Pregenerated sensors for KIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037262Ensembl transcript IDs: ENSMUST00000042512.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TTAATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTaGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: LIQNKSPNTVELHSA*ANTNLMLHSFNVLL Trigger: TAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACTCCCCGGGGCCGGAATaGCTGTCTCTAAATGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHSPGPE*LSLNES Trigger: AGACTCATTTAGAGACAGTCATTCCGGCCCCGGGGA...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR GCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACTTCTCGTCGCGGCATTaGTTTTGGCACATCTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHFSSRH*FWHIWQ Trigger: CTGCCAGATGTGCCAAAAGCAATGCCGCGACGAGAA...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR GCA 90 bp | GAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGCCAGGCGTCTGTCCGTaGGGTCCTTTTCTTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ELHSALANTNLMLHSFNVPGVCP*GPFLFL Trigger: GAGGAAAAGAAAAGGACCGCACGGACAGACGCCTGG...CACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACGTCAGTGTCTCCCACTaGGTAGCGTTCATGTGGATG | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHVSVSH*VAFMWM Trigger: CATCCACATGAACGCTACCCAGTGGGAGACACTGAC...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACTATTGGCGATGGCCTTaGGGCTCAGAAAATCCGACT | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHYWRWP*GSENPT Trigger: AGTCGGATTTTCTGAGCCCCAAGGCCATCGCCAATA...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACTGCTTTTGGCACATCTaGCAGTACCAGCGAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHCFWHI*QYQRSF Trigger: GAAGCTTCGCTGGTACTGCCAGATGTGCCAAAAGCA...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | GAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTCGCGGCATTGCTTTTaGCACATCTGGCAGTACCAG | + |
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Preference number: 4 (lower is better) Translates to: ELHSALANTNLMLHSFNVSRHCF*HIWQYQ Trigger: CTGGTACTGCCAGATGTGCCAAAAGCAATGCCGCGA...CACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | GCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTATCAAATCCTCTTCGAGCTCCATaGTCTCATCCAGGGCCGACT | + |
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Preference number: 4 (lower is better) Translates to: ALANTNLMLHSFNVLLSNPLRAP*SHPGPT Trigger: AGTCGGCCCTGGATGAGATCATGGAGCTCGAAGAGG...ATTTGATAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR GCA 90 bp | ATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCGCGTTCATGTGGATGTaGTCTCGGTGGCTGATGTAT | + |
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Preference number: 4 (lower is better) Translates to: IQNKSPNTVELHSALANTAFMWM*SRWLMY Trigger: ATACATCAGCCACCGAGAGCACATCCACATGAACGC...GGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | TTAATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACTGGGTAGCGTTCATGTaGATGTGCTCTCGGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LIQNKSPNTVELHSALANWVAFM*MCSRWL Trigger: CAGCCACCGAGAGCACATCCACATGAACGCTACCCA...GTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | GAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGCCGACGGATGGTTTCTaGGTCTCTGTCTATGTACTG | + |
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Preference number: 4 (lower is better) Translates to: ELHSALANTNLMLHSFNVPTDGF*VSVYVL Trigger: CAGTACATAGACAGAGACCCAGAAACCATCCGTCGG...CACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACACCCCTTTCTTCTTGTaGTATTTCTCCCCAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHTPFFL*YFSPSF Trigger: GAAGCTTGGGGAGAAATATCACAAGAAGAAAGGGGT...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACATGACTGTCTCTAAATaGGTCTGGTCCAGTTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PNTVELHSALANTNLMLHMTVSK*VWSSFS Trigger: GCTGAAACTGGACCAGACTCATTTAGAGACAGTCAT...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | ATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCTGTGCTCTCGGTGGCTaGTGTATTCATTGTAGACAA | + |
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Preference number: 4 (lower is better) Translates to: IQNKSPNTVELHSALANTCALGG*CIHCRQ Trigger: TTGTCTACAATGAATACATCAGCCACCGAGAGCACA...GGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR GCA 90 bp | TTAATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACAGGCCTCTTCTCACCTaGTCCTCAATGAACTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LIQNKSPNTVELHSALANRPLLT*SSMNLA Trigger: TGCCAAGTTCATTGAGGAGCAGGTGAGAAGAGGCCT...GTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR GCA 90 bp | GAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGGAATACCTTCAACTCTaGGTCCTTTCAAAGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: ELHSALANTNLMLHSFNVEYLQL*VLSKVQ Trigger: CTGGACCTTTGAAAGGACGCAGAGTTGAAGGTATTC...CACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | GCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTATCAAATCCAGTTGCCGACGGATaGTTTCTGGGTCTCTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: ALANTNLMLHSFNVLLSNPVADG*FLGLCL Trigger: TAGACAGAGACCCAGAAACCATCCGTCGGCAACTGG...ATTTGATAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | CACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTATCTCTGTCTATGTACTaGATGTACCAGCCTTTCGGT | + |
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Preference number: 4 (lower is better) Translates to: HSALANTNLMLHSFNVLLSLSMY*MYQPFG Trigger: ACCGAAAGGCTGGTACATTCAGTACATAGACAGAGA...TAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CCA 90 bp | CACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTATACCAGCGAAGCTTCTaGAGCCCTTTGGACTTAATT | + |
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Preference number: 4 (lower is better) Translates to: HSALANTNLMLHSFNVLLYQRSF*SPLDLI Trigger: AATTAAGTCCAAAGGGCTCCAGAAGCTTCGCTGGTA...TAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | CACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTAGATTCAGACATACAGTaGCACTTAAAGCCATTCTCG | + |
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Preference number: 4 (lower is better) Translates to: HSALANTNLMLHSFNVLLDSDIQ*HLKPFS Trigger: CGAGAATGGCTTTAAGTGTCACTGTATGTCTGAATC...TAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR TCA 90 bp | GAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGAATGACTATCGTGGCTaGAAAAGCCTTCTCATTGAT | + |
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Preference number: 4 (lower is better) Translates to: ELHSALANTNLMLHSFNVNDYRG*KSLLID Trigger: ATCAATGAGAAGGCTTTTTCAGCCACGATAGTCATT...CACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| 3UTR CAA 72 bp | ACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTaGATGCTTCACAGTTTCAATGTGTTGTTATCAAAT | + |
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Preference number: 4 (lower is better) Translates to: TVELHSALANTN*MLHSFNVLLSN Trigger: ATTTGATAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS TCA 90 bp | AGGCGTCTGTCCGTGCGGTCCTTTTCTTTTCCTCTTCGAGCTCCATaGTCTCATCCAGGGCCGACTTCTTCTTCTTCGCAGGCTGGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RRLSVRSFSFPLRAP*SHPGPTSSSSQAGR Trigger: CCGCCCAGCCTGCGAAGAAGAAGAAGTCGGCCCTGGATGAGATCATGGAGCTCGAAGAGGAAAAGAAAAGGACCGCACGGACAGACGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CCA 90 bp | CCCTCTCTGCCCAGCCACTTGGTAAAGTCGGTCAGTGTCTCCCACTaGGTAGCGTTCATGTGGATGTGCTCTCGGTGGCTGATGTATTCA | + |
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Preference number: 5 (lower is better) Translates to: PSLPSHLVKSVSVSH*VAFMWMCSRWLMYS Trigger: TGAATACATCAGCCACCGAGAGCACATCCACATGAACGCTACCCAGTGGGAGACACTGACCGACTTTACCAAGTGGCTGGGCAGAGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CCA 90 bp | TCGCGGCATTGCTTTTGGCACATCTGGCAGTACCAGCGAAGCTTCTaGAGCCCTTTGGACTTAATTCTATTGGCGATGGCCTTGGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: SRHCFWHIWQYQRSF*SPLDLILLAMALGL Trigger: GAGCCCCAAGGCCATCGCCAATAGAATTAAGTCCAAAGGGCTCCAGAAGCTTCGCTGGTACTGCCAGATGTGCCAAAAGCAATGCCGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS TCA 90 bp | AATTCCAGTTGCCGACGGATGGTTTCTGGGTCTCTGTCTATGTACTaGATGTACCAGCCTTTCGGTGTCTCATCCACTTTACACAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: NSSCRRMVSGSLSMY*MYQPFGVSSTLHKP Trigger: GGGCTTGTGTAAAGTGGATGAGACACCGAAAGGCTGGTACATTCAGTACATAGACAGAGACCCAGAAACCATCCGTCGGCAACTGGAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACCTATTGGCGATGGCCTaGGGGCTCAGAAAATCCGAC | + |
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Preference number: 5 (lower is better) Translates to: PNTVELHSALANTNLMLHLLAMA*GLRKSD Trigger: GTCGGATTTTCTGAGCCCCAAGGCCATCGCCAATAG...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACTCTCTGCCCAGCCACTaGGTAAAGTCGGTCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: PNTVELHSALANTNLMLHSLPSH*VKSVSV Trigger: GACACTGACCGACTTTACCAAGTGGCTGGGCAGAGA...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACCCCAAAGAGCTTGACTaGGATGTTGTAGCTCCCGCT | + |
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Preference number: 5 (lower is better) Translates to: PNTVELHSALANTNLMLHPKELD*DVVAPA Trigger: AGCGGGAGCTACAACATCCAAGTCAAGCTCTTTGGG...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | GAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGATTCTCGTCGCGGCATaGCTTTTGGCACATCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: ELHSALANTNLMLHSFNVILVAA*LLAHLA Trigger: TGCCAGATGTGCCAAAAGCAATGCCGCGACGAGAAT...CACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | CCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAATTTGATGCTTCACAGCTTCTGGAGCCCTTaGGACTTAATTCTATTGGCG | + |
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Preference number: 5 (lower is better) Translates to: PNTVELHSALANTNLMLHSFWSP*DLILLA Trigger: CGCCAATAGAATTAAGTCCAAAGGGCTCCAGAAGCT...GTGAAGCATCAAATTGGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | TTAATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACGTCGCGGCATTGCTTTaGGCACATCTGGCAGTACCA | + |
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Preference number: 5 (lower is better) Translates to: LIQNKSPNTVELHSALANVAALL*AHLAVP Trigger: TGGTACTGCCAGATGTGCCAAAAGCAATGCCGCGAC...GTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | ATACAAAACAAATCCCCTAACACAGTAGAGTTACACAGTGCCTTGGCTAACACCAGATATGTCTTCATATaGAATACCTTCAACTCTGCG | + |
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Preference number: 5 (lower is better) Translates to: IQNKSPNTVELHSALANTRYVFI*NTFNSA Trigger: CGCAGAGTTGAAGGTATTCAATATGAAGACATATCT...GGTGTTAGCCAAGGCACTGTGTAACTCTACTGTGTTAGGGGATTTGTTTTGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | GCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTATCAAATCAGCAACAGTTGTCTTaGATGAGATTCAGACATACA | + |
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Preference number: 5 (lower is better) Translates to: ALANTNLMLHSFNVLLSNQQQLS*MRFRHT Trigger: TGTATGTCTGAATCTCATCAAAGACAACTGTTGCTG...ATTTGATAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS-3UTR CAA 90 bp | GCCTTGGCTAACACCAATTTGATGCTTCACAGTTTCAATGTGTTGTTATCAAATGCTCCTTTATTCAGATaGAACGTAACTTTTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: ALANTNLMLHSFNVLLSNAPLFR*NVTFSS Trigger: GGAAGAAAAAGTTACGTTCAATCTGAATAAAGGAGC...ATTTGATAACAACACATTGAAACTGTGAAGCATCAAATTGGTGTTAGCCAAGGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CCA 72 bp | CCCAGCCACTTGGTAAAGTCGGTCAGTGTCTCCCACTaGGTAGCGTTCATGTGGATGTGCTCTCGGTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PSHLVKSVSVSH*VAFMWMCSRWL Trigger: CAGCCACCGAGAGCACATCCACATGAACGCTACCCAGTGGGAGACACTGACCGACTTTACCAAGTGGCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 90 bp | GCGCTCCCCAGCAGCTTCAGTGCACTTGGTCCCAAAGAGCTTGACTaGGATGTTGTAGCTCCCGCTGAGCCACCCGCTCCTTTATTCAGA | + |
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Preference number: 6 (lower is better) Translates to: ALPSSFSALGPKELD*DVVAPAEPPAPLFR Trigger: TCTGAATAAAGGAGCGGGTGGCTCAGCGGGAGCTACAACATCCAAGTCAAGCTCTTTGGGACCAAGTGCACTGAAGCTGCTGGGGAGCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 72 bp | AGCAGCTTCAGTGCACTTGGTCCCAAAGAGCTTGACTaGGATGTTGTAGCTCCCGCTGAGCCACCCGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SSFSALGPKELD*DVVAPAEPPAP Trigger: AGGAGCGGGTGGCTCAGCGGGAGCTACAACATCCAAGTCAAGCTCTTTGGGACCAAGTGCACTGAAGCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CCA 72 bp | AAGCCATTCTCGTCGCGGCATTGCTTTTGGCACATCTaGCAGTACCAGCGAAGCTTCTGGAGCCCTTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: KPFSSRHCFWHI*QYQRSFWSPLD Trigger: GTCCAAAGGGCTCCAGAAGCTTCGCTGGTACTGCCAGATGTGCCAAAAGCAATGCCGCGACGAGAATGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 72 bp | TCATCCACTTTACACAAGCCCTCTCTGCCCAGCCACTaGGTAAAGTCGGTCAGTGTCTCCCACTGGGTAGCG | + |
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Preference number: 6 (lower is better) Translates to: SSTLHKPSLPSH*VKSVSVSHWVA Trigger: CGCTACCCAGTGGGAGACACTGACCGACTTTACCAAGTGGCTGGGCAGAGAGGGCTTGTGTAAAGTGGATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 90 bp | TTCGGTGTCTCATCCACTTTACACAAGCCCTCTCTGCCCAGCCACTaGGTAAAGTCGGTCAGTGTCTCCCACTGGGTAGCGTTCATGTGG | + |
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Preference number: 6 (lower is better) Translates to: FGVSSTLHKPSLPSH*VKSVSVSHWVAFMW Trigger: CCACATGAACGCTACCCAGTGGGAGACACTGACCGACTTTACCAAGTGGCTGGGCAGAGAGGGCTTGTGTAAAGTGGATGAGACACCGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 72 bp | CACATCTGGCAGTACCAGCGAAGCTTCTGGAGCCCTTaGGACTTAATTCTATTGGCGATGGCCTTGGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: HIWQYQRSFWSP*DLILLAMALGL Trigger: GAGCCCCAAGGCCATCGCCAATAGAATTAAGTCCAAAGGGCTCCAGAAGCTTCGCTGGTACTGCCAGATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS TCA 72 bp | TCCGTGCGGTCCTTTTCTTTTCCTCTTCGAGCTCCATaGTCTCATCCAGGGCCGACTTCTTCTTCTTCGCAG | + |
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Preference number: 6 (lower is better) Translates to: SVRSFSFPLRAP*SHPGPTSSSSQ Trigger: CTGCGAAGAAGAAGAAGTCGGCCCTGGATGAGATCATGGAGCTCGAAGAGGAAAAGAAAAGGACCGCACGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 72 bp | GTGACACTTAAAGCCATTCTCGTCGCGGCATTGCTTTaGGCACATCTGGCAGTACCAGCGAAGCTTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: VTLKAILVAALL*AHLAVPAKLLE Trigger: CTCCAGAAGCTTCGCTGGTACTGCCAGATGTGCCAAAAGCAATGCCGCGACGAGAATGGCTTTAAGTGTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CCA 72 bp | TGCTTTTGGCACATCTGGCAGTACCAGCGAAGCTTCTaGAGCCCTTTGGACTTAATTCTATTGGCGATGGCC | + |
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Preference number: 6 (lower is better) Translates to: CFWHIWQYQRSF*SPLDLILLAMA Trigger: GGCCATCGCCAATAGAATTAAGTCCAAAGGGCTCCAGAAGCTTCGCTGGTACTGCCAGATGTGCCAAAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS TCA 72 bp | TGCCGACGGATGGTTTCTGGGTCTCTGTCTATGTACTaGATGTACCAGCCTTTCGGTGTCTCATCCACTTTA | + |
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Preference number: 6 (lower is better) Translates to: CRRMVSGSLSMY*MYQPFGVSSTL Trigger: TAAAGTGGATGAGACACCGAAAGGCTGGTACATTCAGTACATAGACAGAGACCCAGAAACCATCCGTCGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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| CDS CAA 90 bp | TTGGATGTTGTAGCTCCCGCTGAGCCACCCGCTCCTTTATTCAGATaGAACGTAACTTTTTCTTCCTCATTTTCTCGGCTAAGTTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: LDVVAPAEPPAPLFR*NVTFSSSFSRLSSV Trigger: TACAGAACTTAGCCGAGAAAATGAGGAAGAAAAAGTTACGTTCAATCTGAATAAAGGAGCGGGTGGCTCAGCGGGAGCTACAACATCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042512.8 |
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