RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KIFC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079553

Ensembl transcript IDs: ENSMUST00000114361.9, ENSMUST00000173386.2, ENSMUST00000173492.9, ENSMUST00000173982.2

Found 135 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACAGCATGCGCACTGGCTTaGAAGGGAATCAGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTACALA*KGIRLW
Trigger: CCAGAGCCTGATTCCCTTGCAAGCCAGTGCGCATGC...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
3UTR-3UTR CCA 90 bp AAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAAGAGACGCATGCGCACTaGCTTGCAAGGGAATCAGGC +
Preference number: 2 (lower is better)
Translates to: KYCSPNKIMSQLPPTPTEETHAH*LARESG
Trigger: GCCTGATTCCCTTGCAAGCCAGTGCGCATGCGTCTC...TTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
3UTR-3UTR GCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCGCATGCGCACTGGCTTaGAAGGGAATCAGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPACALA*KGIRLW
Trigger: CCAGAGCCTGATTCCCTTGCAAGCCAGTGCGCATGC...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
3UTR-3UTR GCA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCGCATGCGCACTGGCTTaGAAGGGAATCAGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTACALA*KGIRLW
Trigger: CCAGAGCCTGATTCCCTTGCAAGCCAGTGCGCATGC...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
3UTR CCA 72 bp CACCGAATACACACTAAAACAGAGACGCATGCGCACTaGCTTGCAAGGGAATCAGGCTCTGGATCCGACTTC +
Preference number: 3 (lower is better)
Translates to: HRIHTKTETHAH*LARESGSGSDF
Trigger: GAAGTCGGATCCAGAGCCTGATTCCCTTGCAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173982.2
CDS-3UTR TCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGGCTCCTGGACCTCTCTaGGTTGCTCCCGAAGACCCC +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLAPGPL*VAPEDP
Trigger: GGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGC...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGGTGCTCCGCTCCTCCTaGAATTGCAGCCGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLVLRSS*NCSRSP
Trigger: GGGAGAGCGGCTGCAATTGCAGGAGGAGCGGAGCAC...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGGCTGCTTCTGTGGCCTaGAACCTCCTCTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLAASVA*NLLSCS
Trigger: GGAGCAGGAGAGGAGGTTTCAGGCCACAGAAGCAGC...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGCAGGAGCAGTGGATGTaGCAGGCTTCTGGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLQEQWM*QASGQE
Trigger: CTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCTG...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGAGGAGCAGCGGGAACTaGCTTCTGGCTCCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLRSSGN*LLAPQH
Trigger: GTGCTGAGGAGCCAGAAGCCAGTTCCCGCTGCTCCT...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGATCAGCCCTTCCAATTaGGGGTCTCCCCTAGGCCCT +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLISPSN*GSPLGP
Trigger: AGGGCCTAGGGGAGACCCCCAATTGGAAGGGCTGAT...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp CCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGCAAGCTGGGTGCTCAGTGTaGTCCGCTCCTCCTGCAATT +
Preference number: 4 (lower is better)
Translates to: PTPTEYTLKQRRMRTGLQAGCSV*SAPPAI
Trigger: AATTGCAGGAGGAGCGGAGCACACTGAGCACCCAGC...TTGCAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGCCATCCAGTGCTGACTaGACAAGCATGGCGATCTCC +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLPSSAD*TSMAIS
Trigger: GGAGATCGCCATGCTTGTCCAGTCAGCACTGGATGG...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACAGTGGCCCTGGGTCTGTaGCACTGTGCTGAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: CSPNKIMSQLPPTPTEYTVALGL*HCAEEW
Trigger: CCACTCCTCAGCACAGTGTCACAGACCCAGGGCCAC...TGTGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACAGGTCAGGACCCCTCTTaGGCCTGCTTGCTGACAGGG +
Preference number: 4 (lower is better)
Translates to: CSPNKIMSQLPPTPTEYTGQDPS*ACLLTG
Trigger: CCCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACC...TGTGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp CCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGCAACCACCTCTTCTTGGCTaGTTGACAGAGCTGCTTCTG +
Preference number: 4 (lower is better)
Translates to: PTPTEYTLKQRRMRTGLQPPLLG*LTELLL
Trigger: CAGAAGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGG...TTGCAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp CCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGCAATTGCCCTTCAGTTCCTaGAGCTGGTTGTGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: PTPTEYTLKQRRMRTGLQLPFSS*SWLWSR
Trigger: ACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAA...TTGCAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGGATGATCTCTTATTTTaGGCAGTGTGGGCCACAGCC +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLDDLLF*AVWATA
Trigger: GGCTGTGGCCCACACTGCCCAAAATAAGAGATCATC...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACCCCAGGGTCGTGGCCTaGTCCTGGACCTCTCTGAGT +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYPRVVA*SWTSLS
Trigger: ACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGG...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACTCCTGCTCCTCCAGCTaGGTGCTCAGTGTGCTCCGC +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYSCSSS*VLSVLR
Trigger: GCGGAGCACACTGAGCACCCAGCTGGAGGAGCAGGA...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp AAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAAGTGGCCCTGGGTCTGTaGCACTGTGCTGAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: KYCSPNKIMSQLPPTPTEVALGL*HCAEEW
Trigger: CCACTCCTCAGCACAGTGTCACAGACCCAGGGCCAC...TTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATGCTCCTGGACCTCTCTaGGTTGCTCCCGAAGACCCC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNAPGPL*VAPEDP
Trigger: GGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGC...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp CCACCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGAGCTGGAACACACTATaGCTGCGTGATGATCTCTTA +
Preference number: 4 (lower is better)
Translates to: PPTPTEYTLKQRRMRTGLSWNTL*LRDDLL
Trigger: TAAGAGATCATCACGCAGTCATAGTGTGTTCCAGCT...CAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACAAGGGCCTTTCTGAGCTaGAGTGTGGCCCTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTRAFLS*SVALGL
Trigger: CAGACCCAGGGCCACACTGCAGCTCAGAAAGGCCCT...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATGTGCTCCGCTCCTCCTaGAATTGCAGCCGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNVLRSS*NCSRSP
Trigger: GGGAGAGCGGCTGCAATTGCAGGAGGAGCGGAGCAC...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAAGCTCCTCCAGCTGGGTaGTCAGTGTGCTCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: KYCSPNKIMSQLPPTPTEAPPAG*SVCSAP
Trigger: AGGAGCGGAGCACACTGAGCACCCAGCTGGAGGAGC...TTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACAAGCCTCTGCTGGTCCTaGTCAGCTCGGCTGCGTACA +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTSLCWS*SARLRT
Trigger: TGTACGCAGCCGAGCTGAGCAGGACCAGCAGAGGCT...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACGCTGCAGTGTGGCCCTaGGTCTGTGACACTGTGCTG +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYAAVWP*VCDTVL
Trigger: CAGCACAGTGTCACAGACCCAGGGCCACACTGCAGC...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACATCCTGCAGCTGGTTGTaGAGTCGTCGCCGCTCCATC +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTSCSWL*SRRRSI
Trigger: GATGGAGCGGCGACGACTCCACAACCAGCTGCAGGA...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACTTCTTAGGGCCTTTCTaGGCTGCAGTGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYFLGPF*AAVWPW
Trigger: CCAGGGCCACACTGCAGCTCAGAAAGGCCCTAAGAA...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATGCTGCTTCTGTGGCCTaGAACCTCCTCTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNAASVA*NLLSCS
Trigger: GGAGCAGGAGAGGAGGTTTCAGGCCACAGAAGCAGC...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATGCCACAGAGAACAGATaGCGCATGGCCCGAGGGATC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNATENR*RMARGI
Trigger: GATCCCTCGGGCCATGCGGCATCTGTTCTCTGTGGC...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACTGCAGGCCCCGAGCTaGATGCTCTCCAGAAATCTG +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTLQAPS*MLSRNL
Trigger: CAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAG...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp AAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAAAGGAGCAGCGGGAACTaGCTTCTGGCTCCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: KYCSPNKIMSQLPPTPTERSSGN*LLAPQH
Trigger: GTGCTGAGGAGCCAGAAGCCAGTTCCCGCTGCTCCT...TTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACATTCAGTTCCTGCAGCTaGTTGTGGAGTCGTCGCCGC +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTFSSCS*LWSRRR
Trigger: GCGGCGACGACTCCACAACCAGCTGCAGGAACTGAA...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACATCAAAGGAGAAATCATaGCGGACAGTGGGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTSKEKS*RTVGAG
Trigger: CCCGGCCCCCACTGTCCGCCATGATTTCTCCTTTGA...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACATCAGCCCTTCCAATTaGGGGTCTCCCCTAGGCCCT +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYISPSN*GSPLGP
Trigger: AGGGCCTAGGGGAGACCCCCAATTGGAAGGGCTGAT...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACAGAACAGATGCCGCATaGCCCGAGGGATCAGCCCTT +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYRTDAA*PEGSAL
Trigger: AAGGGCTGATCCCTCGGGCCATGCGGCATCTGTTCT...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACGTAGCCATCCAGTGCTaGCTGGACAAGCATGGCGAT +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYVAIQC*LDKHGD
Trigger: ATCGCCATGCTTGTCCAGTCAGCACTGGATGGCTAC...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACACCTGAGCAGTACCAATaGCACACTGGTTCACCTTGG +
Preference number: 4 (lower is better)
Translates to: CSPNKIMSQLPPTPTEYTPEQYQ*HTGSPW
Trigger: CCAAGGTGAACCAGTGTGTCATTGGTACTGCTCAGG...TGTGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
CDS-3UTR GCA 90 bp TGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACACCACCTCTTCTTGGCTaGTTGACAGAGCTGCTTCTG +
Preference number: 4 (lower is better)
Translates to: CSPNKIMSQLPPTPTEYTPPLLG*LTELLL
Trigger: CAGAAGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGG...TGTGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATCTGCAGGCCCCGAGCTaGATGCTCTCCAGAAATCTG +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNLQAPS*MLSRNL
Trigger: CAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAG...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATTTCAGTTCCTGCAGCTaGTTGTGGAGTCGTCGCCGC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNFSSCS*LWSRRR
Trigger: GCGGCGACGACTCCACAACCAGCTGCAGGAACTGAA...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATGTAGCCATCCAGTGCTaGCTGGACAAGCATGGCGAT +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNVAIQC*LDKHGD
Trigger: ATCGCCATGCTTGTCCAGTCAGCACTGGATGGCTAC...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACTTGCCCTTCAGTTCCTaGAGCTGGTTGTGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYLPFSS*SWLWSR
Trigger: ACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAA...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATTCAAACACTTCCTCCTaGTTGCTTCCCGGCGGGAAC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNSNTSS*LLPGGN
Trigger: GTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGA...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATCCTGAGCAGTACCAATaGCACACTGGTTCACCTTGG +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNPEQYQ*HTGSPW
Trigger: CCAAGGTGAACCAGTGTGTCATTGGTACTGCTCAGG...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
CDS-3UTR TCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCTTGAGCCTGCTTGCTaGCAGGGGCACTCGGGAGGA +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPLEPAC*QGHSGG
Trigger: TCCTCCCGAGTGCCCCTGTCAGCAAGCAGGCTCAAG...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCGCTCCTCCAGCTGGGTaGTCAGTGTGCTCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPAPPAG*SVCSAP
Trigger: AGGAGCGGAGCACACTGAGCACCCAGCTGGAGGAGC...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATTGGGCTTCAGTCTTCTaGCGAAGACACACCACCTCT +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNWASVF*RRHTTS
Trigger: AGAGGTGGTGTGTCTTCGGCAGAAGACTGAAGCCCA...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACAAGAACACCCGGATATTaGCCTTCAGTTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTRTPGY*PSVPAA
Trigger: AGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCT...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACAAGCTGGAACACACTATaGCTGCGTGATGATCTCTTA +
Preference number: 4 (lower is better)
Translates to: CSPNKIMSQLPPTPTEYTSWNTL*LRDDLL
Trigger: TAAGAGATCATCACGCAGTCATAGTGTGTTCCAGCT...TGTGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCAGGGCCTTTCTGAGCTaGAGTGTGGCCCTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPRAFLS*SVALGL
Trigger: CAGACCCAGGGCCACACTGCAGCTCAGAAAGGCCCT...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAAAGAACACCCGGATATTaGCCTTCAGTTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: KYCSPNKIMSQLPPTPTERTPGY*PSVPAA
Trigger: AGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCT...TTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp ATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACACTTCTTATTAGCCTaGGCAGTACCAATGACACAC +
Preference number: 4 (lower is better)
Translates to: IVHPIKSCLNSHPPPPNTHFLLA*AVPMTH
Trigger: GTGTGTCATTGGTACTGCTCAGGCTAATAAGAAGTG...TGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCAGGAGCAGTGGATGTaGCAGGCTTCTGGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTQEQWM*QASGQE
Trigger: CTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCTG...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCGCTGGGTGCTCAGTGTaGTCCGCTCCTCCTGCAATT +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPAGCSV*SAPPAI
Trigger: AATTGCAGGAGGAGCGGAGCACACTGAGCACCCAGC...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCGCTGCAGTGTGGCCCTaGGTCTGTGACACTGTGCTG +
Preference number: 4 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTAAVWP*VCDTVL
Trigger: CAGCACAGTGTCACAGACCCAGGGCCACACTGCAGC...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCAGAACAGATGCCGCATaGCCCGAGGGATCAGCCCTT +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPRTDAA*PEGSAL
Trigger: AAGGGCTGATCCCTCGGGCCATGCGGCATCTGTTCT...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATCACTTCTTATTAGCCTaGGCAGTACCAATGACACAC +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNHFLLA*AVPMTH
Trigger: GTGTGTCATTGGTACTGCTCAGGCTAATAAGAAGTG...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCTCAAACACTTCCTCCTaGTTGCTTCCCGGCGGGAAC +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPSNTSS*LLPGGN
Trigger: GTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGA...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR TCA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCTGAGCAGTACCAATaGCACACTGGTTCACCTTGG +
Preference number: 4 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPPEQYQ*HTGSPW
Trigger: CCAAGGTGAACCAGTGTGTCATTGGTACTGCTCAGG...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
CDS-3UTR CCA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCATCCAGTGCTGACTaGACAAGCATGGCGATCTCC +
Preference number: 4 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTPSSAD*TSMAIS
Trigger: GGAGATCGCCATGCTTGTCCAGTCAGCACTGGATGG...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCTGGGCTTCAGTCTTCTaGCGAAGACACACCACCTCT +
Preference number: 4 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTWASVF*RRHTTS
Trigger: AGAGGTGGTGTGTCTTCGGCAGAAGACTGAAGCCCA...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp AATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATGGAACACACTATGACTaGGTGATGATCTCTTATTTT +
Preference number: 4 (lower is better)
Translates to: NIVHPIKSCLNSHPPPPNGTHYD*VMISYF
Trigger: AAAATAAGAGATCATCACGCAGTCATAGTGTGTTCC...ATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR GCA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCGGAACACACTATGACTaGGTGATGATCTCTTATTTT +
Preference number: 4 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTGTHYD*VMISYF
Trigger: AAAATAAGAGATCATCACGCAGTCATAGTGTGTTCC...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp AGCTCCAAGACACGGGCACTCAGCGTCTCCAGCCTCTGCTGGTCCTaGTCAGCTCGGCTGCGTACACTGGCCAGCTCCCCTTCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: SSKTRALSVSSLCWS*SARLRTLASSPSRV
Trigger: CACCCTGGAAGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGGACCAGCAGAGGCTGGAGACGCTGAGTGCCCGTGTCTTGGAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CCA 90 bp CCTGAAGCAGCCTTTCCCTGGTCTGCTCAGCTCGGCTGCGTACACTaGCCAGCTCCCCTTCCAGGGTGTTCCGCTCTGTCCCCAGGGTCG +
Preference number: 5 (lower is better)
Translates to: PEAAFPWSAQLGCVH*PAPLPGCSALSPGS
Trigger: CGACCCTGGGGACAGAGCGGAACACCCTGGAAGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGACCAGGGAAAGGCTGCTTCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114361.9
CDS TCA 90 bp GTAAGCCAGGGTCTAGCCGCTCACTCCCAGCTAGGTCCACAAGGTTaGGCGGAGCGCCACACTGCAGGCCCCGAGCTGCATGCTCTCCAG +
Preference number: 5 (lower is better)
Translates to: VSQGLAAHSQLGPQG*AERHTAGPELHALQ
Trigger: CTGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTTGTGGACCTAGCTGGGAGTGAGCGGCTAGACCCTGGCTTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp CATTCCTCCAGCTCCAAGACACGGGCACTCAGCGTCTCCAGCCTCTaGTGGTCCTGCTCAGCTCGGCTGCGTACACTGGCCAGCTCCCCT +
Preference number: 5 (lower is better)
Translates to: HSSSSKTRALSVSSL*WSCSARLRTLASSP
Trigger: AGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGGACCAGCAGAGGCTGGAGACGCTGAGTGCCCGTGTCTTGGAGCTGGAGGAATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CCA 90 bp CCTTCCAGGGTGTTCCGCTCTGTCCCCAGGGTCGTGGCCTGCTCCTaGACCTCTCTGAGTTGCTCCCGAAGACCCCGGTTCTCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: PSRVFRSVPRVVACS*TSLSCSRRPRFSSS
Trigger: GGAACTGGAGAACCGGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGGACAGAGCGGAACACCCTGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CCA 90 bp GTCCAGCAGGGCCAGGAGGAAACACGAGGAAGCCAGGAGATGGAGTaGATTCCCCTTCGAGGACAGGGCGCACGCGGCAGAACACCCGGA +
Preference number: 5 (lower is better)
Translates to: VQQGQEETRGSQEME*IPLRGQGARGRTPG
Trigger: TCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCGAAGGGGAATCCACTCCATCTCCTGGCTTCCTCGTGTTTCCTCCTGGCCCTGCTGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp GACATAGCGGGCATTGGTGACAGTAAGCTCCTCACTTCCTGGGCTTaGCCGACGGATCTCACACTCGCCCCCTTGTCCCTTGCGGGGCCC +
Preference number: 5 (lower is better)
Translates to: DIAGIGDSKLLTSWA*PTDLTLAPLSLAGP
Trigger: GGGCCCCGCAAGGGACAAGGGGGCGAGTGTGAGATCCGTCGGGCAAGCCCAGGAAGTGAGGAGCTTACTGTCACCAATGCCCGCTATGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
CDS CCA 90 bp GCAGCGGGAACTGGCTTCTGGCTCCTCAGCACTGCAGTGTGGCCCTaGGTCTGTGACACTGTGCTGAGGAGTGGTCCTCTGGGACGGGAT +
Preference number: 5 (lower is better)
Translates to: AAGTGFWLLSTAVWP*VCDTVLRSGPLGRD
Trigger: ATCCCGTCCCAGAGGACCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGTGCTGAGGAGCCAGAAGCCAGTTCCCGCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173386.2
CDS TCA 90 bp TGTTCCGCTCTGTCCCCAGGGTCGTGGCCTGCTCCTGGACCTCTCTaGGTTGCTCCCGAAGACCCCGGTTCTCCAGTTCCAGCGTTTGAG +
Preference number: 5 (lower is better)
Translates to: CSALSPGSWPAPGPL*VAPEDPGSPVPAFE
Trigger: CTCAAACGCTGGAACTGGAGAACCGGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGGACAGAGCGGAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS TCA 90 bp CAAGGCATCCTCCATCTGGTCAGGACCCCTCTTGAGCCTGCTTGCTaGCAGGGGCACTCGGGAGGAGGACTTCACCAGGGCTGCCTTCAG +
Preference number: 5 (lower is better)
Translates to: QGILHLVRTPLEPAC*QGHSGGGLHQGCLQ
Trigger: CTGAAGGCAGCCCTGGTGAAGTCCTCCTCCCGAGTGCCCCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACCAGATGGAGGATGCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS GCA 90 bp CTGCTTCTGTGGCCTGAAACCTCCTCTCCTGCTCCTCCAGCTGGGTaGTCAGTGTGCTCCGCTCCTCCTGCAATTGCAGCCGCTCTCCCT +
Preference number: 5 (lower is better)
Translates to: LLLWPETSSPAPPAG*SVCSAPPAIAAALP
Trigger: AGGGAGAGCGGCTGCAATTGCAGGAGGAGCGGAGCACACTGAGCACCCAGCTGGAGGAGCAGGAGAGGAGGTTTCAGGCCACAGAAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp ATTCCCCTTCGAGGACAGGGCGCACGCGGCAGAACACCCGGATATTaGCCTTCAGTTCCTGCAGCTGGTTGTGGAGTCGTCGCCGCTCCA +
Preference number: 5 (lower is better)
Translates to: IPLRGQGARGRTPGY*PSVPAAGCGVVAAP
Trigger: TGGAGCGGCGACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCGAAGGGGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp CGCTCACTCCCAGCTAGGTCCACAAGGTTGAGCGGAGCGCCACACTaGAGGCCCCGAGCTGCATGCTCTCCAGAAATCTGCAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: RSLPARSTRLSGAPH*RPRAACSPEICSWN
Trigger: GTTCCAGCTGCAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTTGTGGACCTAGCTGGGAGTGAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 90 bp GCTCTCTTCCCTACCACCACAGGAGCAGTGGATGTGCCAGGCTTCTaGGCAGGAGCAGCGGGAACTGGCTTCTGGCTCCTCAGCACTGCA +
Preference number: 5 (lower is better)
Translates to: ALFPTTTGAVDVPGF*AGAAGTGFWLLSTA
Trigger: TGCAGTGCTGAGGAGCCAGAAGCCAGTTCCCGCTGCTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCTGTGGTGGTAGGGAAGAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173386.2
CDS CCA 90 bp AGGAGCAGTGGATGTGCCAGGCTTCTGGGCAGGAGCAGCGGGAACTaGCTTCTGGCTCCTCAGCACTGTACCAATAGCAGAGCACCCACG +
Preference number: 5 (lower is better)
Translates to: RSSGCARLLGRSSGN*LLAPQHCTNSRAPT
Trigger: CGTGGGTGCTCTGCTATTGGTACAGTGCTGAGGAGCCAGAAGCCAGTTCCCGCTGCTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 90 bp GCTCTCTTCCCTACCACCACAGGAGCAGTGGATGTGCCAGGCTTCTaGGCAGGAGCAGCGGGAACTGGCTTCTGGCTCCTCAGCACTGTA +
Preference number: 5 (lower is better)
Translates to: ALFPTTTGAVDVPGF*AGAAGTGFWLLSTV
Trigger: TACAGTGCTGAGGAGCCAGAAGCCAGTTCCCGCTGCTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCTGTGGTGGTAGGGAAGAGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 90 bp TCTTTGCAGGCTCCAAGGCATCCTCCATCTGGTCAGGACCCCTCTTaGGCCTGCTTGCTGACAGGGGCACTCGGGAGGAGGACTTCACCA +
Preference number: 5 (lower is better)
Translates to: SLQAPRHPPSGQDPS*ACLLTGALGRRTSP
Trigger: TGGTGAAGTCCTCCTCCCGAGTGCCCCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACCAGATGGAGGATGCCTTGGAGCCTGCAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS-3UTR CAA 90 bp CCCACCCCCACCGAATACACACTAAAACAGAGACGCATGCGCACTGGCTTGCAAGATCAGCCCTTCCAATaGGGGGTCTCCCCTAGGCCC +
Preference number: 5 (lower is better)
Translates to: PTPTEYTLKQRRMRTGLQDQPFQ*GVSPRP
Trigger: GGGCCTAGGGGAGACCCCCAATTGGAAGGGCTGATC...TTGCAAGCCAGTGCGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGGGGGTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 90 bp CCAATAGCAGAGCACCCACGAGGTCCTGTCTTCTTAGGGCCTTTCTaGGCTGCAGTGTGGCCCTGGGTCTGTGACACTGTGCTGAGGAGT +
Preference number: 5 (lower is better)
Translates to: PIAEHPRGPVFLGPF*AAVWPWVCDTVLRS
Trigger: ACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGCTCAGAAAGGCCCTAAGAAGACAGGACCTCGTGGGTGCTCTGCTATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp GCTGAGGAGTGGTCCTCTGGGACGGGATGTGTCAACTTTGGTCACTaGACCCATGACTCGTGTCCGTTTCTTTGCAGGCTCCAAGGCATC +
Preference number: 5 (lower is better)
Translates to: AEEWSSGTGCVNFGH*THDSCPFLCRLQGI
Trigger: GATGCCTTGGAGCCTGCAAAGAAACGGACACGAGTCATGGGTGCAGTGACCAAAGTTGACACATCCCGTCCCAGAGGACCACTCCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS GCA 90 bp CCTGGGCTTCAGTCTTCTGCCGAAGACACACCACCTCTTCTTGGCTaGTTGACAGAGCTGCTTCTGTGGCCTGAAACCTCCTCTCCTGCT +
Preference number: 5 (lower is better)
Translates to: PGLQSSAEDTPPLLG*LTELLLWPETSSPA
Trigger: AGCAGGAGAGGAGGTTTCAGGCCACAGAAGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGGTGTGTCTTCGGCAGAAGACTGAAGCCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp CGGTCTCCTTGCTCAGCCAGTAAGGTCACCTGGGCTTCAGTCTTCTaGCGAAGACACACCACCTCTTCTTGGCTGCTTGACAGAGCTGCT +
Preference number: 5 (lower is better)
Translates to: RSPCSASKVTWASVF*RRHTTSSWLLDRAA
Trigger: AGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGGTGTGTCTTCGGCAGAAGACTGAAGCCCAGGTGACCTTACTGGCTGAGCAAGGAGACCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CAA 90 bp TGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACACACTCACACTCGCCCCCTaGTCCCTTGCGGGGCCCAGT +
Preference number: 5 (lower is better)
Translates to: CSPNKIMSQLPPTPTEYTLTLAP*SLAGPS
Trigger: ACTGGGCCCCGCAAGGGACAAGGGGGCGAGTGTGAG...TGTGTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
CDS GCA 90 bp CTGACTGGACAAGCATGGCGATCTCCTCAAACACTTCCTCCTGCTTaGTTCCCGGCGGGAACACCCGATCAAAGGAGAAATCATGGCGGA +
Preference number: 5 (lower is better)
Translates to: LTGQAWRSPQTLPPA*FPAGTPDQRRNHGG
Trigger: TCCGCCATGATTTCTCCTTTGATCGGGTGTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGAGGAGATCGCCATGCTTGTCCAGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 90 bp CCCCGAGCTGCATGCTCTCCAGAAATCTGCAGCTGGAACACACTATaGCTGCGTGATGATCTCTTATTTTGGGCAGTGTGGGCCACAGCC +
Preference number: 5 (lower is better)
Translates to: PRAACSPEICSWNTL*LRDDLLFWAVWATA
Trigger: GGCTGTGGCCCACACTGCCCAAAATAAGAGATCATCACGCAGTCATAGTGTGTTCCAGCTGCAGATTTCTGGAGAGCATGCAGCTCGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 90 bp AGTGCTGACTGGACAAGCATGGCGATCTCCTCAAACACTTCCTCCTaGTTGCTTCCCGGCGGGAACACCCGATCAAAGGAGAAATCATGG +
Preference number: 5 (lower is better)
Translates to: SADWTSMAISSNTSS*LLPGGNTRSKEKSW
Trigger: CCATGATTTCTCCTTTGATCGGGTGTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGAGGAGATCGCCATGCTTGTCCAGTCAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CAA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACAGTTCCTGCAGCTGGTaGTGGAGTCGTCGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYSSCSW*WSRRRS
Trigger: GGAGCGGCGACGACTCCACAACCAGCTGCAGGAACT...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CAA 90 bp TATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCCCACCGAATACTGGTCAGGACCCCTCTaGAGCCTGCTTGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: YCSPNKIMSQLPPTPTEYWSGPL*SLLADR
Trigger: CCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACCA...GTATTCGGTGGGGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173492.9
CDS-3UTR CAA 90 bp TACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCCGATCAGCCCTTCCAATaGGGGGTCTCCCCTAGGCCC +
Preference number: 5 (lower is better)
Translates to: YIINIVHPIKSCLNSHPPDQPFQ*GVSPRP
Trigger: GGGCCTAGGGGAGACCCCCAATTGGAAGGGCTGATC...GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS-3UTR CAA 90 bp TTACATAATAAATATTGTTCACCCAATAAAATCATGTCTCAACTCCCACCCACCAGTTCCTGCAGCTGGTaGTGGAGTCGTCGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: LHNKYCSPNKIMSQLPPTSSCSW*WSRRRS
Trigger: GGAGCGGCGACGACTCCACAACCAGCTGCAGGAACT...GGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp GGCCCCAGTCAGGGTGGAGCGCCGATCATCAGATCGTaGGAGGCTAAGGCCCGTCGGGGGATCAGAGGGTCC +
Preference number: 6 (lower is better)
Translates to: GPSQGGAPIIRS*EAKARRGIRGS
Trigger: GGACCCTCTGATCCCCCGACGGGCCTTAGCCTCTCACGATCTGATGATCGGCGCTCCACCCTGACTGGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 72 bp ACACGGGCACTCAGCGTCTCCAGCCTCTGCTGGTCCTaGTCAGCTCGGCTGCGTACACTGGCCAGCTCCCCT +
Preference number: 6 (lower is better)
Translates to: TRALSVSSLCWS*SARLRTLASSP
Trigger: AGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGGACCAGCAGAGGCTGGAGACGCTGAGTGCCCGTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CAA 72 bp GGGTCTAGCCGCTCACTCCCAGCTAGGTCCACAAGGTaGAGCGGAGCGCCACACTGCAGGCCCCGAGCTGCA +
Preference number: 6 (lower is better)
Translates to: GSSRSLPARSTR*SGAPHCRPRAA
Trigger: TGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTTGTGGACCTAGCTGGGAGTGAGCGGCTAGACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp GGTCTAGCCGCTCACTCCCAGCTAGGTCCACAAGGTTaGGCGGAGCGCCACACTGCAGGCCCCGAGCTGCAT +
Preference number: 6 (lower is better)
Translates to: GLAAHSQLGPQG*AERHTAGPELH
Trigger: ATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTTGTGGACCTAGCTGGGAGTGAGCGGCTAGACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 72 bp GCCTTTCCCTGGTCTGCTCAGCTCGGCTGCGTACACTaGCCAGCTCCCCTTCCAGGGTGTTCCGCTCTGTCC +
Preference number: 6 (lower is better)
Translates to: AFPWSAQLGCVH*PAPLPGCSALS
Trigger: GGACAGAGCGGAACACCCTGGAAGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGACCAGGGAAAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114361.9
CDS CAA 72 bp CCCCAGGGTCGTGGCCTGCTCCTGGACCTCTCTGAGTaGCTCCCGAAGACCCCGGTTCTCCAGTTCCAGCGT +
Preference number: 6 (lower is better)
Translates to: PQGRGLLLDLSE*LPKTPVLQFQR
Trigger: ACGCTGGAACTGGAGAACCGGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CAA 72 bp CTTGCCCGACGGATCTCACACTCGCCCCCTTGTCCCTaGCGGGGCCCAGTAGCTAGCAGGTCTCGAACGGTC +
Preference number: 6 (lower is better)
Translates to: LARRISHSPPCP*RGPVASRSRTV
Trigger: GACCGTTCGAGACCTGCTAGCTACTGGGCCCCGCAAGGGACAAGGGGGCGAGTGTGAGATCCGTCGGGCAAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp CTGTCCCCAGGGTCGTGGCCTGCTCCTGGACCTCTCTaGGTTGCTCCCGAAGACCCCGGTTCTCCAGTTCCA +
Preference number: 6 (lower is better)
Translates to: LSPGSWPAPGPL*VAPEDPGSPVP
Trigger: TGGAACTGGAGAACCGGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGGACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS TCA 72 bp CTGGCTCCTCAGCACTGCAGTGTGGCCCTGGGTCTGTaGCACTGTGCTGAGGAGTGGTCCTCTGGGACGGGA +
Preference number: 6 (lower is better)
Translates to: LAPQHCSVALGL*HCAEEWSSGTG
Trigger: TCCCGTCCCAGAGGACCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGTGCTGAGGAGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173386.2
CDS GCA 72 bp CCTGAAGCAGCCTTTCCCTGGTCTGCTCAGCTCGGCTaGGTACACTGGCCAGCTCCCCTTCCAGGGTGTTCC +
Preference number: 6 (lower is better)
Translates to: PEAAFPWSAQLG*VHWPAPLPGCS
Trigger: GGAACACCCTGGAAGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGACCAGGGAAAGGCTGCTTCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114361.9
CDS CAA 90 bp GATTCCCCTTCGAGGACAGGGCGCACGCGGCAGAACACCCGGATATaGCCCTTCAGTTCCTGCAGCTGGTTGTGGAGTCGTCGCCGCTCC +
Preference number: 6 (lower is better)
Translates to: DSPSRTGRTRQNTRI*PFSSCSWLWSRRRS
Trigger: GGAGCGGCGACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCGAAGGGGAATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CAA 90 bp TGTAAGCCAGGGTCTAGCCGCTCACTCCCAGCTAGGTCCACAAGGTaGAGCGGAGCGCCACACTGCAGGCCCCGAGCTGCATGCTCTCCA +
Preference number: 6 (lower is better)
Translates to: CKPGSSRSLPARSTR*SGAPHCRPRAACSP
Trigger: TGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTTGTGGACCTAGCTGGGAGTGAGCGGCTAGACCCTGGCTTACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CAA 90 bp CCGCTCTGTCCCCAGGGTCGTGGCCTGCTCCTGGACCTCTCTGAGTaGCTCCCGAAGACCCCGGTTCTCCAGTTCCAGCGTTTGAGTCTT +
Preference number: 6 (lower is better)
Translates to: PLCPQGRGLLLDLSE*LPKTPVLQFQRLSL
Trigger: AAGACTCAAACGCTGGAACTGGAGAACCGGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGGACAGAGCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS GCA 72 bp CAGCTCTCTTCCCTACCACCACAGGAGCAGTGGATGTaGCAGGCTTCTGGGCAGGAGCAGCGGGAACTGGCT +
Preference number: 6 (lower is better)
Translates to: QLSSLPPQEQWM*QASGQEQRELA
Trigger: AGCCAGTTCCCGCTGCTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCTGTGGTGGTAGGGAAGAGAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS GCA 72 bp TGGCCTGAAACCTCCTCTCCTGCTCCTCCAGCTGGGTaGTCAGTGTGCTCCGCTCCTCCTGCAATTGCAGCC +
Preference number: 6 (lower is better)
Translates to: WPETSSPAPPAG*SVCSAPPAIAA
Trigger: GGCTGCAATTGCAGGAGGAGCGGAGCACACTGAGCACCCAGCTGGAGGAGCAGGAGAGGAGGTTTCAGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 72 bp CGAGGACAGGGCGCACGCGGCAGAACACCCGGATATTaGCCTTCAGTTCCTGCAGCTGGTTGTGGAGTCGTC +
Preference number: 6 (lower is better)
Translates to: RGQGARGRTPGY*PSVPAAGCGVV
Trigger: GACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 72 bp CCAGCTAGGTCCACAAGGTTGAGCGGAGCGCCACACTaGAGGCCCCGAGCTGCATGCTCTCCAGAAATCTGC +
Preference number: 6 (lower is better)
Translates to: PARSTRLSGAPH*RPRAACSPEIC
Trigger: GCAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTTGTGGACCTAGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 72 bp CGCTCATCTCCTGGGCCACAGAGAACAGATGCCGCATaGCCCGAGGGATCAGCCCTTCCAATTGGGGGTCTC +
Preference number: 6 (lower is better)
Translates to: RSSPGPQRTDAA*PEGSALPIGGL
Trigger: GAGACCCCCAATTGGAAGGGCTGATCCCTCGGGCCATGCGGCATCTGTTCTCTGTGGCCCAGGAGATGAGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 72 bp GCGGGAACTGGCTTCTGGCTCCTCAGCACTGCAGTGTaGCCCTGGGTCTGTGACACTGTGCTGAGGAGTGGT +
Preference number: 6 (lower is better)
Translates to: AGTGFWLLSTAV*PWVCDTVLRSG
Trigger: ACCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGTGCTGAGGAGCCAGAAGCCAGTTCCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173386.2
CDS CCA 72 bp GTTTGCCAGCTCTCTTCCCTACCACCACAGGAGCAGTaGATGTGCCAGGCTTCTGGGCAGGAGCAGCGGGAA +
Preference number: 6 (lower is better)
Translates to: VCQLSSLPPQEQ*MCQASGQEQRE
Trigger: TTCCCGCTGCTCCTGCCCAGAAGCCTGGCACATCCACTGCTCCTGTGGTGGTAGGGAAGAGAGCTGGCAAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CAA 72 bp TCACACAACTGGCCCTTCAGGTCCCAGGCAGGGCGTTaGCCAGCTCTCTTCCCTACCACCACAGGAGCAGTG +
Preference number: 6 (lower is better)
Translates to: SHNWPFRSQAGR*PALFPTTTGAV
Trigger: CACTGCTCCTGTGGTGGTAGGGAAGAGAGCTGGCAAACGCCCTGCCTGGGACCTGAAGGGCCAGTTGTGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CAA 72 bp TCGAGGACAGGGCGCACGCGGCAGAACACCCGGATATaGCCCTTCAGTTCCTGCAGCTGGTTGTGGAGTCGT +
Preference number: 6 (lower is better)
Translates to: SRTGRTRQNTRI*PFSSCSWLWSR
Trigger: ACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CAA 90 bp TTCTTTGCAGGCTCCAAGGCATCCTCCATCTGGTCAGGACCCCTCTaGAGCCTGCTTGCTGACAGGGGCACTCGGGAGGAGGACTTCACC +
Preference number: 6 (lower is better)
Translates to: FFAGSKASSIWSGPL*SLLADRGTREEDFT
Trigger: GGTGAAGTCCTCCTCCCGAGTGCCCCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACCAGATGGAGGATGCCTTGGAGCCTGCAAAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS TCA 72 bp GAGCTGCAGTGTGGCCCTGGGTCTGTGACACTGTGCTaGGGAGTGGTCCTCTGGGACGGGATGTGTCAACTT +
Preference number: 6 (lower is better)
Translates to: ELQCGPGSVTLC*GVVLWDGMCQL
Trigger: AAGTTGACACATCCCGTCCCAGAGGACCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp GAGCACCCACGAGGTCCTGTCTTCTTAGGGCCTTTCTaGGCTGCAGTGTGGCCCTGGGTCTGTGACACTGTG +
Preference number: 6 (lower is better)
Translates to: EHPRGPVFLGPF*AAVWPWVCDTV
Trigger: CACAGTGTCACAGACCCAGGGCCACACTGCAGCTCAGAAAGGCCCTAAGAAGACAGGACCTCGTGGGTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp GCACTGCAGTGTGGCCCTGGGTCTGTGACACTGTGCTaGGGAGTGGTCCTCTGGGACGGGATGTGTCAACTT +
Preference number: 6 (lower is better)
Translates to: ALQCGPGSVTLC*GVVLWDGMCQL
Trigger: AAGTTGACACATCCCGTCCCAGAGGACCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173386.2
CDS GCA 72 bp ACGCGGCAGAACACCCGGATATTGCCCTTCAGTTCCTaGAGCTGGTTGTGGAGTCGTCGCCGCTCCATCTCT +
Preference number: 6 (lower is better)
Translates to: TRQNTRILPFSS*SWLWSRRRSIS
Trigger: AGAGATGGAGCGGCGACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 72 bp GGCATTGGTGACAGTAAGCTCCTCACTTCCTGGGCTTaGCCGACGGATCTCACACTCGCCCCCTTGTCCCTT +
Preference number: 6 (lower is better)
Translates to: GIGDSKLLTSWA*PTDLTLAPLSL
Trigger: AAGGGACAAGGGGGCGAGTGTGAGATCCGTCGGGCAAGCCCAGGAAGTGAGGAGCTTACTGTCACCAATGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
ENSMUST00000173982.2
CDS GCA 72 bp AAGGTTGAGCGGAGCGCCACACTGCAGGCCCCGAGCTaGATGCTCTCCAGAAATCTGCAGCTGGAACACACT +
Preference number: 6 (lower is better)
Translates to: KVERSATLQAPS*MLSRNLQLEHT
Trigger: AGTGTGTTCCAGCTGCAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCGCTCAACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 72 bp GTCCGTTTCTTTGCAGGCTCCAAGGCATCCTCCATCTaGTCAGGACCCCTCTTGAGCCTGCTTGCTGACAGG +
Preference number: 6 (lower is better)
Translates to: VRFFAGSKASSI*SGPLLSLLADR
Trigger: CCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACCAGATGGAGGATGCCTTGGAGCCTGCAAAGAAACGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS GCA 72 bp TGGACAAGCATGGCGATCTCCTCAAACACTTCCTCCTaGTTGCTTCCCGGCGGGAACACCCGATCAAAGGAG +
Preference number: 6 (lower is better)
Translates to: WTSMAISSNTSS*LLPGGNTRSKE
Trigger: CTCCTTTGATCGGGTGTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGAGGAGATCGCCATGCTTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS CCA 72 bp CAGAACACCCGGATATTGCCCTTCAGTTCCTGCAGCTaGTTGTGGAGTCGTCGCCGCTCCATCTCTAACCCA +
Preference number: 6 (lower is better)
Translates to: QNTRILPFSSCS*LWSRRRSISNP
Trigger: TGGGTTAGAGATGGAGCGGCGACGACTCCACAACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS GCA 72 bp TGGTCCTCTGGGACGGGATGTGTCAACTTTGGTCACTaGACCCATGACTCGTGTCCGTTTCTTTGCAGGCTC +
Preference number: 6 (lower is better)
Translates to: WSSGTGCVNFGH*THDSCPFLCRL
Trigger: GAGCCTGCAAAGAAACGGACACGAGTCATGGGTGCAGTGACCAAAGTTGACACATCCCGTCCCAGAGGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS GCA 72 bp TGCTCAGCCAGTAAGGTCACCTGGGCTTCAGTCTTCTaGCGAAGACACACCACCTCTTCTTGGCTGCTTGAC +
Preference number: 6 (lower is better)
Translates to: CSASKVTWASVF*RRHTTSSWLLD
Trigger: GTCAAGCAGCCAAGAAGAGGTGGTGTGTCTTCGGCAGAAGACTGAAGCCCAGGTGACCTTACTGGCTGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp TGGGACGGGATGTGTCAACTTTGGTCACTGCACCCATaGCTCGTGTCCGTTTCTTTGCAGGCTCCAAGGCAT +
Preference number: 6 (lower is better)
Translates to: WDGMCQLWSLHP*LVSVSLQAPRH
Trigger: ATGCCTTGGAGCCTGCAAAGAAACGGACACGAGTCATGGGTGCAGTGACCAAAGTTGACACATCCCGTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CAA 72 bp CTGAGGAGTGGTCCTCTGGGACGGGATGTGTCAACTTaGGTCACTGCACCCATGACTCGTGTCCGTTTCTTT +
Preference number: 6 (lower is better)
Translates to: LRSGPLGRDVST*VTAPMTRVRFF
Trigger: AAAGAAACGGACACGAGTCATGGGTGCAGTGACCAAAGTTGACACATCCCGTCCCAGAGGACCACTCCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114361.9
ENSMUST00000173386.2
ENSMUST00000173492.9
CDS CAA 72 bp TCTTCTGCCGAAGACACACCACCTCTTCTTGGCTGCTaGACAGAGCTGCTTCTGTGGCCTGAAACCTCCTCT +
Preference number: 6 (lower is better)
Translates to: SSAEDTPPLLGC*TELLLWPETSS
Trigger: AGAGGAGGTTTCAGGCCACAGAAGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGGTGTGTCTTCGGCAGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp ATAGGCAAAAATGCACACAGGGTAGCCATCCAGTGCTaGCTGGACAAGCATGGCGATCTCCTCAAACACTTC +
Preference number: 6 (lower is better)
Translates to: IGKNAHRVAIQC*LDKHGDLLKHF
Trigger: GAAGTGTTTGAGGAGATCGCCATGCTTGTCCAGTCAGCACTGGATGGCTACCCTGTGTGCATTTTTGCCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9
CDS TCA 72 bp GCATGCTCTCCAGAAATCTGCAGCTGGAACACACTATaGCTGCGTGATGATCTCTTATTTTGGGCAGTGTGG +
Preference number: 6 (lower is better)
Translates to: ACSPEICSWNTL*LRDDLLFWAVW
Trigger: CCACACTGCCCAAAATAAGAGATCATCACGCAGTCATAGTGTGTTCCAGCTGCAGATTTCTGGAGAGCATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114361.9
ENSMUST00000173492.9