCCTGTAAGGACTTT | + |
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Preference number: 3 (lower is better) Translates to: DGPNVFLGMFFH*STLTIFSCKDF Trigger: AAAGTCCTTACAGGAGAAAATTGTCAACGTGGACCAGTGGAAGAACATGCCAAGGAAGACATTTGGCCCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | ATGTCTTCCTTGGCATGTTCTTCCACTGGTCCACGTTaGCAATTTTCTCCTGTAAGGACTTTTCTGGAGAGT | + |
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Preference number: 3 (lower is better) Translates to: MSSLACSSTGPR*QFSPVRTFLES Trigger: ACTCTCCAGAAAAGTCCTTACAGGAGAAAATTGTCAACGTGGACCAGTGGAAGAACATGCCAAGGAAGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CCA 72 bp | AAAAGACTGACTTCACGATGGGCCAAATGTCTTCCTTaGCATGTTCTTCCACTGGTCCACGTTGACAATTTT | + |
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Preference number: 3 (lower is better) Translates to: KRLTSRWAKCLP*HVLPLVHVDNF Trigger: AAAATTGTCAACGTGGACCAGTGGAAGAACATGCCAAGGAAGACATTTGGCCCATCGTGAAGTCAGTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CCA 72 bp | AGATCCAAAGAGAGCGGGGAACATTATATCCGTTTGTaGCAAAGTAGAACAAACTCCTGGCTACCTTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: RSKESGEHYIRL*QSRTNSWLPFS Trigger: TGAGAAAGGTAGCCAGGAGTTTGTTCTACTTTGCCACAAACGGATATAATGTTCCCCGCTCTCTTTGGATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | TTATACTATTGCAAACACGATTTACACACGCTAGAGTaGCTGTCAAGGGAAAAGACTGACTTCACGATGGGC | + |
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Preference number: 3 (lower is better) Translates to: LYYCKHDLHTLE*LSREKTDFTMG Trigger: GCCCATCGTGAAGTCAGTCTTTTCCCTTGACAGTCACTCTAGCGTGTGTAAATCGTGTTTGCAATAGTATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | AACATCAGAGCATTAGAGAAGGAACTAGAGACCATCTaGACTCTTTGGTACAAAGAAGAGCAGCCACCATGT | + |
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Preference number: 3 (lower is better) Translates to: NIRALEKELETI*TLWYKEEQPPC Trigger: ACATGGTGGCTGCTCTTCTTTGTACCAAAGAGTTCAGATGGTCTCTAGTTCCTTCTCTAATGCTCTGATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR GCA 72 bp | TATCATCACTTGCAAAACCTCCAGAGTCCTGCTCCGTaGAGATTTTTCTTTACAGATGATAATTCAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: YHHLQNLQSPAP*RFFFTDDNSVQ Trigger: CTGCACTGAATTATCATCTGTAAAGAAAAATCTGCACGGAGCAGGACTCTGGAGGTTTTGCAAGTGATGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR-3UTR CAA 90 bp | TGGTTAGAGGTGGTGGAAACCATCAAAGATTACACAACAGATTTTTCCATTCATGACCATCTGAACTCTTaGGTACAAAGAAGAGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: WLEVVETIKDYTTDFSIHDHLNS*VQRRAA Trigger: GGCTGCTCTTCTTTGTACCAAAGAGTTCAGATGGTC...ATGAATGGAAAAATCTGTTGTGTAATCTTTGATGGTTTCCACCACCTCTAACCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR-3UTR CAA 90 bp | ATGAGTGACTTAGTTTGCAACTCCCGTATTAGAATAAAGTGTCCATTTCTAATCTTCCACTGGTCCACGTaGACAATTTTCTCCTGTAAG | + |
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Preference number: 3 (lower is better) Translates to: MSDLVCNSRIRIKCPFLIFHWST*TIFSCK Trigger: CTTACAGGAGAAAATTGTCAACGTGGACCAGTGGAA...GATTAGAAATGGACACTTTATTCTAATACGGGAGTTGCAAACTAAGTCACTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | GCTCAGTGTGGAATCACTGCCAATTTCTGTCTAATATaGGAAATGCTGTCACACGTTTTAAATAGCAAACTG | + |
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Preference number: 3 (lower is better) Translates to: AQCGITANFCLI*EMLSHVLNSKL Trigger: CAGTTTGCTATTTAAAACGTGTGACAGCATTTCTCATATTAGACAGAAATTGGCAGTGATTCCACACTGAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR TCA 72 bp | TTCTCATTGTCTAACCTATTGTTCAGAAGCCAGAGCTaGGTACTTTGCTATGGATTCTTTTTGCTGTTTTTC | + |
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Preference number: 3 (lower is better) Translates to: FSLSNLLFRSQS*VLCYGFFLLFF Trigger: GAAAAACAGCAAAAAGAATCCATAGCAAAGTACTCAGCTCTGGCTTCTGAACAATAGGTTAGACAATGAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CAA 72 bp | GTTACTAACCAGTTGTGTCCTGGAATGTCTGAGGGCTaGCACAAGCAAATCCAGTGTCTCGGTGCACTGGGC | + |
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Preference number: 4 (lower is better) Translates to: VTNQLCPGMSEG*HKQIQCLGALG Trigger: GCCCAGTGCACCGAGACACTGGATTTGCTTGTGCAAGCCCTCAGACATTCCAGGACACAACTGGTTAGTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| CDS-3UTR CCA 90 bp | GTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTTGAGACAGAATGGGAATTTGGAGCCGGCAATGCCATaGCTGTCCATTGTAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: VARTGKDEVCHLRQNGNLEPAMP*LSIVGP Trigger: CGGGCCTACAATGGACAGCCATGGCATTGCCGGCTC...CAAATTCCCATTCTGTCTCAAGTGACAGACCTCATCCTTACCTGTTCTTGCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CCA 90 bp | CGTGCAGATTTTTCTTTACAGATGATAATTCAGTGCAGGGTTCACAGCGAAGCAGAGCCGGCAATGCCATaGCTGTCCATTGTAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: RADFSLQMIIQCRVHSEAEPAMP*LSIVGP Trigger: CGGGCCTACAATGGACAGCCATGGCATTGCCGGCTC...TGCTTCGCTGTGAACCCTGCACTGAATTATCATCTGTAAAGAAAAATCTGCACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 72 bp | GGGAGGACATCTACAGCACATCCTCTAAATTCTGGTTaGAAAGCGCGATGCTCAGTGTGGAATCACTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GRTSTAHPLNSG*KARCSVWNHCQ Trigger: TTGGCAGTGATTCCACACTGAGCATCGCGCTTTCAAACCAGAATTTAGAGGATGTGCTGTAGATGTCCTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| CDS-3UTR TCA 90 bp | ATCCACACAAGGTCACGGGTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTTGTCCCAAGTTTGTCTATaGTGGAGTAATTACTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: IHTRSRVARTGKDEVCHLSQVCL*WSNYSS Trigger: GCTTGAGTAATTACTCCATCATAGACAAACTTGGGA...CAAGTGACAGACCTCATCCTTACCTGTTCTTGCTACCCGTGACCTTGTGTGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 72 bp | GGTGCACTGGGCTTCATTATTGCAGACCTGATAGCATaGGAGGAACATCAGAGCATTAGAGAAGGAACTAGA | + |
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Preference number: 4 (lower is better) Translates to: GALGFIIADLIA*EEHQSIREGTR Trigger: TCTAGTTCCTTCTCTAATGCTCTGATGTTCCTCCAATGCTATCAGGTCTGCAATAATGAAGCCCAGTGCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| 3UTR CAA 72 bp | CTGAGATCCAAAGAGAGCGGGGAACATTATATCCGTTaGTGGCAAAGTAGAACAAACTCCTGGCTACCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LRSKESGEHYIR*WQSRTNSWLPF Trigger: GAAAGGTAGCCAGGAGTTTGTTCTACTTTGCCACAAACGGATATAATGTTCCCCGCTCTCTTTGGATCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| CDS-3UTR GCA 90 bp | ATCATCCACACAAGGTCACGGGTAGCAAGAACAGGTAAGGATGAGGTCTGTCACGTCATTTGGAAGATTTaGCACCAGTTTTGTAATGTC | + |
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Preference number: 4 (lower is better) Translates to: IIHTRSRVARTGKDEVCHVIWKI*HQFCNV Trigger: GACATTACAAAACTGGTGGCAAATCTTCCAAATGAC...GTGACAGACCTCATCCTTACCTGTTCTTGCTACCCGTGACCTTGTGTGGATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 72 bp | AATGTCTTCCTTGGCATGTTCTTCCACTGGTCCACGTaGACAATTTTCTCCTGTAAGGACTTTTCTGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: NVFLGMFFHWST*TIFSCKDFSGE Trigger: CTCTCCAGAAAAGTCCTTACAGGAGAAAATTGTCAACGTGGACCAGTGGAAGAACATGCCAAGGAAGACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| CDS-3UTR TCA 90 bp | ACGGTGCAAGTAGACTGGACACATGTTCTTGTCCCTATCATCACTTGCAAAACCTCCCAAGTTTGTCTATaGTGGAGTAATTACTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: TVQVDWTHVLVPIITCKTSQVCL*WSNYSS Trigger: GCTTGAGTAATTACTCCATCATAGACAAACTTGGGA...GGTTTTGCAAGTGATGATAGGGACAAGAACATGTGTCCAGTCTACTTGCACCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CCA 90 bp | CAGAGTCCTGCTCCGTGCAGATTTTTCTTTACAGATGATAATTCAGTGCAGGGTAAAGGATCTAGTTTCTaGCCTCTTCGGAGATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: QSPAPCRFFFTDDNSVQGKGSSF*PLRRFF Trigger: AAAGAATCTCCGAAGAGGCCAGAAACTAGATCCTTT...ACCCTGCACTGAATTATCATCTGTAAAGAAAAATCTGCACGGAGCAGGACTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| 3UTR CAA 72 bp | GCTTTTCATTCCTCAAAGATGATCCCAAACGCTCGTTaGAGCAAAGGTAAAAGCCATCTCATGTGTAGTTAC | + |
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Preference number: 4 (lower is better) Translates to: AFHSSKMIPNAR*SKGKSHLMCSY Trigger: GTAACTACACATGAGATGGCTTTTACCTTTGCTCAAACGAGCGTTTGGGATCATCTTTGAGGAATGAAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| CDS-3UTR GCA 90 bp | GTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTTGAGACAGAATGGGAATTTGGTCATTTGGAAGATTTaGCACCAGTTTTGTAATGTC | + |
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Preference number: 4 (lower is better) Translates to: VARTGKDEVCHLRQNGNLVIWKI*HQFCNV Trigger: GACATTACAAAACTGGTGGCAAATCTTCCAAATGAC...CAAATTCCCATTCTGTCTCAAGTGACAGACCTCATCCTTACCTGTTCTTGCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CCA 90 bp | ACTTGCAAAACCTCCAGAGTCCTGCTCCGTGCAGATTTTTCTTTACAGATGATAAAAGGATCTAGTTTCTaGCCTCTTCGGAGATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: TCKTSRVLLRADFSLQMIKGSSF*PLRRFF Trigger: AAAGAATCTCCGAAGAGGCCAGAAACTAGATCCTTT...TATCATCTGTAAAGAAAAATCTGCACGGAGCAGGACTCTGGAGGTTTTGCAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CAA 90 bp | CTTGCAGAGACCATAATTAACGACAGGCTGCAGGTTGTGACTGAAGAACAAAGCAGTCTTCAGGGGCCTTaGCGGCTTTCCCTTTCTCGG | + |
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Preference number: 5 (lower is better) Translates to: LAETIINDRLQVVTEEQSSLQGP*RLSLSR Trigger: CCGAGAAAGGGAAAGCCGCAAAGGCCCCTGAAGACT...GCTTTGTTCTTCAGTCACAACCTGCAGCCTGTCGTTAATTATGGTCTCTGCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020129.8 |
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| CDS-3UTR CAA 90 bp | CAGCGAAGCACTCTGCTCCAACAACTGAATCATCCACACAAGGTCACGGGTAGCTTCCCGCAGATCTCCTaGGTTTTGACAAGAGGATTA | + |
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Preference number: 5 (lower is better) Translates to: QRSTLLQQLNHPHKVTGSFPQIS*VLTRGL Trigger: TAATCCTCTTGTCAAAACCAAGGAGATCTGCGGGAA...GCTACCCGTGACCTTGTGTGGATGATTCAGTTGTTGGAGCAGAGTGCTTCGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS TCA 90 bp | TCTTCCAGTATAAGGCTCCAAAAGCAAAGCCAATTACAAGCGAAATaGGAGCCGGCAATGCCATGGCTGTCCATTGTAGGCCCGAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SSSIRLQKQSQLQAK*EPAMPWLSIVGPSL Trigger: AAGACTCGGGCCTACAATGGACAGCCATGGCATTGCCGGCTCTCATTTCGCTTGTAATTGGCTTTGCTTTTGGAGCCTTATACTGGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CAA 90 bp | GTAGCAAGAACAGGTAAGGATGAGGTCTGTCACTTGAGACAGAATGGGAATTTGAGTCTTCAGGGGCCTTaGCGGCTTTCCTATTACTGC | + |
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Preference number: 5 (lower is better) Translates to: VARTGKDEVCHLRQNGNLSLQGP*RLSYYC Trigger: GCAGTAATAGGAAAGCCGCAAAGGCCCCTGAAGACT...CAAATTCCCATTCTGTCTCAAGTGACAGACCTCATCCTTACCTGTTCTTGCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105283.9 |
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| CDS-3UTR CAA 90 bp | GTTGTGACTGAAGAACAAAGCTGGGTGGGTTTTCAGCACTCAGACGTTTCCCAATTCCCGCAGATCTCCTaGGTTTTGACAAGAGGATTA | + |
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Preference number: 5 (lower is better) Translates to: VVTEEQSWVGFQHSDVSQFPQIS*VLTRGL Trigger: TAATCCTCTTGTCAAAACCAAGGAGATCTGCGGGAA...TTGGGAAACGTCTGAGTGCTGAAAACCCACCCAGCTTTGTTCTTCAGTCACAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CAA 90 bp | TTTACAGATGATAATTCAGTGCAGGGTTCACAGCGAAGCACTCTGCTCCAACAATCTCGGGACCTAATGTaGAAGAGAGCACACAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: FTDDNSVQGSQRSTLLQQSRDLM*KRAHSH Trigger: GTGACTGTGTGCTCTCTTCAACATTAGGTCCCGAGA...TTGTTGGAGCAGAGTGCTTCGCTGTGAACCCTGCACTGAATTATCATCTGTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CAA 90 bp | GTGACTGAAGAACAAAGCTGGGTGGGTTTTCAGCACTCAGACGTTTCCCAAGCCGAAATATTTGAGAACTaGTCCAGAAGAGTAGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: VTEEQSWVGFQHSDVSQAEIFEN*SRRVVK Trigger: CTTGACTACTCTTCTGGACAAGTTCTCAAATATTTC...GGCTTGGGAAACGTCTGAGTGCTGAAAACCCACCCAGCTTTGTTCTTCAGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS-3UTR CAA 90 bp | ACGGTGCAAGTAGACTGGACACATGTTCTTGTCCCTATCATCACTTGCAAAACCGAAATATTTGAGAACTaGTCCAGAAGAGTAGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: TVQVDWTHVLVPIITCKTEIFEN*SRRVVK Trigger: CTTGACTACTCTTCTGGACAAGTTCTCAAATATTTC...GGTTTTGCAAGTGATGATAGGGACAAGAACATGTGTCCAGTCTACTTGCACCGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS TCA 90 bp | CCATGCATAACACGAGGTCATCCACTATTTTCCCAAGTTTGTCTATaGTGGAGTAATTACTCAAGCCTTCAGAAATATTTGAGAACTTGT | + |
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Preference number: 5 (lower is better) Translates to: PCITRGHPLFSQVCL*WSNYSSLQKYLRTC Trigger: ACAAGTTCTCAAATATTTCTGAAGGCTTGAGTAATTACTCCATCATAGACAAACTTGGGAAAATAGTGGATGACCTCGTGTTATGCATGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 ENSMUST00000130190.8 |
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| CDS TCA 72 bp | ATAAGGCTCCAAAAGCAAAGCCAATTACAAGCGAAATaGGAGCCGGCAATGCCATGGCTGTCCATTGTAGGC | + |
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Preference number: 6 (lower is better) Translates to: IRLQKQSQLQAK*EPAMPWLSIVG Trigger: GCCTACAATGGACAGCCATGGCATTGCCGGCTCTCATTTCGCTTGTAATTGGCTTTGCTTTTGGAGCCTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS CCA 72 bp | ACTAAAGAATTCTTCAGGAGTAAAGGATCTAGTTTCTaGCCTCTTCGGAGATTCTTTTATATTCTTCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: TKEFFRSKGSSF*PLRRFFYILRC Trigger: GCACCGAAGAATATAAAAGAATCTCCGAAGAGGCCAGAAACTAGATCCTTTACTCCTGAAGAATTCTTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 |
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| CDS TCA 72 bp | ACACGAGGTCATCCACTATTTTCCCAAGTTTGTCTATaGTGGAGTAATTACTCAAGCCTTCAGAAATATTTG | + |
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Preference number: 6 (lower is better) Translates to: TRGHPLFSQVCL*WSNYSSLQKYL Trigger: CAAATATTTCTGAAGGCTTGAGTAATTACTCCATCATAGACAAACTTGGGAAAATAGTGGATGACCTCGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020129.8 ENSMUST00000105283.9 ENSMUST00000130190.8 |
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