RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KIF3C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020668

Ensembl transcript IDs: ENSMUST00000020999.7, ENSMUST00000219895.2, ENSMUST00000220210.2

Found 362 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGGCCTGCCTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTaGTGTGACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTC +
Preference number: 1 (lower is better)
Translates to: WGLPKSLPSQENRRL*CDHGRTRHLKQGDL
Trigger: GAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAGGCAGGCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp GCAAAGGCCATAGGAGAGTTCCAGATCCCCTGGAGACGCCTGGTGTaGATGCTGGAAACCCACCTTGGGTCCCTCTGGAACAGCAGCAAG +
Preference number: 1 (lower is better)
Translates to: AKAIGEFQIPWRRLV*MLETHLGSLWNSSK
Trigger: CTTGCTGCTGTTCCAGAGGGACCCAAGGTGGGTTTCCAGCATCCACACCAGGCGTCTCCAGGGGATCTGGAACTCTCCTATGGCCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 90 bp CCTGAGTGTCAATCACAGGGTTCTGACAGAAACCTGGGATCCCTTTaGAGGGCAGGCAGCCGCAAGGCTCCGCCATTCAGTCCAGTGGAG +
Preference number: 1 (lower is better)
Translates to: PECQSQGSDRNLGSL*RAGSRKAPPFSPVE
Trigger: CTCCACTGGACTGAATGGCGGAGCCTTGCGGCTGCCTGCCCTTCAAAGGGATCCCAGGTTTCTGTCAGAACCCTGTGATTGACACTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CCA 90 bp TGTGCACAGGTCAATGCAAAGGCCATAGGAGAGTTCCAGATCCCCTaGAGACGCCTGGTGTGGATGCTGGAAACCCACCTTGGGTCCCTC +
Preference number: 1 (lower is better)
Translates to: CAQVNAKAIGEFQIP*RRLVWMLETHLGSL
Trigger: GAGGGACCCAAGGTGGGTTTCCAGCATCCACACCAGGCGTCTCCAGGGGATCTGGAACTCTCCTATGGCCTTTGCATTGACCTGTGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 90 bp GCACTGTCTTCTCAGGCACTAGCCATCTTCCCTCTTGGAGGCAGCTaGCATAAGGAGCTTGGGGCCTGCCTAAGTCTCTCCCTAGCCAAG +
Preference number: 1 (lower is better)
Translates to: ALSSQALAIFPLGGS*HKELGACLSLSLAK
Trigger: CTTGGCTAGGGAGAGACTTAGGCAGGCCCCAAGCTCCTTATGTCAGCTGCCTCCAAGAGGGAAGATGGCTAGTGCCTGAGAAGACAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR TCA 90 bp GCTCCTCCAGAAGACCTGAGTTCAAGTCCCAGCACTCACGTCAGGTaGCTCACAACCACCTGTAACAACAGCTCCAGGGGGTCCATGCCT +
Preference number: 1 (lower is better)
Translates to: APPEDLSSSPSTHVR*LTTTCNNSSRGSMP
Trigger: AGGCATGGACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGCTGGGACTTGAACTCAGGTCTTCTGGAGGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 90 bp AAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGATTGCCCCTaGCGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGG +
Preference number: 1 (lower is better)
Translates to: KELLGEERALKKDCP*RQATGSPHCSISCR
Trigger: CCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCGTCAGGGGCAATCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp GAAGCCACAAGTTCCTGCCAAGGCTGGAAAGCCTGGCATGAGTCTTaGGCTACTGAAAGTCCTTGGGAAAGAGCCCTGGAGGCTGGAAGA +
Preference number: 1 (lower is better)
Translates to: EATSSCQGWKAWHES*ATESPWERALEAGR
Trigger: TCTTCCAGCCTCCAGGGCTCTTTCCCAAGGACTTTCAGTAGCCCAAGACTCATGCCAGGCTTTCCAGCCTTGGCAGGAACTTGTGGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp AGTGGAGTTGGGGAAGCCACAAGTTCCTGCCAAGGCTGGAAAGCCTaGCATGAGTCTTGGGCTACTGAAAGTCCTTGGGAAAGAGCCCTG +
Preference number: 1 (lower is better)
Translates to: SGVGEATSSCQGWKA*HESWATESPWERAL
Trigger: CAGGGCTCTTTCCCAAGGACTTTCAGTAGCCCAAGACTCATGCCAGGCTTTCCAGCCTTGGCAGGAACTTGTGGCTTCCCCAACTCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp AGAAGAGAGGGCACTGAAGAAAGATTGCCCCTGACGGCAGGCCACTaGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAA +
Preference number: 1 (lower is better)
Translates to: RREGTEERLPLTAGH*FSTLLHFLQVSWWQ
Trigger: TTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCGTCAGGGGCAATCTTTCTTCAGTGCCCTCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp CTTCTGACCACACCTTGGGCCCAGCCTTTGGCTGCGGTGCTGAAGTaGGGTGTATTGTGCTATAAGACTGTGAGGGTAGTGGACCAGACA +
Preference number: 1 (lower is better)
Translates to: LLTTPWAQPLAAVLK*GVLCYKTVRVVDQT
Trigger: TGTCTGGTCCACTACCCTCACAGTCTTATAGCACAATACACCCCACTTCAGCACCGCAGCCAAAGGCTGGGCCCAAGGTGTGGTCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CCA 90 bp TCACTGGAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTaGAGAAGAGAGGGCACTGAAGAAAGATTGCCCCTGACGGCAGGC +
Preference number: 1 (lower is better)
Translates to: SLERWPDGLFSKGAS*RREGTEERLPLTAG
Trigger: GCCTGCCGTCAGGGGCAATCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTCCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR TCA 90 bp AGTCCAGTGGAGCAGCAGAGAGCACAACAGTGGAGTCAAAGCAAATaGTGCGCAGACAGGACCCTGAATGGTGCAAGAGGGGCTCATTTC +
Preference number: 1 (lower is better)
Translates to: SPVEQQRAQQWSQSK*CADRTLNGARGAHF
Trigger: GAAATGAGCCCCTCTTGCACCATTCAGGGTCCTGTCTGCGCATCATTTGCTTTGACTCCACTGTTGTGCTCTCTGCTGCTCCACTGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR GCA 90 bp GAAGAGGAAGCAGCCAGACGTGGCTCAGCAGTTAAGAGCACATATTaGTCCTCCAGAAGACCTGAGTTCAAGTCCCAGCACTCACGTCAG +
Preference number: 1 (lower is better)
Translates to: EEEAARRGSAVKSTY*SSRRPEFKSQHSRQ
Trigger: CTGACGTGAGTGCTGGGACTTGAACTCAGGTCTTCTGGAGGAGCAATATGTGCTCTTAACTGCTGAGCCACGTCTGGCTGCTTCCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 90 bp TTGTCAACTGTGTTCATCTCAACAGGGCTGGGGCCTGCAGGCTGCTaGCAGCACCAAGTTAAGGTGCATTTCCACTCAACAGAAAGGCCT +
Preference number: 1 (lower is better)
Translates to: LSTVFISTGLGPAGC*QHQVKVHFHSTERP
Trigger: AGGCCTTTCTGTTGAGTGGAAATGCACCTTAACTTGGTGCTGCCAGCAGCCTGCAGGCCCCAGCCCTGTTGAGATGAACACAGTTGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR TCA 90 bp GAGCACAACAGTGGAGTCAAAGCAAATGATGCGCAGACAGGACCCTaGATGGTGCAAGAGGGGCTCATTTCCCAAAAGGTCGAGAAGGAC +
Preference number: 1 (lower is better)
Translates to: EHNSGVKANDAQTGP*MVQEGLISQKVEKD
Trigger: GTCCTTCTCGACCTTTTGGGAAATGAGCCCCTCTTGCACCATTCAGGGTCCTGTCTGCGCATCATTTGCTTTGACTCCACTGTTGTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR GCA 90 bp ATAGCTCCAGGACTTGGAAAAGATTCAACACTGGGCTCGGCATGGTaGTACACACCTGTAATCTGCACTCTAGAGGCAGAGGCAGGAAAG +
Preference number: 1 (lower is better)
Translates to: IAPGLGKDSTLGSAW*YTPVICTLEAEAGK
Trigger: CTTTCCTGCCTCTGCCTCTAGAGTGCAGATTACAGGTGTGTAGCACCATGCCGAGCCCAGTGTTGAATCTTTTCCAAGTCCTGGAGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR GCA 90 bp TTATTGTCAACTGTGTTCATCTCAACAGGGCTGGGGCCTGCAGGCTaGTGGCAGCACCAAGTTAAGGTGCATTTCCACTCAACAGAAAGG +
Preference number: 1 (lower is better)
Translates to: LLSTVFISTGLGPAG*WQHQVKVHFHSTER
Trigger: CCTTTCTGTTGAGTGGAAATGCACCTTAACTTGGTGCTGCCAGCAGCCTGCAGGCCCCAGCCCTGTTGAGATGAACACAGTTGACAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CCA 90 bp AGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTaGACTTGGATGGGTAAAGGAAGCACTGTCTTCTCAGGCACTAGC +
Preference number: 1 (lower is better)
Translates to: SIHGCSPSHTRRWKL*TWMGKGSTVFSGTS
Trigger: GCTAGTGCCTGAGAAGACAGTGCTTCCTTTACCCATCCAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp CACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTaGTTGACAATTCCCAATCCAAGGGCAGAGAGGGCTGGCAATGAA +
Preference number: 1 (lower is better)
Translates to: HTAPFPAGLMVATTV*LTIPNPRAERAGNE
Trigger: TTCATTGCCAGCCCTCTCTGCCCTTGGATTGGGAATTGTCAACCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR GCA 90 bp CCTGATCCATCTGCCTCTGTCTCCCAGGTGCTGGGATTAAAGGTGTaGACCACCGAACTCAGTTCAAACCCAACTGTAAGAAACTTCCTT +
Preference number: 1 (lower is better)
Translates to: PDPSASVSQVLGLKV*TTELSSNPTVRNFL
Trigger: AAGGAAGTTTCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCACCTGGGAGACAGAGGCAGATGGATCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 90 bp CACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTaGATGGGTAAAGGAAGCACTGTCTTCTCAGGCACTAGCCATCTT +
Preference number: 1 (lower is better)
Translates to: HGCSPSHTRRWKLWT*MGKGSTVFSGTSHL
Trigger: AAGATGGCTAGTGCCTGAGAAGACAGTGCTTCCTTTACCCATCCAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 90 bp GGTGTATTGTGCTATAAGACTGTGAGGGTAGTGGACCAGACAATGTaGAGTCAGTGTGTCCAAGTGATGAATGGGGTGACTCATGCAGCT +
Preference number: 1 (lower is better)
Translates to: GVLCYKTVRVVDQTM*SQCVQVMNGVTHAA
Trigger: AGCTGCATGAGTCACCCCATTCATCACTTGGACACACTGACTCCACATTGTCTGGTCCACTACCCTCACAGTCTTATAGCACAATACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR TCA 90 bp TATTTTCTCTTGTTTGCTATGGAGTCAAGGGAGACTTTGAACTCCTaGTCCATCTGCCTCTGTCTCCCAGGTGCTGGGATTAAAGGTGTG +
Preference number: 1 (lower is better)
Translates to: YFLLFAMESRETLNS*SICLCLPGAGIKGV
Trigger: CACACCTTTAATCCCAGCACCTGGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCAAACAAGAGAAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR GCA 90 bp TTAGTTATATGTATGTCTGTATCTGTAGGAGGGTACGTTCACGTGTaGACAGGTCAATGCAAAGGCCATAGGAGAGTTCCAGATCCCCTG +
Preference number: 1 (lower is better)
Translates to: LVICMSVSVGGYVHV*TGQCKGHRRVPDPL
Trigger: CAGGGGATCTGGAACTCTCCTATGGCCTTTGCATTGACCTGTGCACACGTGAACGTACCCTCCTACAGATACAGACATACATATAACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 90 bp AATAGAAATTTACTTATCACTTGCAATACCTGGAGACATTTGGGGTaGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTA +
Preference number: 1 (lower is better)
Translates to: NRNLLITCNTWRHLG*SQRKVRKDQATQVV
Trigger: TACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGTAAATTTCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR TCA 90 bp TTATTATTTATTTTCTCTTGTTTGCTATGGAGTCAAGGGAGACTTTaGACTCCTGATCCATCTGCCTCTGTCTCCCAGGTGCTGGGATTA +
Preference number: 1 (lower is better)
Translates to: LLFIFSCLLWSQGRL*TPDPSASVSQVLGL
Trigger: TAATCCCAGCACCTGGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCAAACAAGAGAAAATAAATAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 90 bp AAGCAACACAAAACAGAAATAGAGAGCTATCGATCTCTTTTTCCTTaGAGGCATATCAGAACCACAGTTAGGGAAGGGATCCAAGTTGGT +
Preference number: 1 (lower is better)
Translates to: KQHKTEIESYRSLFP*RHIRTTVREGIQVG
Trigger: ACCAACTTGGATCCCTTCCCTAACTGTGGTTCTGATATGCCTCCAAGGAAAAAGAGATCGATAGCTCTCTATTTCTGTTTTGTGTTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR GCA 90 bp GGCAGGAGCACCTCTTCTGACCACACCTTGGGCCCAGCCTTTGGCTGCGGTGCTCAGGACCCTGAATGGTaGAAGAGGGGCTCATTTCCC +
Preference number: 2 (lower is better)
Translates to: GRSTSSDHTLGPAFGCGAQDPEW*KRGSFP
Trigger: GGGAAATGAGCCCCTCTTGCACCATTCAGGGTCCTG...AGCACCGCAGCCAAAGGCTGGGCCCAAGGTGTGGTCAGAAGAGGTGCTCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CCA 90 bp CAGGCAGCCGCAAGGCTCCGCCATTCAGTCCAGTGGAGCAGCAGAGAGCACAACGGGGGTCCATGCCTCTaGCCTTTGCATTCATGTATG +
Preference number: 2 (lower is better)
Translates to: QAAARLRHSVQWSSREHNGGPCL*PLHSCM
Trigger: CATACATGAATGCAAAGGCCAGAGGCATGGACCCCC...GTTGTGCTCTCTGCTGCTCCACTGGACTGAATGGCGGAGCCTTGCGGCTGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR TCA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTGAGAAGAGAGGGCACTaGAGAAAGATTGCCCCTGAC +
Preference number: 2 (lower is better)
Translates to: RALVLSAVDRDLTASGNSEKRGH*RKIAPD
Trigger: GTCAGGGGCAATCTTTCTTCAGTGCCCTCTCTTCTC...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR TCA 90 bp GCATTCAGTAAGGGGAGAAGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACTGGAGAGGTGGCCTaGTGGTTTGTTCTCCAAAGG +
Preference number: 2 (lower is better)
Translates to: AFSKGRRALVLSAVDRDLTGEVA*WFVLQR
Trigger: CCTTTGGAGAACAAACCATCAGGCCACCTCTCCAGT...CAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCTTCTCCCCTTACTGAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp TCAGTCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGAGAACAGGAGGCTGTaGTGTGACCATGGCAGGACC +
Preference number: 2 (lower is better)
Translates to: SVHRECKPNTIRTPLTFRENRRL*CDHGRT
Trigger: GGTCCTGCCATGGTCACAGCACAGCCTCCTGTTCTC...TCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp GCATTCAGTAAGGGGAGAAGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGAGTTCCTGCCAAGGCTaGAAAGCCTGGCATGAGTCT +
Preference number: 2 (lower is better)
Translates to: AFSKGRRALVLSAVDRDLSSCQG*KAWHES
Trigger: AGACTCATGCCAGGCTTTCCAGCCTTGGCAGGAACT...CAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCTTCTCCCCTTACTGAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR TCA 90 bp GCACCTGGGAAGCTGAGGCAGGAATACCTCAATTTTGAGGCAAGGTGGGCCACAGGTCACAAAGGAAGGTaGGGAAGGACCAAGCCACAC +
Preference number: 2 (lower is better)
Translates to: APGKLRQEYLNFEARWATGHKGR*GRTKPH
Trigger: GTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACC...TGTGGCCCACCTTGCCTCAAAATTGAGGTATTCCTGCCTCAGCTTCCCAGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR-3UTR TCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCAAGCATCAGATGGGATaGACCAGGGATGGGCAGCCT +
Preference number: 2 (lower is better)
Translates to: ERWPDGLFSKGASWRREGKHQMG*TRDGQP
Trigger: AGGCTGCCCATCCCTGGTTCATCCCATCTGATGCTT...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR TCA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGCCTCTTGGAGGCAGCTaGCATAAGGAGCTTGGGGCC +
Preference number: 2 (lower is better)
Translates to: KHPRLLTITHKKMETVDLPLGGS*HKELGA
Trigger: GGCCCCAAGCTCCTTATGTCAGCTGCCTCCAAGAGG...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp TTGGGGTGGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAAGAGCCCTGGAGGCTaGAAGAGTCTAGGGCCCAGA +
Preference number: 2 (lower is better)
Translates to: LGWSQRKVRKDQATQVVKKSPGG*KSLGPR
Trigger: TCTGGGCCCTAGACTCTTCCAGCCTCCAGGGCTCTT...CTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR TCA 90 bp GGCAGCACCAAGTTAAGGTGCATTTCCACTCAACAGAAAGGCCTCCATCCTAAACCTCTTGGAGGCAGCTaGCATAAGGAGCTTGGGGCC +
Preference number: 2 (lower is better)
Translates to: GSTKLRCISTQQKGLHPKPLGGS*HKELGA
Trigger: GGCCCCAAGCTCCTTATGTCAGCTGCCTCCAAGAGG...TTTAGGATGGAGGCCTTTCTGTTGAGTGGAAATGCACCTTAACTTGGTGCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR GCA 90 bp AGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGAGAACAGGAGGCTGTaGTGTGACCATGGCAGGACC +
Preference number: 2 (lower is better)
Translates to: SQKASTAAHHHTQEDGNCENRRL*CDHGRT
Trigger: GGTCCTGCCATGGTCACAGCACAGCCTCCTGTTCTC...ACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGGAAGCCACAAGTTCCTaGCAAGGCTGGAAAGCCTGG +
Preference number: 2 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWEATSS*QGWKAW
Trigger: CCAGGCTTTCCAGCCTTGGCAGGAACTTGTGGCTTC...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp AAGGAGACGCCCAACATTAGGGCACTGGAAATCCTAACTCCCTGTTTTCTCTCCAAGAGCCCTGGAGGCTaGAAGAGTCTAGGGCCCAGA +
Preference number: 2 (lower is better)
Translates to: KETPNIRALEILTPCFLSKSPGG*KSLGPR
Trigger: TCTGGGCCCTAGACTCTTCCAGCCTCCAGGGCTCTT...GGAGAGAAAACAGGGAGTTAGGATTTCCAGTGCCCTAATGTTGGGCGTCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CCA 90 bp TCAGGGGGAGGTCCCTCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCAGTTCCTGCCAAGGCTaGAAAGCCTGGCATGAGTCT +
Preference number: 2 (lower is better)
Translates to: SGGGPSMPSSHQEISTHSSSCQG*KAWHES
Trigger: AGACTCATGCCAGGCTTTCCAGCCTTGGCAGGAACT...GCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGAGGGACCTCCCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CCA 90 bp GGTAGTGGACCAGACAATGTGGAGTCAGTGTGTCCAAGTGATGAATGGGGTGACTGGAGACGCCTGGTGTaGATGCTGGAAACCCACCTT +
Preference number: 2 (lower is better)
Translates to: GSGPDNVESVCPSDEWGDWRRLV*MLETHL
Trigger: AAGGTGGGTTTCCAGCATCCACACCAGGCGTCTCCA...GTCACCCCATTCATCACTTGGACACACTGACTCCACATTGTCTGGTCCACTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR TCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTAAGCATCAGATGGGATaGACCAGGGATGGGCAGCCT +
Preference number: 2 (lower is better)
Translates to: RARKHPRLLTITHKKMETKHQMG*TRDGQP
Trigger: AGGCTGCCCATCCCTGGTTCATCCCATCTGATGCTT...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR TCA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTAAGCATCAGATGGGATaGACCAGGGATGGGCAGCCT +
Preference number: 2 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLKHQMG*TRDGQP
Trigger: AGGCTGCCCATCCCTGGTTCATCCCATCTGATGCTT...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCCACCTGATAGTTTCTTaGCCCTTCACACACACTGGT +
Preference number: 2 (lower is better)
Translates to: ERWPDGLFSKGASWRREGHLIVS*PFTHTG
Trigger: ACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTG...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACAGAAGATGGAAACTGTaGACTTGGATGGGTAAAGGA +
Preference number: 2 (lower is better)
Translates to: STGSASPTPLGHLSPSEDRRWKL*TWMGKG
Trigger: TCCTTTACCCATCCAAGTCCACAGTTTCCATCTTCT...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGAGAAGCCACAAGTTCCTaGCAAGGCTGGAAAGCCTGG +
Preference number: 2 (lower is better)
Translates to: DGLFSKGASWRREGTEEREATSS*QGWKAW
Trigger: CCAGGCTTTCCAGCCTTGGCAGGAACTTGTGGCTTC...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCAACTGTGGACTTGGATaGGTAAAGGAAGCACTGTCT +
Preference number: 2 (lower is better)
Translates to: ERWPDGLFSKGASWRREGNCGLG*VKEALS
Trigger: AGACAGTGCTTCCTTTACCCATCCAAGTCCACAGTT...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp TCCCAGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGGATaGGTAAAGGAAGCACTGTCT +
Preference number: 2 (lower is better)
Translates to: SQSQKASTAAHHHTQEDGNCGLG*VKEALS
Trigger: AGACAGTGCTTCCTTTACCCATCCAAGTCCACAGTT...TCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp TGCTATGGAGTCAAGGGAGACTTTGAACTCCTGATCCATCTGCCTCTGTCTCCCTTCCTGCAGGTCTCATaGTGGCAACAACTGTTTGGT +
Preference number: 2 (lower is better)
Translates to: CYGVKGDFELLIHLPLSPFLQVS*WQQLFG
Trigger: ACCAAACAGTTGTTGCCACCATGAGACCTGCAGGAA...GGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR-3UTR TCA 90 bp AAGGAGACGCCCAACATTAGGGCACTGGAAATCCTAACTCCCTGTTTTCTCTCCACAGTGATGAGAACATaGAGGAGCCACATCTCACTG +
Preference number: 2 (lower is better)
Translates to: KETPNIRALEILTPCFLSTVMRT*RSHISL
Trigger: CAGTGAGATGTGGCTCCTTCATGTTCTCATCACTGT...GGAGAGAAAACAGGGAGTTAGGATTTCCAGTGCCCTAATGTTGGGCGTCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR TCA 90 bp GGCAGCACCAAGTTAAGGTGCATTTCCACTCAACAGAAAGGCCTCCATCCTAAAAGTCAAGGGAGACTTTaGACTCCTGATCCATCTGCC +
Preference number: 2 (lower is better)
Translates to: GSTKLRCISTQQKGLHPKSQGRL*TPDPSA
Trigger: GGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACT...TTTAGGATGGAGGCCTTTCTGTTGAGTGGAAATGCACCTTAACTTGGTGCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR GCA 90 bp AAGGAGACGCCCAACATTAGGGCACTGGAAATCCTAACTCCCTGTTTTCTCTCCGTGTGCACAGGTCAATaGAAAGGCCATAGGAGAGTT +
Preference number: 2 (lower is better)
Translates to: KETPNIRALEILTPCFLSVCTGQ*KGHRRV
Trigger: AACTCTCCTATGGCCTTTGCATTGACCTGTGCACAC...GGAGAGAAAACAGGGAGTTAGGATTTCCAGTGCCCTAATGTTGGGCGTCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CCA 90 bp GGTAGTGGACCAGACAATGTGGAGTCAGTGTGTCCAAGTGATGAATGGGGTGACAACTGTGGACTTGGATaGGTAAAGGAAGCACTGTCT +
Preference number: 2 (lower is better)
Translates to: GSGPDNVESVCPSDEWGDNCGLG*VKEALS
Trigger: AGACAGTGCTTCCTTTACCCATCCAAGTCCACAGTT...GTCACCCCATTCATCACTTGGACACACTGACTCCACATTGTCTGGTCCACTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CCA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGGGAGCCACATCTCACTaGAGAGGTGGCCTGATGGTT +
Preference number: 2 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRGATSH*RGGLMV
Trigger: AACCATCAGGCCACCTCTCCAGTGAGATGTGGCTCC...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp GGCAGCACCAAGTTAAGGTGCATTTCCACTCAACAGAAAGGCCTCCATCCTAAAGCTGCGGTGCTGAAGTaGGGTGTATTGTGCTATAAG +
Preference number: 2 (lower is better)
Translates to: GSTKLRCISTQQKGLHPKAAVLK*GVLCYK
Trigger: CTTATAGCACAATACACCCCACTTCAGCACCGCAGC...TTTAGGATGGAGGCCTTTCTGTTGAGTGGAAATGCACCTTAACTTGGTGCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR GCA 90 bp AGATCTGTCAGCTTCATGTCTTACATAAGTAACAGACCTGCTCCTAAGCCAGGGACTGGTTCTCCACACTaGTCCATTTCCTGCAGGTCT +
Preference number: 2 (lower is better)
Translates to: RSVSFMSYISNRPAPKPGTGSPH*SISCRS
Trigger: AGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGT...CCCTGGCTTAGGAGCAGGTCTGTTACTTATGTAAGACATGAAGCTGACAGATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR GCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGACTGGTTCTCCACACTaGTCCATTTCCTGCAGGTCT +
Preference number: 2 (lower is better)
Translates to: TYHLQYLETFGVVTKEGETGSPH*SISCRS
Trigger: AGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGT...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp TGCTATGGAGTCAAGGGAGACTTTGAACTCCTGATCCATCTGCCTCTGTCTCCCGTGGCAACAACTGTTTaGTTGACAATTCCCAATCCA +
Preference number: 2 (lower is better)
Translates to: CYGVKGDFELLIHLPLSPVATTV*LTIPNP
Trigger: TGGATTGGGAATTGTCAACCAAACAGTTGTTGCCAC...GGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CAA 90 bp CTGGGTTTGTTTCTTGTCTTAGCTGGAGGCACAAAGCAAAGGATTTaGTTATCTGCATTCAGTAAGGGGAGAAGGGCTCTGGTTCTCTCC +
Preference number: 2 (lower is better)
Translates to: LGLFLVLAGGTKQRI*LSAFSKGRRALVLS
Trigger: GGAGAGAACCAGAGCCCTTCTCCCCTTACTGAATGCAGATAACAAAATCCTTTGCTTTGTGCCTCCAGCTAAGACAAGAAACAAACCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGCACCTGATAGTTTCTTaGCCCTTCACACACACTGGT +
Preference number: 2 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEHLIVS*PFTHTG
Trigger: ACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTG...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp GTCCCTCTGGAACAGCAGCAAGTACTATTAACCACTGAACCTTCTCTCCAGCTTGTTAAGAGCACATATTaGTCCTCCAGAAGACCTGAG +
Preference number: 2 (lower is better)
Translates to: VPLEQQQVLLTTEPSLQLVKSTY*SSRRPE
Trigger: CTCAGGTCTTCTGGAGGAGCAATATGTGCTCTTAAC...AAGCTGGAGAGAAGGTTCAGTGGTTAATAGTACTTGCTGCTGTTCCAGAGGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR-3UTR CCA 90 bp TGCTATGGAGTCAAGGGAGACTTTGAACTCCTGATCCATCTGCCTCTGTCTCCCAAATCTGGCAAAAATTaGGCCTGGGTTTGTTTCTTG +
Preference number: 2 (lower is better)
Translates to: CYGVKGDFELLIHLPLSPKSGKN*AWVCFL
Trigger: CAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTT...GGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR-3UTR GCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTCACCTGATAGTTTCTTaGCCCTTCACACACACTGGT +
Preference number: 2 (lower is better)
Translates to: QRKVRKDQATQVVKNGLIHLIVS*PFTHTG
Trigger: ACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTG...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CCA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGTTCCTGCAGGTCTCATaGTGGCAACAACTGTTTGGT +
Preference number: 2 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRFLQVS*WQQLFG
Trigger: ACCAAACAGTTGTTGCCACCATGAGACCTGCAGGAA...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CAA 90 bp TTCCTTGGAGGCATATCAGAACCACAGTTAGGGAAGGGATCCAAGTaGGTTGGAGAACAGCTAGGACTGGGTGGTTTTAATGTAAACTTT +
Preference number: 2 (lower is better)
Translates to: FLGGISEPQLGKGSK*VGEQLGLGGFNVNF
Trigger: AAAGTTTACATTAAAACCACCCAGTCCTAGCTGTTCTCCAACCAACTTGGATCCCTTCCCTAACTGTGGTTCTGATATGCCTCCAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CCA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGAAGAAGATGGAAACTGTaGACTTGGATGGGTAAAGGA +
Preference number: 2 (lower is better)
Translates to: DGLFSKGASWRREGTEERRRWKL*TWMGKG
Trigger: TCCTTTACCCATCCAAGTCCACAGTTTCCATCTTCT...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR GCA 90 bp TCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTCCTGTTCCAGAGAATTATTTTCTCTTGTTTaGTATGGAGTCAAGGGAGAC +
Preference number: 2 (lower is better)
Translates to: SMPSSHQEISTHSSCSRELFSLV*YGVKGD
Trigger: GTCTCCCTTGACTCCATAGCAAACAAGAGAAAATAA...TTCTCTGGAACAGGAGCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CCA 72 bp ATAGGAGAGTTCCAGATCCCCTGGAGACGCCTGGTGTaGATGCTGGAAACCCACCTTGGGTCCCTCTGGAAC +
Preference number: 3 (lower is better)
Translates to: IGEFQIPWRRLV*MLETHLGSLWN
Trigger: GTTCCAGAGGGACCCAAGGTGGGTTTCCAGCATCCACACCAGGCGTCTCCAGGGGATCTGGAACTCTCCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 72 bp TCTCAGGCACTAGCCATCTTCCCTCTTGGAGGCAGCTaGCATAAGGAGCTTGGGGCCTGCCTAAGTCTCTCC +
Preference number: 3 (lower is better)
Translates to: SQALAIFPLGGS*HKELGACLSLS
Trigger: GGAGAGACTTAGGCAGGCCCCAAGCTCCTTATGTCAGCTGCCTCCAAGAGGGAAGATGGCTAGTGCCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR GCA 72 bp CCTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTaGTGTGACCATGGCAGGACCAGGCATCTCAAGCAG +
Preference number: 3 (lower is better)
Translates to: PKSLPSQENRRL*CDHGRTRHLKQ
Trigger: CTGCTTGAGATGCCTGGTCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR GCA 72 bp CCAGAGAGAATCGAGCACAGCTCAGTCCACCGGGAGTaGAAGCCCAACACCATTAGGACACCTCTCACCTTC +
Preference number: 3 (lower is better)
Translates to: PERIEHSSVHRE*KPNTIRTPLTF
Trigger: GAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGACTGAGCTGTGCTCGATTCTCTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp ATCCAAGGGCAGAGAGGGCTGGCAATGAAGTGGAGTTaGGGAAGCCACAAGTTCCTGCCAAGGCTGGAAAGC +
Preference number: 3 (lower is better)
Translates to: IQGQRGLAMKWS*GSHKFLPRLES
Trigger: GCTTTCCAGCCTTGGCAGGAACTTGTGGCTTCCCCAACTCCACTTCATTGCCAGCCCTCTCTGCCCTTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp GGCACTGAAGAAAGATTGCCCCTGACGGCAGGCCACTaGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCA +
Preference number: 3 (lower is better)
Translates to: GTEERLPLTAGH*FSTLLHFLQVS
Trigger: TGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCGTCAGGGGCAATCTTTCTTCAGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR TCA 72 bp CTTGGAGAAGAGAGGGCACTGAAGAAAGATTGCCCCTaGCGGCAGGCCACTGGTTCTCCACACTGCTCCATT +
Preference number: 3 (lower is better)
Translates to: LGEERALKKDCP*RQATGSPHCSI
Trigger: AATGGAGCAGTGTGGAGAACCAGTGGCCTGCCGTCAGGGGCAATCTTTCTTCAGTGCCCTCTCTTCTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR TCA 72 bp GAAGACCTGAGTTCAAGTCCCAGCACTCACGTCAGGTaGCTCACAACCACCTGTAACAACAGCTCCAGGGGG +
Preference number: 3 (lower is better)
Translates to: EDLSSSPSTHVR*LTTTCNNSSRG
Trigger: CCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGCTGGGACTTGAACTCAGGTCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR GCA 72 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTaGAGGTCTCATGGTGGCAACAACTGTTTGGTTGAC +
Preference number: 3 (lower is better)
Translates to: RQATGSPHCSIS*RSHGGNNCLVD
Trigger: GTCAACCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR GCA 72 bp ACTGTGTTCATCTCAACAGGGCTGGGGCCTGCAGGCTaGTGGCAGCACCAAGTTAAGGTGCATTTCCACTCA +
Preference number: 3 (lower is better)
Translates to: TVFISTGLGPAG*WQHQVKVHFHS
Trigger: TGAGTGGAAATGCACCTTAACTTGGTGCTGCCAGCAGCCTGCAGGCCCCAGCCCTGTTGAGATGAACACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CCA 72 bp AGTTCCTGCCAAGGCTGGAAAGCCTGGCATGAGTCTTaGGCTACTGAAAGTCCTTGGGAAAGAGCCCTGGAG +
Preference number: 3 (lower is better)
Translates to: SSCQGWKAWHES*ATESPWERALE
Trigger: CTCCAGGGCTCTTTCCCAAGGACTTTCAGTAGCCCAAGACTCATGCCAGGCTTTCCAGCCTTGGCAGGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp GGGGAAGCCACAAGTTCCTGCCAAGGCTGGAAAGCCTaGCATGAGTCTTGGGCTACTGAAAGTCCTTGGGAA +
Preference number: 3 (lower is better)
Translates to: GEATSSCQGWKA*HESWATESPWE
Trigger: TTCCCAAGGACTTTCAGTAGCCCAAGACTCATGCCAGGCTTTCCAGCCTTGGCAGGAACTTGTGGCTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp CTGGAGACGCCTGGTGTGGATGCTGGAAACCCACCTTaGGTCCCTCTGGAACAGCAGCAAGTACTATTAACC +
Preference number: 3 (lower is better)
Translates to: LETPGVDAGNPP*VPLEQQQVLLT
Trigger: GGTTAATAGTACTTGCTGCTGTTCCAGAGGGACCCAAGGTGGGTTTCCAGCATCCACACCAGGCGTCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 72 bp ACACCTTGGGCCCAGCCTTTGGCTGCGGTGCTGAAGTaGGGTGTATTGTGCTATAAGACTGTGAGGGTAGTG +
Preference number: 3 (lower is better)
Translates to: TPWAQPLAAVLK*GVLCYKTVRVV
Trigger: CACTACCCTCACAGTCTTATAGCACAATACACCCCACTTCAGCACCGCAGCCAAAGGCTGGGCCCAAGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR TCA 72 bp GAGCAGCAGAGAGCACAACAGTGGAGTCAAAGCAAATaGTGCGCAGACAGGACCCTGAATGGTGCAAGAGGG +
Preference number: 3 (lower is better)
Translates to: EQQRAQQWSQSK*CADRTLNGARG
Trigger: CCCTCTTGCACCATTCAGGGTCCTGTCTGCGCATCATTTGCTTTGACTCCACTGTTGTGCTCTCTGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR GCA 72 bp ACCAGCAGTCTCCCAGAGCCAGAAAGCATCCACGGCTaGTCACCATCACACACAAGAAGATGGAAACTGTGG +
Preference number: 3 (lower is better)
Translates to: TSSLPEPESIHG*SPSHTRRWKLW
Trigger: CCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGAGACTGCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR GCA 72 bp GCAGCCAGACGTGGCTCAGCAGTTAAGAGCACATATTaGTCCTCCAGAAGACCTGAGTTCAAGTCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: AARRGSAVKSTY*SSRRPEFKSQH
Trigger: GTGCTGGGACTTGAACTCAGGTCTTCTGGAGGAGCAATATGTGCTCTTAACTGCTGAGCCACGTCTGGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 72 bp TTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGTTaGCAATTCCCAATCCAAGGGCAGAGAGGGCTGGCA +
Preference number: 3 (lower is better)
Translates to: FLQVSWWQQLFG*QFPIQGQRGLA
Trigger: TGCCAGCCCTCTCTGCCCTTGGATTGGGAATTGTCAACCAAACAGTTGTTGCCACCATGAGACCTGCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR GCA 72 bp CAAGAGGGGCTCATTTCCCAAAAGGTCGAGAAGGACTaGTGCCCTTTGCCACACAGAACTTCTGGCAGATCT +
Preference number: 3 (lower is better)
Translates to: QEGLISQKVEKD*CPLPHRTSGRS
Trigger: AGATCTGCCAGAAGTTCTGTGTGGCAAAGGGCAGCAGTCCTTCTCGACCTTTTGGGAAATGAGCCCCTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CAA 90 bp TCCCAGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGATCACCTGATAGTTTCTaGCCCCTTCACACACACTGG +
Preference number: 3 (lower is better)
Translates to: SQSQKASTAAHHHTQEDGSPDSF*PLHTHW
Trigger: CCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGA...TCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CAA 90 bp TGCTGGAAACCCACCTTGGGTCCCTCTGGAACAGCAGCAAGTACTATTAACCACAGGTGGCCTGATGGTTaGTTCTCCAAAGGAGCTTCT +
Preference number: 3 (lower is better)
Translates to: CWKPTLGPSGTAASTINHRWPDG*FSKGAS
Trigger: AGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCT...GTGGTTAATAGTACTTGCTGCTGTTCCAGAGGGACCCAAGGTGGGTTTCCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 72 bp AGTGGAGTCAAAGCAAATGATGCGCAGACAGGACCCTaGATGGTGCAAGAGGGGCTCATTTCCCAAAAGGTC +
Preference number: 3 (lower is better)
Translates to: SGVKANDAQTGP*MVQEGLISQKV
Trigger: GACCTTTTGGGAAATGAGCCCCTCTTGCACCATTCAGGGTCCTGTCTGCGCATCATTTGCTTTGACTCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR GCA 72 bp TCTGCCTCTGTCTCCCAGGTGCTGGGATTAAAGGTGTaGACCACCGAACTCAGTTCAAACCCAACTGTAAGA +
Preference number: 3 (lower is better)
Translates to: SASVSQVLGLKV*TTELSSNPTVR
Trigger: TCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCACCTGGGAGACAGAGGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR-3UTR CAA 90 bp GTCCCTCTGGAACAGCAGCAAGTACTATTAACCACTGAACCTTCTCTCCAGCTTGGCAATGAAGTGGAGTaGGGGAAGCCACAAGTTCCT +
Preference number: 3 (lower is better)
Translates to: VPLEQQQVLLTTEPSLQLGNEVE*GKPQVP
Trigger: AGGAACTTGTGGCTTCCCCAACTCCACTTCATTGCC...AAGCTGGAGAGAAGGTTCAGTGGTTAATAGTACTTGCTGCTGTTCCAGAGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR TCA 72 bp TTGTTTGCTATGGAGTCAAGGGAGACTTTGAACTCCTaGTCCATCTGCCTCTGTCTCCCAGGTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: LFAMESRETLNS*SICLCLPGAGI
Trigger: AATCCCAGCACCTGGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCAAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR-3UTR CAA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGGGCAATGAAGTGGAGTaGGGGAAGCCACAAGTTCCT +
Preference number: 3 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEGNEVE*GKPQVP
Trigger: AGGAACTTGTGGCTTCCCCAACTCCACTTCATTGCC...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CAA 90 bp GTGCTGGGATTAAAGGTGTGCACCACCGAACTCAGTTCAAACCCAACTGTAAGAAGGTGGCCTGATGGTTaGTTCTCCAAAGGAGCTTCT +
Preference number: 3 (lower is better)
Translates to: VLGLKVCTTELSSNPTVRRWPDG*FSKGAS
Trigger: AGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCT...TCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR GCA 72 bp TGTATGTCTGTATCTGTAGGAGGGTACGTTCACGTGTaGACAGGTCAATGCAAAGGCCATAGGAGAGTTCCA +
Preference number: 3 (lower is better)
Translates to: CMSVSVGGYVHV*TGQCKGHRRVP
Trigger: TGGAACTCTCCTATGGCCTTTGCATTGACCTGTGCACACGTGAACGTACCCTCCTACAGATACAGACATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 72 bp GGCTGCTCACCATCACACACAAGAAGATGGAAACTGTaGACTTGGATGGGTAAAGGAAGCACTGTCTTCTCA +
Preference number: 3 (lower is better)
Translates to: GCSPSHTRRWKL*TWMGKGSTVFS
Trigger: TGAGAAGACAGTGCTTCCTTTACCCATCCAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp TGCTATAAGACTGTGAGGGTAGTGGACCAGACAATGTaGAGTCAGTGTGTCCAAGTGATGAATGGGGTGACT +
Preference number: 3 (lower is better)
Translates to: CYKTVRVVDQTM*SQCVQVMNGVT
Trigger: AGTCACCCCATTCATCACTTGGACACACTGACTCCACATTGTCTGGTCCACTACCCTCACAGTCTTATAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR-3UTR CAA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGATCACCTGATAGTTTCTaGCCCCTTCACACACACTGG +
Preference number: 3 (lower is better)
Translates to: DGLFSKGASWRREGTEERSPDSF*PLHTHW
Trigger: CCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGA...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CAA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGAGGTGGCCTGATGGTTaGTTCTCCAAAGGAGCTTCT +
Preference number: 3 (lower is better)
Translates to: TYHLQYLETFGVVTKEGERWPDG*FSKGAS
Trigger: AGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCT...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR-3UTR CAA 90 bp TCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTCCTGTTCCAGAGAAGGTGGCAACAACTGTTaGGTTGACAATTCCCAATCC +
Preference number: 3 (lower is better)
Translates to: SMPSSHQEISTHSSCSREGGNNC*VDNSQS
Trigger: GGATTGGGAATTGTCAACCAAACAGTTGTTGCCACC...TTCTCTGGAACAGGAGCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR TCA 72 bp ATTTTCTCTTGTTTGCTATGGAGTCAAGGGAGACTTTaGACTCCTGATCCATCTGCCTCTGTCTCCCAGGTG +
Preference number: 3 (lower is better)
Translates to: IFSCLLWSQGRL*TPDPSASVSQV
Trigger: CACCTGGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCAAACAAGAGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR GCA 72 bp ACAGAGAACAGGCAGAGACATCACCTGATAGTTTCTTaGCCCTTCACACACACTGGTACACACACTAGTTCA +
Preference number: 3 (lower is better)
Translates to: TENRQRHHLIVS*PFTHTGTHTSS
Trigger: TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATGTCTCTGCCTGTTCTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp TTACTTATCACTTGCAATACCTGGAGACATTTGGGGTaGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACA +
Preference number: 3 (lower is better)
Translates to: LLITCNTWRHLG*SQRKVRKDQAT
Trigger: TGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR TCA 72 bp ACCTCAATTTTGAGGCAAGGTGGGCCACAGAGTAAGTaGATACTAGTAGCAAGCCAGGACCACACATTAAAA +
Preference number: 3 (lower is better)
Translates to: TSILRQGGPQSK*ILVASQDHTLK
Trigger: TTTTAATGTGTGGTCCTGGCTTGCTACTAGTATTCACTTACTCTGTGGCCCACCTTGCCTCAAAATTGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CCA 72 bp GCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTaGAGGCACAAAGCAAAGGATTTTGTTATCTGCATT +
Preference number: 3 (lower is better)
Translates to: AKIGPGFVSCLS*RHKAKDFVICI
Trigger: AATGCAGATAACAAAATCCTTTGCTTTGTGCCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CCA 72 bp AAAACAGAAATAGAGAGCTATCGATCTCTTTTTCCTTaGAGGCATATCAGAACCACAGTTAGGGAAGGGATC +
Preference number: 3 (lower is better)
Translates to: KTEIESYRSLFP*RHIRTTVREGI
Trigger: GATCCCTTCCCTAACTGTGGTTCTGATATGCCTCCAAGGAAAAAGAGATCGATAGCTCTCTATTTCTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CCA 72 bp AACAAGGTTTCAGTTTATAGAATGGGCTATCATCACTaGCAATTCTTCTACCTCAACCTGAGTGACTCCAAA +
Preference number: 3 (lower is better)
Translates to: NKVSVYRMGYHH*QFFYLNLSDSK
Trigger: TTTGGAGTCACTCAGGTTGAGGTAGAAGAATTGCCAGTGATGATAGCCCATTCTATAAACTGAAACCTTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp GGCAGGAGCACCTCTTCTGACCACACCTTGGGCCCAGCCTTTGGCTGCGGTGCTGGGACCCCATTGCCATaGCAACCCGAGCATACTGGC +
Preference number: 4 (lower is better)
Translates to: GRSTSSDHTLGPAFGCGAGTPLP*QPEHTG
Trigger: GCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCC...AGCACCGCAGCCAAAGGCTGGGCCCAAGGTGTGGTCAGAAGAGGTGCTCCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CCA 90 bp GGCAGGAGCACCTCTTCTGACCACACCTTGGGCCCAGCCTTTGGCTGCGGTGCTCGAACCAGGTACTGCTaGTTCTGGGAGCGGGAGATG +
Preference number: 4 (lower is better)
Translates to: GRSTSSDHTLGPAFGCGARTRYC*FWEREM
Trigger: CATCTCCCGCTCCCAGAACCAGCAGTACCTGGTTCG...AGCACCGCAGCCAAAGGCTGGGCCCAAGGTGTGGTCAGAAGAGGTGCTCCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAGCAGCTCTGTAGCCTaGTGCTCCCGCCGTAGATCC +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGSSSVA*CSRRRS
Trigger: GGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCT...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GCACCTGGGAAGCTGAGGCAGGAATACCTCAATTTTGAGGCAAGGTGGGCCACAAACCCCGCGGAGCTCTaGCTCCACCCAGGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: APGKLRQEYLNFEARWATNPAEL*LHPGPL
Trigger: CAGGGGACCTGGGTGGAGCCAGAGCTCCGCGGGGTT...TGTGGCCCACCTTGCCTCAAAATTGAGGTATTCCTGCCTCAGCTTCCCAGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
3UTR CAA 72 bp AATACCACAGGCAGGAGCACCTCTTCTGACCACACCTaGGGCCCAGCCTTTGGCTGCGGTGCTGAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: NTTGRSTSSDHT*GPAFGCGAEVG
Trigger: CCCCACTTCAGCACCGCAGCCAAAGGCTGGGCCCAAGGTGTGGTCAGAAGAGGTGCTCCTGCCTGTGGTATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCCATTCATGTGGGTGCTaGCCACTGCTCGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGHSCGC*PLLGLG
Trigger: ACCAAGCCCGAGCAGTGGGCAGCACCCACATGAATG...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCGAGCAGCAATCACATTaGCCAGGGCGGACAGCGAGA +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGEQQSH*PGRTAR
Trigger: TCTCGCTGTCCGCCCTGGGCAATGTGATTGCTGCTC...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CAGGCAGCCGCAAGGCTCCGCCATTCAGTCCAGTGGAGCAGCAGAGAGCACAACGGCCTTGTACTTGGCTaGAAGCAGCTCTGTAGCCTG +
Preference number: 4 (lower is better)
Translates to: QAAARLRHSVQWSSREHNGLVLG*KQLCSL
Trigger: CAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGCC...GTTGTGCTCTCTGCTGCTCCACTGGACTGAATGGCGGAGCCTTGCGGCTGCCTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCAACCCCGCGGAGCTCTaGCTCCACCCAGGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: ERWPDGLFSKGASWRREGNPAEL*LHPGPL
Trigger: CAGGGGACCTGGGTGGAGCCAGAGCTCCGCGGGGTT...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCCCCTTCTTCTCCAGCTaGGCCTTCAAGCGAGCGATC +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGPFFSS*AFKRAI
Trigger: GATCGCTCGCTTGAAGGCCCAGCTGGAGAAGAAGGG...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GCATTCAGTAAGGGGAGAAGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGAGGCTGCGGTCATCCTaGATGGCAGCCTTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: AFSKGRRALVLSAVDRDLRLRSS*MAAFSS
Trigger: GGAGGAGAAGGCTGCCATCCAGGATGACCGCAGCCT...CAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCTTCTCCCCTTACTGAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GCATTCAGTAAGGGGAGAAGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGTCCAGCTGGCACCAGTaGCTGGAACCTCCACTGCTC +
Preference number: 4 (lower is better)
Translates to: AFSKGRRALVLSAVDRDLSSWHQ*LEPPLL
Trigger: GAGCAGTGGAGGTTCCAGCCACTGGTGCCAGCTGGA...CAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCTTCTCCCCTTACTGAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCATGAGCTGTGGAGGGTaGAGGCATCCGCTGAGGACT +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGMSCGG*RHPLRT
Trigger: AGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCAT...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACGAGGTCATGGATGCATaGGCTGTGGAGGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: STGSASPTPLGHLSPSEDEVMDA*AVEGGG
Trigger: GCCTCCACCCTCCACAGCTCATGCATCCATGACCTC...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCAGGGGGAGGTCCCTCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCGTGGGTGCTGCCCACTaGTCGGGCTTGGTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: SGGGPSMPSSHQEISTHSVGAAH*SGLVPQ
Trigger: CTGGGGAACCAAGCCCGAGCAGTGGGCAGCACCCAC...GCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGAGGGACCTCCCCCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTGAGCAGCAATCACATTaGCCAGGGCGGACAGCGAGA +
Preference number: 4 (lower is better)
Translates to: RALVLSAVDRDLTASGNSEQQSH*PGRTAR
Trigger: TCTCGCTGTCCGCCCTGGGCAATGTGATTGCTGCTC...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTCCAGGTAGGGGATGTGGGTaGTCCTGTTGCCAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: ALTSGDSQPPVTTAPGGPGRGCG*SCCQPE
Trigger: CTCTGGCTGGCAACAGGAGCACCCACATCCCCTACC...TGGACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CCA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACGGGACCCCATTGCCATaGCAACCCGAGCATACTGGC +
Preference number: 4 (lower is better)
Translates to: STGSASPTPLGHLSPSEDGTPLP*QPEHTG
Trigger: GCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCC...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTATGAGCTGTGGAGGGTaGAGGCATCCGCTGAGGACT +
Preference number: 4 (lower is better)
Translates to: RALVLSAVDRDLTASGNSMSCGG*RHPLRT
Trigger: AGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCAT...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTTGTGGGTGCTCCTGTTaGCAGCCAGAGCAGCAATCA +
Preference number: 4 (lower is better)
Translates to: RALVLSAVDRDLTASGNSCGCSC*QPEQQS
Trigger: TGATTGCTGCTCTGGCTGGCAACAGGAGCACCCACA...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CCAGCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTCCTCACTCACAAGGCTaGGGTCATCCTGGATGGCAG +
Preference number: 4 (lower is better)
Translates to: PALTSGDSQPPVTTAPGGPHSQG*GHPGWQ
Trigger: CTGCCATCCAGGATGACCGCAGCCTTGTGAGTGAGG...ACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp TCAGTCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGCTGGAACCTCCACTaGTCCTCCTCACAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SVHRECKPNTIRTPLTFRGWNLH*SSSQSR
Trigger: CCTGGACTGTGAGGAGGAGCAGTGGAGGTTCCAGCC...TCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCTGGGAGCGGGAGATGTaGGTGAAGATGTGCTCAAAG +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGWEREM*VKMCSK
Trigger: CTTTGAGCACATCTTCACCCACATCTCCCGCTCCCA...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCTCTTGCCTGGCTCCTTaGATAGCAGGTCTCGGATCT +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGSCLAP*IAGLGS
Trigger: AGATCCGAGACCTGCTATCCAAGGAGCCAGGCAAGA...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGCCCACCACCAGCTGTTaGCTGTGTGGCTGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWPTTSC*LCGWPS
Trigger: GGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGG...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGTCCAGCTGGCACCAGTaGCTGGAACCTCCACTGCTC +
Preference number: 4 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKSSWHQ*LEPPLL
Trigger: GAGCAGTGGAGGTTCCAGCCACTGGTGCCAGCTGGA...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGGGGACCCCATTGCCATaGCAACCCGAGCATACTGGC +
Preference number: 4 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKGTPLP*QPEHTG
Trigger: GCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCC...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACATGAGCTGTGGAGGGTaGAGGCATCCGCTGAGGACT +
Preference number: 4 (lower is better)
Translates to: STGSASPTPLGHLSPSEDMSCGG*RHPLRT
Trigger: AGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCAT...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CAA 72 bp GGAGCACCTCTTCTGACCACACCTTGGGCCCAGCCTTaGGCTGCGGTGCTGAAGTGGGGTGTATTGTGCTAT +
Preference number: 4 (lower is better)
Translates to: GAPLLTTPWAQP*AAVLKWGVLCY
Trigger: ATAGCACAATACACCCCACTTCAGCACCGCAGCCAAAGGCTGGGCCCAAGGTGTGGTCAGAAGAGGTGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGACATTCATGTGGGTGCTaGCCACTGCTCGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGHSCGC*PLLGLG
Trigger: ACCAAGCCCGAGCAGTGGGCAGCACCCACATGAATG...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGCCTCATTCATGTGGGTaGTGCCCACTGCTCGGGCTT +
Preference number: 4 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKPHSCG*CPLLGL
Trigger: AAGCCCGAGCAGTGGGCAGCACCCACATGAATGAGG...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCCCTTCAGGGCCTCGCTaGCCTTGGTCTTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: ERWPDGLFSKGASWRREGPSGPR*PWSYWP
Trigger: TGGCCAGTAAGACCAAGGCCAGCGAGGCCCTGAAGG...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGCGAACCAGGTACTGCTaGTTCTGGGAGCGGGAGATG +
Preference number: 4 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKRTRYC*FWEREM
Trigger: CATCTCCCGCTCCCAGAACCAGCAGTACCTGGTTCG...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGCCCACCACCAGCTGTTaGCTGTGTGGCTGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: KHPRLLTITHKKMETVDLPTTSC*LCGWPS
Trigger: GGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGG...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCAGGGGGAGGTCCCTCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTCAGCAGTGTGTCCTTaGGGTCCTCGTTCACCCGCG +
Preference number: 4 (lower is better)
Translates to: SGGGPSMPSSHQEISTHSSAVCP*GPRSPA
Trigger: CGCGGGTGAACGAGGACCCCAAGGACACACTGCTGA...GCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGAGGGACCTCCCCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CCA 90 bp TCAGTCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGATCTTCGTGTTGGTCCTaGATCTCGGCCTTCACCGCC +
Preference number: 4 (lower is better)
Translates to: SVHRECKPNTIRTPLTFRSSCWS*ISAFTA
Trigger: GGCGGTGAAGGCCGAGATCCAGGACCAACACGAAGA...TCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTCCAGCTCTGTATCTGGGATaGGACCCCATTGCCATGGCA +
Preference number: 4 (lower is better)
Translates to: ALTSGDSQPPVTTAPGGPALYLG*DPIAMA
Trigger: TGCCATGGCAATGGGGTCCCATCCCAGATACAGAGC...TGGACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCTTTCAGCTCTGTATCTaGGATGGGACCCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGFQLCI*DGTPLP
Trigger: TGGCAATGGGGTCCCATCCCAGATACAGAGCTGAAA...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCCTCAAAGATAGCCGGTaGGGACACATCCAGTTCCAA +
Preference number: 4 (lower is better)
Translates to: RQATGSPHCSISCRSHGGLKDSR*GHIQFQ
Trigger: TTGGAACTGGATGTGTCCCCACCGGCTATCTTTGAG...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp CCAGCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTGTGCCGTTGAAACCCTaGAGCACTGAGTCTATCAGG +
Preference number: 4 (lower is better)
Translates to: PALTSGDSQPPVTTAPGGVPLKP*STESIR
Trigger: CCTGATAGACTCAGTGCTTCAGGGTTTCAACGGCAC...ACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR TCA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGTGTTGCTCGTTGGTGTaGTCCATGATGTTCCGCCCC +
Preference number: 4 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKCCSLV*SMMFRP
Trigger: GGGGCGGAACATCATGGATCACACCAACGAGCAACA...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGATGTTGCTCGTTGGTGTaGTCCATGATGTTCCGCCCC +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGCCSLV*SMMFRP
Trigger: GGGGCGGAACATCATGGATCACACCAACGAGCAACA...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TGCTATGGAGTCAAGGGAGACTTTGAACTCCTGATCCATCTGCCTCTGTCTCCCGAGGTCATGGATGCATaGGCTGTGGAGGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: CYGVKGDFELLIHLPLSPEVMDA*AVEGGG
Trigger: GCCTCCACCCTCCACAGCTCATGCATCCATGACCTC...GGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR TCA 90 bp TGCTGGAAACCCACCTTGGGTCCCTCTGGAACAGCAGCAAGTACTATTAACCACGAGGTCATGGATGCATaGGCTGTGGAGGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: CWKPTLGPSGTAASTINHEVMDA*AVEGGG
Trigger: GCCTCCACCCTCCACAGCTCATGCATCCATGACCTC...GTGGTTAATAGTACTTGCTGCTGTTCCAGAGGGACCCAAGGTGGGTTTCCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR GCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGATGTGGGTGCTCCTGTTaGCAGCCAGAGCAGCAATCA +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGCGCSC*QPEQQS
Trigger: TGATTGCTGCTCTGGCTGGCAACAGGAGCACCCACA...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCCCAGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGACCTCACTCACAAGGCTaGGGTCATCCTGGATGGCAG +
Preference number: 4 (lower is better)
Translates to: SQSQKASTAAHHHTQEDGPHSQG*GHPGWQ
Trigger: CTGCCATCCAGGATGACCGCAGCCTTGTGAGTGAGG...TCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGAAGCAGCATCTCCTGCTaGATTTCCCGTTCACGGCGT +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGSSISC*ISRSRR
Trigger: ACGCCGTGAACGGGAAATGCAGCAGGAGATGCTGCT...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACAACAGAGGTCATGGATaGATGAGCTGTGGAGGGTGG +
Preference number: 4 (lower is better)
Translates to: STGSASPTPLGHLSPSEDNRGHG*MSCGGW
Trigger: CCACCCTCCACAGCTCATGCATCCATGACCTCTGTT...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTACCACTGTTGCAGGGTaGAAAGGAACAGAGGTCATG +
Preference number: 4 (lower is better)
Translates to: RALVLSAVDRDLTASGNSTTVAG*KGTEVM
Trigger: CATGACCTCTGTTCCTTTGCACCCTGCAACAGTGGT...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGCCTTCAGGGCCTCGCTaGCCTTGGTCTTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWPSGPR*PWSYWP
Trigger: TGGCCAGTAAGACCAAGGCCAGCGAGGCCCTGAAGG...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCAGTCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGTAGCTGTGAGAAGCTaGACCCAGTGTGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: SVHRECKPNTIRTPLTFRVAVRS*TQCGHH
Trigger: ATGGTGGCCACACTGGGTCCAGCTTCTCACAGCTAC...TCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCAAGCTGCCTCCAAGATaGGCTGGGGTGGGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: ERWPDGLFSKGASWRREGKLPPR*AGVGGD
Trigger: ATCACCACCCACCCCAGCCCATCTTGGAGGCAGCTT...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CCTGTAACAACAGCTCCAGGGGGTCCATGCCTCTGGCCTTTGCATTCATGTATGTCTTCGTGTTGGTCCTaGATCTCGGCCTTCACCGCC +
Preference number: 4 (lower is better)
Translates to: PVTTAPGGPCLWPLHSCMSSCWS*ISAFTA
Trigger: GGCGGTGAAGGCCGAGATCCAGGACCAACACGAAGA...CATACATGAATGCAAAGGCCAGAGGCATGGACCCCCTGGAGCTGTTGTTACAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp GCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTCCAGCCCACCGCAGAAGTTaGACGCTTCTTCATTTGGCT +
Preference number: 4 (lower is better)
Translates to: ALTSGDSQPPVTTAPGGPAHRRS*TLLHLA
Trigger: AGCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGC...TGGACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp TCCCAGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGATGGATGCATGAGCTGTaGAGGGTGGAGGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: SQSQKASTAAHHHTQEDGWMHEL*RVEASA
Trigger: AGCGGATGCCTCCACCCTCCACAGCTCATGCATCCA...TCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
3UTR CAA 72 bp CCTGGAGACGCCTGGTGTGGATGCTGGAAACCCACCTaGGGTCCCTCTGGAACAGCAGCAAGTACTATTAAC +
Preference number: 4 (lower is better)
Translates to: PGDAWCGCWKPT*GPSGTAASTIN
Trigger: GTTAATAGTACTTGCTGCTGTTCCAGAGGGACCCAAGGTGGGTTTCCAGCATCCACACCAGGCGTCTCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR TCA 90 bp TCAGGGGGAGGTCCCTCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCGAAACCCTGAAGCACTaGGTCTATCAGGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: SGGGPSMPSSHQEISTHSETLKH*VYQGPH
Trigger: GTGAGGCCCCTGATAGACTCAGTGCTTCAGGGTTTC...GCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGAGGGACCTCCCCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAGTGGGTGCTGCCCACTaGTCGGGCTTGGTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSVGAAH*SGLVPQ
Trigger: CTGGGGAACCAAGCCCGAGCAGTGGGCAGCACCCAC...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGGGTAGGGGATGTGGGTaGTCCTGTTGCCAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: KHPRLLTITHKKMETVDLGRGCG*SCCQPE
Trigger: CTCTGGCTGGCAACAGGAGCACCCACATCCCCTACC...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGCCTCCTCCAGGTCCTaGCGCACGCGGATGTACTCT +
Preference number: 4 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLASSRS*RTRMYS
Trigger: AGAGTACATCCGCGTGCGGCAGGACCTGGAGGAGGC...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGGCTGGAACCTCCACTaGTCCTCCTCACAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: RARKHPRLLTITHKKMETGWNLH*SSSQSR
Trigger: CCTGGACTGTGAGGAGGAGCAGTGGAGGTTCCAGCC...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTCCAGTTTCACGTCCATaGTCAGAATCTGCTCATGAC +
Preference number: 4 (lower is better)
Translates to: RALVLSAVDRDLTASGNSPVSRP*SESAHD
Trigger: GTCATGAGCAGATTCTGACCATGGACGTGAAACTGG...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGATTTCGCAGAGTCACCTaGCCCAGTTTCACGTCCATG +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGFRRVT*PSFTSM
Trigger: CATGGACGTGAAACTGGGCCAGGTGACTCTGCGAAA...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TTGGGGTGGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGCCCACTGCTCGGGCTTaGTTCCCCAGGTTCATCACA +
Preference number: 4 (lower is better)
Translates to: LGWSQRKVRKDQATQVVKPTARA*FPRFIT
Trigger: TGTGATGAACCTGGGGAACCAAGCCCGAGCAGTGGG...CTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GCATTCAGTAAGGGGAGAAGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGATAACAAAGATGGCATaGGACCGAGAGCTGACCTCA +
Preference number: 4 (lower is better)
Translates to: AFSKGRRALVLSAVDRDLITKMA*DRELTS
Trigger: TGAGGTCAGCTCTCGGTCCCATGCCATCTTTGTTAT...CAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCTTCTCCCCTTACTGAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGCAGCCGGGTTAGCTTaGAGTCCCGGTAGGGGATGT +
Preference number: 4 (lower is better)
Translates to: WPDGLFSKGASWRREGTEAAGLA*SPGRGC
Trigger: ACATCCCCTACCGGGACTCCAAGCTAACCCGGCTGC...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAATCAGCAGTGTGTCCTTaGGGTCCTCGTTCACCCGCG +
Preference number: 4 (lower is better)
Translates to: WPDGLFSKGASWRREGTESAVCP*GPRSPA
Trigger: CGCGGGTGAACGAGGACCCCAAGGACACACTGCTGA...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CCAGCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTTACCACGTAGCTCCATaGTTTCTTCATCGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: PALTSGDSQPPVTTAPGGYHVAP*FLHRGA
Trigger: TGCTCCGCGATGAAGAAACCATGGAGCTACGTGGTA...ACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp GCACCTGGGAAGCTGAGGCAGGAATACCTCAATTTTGAGGCAAGGTGGGCCACAGTTATTCACTCCAGCTaGCACCAGTGGCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: APGKLRQEYLNFEARWATVIHSS*HQWLEP
Trigger: AGGTTCCAGCCACTGGTGCCAGCTGGAGTGAATAAC...TGTGGCCCACCTTGCCTCAAAATTGAGGTATTCCTGCCTCAGCTTCCCAGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
3UTR CAA 72 bp AGGAGCCACATCTCACTGGAGAGGTGGCCTGATGGTTaGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: RSHISLERWPDG*FSKGASWRREG
Trigger: GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTCCAGTGAGATGTGGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGGAAACCCTGAAGCACTaGGTCTATCAGGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWETLKH*VYQGPH
Trigger: GTGAGGCCCCTGATAGACTCAGTGCTTCAGGGTTTC...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAACATGGGACCGAGAGCTaGCCTCATTCATGTGGGTGC +
Preference number: 4 (lower is better)
Translates to: WPDGLFSKGASWRREGTEHGTES*PHSCGC
Trigger: GCACCCACATGAATGAGGTCAGCTCTCGGTCCCATG...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCAGTCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGATCATACAGGTCGGCCTaGTTGGAGCTAGCATCATAC +
Preference number: 4 (lower is better)
Translates to: SVHRECKPNTIRTPLTFRSYRSA*LELASY
Trigger: GTATGATGCTAGCTCCAAGCAGGCCGACCTGTATGA...TCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTCCTCATTCATGTGGGTaGTGCCCACTGCTCGGGCTT +
Preference number: 4 (lower is better)
Translates to: SQKASTAAHHHTQEDGNCPHSCG*CPLLGL
Trigger: AAGCCCGAGCAGTGGGCAGCACCCACATGAATGAGG...ACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGAGCAGCATCTCCTGCTaGATTTCCCGTTCACGGCGT +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWSSISC*ISRSRR
Trigger: ACGCCGTGAACGGGAAATGCAGCAGGAGATGCTGCT...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTCCTGTTCCAGAGAAGCCTCCTCCAGGTCCTaGCGCACGCGGATGTACTCT +
Preference number: 4 (lower is better)
Translates to: SMPSSHQEISTHSSCSREASSRS*RTRMYS
Trigger: AGAGTACATCCGCGTGCGGCAGGACCTGGAGGAGGC...TTCTCTGGAACAGGAGCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGGCCTCCTCCAGGTCCTaGCGCACGCGGATGTACTCT +
Preference number: 4 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEASSRS*RTRMYS
Trigger: AGAGTACATCCGCGTGCGGCAGGACCTGGAGGAGGC...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGAACCACTGTTGCAGGGTaGAAAGGAACAGAGGTCATG +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGTTVAG*KGTEVM
Trigger: CATGACCTCTGTTCCTTTGCACCCTGCAACAGTGGT...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCTCTTGCCTGGCTCCTTaGATAGCAGGTCTCGGATCT +
Preference number: 4 (lower is better)
Translates to: ERWPDGLFSKGASWRREGSCLAP*IAGLGS
Trigger: AGATCCGAGACCTGCTATCCAAGGAGCCAGGCAAGA...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTCTGACCTCATTCATGTaGGTGCTGCCCACTGCTCGG +
Preference number: 4 (lower is better)
Translates to: RARKHPRLLTITHKKMETLTSFM*VLPTAR
Trigger: CCGAGCAGTGGGCAGCACCCACATGAATGAGGTCAG...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTAGGCTGCGGTCATCCTaGATGGCAGCCTTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLRLRSS*MAAFSS
Trigger: GGAGGAGAAGGCTGCCATCCAGGATGACCGCAGCCT...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGAATGTACTCTTCGTGTTaGTCCTGGATCTCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGMYSSC*SWISAF
Trigger: GAAGGCCGAGATCCAGGACCAACACGAAGAGTACAT...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGACACAGCATCAAAAGTaGAGGTCTTGGGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWTQHQK*RSWAAP
Trigger: GGGAGCTGCCCAAGACCTTCACTTTTGATGCTGTGT...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TTGGGGTGGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAGCGGGAGATGTGGGTaGAGATGTGCTCAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: LGWSQRKVRKDQATQVVKSGRCG*RCAQRH
Trigger: ATGCCTTTGAGCACATCTTCACCCACATCTCCCGCT...CTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAGCACGAACCAGGTACTaGTGGTTCTGGGAGCGGGAG +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSARTRY*WFWERE
Trigger: CTCCCGCTCCCAGAACCAGCAGTACCTGGTTCGTGC...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGTTCTCCGAGGTCGCTTaGCCAGCATCCCCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KHPRLLTITHKKMETVDLFSEVA*PASPSS
Trigger: AGAAGAAGGGGATGCTGGGCAAGCGACCTCGGAGAA...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGAAGCAGCTCTGTAGCCTaGTGCTCCCGCCGTAGATCC +
Preference number: 4 (lower is better)
Translates to: DGLFSKGASWRREGTEERSSSVA*CSRRRS
Trigger: GGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCT...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGGCCTTGTACTTGGCTaGAAGCAGCTCTGTAGCCTG +
Preference number: 4 (lower is better)
Translates to: RARKHPRLLTITHKKMETGLVLG*KQLCSL
Trigger: CAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGCC...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAGGCTGGAACCTCCACTaGTCCTCCTCACAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSGWNLH*SSSQSR
Trigger: CCTGGACTGTGAGGAGGAGCAGTGGAGGTTCCAGCC...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGTGGGAGCGGGAGATGTaGGTGAAGATGTGCTCAAAG +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWWEREM*VKMCSK
Trigger: CTTTGAGCACATCTTCACCCACATCTCCCGCTCCCA...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAGCAGCCGGGTTAGCTTaGAGTCCCGGTAGGGGATGT +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSAAGLA*SPGRGC
Trigger: ACATCCCCTACCGGGACTCCAAGCTAACCCGGCTGC...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TTGGGGTGGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGCGAGCGATCTCTTCCTaGAATTCCCTCAGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: LGWSQRKVRKDQATQVVKRAISS*NSLSSV
Trigger: CACACTGCTGAGGGAATTCCAGGAAGAGATCGCTCG...CTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GCACCTGGGAAGCTGAGGCAGGAATACCTCAATTTTGAGGCAAGGTGGGCCACAGTAGCTTGCTTTCCATaGCCTTGTACTTGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: APGKLRQEYLNFEARWATVACFP*PCTWLQ
Trigger: TTGCAGCCAAGTACAAGGCCATGGAAAGCAAGCTAC...TGTGGCCCACCTTGCCTCAAAATTGAGGTATTCCTGCCTCAGCTTCCCAGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGTCCAGCTGGCACCAGTaGCTGGAACCTCCACTGCTC +
Preference number: 4 (lower is better)
Translates to: TYHLQYLETFGVVTKEGESSWHQ*LEPPLL
Trigger: GAGCAGTGGAGGTTCCAGCCACTGGTGCCAGCTGGA...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACGGACGCTTCTTCATTTaGCTGTTATTCACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: STGSASPTPLGHLSPSEDGRFFI*LLFTPA
Trigger: AGCTGGAGTGAATAACAGCCAAATGAAGAAGCGTCC...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAGGAGACGCCCAACATTAGGGCACTGGAAATCCTAACTCCCTGTTTTCTCTCCGCTCTGTATCTGGGATaGGACCCCATTGCCATGGCA +
Preference number: 4 (lower is better)
Translates to: KETPNIRALEILTPCFLSALYLG*DPIAMA
Trigger: TGCCATGGCAATGGGGTCCCATCCCAGATACAGAGC...GGAGAGAAAACAGGGAGTTAGGATTTCCAGTGCCCTAATGTTGGGCGTCTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR TCA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAAGCGGGAGATGTGGGTaGAGATGTGCTCAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: WPDGLFSKGASWRREGTESGRCG*RCAQRH
Trigger: ATGCCTTTGAGCACATCTTCACCCACATCTCCCGCT...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAATTGCCTACTCGGATATaGTCCTGGCCATCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: WPDGLFSKGASWRREGTELPTRI*SWPSEP
Trigger: TGGCTCTGATGGCCAGGATCATATCCGAGTAGGCAA...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCGGAAAAGGCGGTTCATaGTCTTGTTCTTCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: ERWPDGLFSKGASWRREGGKGGS*SCSSPQ
Trigger: CTGAGGAGAAGAACAAGATCATGAACCGCCTTTTCC...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGTCATACAGGTCGGCCTaGTTGGAGCTAGCATCATAC +
Preference number: 4 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWSYRSA*LELASY
Trigger: GTATGATGCTAGCTCCAAGCAGGCCGACCTGTATGA...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGATGTGGGTGAAGATGTaGTCAAAGGCATTCGGGATA +
Preference number: 4 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKMWVKM*SKAFGI
Trigger: TATCCCGAATGCCTTTGAGCACATCTTCACCCACAT...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGATCTTCTAGAAGCTTCTaGTTCTCCTCACTCACAAGG +
Preference number: 4 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGSSRSF*FSSLTR
Trigger: CCTTGTGAGTGAGGAGAAGCAGAAGCTTCTAGAAGA...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAGGGATGGGACCCCATTaGCATGGCAACCCGAGCATA +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSGMGPH*HGNPSI
Trigger: TATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCC...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCAGGGATGGGACCCCATTaGCATGGCAACCCGAGCATA +
Preference number: 4 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASGMGPH*HGNPSI
Trigger: TATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCC...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCACTGACCTCATTCATGTaGGTGCTGCCCACTGCTCGG +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSLTSFM*VLPTAR
Trigger: CCGAGCAGTGGGCAGCACCCACATGAATGAGGTCAG...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCCCAGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAATAACAAAGATGGCATaGGACCGAGAGCTGACCTCA +
Preference number: 4 (lower is better)
Translates to: SQSQKASTAAHHHTQEDGITKMA*DRELTS
Trigger: TGAGGTCAGCTCTCGGTCCCATGCCATCTTTGTTAT...TCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCATCTTCGTGTTGGTCCTaGATCTCGGCCTTCACCGCC +
Preference number: 4 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASSSCWS*ISAFTA
Trigger: GGCGGTGAAGGCCGAGATCCAGGACCAACACGAAGA...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGTGGATGCATGAGCTGTaGAGGGTGGAGGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEWMHEL*RVEASA
Trigger: AGCGGATGCCTCCACCCTCCACAGCTCATGCATCCA...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGATGGATGCATGAGCTGTaGAGGGTGGAGGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: DGLFSKGASWRREGTEERWMHEL*RVEASA
Trigger: AGCGGATGCCTCCACCCTCCACAGCTCATGCATCCA...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TGCTGGAAACCCACCTTGGGTCCCTCTGGAACAGCAGCAAGTACTATTAACCACAAGGAACAGAGGTCATaGATGCATGAGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: CWKPTLGPSGTAASTINHKEQRS*MHELWR
Trigger: CCTCCACAGCTCATGCATCCATGACCTCTGTTCCTT...GTGGTTAATAGTACTTGCTGCTGTTCCAGAGGGACCCAAGGTGGGTTTCCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR TCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTCATGGGACCGAGAGCTaGCCTCATTCATGTGGGTGC +
Preference number: 4 (lower is better)
Translates to: QRKVRKDQATQVVKNGLIHGTES*PHSCGC
Trigger: GCACCCACATGAATGAGGTCAGCTCTCGGTCCCATG...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGCCTTCTTTCTACGACTaGTCTTTCTCCGAGGTCGCT +
Preference number: 4 (lower is better)
Translates to: KHPRLLTITHKKMETVDLPSFYD*SFSEVA
Trigger: AGCGACCTCGGAGAAAGAGCAGTCGTAGAAAGAAGG...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCATTTAGTTCCCGGGTCTaGTCATTCTGCGCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASFSSRV*SFCASS
Trigger: GGAGGAGGCGCAGAATGAGCAGACCCGGGAACTAAA...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GTGCTGGGATTAAAGGTGTGCACCACCGAACTCAGTTCAAACCCAACTGTAAGAAACAGAGGTCATGGATaGATGAGCTGTGGAGGGTGG +
Preference number: 4 (lower is better)
Translates to: VLGLKVCTTELSSNPTVRNRGHG*MSCGGW
Trigger: CCACCCTCCACAGCTCATGCATCCATGACCTCTGTT...TCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR GCA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTAACAGAGGTCATGGATaGATGAGCTGTGGAGGGTGG +
Preference number: 4 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLNRGHG*MSCGGW
Trigger: CCACCCTCCACAGCTCATGCATCCATGACCTCTGTT...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTCCCACTGCTCGGGCTTaGTTCCCCAGGTTCATCACA +
Preference number: 4 (lower is better)
Translates to: QRKVRKDQATQVVKNGLIPTARA*FPRFIT
Trigger: TGTGATGAACCTGGGGAACCAAGCCCGAGCAGTGGG...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGAGTAGCTGTGAGAAGCTaGACCCAGTGTGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: DGLFSKGASWRREGTEERVAVRS*TQCGHH
Trigger: ATGGTGGCCACACTGGGTCCAGCTTCTCACAGCTAC...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGCCCTTCTTCTCCAGCTaGGCCTTCAAGCGAGCGATC +
Preference number: 4 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRPFFSS*AFKRAI
Trigger: GATCGCTCGCTTGAAGGCCCAGCTGGAGAAGAAGGG...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGAAGCTGCCTCCAAGATaGGCTGGGGTGGGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRKLPPR*AGVGGD
Trigger: ATCACCACCCACCCCAGCCCATCTTGGAGGCAGCTT...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTATGTACTCTTCGTGTTaGTCCTGGATCTCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: RARKHPRLLTITHKKMETMYSSC*SWISAF
Trigger: GAAGGCCGAGATCCAGGACCAACACGAAGAGTACAT...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CCTGTAACAACAGCTCCAGGGGGTCCATGCCTCTGGCCTTTGCATTCATGTATGGGACGCTTCTTCATTTaGCTGTTATTCACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PVTTAPGGPCLWPLHSCMGRFFI*LLFTPA
Trigger: AGCTGGAGTGAATAACAGCCAAATGAAGAAGCGTCC...CATACATGAATGCAAAGGCCAGAGGCATGGACCCCCTGGAGCTGTTGTTACAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCGGACGCTTCTTCATTTaGCTGTTATTCACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: ERWPDGLFSKGASWRREGGRFFI*LLFTPA
Trigger: AGCTGGAGTGAATAACAGCCAAATGAAGAAGCGTCC...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GTGCTGGGATTAAAGGTGTGCACCACCGAACTCAGTTCAAACCCAACTGTAAGAGCCCACCGCAGAAGTTaGACGCTTCTTCATTTGGCT +
Preference number: 4 (lower is better)
Translates to: VLGLKVCTTELSSNPTVRAHRRS*TLLHLA
Trigger: AGCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGC...TCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAGCTCTGTATCTGGGATaGGACCCCATTGCCATGGCA +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSALYLG*DPIAMA
Trigger: TGCCATGGCAATGGGGTCCCATCCCAGATACAGAGC...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTAAGGAACAGAGGTCATaGATGCATGAGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: RARKHPRLLTITHKKMETKEQRS*MHELWR
Trigger: CCTCCACAGCTCATGCATCCATGACCTCTGTTCCTT...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAACACAGCATCAAAAGTaGAGGTCTTGGGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSTQHQK*RSWAAP
Trigger: GGGAGCTGCCCAAGACCTTCACTTTTGATGCTGTGT...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTCCTGTTCCAGAGAATTGCCTACTCGGATATaGTCCTGGCCATCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: SMPSSHQEISTHSSCSRELPTRI*SWPSEP
Trigger: TGGCTCTGATGGCCAGGATCATATCCGAGTAGGCAA...TTCTCTGGAACAGGAGCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR TCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTTGTTGCTCGTTGGTGTaGTCCATGATGTTCCGCCCC +
Preference number: 4 (lower is better)
Translates to: QRKVRKDQATQVVKNGLICCSLV*SMMFRP
Trigger: GGGGCGGAACATCATGGATCACACCAACGAGCAACA...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGGGAAAAGGCGGTTCATaGTCTTGTTCTTCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: KHPRLLTITHKKMETVDLGKGGS*SCSSPQ
Trigger: CTGAGGAGAAGAACAAGATCATGAACCGCCTTTTCC...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp TCCCAGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGATCTTGCTCTTGGTCATaGGAAAACTCCATCTCAAAG +
Preference number: 4 (lower is better)
Translates to: SQSQKASTAAHHHTQEDGSCSWS*ENSISK
Trigger: CTTTGAGATGGAGTTTTCTCATGACCAAGAGCAAGA...TCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GGTAGTGGACCAGACAATGTGGAGTCAGTGTGTCCAAGTGATGAATGGGGTGACATGTGGGTGAAGATGTaGTCAAAGGCATTCGGGATA +
Preference number: 4 (lower is better)
Translates to: GSGPDNVESVCPSDEWGDMWVKM*SKAFGI
Trigger: TATCCCGAATGCCTTTGAGCACATCTTCACCCACAT...GTCACCCCATTCATCACTTGGACACACTGACTCCACATTGTCTGGTCCACTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGTCAGCTCTAGCCTCTTaGCTGGCTCCTTGGATAGCA +
Preference number: 4 (lower is better)
Translates to: TYHLQYLETFGVVTKEGESALAS*LAPWIA
Trigger: TGCTATCCAAGGAGCCAGGCAAGAGGCTAGAGCTGA...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCATCAGCTCTAGCCTCTTaGCTGGCTCCTTGGATAGCA +
Preference number: 4 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASSALAS*LAPWIA
Trigger: TGCTATCCAAGGAGCCAGGCAAGAGGCTAGAGCTGA...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTAGCAGCATCTCCTGCTaGATTTCCCGTTCACGGCGT +
Preference number: 4 (lower is better)
Translates to: QRKVRKDQATQVVKNGLISSISC*ISRSRR
Trigger: ACGCCGTGAACGGGAAATGCAGCAGGAGATGCTGCT...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GAAAGCCATTCCTCTGATTTGAATCCTGAGTGTCAATCACAGGGTTCTGACAGATTTAGTTCCCGGGTCTaGTCATTCTGCGCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: ESHSSDLNPECQSQGSDRFSSRV*SFCASS
Trigger: GGAGGAGGCGCAGAATGAGCAGACCCGGGAACTAAA...TCTGTCAGAACCCTGTGATTGACACTCAGGATTCAAATCAGAGGAATGGCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR GCA 90 bp GTGCTGGGATTAAAGGTGTGCACCACCGAACTCAGTTCAAACCCAACTGTAAGAACCACTGTTGCAGGGTaGAAAGGAACAGAGGTCATG +
Preference number: 4 (lower is better)
Translates to: VLGLKVCTTELSSNPTVRTTVAG*KGTEVM
Trigger: CATGACCTCTGTTCCTTTGCACCCTGCAACAGTGGT...TCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CCA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAACCAGTTTCACGTCCATaGTCAGAATCTGCTCATGAC +
Preference number: 4 (lower is better)
Translates to: WPDGLFSKGASWRREGTEPVSRP*SESAHD
Trigger: GTCATGAGCAGATTCTGACCATGGACGTGAAACTGG...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GGCAGCACCAAGTTAAGGTGCATTTCCACTCAACAGAAAGGCCTCCATCCTAAATACCACGTAGCTCCATaGTTTCTTCATCGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: GSTKLRCISTQQKGLHPKYHVAP*FLHRGA
Trigger: TGCTCCGCGATGAAGAAACCATGGAGCTACGTGGTA...TTTAGGATGGAGGCCTTTCTGTTGAGTGGAAATGCACCTTAACTTGGTGCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CCA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTTACCACGTAGCTCCATaGTTTCTTCATCGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLYHVAP*FLHRGA
Trigger: TGCTCCGCGATGAAGAAACCATGGAGCTACGTGGTA...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCAGTTATTCACTCCAGCTaGCACCAGTGGCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASVIHSS*HQWLEP
Trigger: AGGTTCCAGCCACTGGTGCCAGCTGGAGTGAATAAC...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCAGCCCACCGCAGAAGTTaGACGCTTCTTCATTTGGCT +
Preference number: 4 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASAHRRS*TLLHLA
Trigger: AGCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGC...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GTCCCTCTGGAACAGCAGCAAGTACTATTAACCACTGAACCTTCTCTCCAGCTTTTTCAGCTCTGTATCTaGGATGGGACCCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: VPLEQQQVLLTTEPSLQLFQLCI*DGTPLP
Trigger: TGGCAATGGGGTCCCATCCCAGATACAGAGCTGAAA...AAGCTGGAGAGAAGGTTCAGTGGTTAATAGTACTTGCTGCTGTTCCAGAGGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR GCA 90 bp GGTTTGTTTCTTGTCTTAGCTGGAGGCACAAAGCAAAGGATTTTGTTATCTGCAGGGATGGGACCCCATTaGCATGGCAACCCGAGCATA +
Preference number: 4 (lower is better)
Translates to: GLFLVLAGGTKQRILLSAGMGPH*HGNPSI
Trigger: TATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCC...TGCAGATAACAAAATCCTTTGCTTTGTGCCTCCAGCTAAGACAAGAAACAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGCGAGCGATCTCTTCCTaGAATTCCCTCAGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRRAISS*NSLSSV
Trigger: CACACTGCTGAGGGAATTCCAGGAAGAGATCGCTCG...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAATGTACTCTTCGTGTTaGTCCTGGATCTCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSMYSSC*SWISAF
Trigger: GAAGGCCGAGATCCAGGACCAACACGAAGAGTACAT...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTGTTATTCACTCCAGCTaGCACCAGTGGCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: QRKVRKDQATQVVKNGLIVIHSS*HQWLEP
Trigger: AGGTTCCAGCCACTGGTGCCAGCTGGAGTGAATAAC...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCACTCAAAGATAGCCGGTaGGGACACATCCAGTTCCAA +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSLKDSR*GHIQFQ
Trigger: TTGGAACTGGATGTGTCCCCACCGGCTATCTTTGAG...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGACTCAAAGATAGCCGGTaGGGACACATCCAGTTCCAA +
Preference number: 4 (lower is better)
Translates to: DGLFSKGASWRREGTEERLKDSR*GHIQFQ
Trigger: TTGGAACTGGATGTGTCCCCACCGGCTATCTTTGAG...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGGGAAAAGGCGGTTCATaGTCTTGTTCTTCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEGKGGS*SCSSPQ
Trigger: CTGAGGAGAAGAACAAGATCATGAACCGCCTTTTCC...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTTCTTGCTCTTGGTCATaGGAAAACTCCATCTCAAAG +
Preference number: 4 (lower is better)
Translates to: RARKHPRLLTITHKKMETSCSWS*ENSISK
Trigger: CTTTGAGATGGAGTTTTCTCATGACCAAGAGCAAGA...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp GGTTTGTTTCTTGTCTTAGCTGGAGGCACAAAGCAAAGGATTTTGTTATCTGCATTTAGTTCCCGGGTCTaGTCATTCTGCGCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GLFLVLAGGTKQRILLSAFSSRV*SFCASS
Trigger: GGAGGAGGCGCAGAATGAGCAGACCCGGGAACTAAA...TGCAGATAACAAAATCCTTTGCTTTGTGCCTCCAGCTAAGACAAGAAACAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGTTTCAGCTCTGTATCTaGGATGGGACCCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRFQLCI*DGTPLP
Trigger: TGGCAATGGGGTCCCATCCCAGATACAGAGCTGAAA...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR GCA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCATCTTCTAGAAGCTTCTaGTTCTCCTCACTCACAAGG +
Preference number: 4 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSSSRSF*FSSLTR
Trigger: CCTTGTGAGTGAGGAGAAGCAGAAGCTTCTAGAAGA...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GGTTTGTTTCTTGTCTTAGCTGGAGGCACAAAGCAAAGGATTTTGTTATCTGCAAAGGAACAGAGGTCATaGATGCATGAGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: GLFLVLAGGTKQRILLSAKEQRS*MHELWR
Trigger: CCTCCACAGCTCATGCATCCATGACCTCTGTTCCTT...TGCAGATAACAAAATCCTTTGCTTTGTGCCTCCAGCTAAGACAAGAAACAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR TCA 90 bp CAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGAATGGATTGATTTCTTGCTCTTGGTCATaGGAAAACTCCATCTCAAAG +
Preference number: 4 (lower is better)
Translates to: QRKVRKDQATQVVKNGLISCSWS*ENSISK
Trigger: CTTTGAGATGGAGTTTTCTCATGACCAAGAGCAAGA...AATCAATCCATTCTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CCA 90 bp GGTTTGTTTCTTGTCTTAGCTGGAGGCACAAAGCAAAGGATTTTGTTATCTGCAGTAGCTTGCTTTCCATaGCCTTGTACTTGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: GLFLVLAGGTKQRILLSAVACFP*PCTWLQ
Trigger: TTGCAGCCAAGTACAAGGCCATGGAAAGCAAGCTAC...TGCAGATAACAAAATCCTTTGCTTTGTGCCTCCAGCTAAGACAAGAAACAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp TCCACTCCCACCACCAGCTGTTGGCTGTGTGGCTGGCCCTCCAGCTaGGTTGGGACCAGCCTTGTTCTGTCTCTCACTGCCGGCCAGGTC +
Preference number: 5 (lower is better)
Translates to: STPTTSCWLCGWPSS*VGTSLVLSLTAGQV
Trigger: GACCTGGCCGGCAGTGAGAGACAGAACAAGGCTGGTCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGGAGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 90 bp GGCAGAACCACTAGCGCTGCCACTTCCACTCCCACCACCAGCTGTTaGCTGTGTGGCTGGCCCTCCAGCTGCGTTGGGACCAGCCTTGTT +
Preference number: 5 (lower is better)
Translates to: GRTTSAATSTPTTSC*LCGWPSSCVGTSLV
Trigger: AACAAGGCTGGTCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGGAGTGGAAGTGGCAGCGCTAGTGGTTCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 90 bp TTCGGCCACCCAGGCCTCAATCACGGACCCCTCTGGATAGCCGGCTaGGGCAGACACGGCCTTCTTTCTACGACTGCTCTTTCTCCGAGG +
Preference number: 5 (lower is better)
Translates to: FGHPGLNHGPLWIAG*GRHGLLSTTALSPR
Trigger: CCTCGGAGAAAGAGCAGTCGTAGAAAGAAGGCCGTGTCTGCCCCAGCCGGCTATCCAGAGGGGTCCGTGATTGAGGCCTGGGTGGCCGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp CCTCTGGATAGCCGGCTGGGGCAGACACGGCCTTCTTTCTACGACTaGTCTTTCTCCGAGGTCGCTTGCCCAGCATCCCCTTCTTCTCCA +
Preference number: 5 (lower is better)
Translates to: PLDSRLGQTRPSFYD*SFSEVACPASPSSP
Trigger: TGGAGAAGAAGGGGATGCTGGGCAAGCGACCTCGGAGAAAGAGCAGTCGTAGAAAGAAGGCCGTGTCTGCCCCAGCCGGCTATCCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 90 bp ATCATCTTCCTCTTCGGCCACCCAGGCCTCAATCACGGACCCCTCTaGATAGCCGGCTGGGGCAGACACGGCCTTCTTTCTACGACTGCT +
Preference number: 5 (lower is better)
Translates to: IIFLFGHPGLNHGPL*IAGWGRHGLLSTTA
Trigger: AGCAGTCGTAGAAAGAAGGCCGTGTCTGCCCCAGCCGGCTATCCAGAGGGGTCCGTGATTGAGGCCTGGGTGGCCGAAGAGGAAGATGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp CAGACACGGCCTTCTTTCTACGACTGCTCTTTCTCCGAGGTCGCTTaGCCAGCATCCCCTTCTTCTCCAGCTGGGCCTTCAAGCGAGCGA +
Preference number: 5 (lower is better)
Translates to: QTRPSFYDCSFSEVA*PASPSSPAGPSSER
Trigger: TCGCTCGCTTGAAGGCCCAGCTGGAGAAGAAGGGGATGCTGGGCAAGCGACCTCGGAGAAAGAGCAGTCGTAGAAAGAAGGCCGTGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 90 bp CTGTTGCAGGGTGCAAAGGAACAGAGGTCATGGATGCATGAGCTGTaGAGGGTGGAGGCATCCGCTGAGGACTCTGGCACCAGGATCTCG +
Preference number: 5 (lower is better)
Translates to: LLQGAKEQRSWMHEL*RVEASAEDSGTRIS
Trigger: CGAGATCCTGGTGCCAGAGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCATGCATCCATGACCTCTGTTCCTTTGCACCCTGCAACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGAGCCCACTGCTCGGGCTaGGTTCCCCAGGTTCATCAC +
Preference number: 5 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGAHCSG*VPQVHH
Trigger: GTGATGAACCTGGGGAACCAAGCCCGAGCAGTGGGC...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTTTTCTCCGAGGTCGCTaGCCCAGCATCCCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RALVLSAVDRDLTASGNSFLRGR*PSIPFF
Trigger: GAAGAAGGGGATGCTGGGCAAGCGACCTCGGAGAAA...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS TCA 90 bp GACCAGCCTTGTTCTGTCTCTCACTGCCGGCCAGGTCTACCAGGTTaGGCTTGCCTACTCGGATATGATCCTGGCCATCAGAGCCACGCT +
Preference number: 5 (lower is better)
Translates to: DQPCSVSHCRPGLPG*ACLLGYDPGHQSHA
Trigger: AGCGTGGCTCTGATGGCCAGGATCATATCCGAGTAGGCAAGCTCAACCTGGTAGACCTGGCCGGCAGTGAGAGACAGAACAAGGCTGGTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 90 bp AGGGTGCAAAGGAACAGAGGTCATGGATGCATGAGCTGTGGAGGGTaGAGGCATCCGCTGAGGACTCTGGCACCAGGATCTCGACTTTCG +
Preference number: 5 (lower is better)
Translates to: RVQRNRGHGCMSCGG*RHPLRTLAPGSRLS
Trigger: CGAAAGTCGAGATCCTGGTGCCAGAGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCATGCATCCATGACCTCTGTTCCTTTGCACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CGGCAGGCCACTGGTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCCATGGTCTACCACTGTaGCAGGGTGCAAAGGAACAG +
Preference number: 5 (lower is better)
Translates to: RQATGSPHCSISCRSHGGHGLPL*QGAKEQ
Trigger: CTGTTCCTTTGCACCCTGCAACAGTGGTAGACCATG...GCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAACCAGTGGCCTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS TCA 90 bp TCACTGCCGGCCAGGTCTACCAGGTTGAGCTTGCCTACTCGGATATaGTCCTGGCCATCAGAGCCACGCTCACTGCACTCCACTGTGATA +
Preference number: 5 (lower is better)
Translates to: SLPARSTRLSLPTRI*SWPSEPRSLHSTVI
Trigger: TATCACAGTGGAGTGCAGTGAGCGTGGCTCTGATGGCCAGGATCATATCCGAGTAGGCAAGCTCAACCTGGTAGACCTGGCCGGCAGTGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp CCACGTAGCTCCATGGTTTCTTCATCGCGGAGCAGCATCTCCTGCTaGATTTCCCGTTCACGGCGTTTCTGTTCCGCAATCTCCTGTCGC +
Preference number: 5 (lower is better)
Translates to: PRSSMVSSSRSSISC*ISRSRRFCSAISCR
Trigger: GCGACAGGAGATTGCGGAACAGAAACGCCGTGAACGGGAAATGCAGCAGGAGATGCTGCTCCGCGATGAAGAAACCATGGAGCTACGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCTCAAAAGTGAAGGTCTaGGGCAGCTCCCCGGGTGCC +
Preference number: 5 (lower is better)
Translates to: ERWPDGLFSKGASWRREGSKVKV*GSSPGA
Trigger: GGCACCCGGGGAGCTGCCCAAGACCTTCACTTTTGA...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGCTCAGCAGTGTGTCCTaGGGGTCCTCGTTCACCCGC +
Preference number: 5 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWLSSVS*GSSFTR
Trigger: GCGGGTGAACGAGGACCCCAAGGACACACTGCTGAG...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGGGCTCTGGTTCTCTCCGCTGTGGACCGAGACCTGACAGCTTCAGGGAACAGTTCCATGGCCTTGTACTaGGCTGCAAGCAGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: RALVLSAVDRDLTASGNSSMALY*AASSSV
Trigger: TACAGAGCTGCTTGCAGCCAAGTACAAGGCCATGGA...ACTGTTCCCTGAAGCTGTCAGGTCTCGGTCCACAGCGGAGAGAACCAGAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp TCAATGATGAGGTACTTGAGCTTTAGTTCCCGGGTCTGCTCATTCTaGGCCTCCTCCAGGTCCTGCCGCACGCGGATGTACTCTTCGTGT +
Preference number: 5 (lower is better)
Translates to: SMMRYLSFSSRVCSF*ASSRSCRTRMYSSC
Trigger: ACACGAAGAGTACATCCGCGTGCGGCAGGACCTGGAGGAGGCGCAGAATGAGCAGACCCGGGAACTAAAGCTCAAGTACCTCATCATTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CCA 90 bp TCAGAGCCACGCTCACTGCACTCCACTGTGATAACAAAGATGGCATaGGACCGAGAGCTGACCTCATTCATGTGGGTGCTGCCCACTGCT +
Preference number: 5 (lower is better)
Translates to: SEPRSLHSTVITKMA*DRELTSFMWVLPTA
Trigger: AGCAGTGGGCAGCACCCACATGAATGAGGTCAGCTCTCGGTCCCATGCCATCTTTGTTATCACAGTGGAGTGCAGTGAGCGTGGCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 90 bp CTTCCACCTCCTGCTGCAGGGATGAGTAGGTACCACGTAGCTCCATaGTTTCTTCATCGCGGAGCAGCATCTCCTGCTGCATTTCCCGTT +
Preference number: 5 (lower is better)
Translates to: LPPPAAGMSRYHVAP*FLHRGAASPAAFPV
Trigger: AACGGGAAATGCAGCAGGAGATGCTGCTCCGCGATGAAGAAACCATGGAGCTACGTGGTACCTACTCATCCCTGCAGCAGGAGGTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACTACAGGTCGGCCTGCTaGGAGCTAGCATCATACACA +
Preference number: 5 (lower is better)
Translates to: STGSASPTPLGHLSPSEDYRSAC*ELASYT
Trigger: TGTGTATGATGCTAGCTCCAAGCAGGCCGACCTGTA...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCCTCTTGCCTGGCTCCTaGGATAGCAGGTCTCGGATC +
Preference number: 5 (lower is better)
Translates to: ERWPDGLFSKGASWRREGLLPGS*DSRSRI
Trigger: GATCCGAGACCTGCTATCCAAGGAGCCAGGCAAGAG...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACTTGCTTTCCATGGCCTaGTACTTGGCTGCAAGCAGC +
Preference number: 5 (lower is better)
Translates to: STGSASPTPLGHLSPSEDLLSMA*YLAASS
Trigger: GCTGCTTGCAGCCAAGTACAAGGCCATGGAAAGCAA...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp CTTTCCATGGCCTTGTACTTGGCTGCAAGCAGCTCTGTAGCCTGCTaGTCCCGCCGTAGATCCTCCAGCATCTTCTCCTTCTCTTCTAGA +
Preference number: 5 (lower is better)
Translates to: LSMALYLAASSSVAC*SRRRSSSIFSFSSR
Trigger: TCTAGAAGAGAAGGAGAAGATGCTGGAGGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGCCATGGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp TTGCTTTCCATGGCCTTGTACTTGGCTGCAAGCAGCTCTGTAGCCTaGTGCTCCCGCCGTAGATCCTCCAGCATCTTCTCCTTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: LLSMALYLAASSSVA*CSRRRSSSIFSFSS
Trigger: AGAAGAGAAGGAGAAGATGCTGGAGGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGCCATGGAAAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 90 bp TGGCTGTTATTCACTCCAGCTGGCACCAGTGGCTGGAACCTCCACTaGTCCTCCTCACAGTCCAGGAAAAGGCGGTTCATGATCTTGTTC +
Preference number: 5 (lower is better)
Translates to: WLLFTPAGTSGWNLH*SSSQSRKRRFMILF
Trigger: GAACAAGATCATGAACCGCCTTTTCCTGGACTGTGAGGAGGAGCAGTGGAGGTTCCAGCCACTGGTGCCAGCTGGAGTGAATAACAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGCCCACTGCTCGGGCTaGGTTCCCCAGGTTCATCAC +
Preference number: 5 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLAHCSG*VPQVHH
Trigger: GTGATGAACCTGGGGAACCAAGCCCGAGCAGTGGGC...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCAGCCCACCGCAGAAGTaGGACGCTTCTTCATTTGGC +
Preference number: 5 (lower is better)
Translates to: ERWPDGLFSKGASWRREGSPPQK*DASSFG
Trigger: GCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGCT...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGTGGGATGGGACCCCATaGCCATGGCAACCCGAGCAT +
Preference number: 5 (lower is better)
Translates to: KHPRLLTITHKKMETVDLWDGTP*PWQPEH
Trigger: ATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCCA...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGAGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTTGGGATGGGACCCCATaGCCATGGCAACCCGAGCAT +
Preference number: 5 (lower is better)
Translates to: RARKHPRLLTITHKKMETWDGTP*PWQPEH
Trigger: ATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCCA...AGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCCACCGGGAGTGCAAGCCCAACACCATTAGGACACCTCTCACCTTCAGAGGACCCGTGGGTCTTGCTCTaGGTCATGAGAAAACTCCAT +
Preference number: 5 (lower is better)
Translates to: STGSASPTPLGHLSPSEDPWVLL*VMRKLH
Trigger: ATGGAGTTTTCTCATGACCAAGAGCAAGACCCACGG...GTCCTCTGAAGGTGAGAGGTGTCCTAATGGTGTTGGGCTTGCACTCCCGGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGACATGGTCTACCACTGTaGCAGGGTGCAAAGGAACAG +
Preference number: 5 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGHGLPL*QGAKEQ
Trigger: CTGTTCCTTTGCACCCTGCAACAGTGGTAGACCATG...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CCA 90 bp CCGAGCATACTGGCTGATAGGTCTCTTGTAGCCCACCGCAGAAGTTaGACGCTTCTTCATTTGGCTGTTATTCACTCCAGCTGGCACCAG +
Preference number: 5 (lower is better)
Translates to: PSILADRSLVAHRRS*TLLHLAVIHSSWHQ
Trigger: CTGGTGCCAGCTGGAGTGAATAACAGCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGCTACAAGAGACCTATCAGCCAGTATGCTCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCAGGGGGAGGTCCCTCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTACAGGTCGGCCTGCTaGGAGCTAGCATCATACACA +
Preference number: 5 (lower is better)
Translates to: SGGGPSMPSSHQEISTHSYRSAC*ELASYT
Trigger: TGTGTATGATGCTAGCTCCAAGCAGGCCGACCTGTA...GCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGAGGGACCTCCCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp TTGGGGTGGTCACAAAGGAAGGTGAGGAAGGACCAAGCCACACAAGTGGTAAAGTTCAGCTCTAGCCTCTaGCCTGGCTCCTTGGATAGC +
Preference number: 5 (lower is better)
Translates to: LGWSQRKVRKDQATQVVKFSSSL*PGSLDS
Trigger: GCTATCCAAGGAGCCAGGCAAGAGGCTAGAGCTGAA...CTTTACCACTTGTGTGGCTTGGTCCTTCCTCACCTTCCTTTGTGACCACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGATCTGTCAGCTTCATGTCTTACATAAGTAACAGACCTGCTCCTAAGCCAGGGGGCCCTCCAGCTGCGTaGGGACCAGCCTTGTTCTGT +
Preference number: 5 (lower is better)
Translates to: RSVSFMSYISNRPAPKPGGPPAA*GPALFC
Trigger: ACAGAACAAGGCTGGTCCCAACGCAGCTGGAGGGCC...CCCTGGCTTAGGAGCAGGTCTGTTACTTATGTAAGACATGAAGCTGACAGATCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGGGCCCTCCAGCTGCGTaGGGACCAGCCTTGTTCTGT +
Preference number: 5 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEGPPAA*GPALFC
Trigger: ACAGAACAAGGCTGGTCCCAACGCAGCTGGAGGGCC...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAATGTGGGTGCTCCTGTaGCCAGCCAGAGCAGCAATC +
Preference number: 5 (lower is better)
Translates to: WPDGLFSKGASWRREGTEMWVLL*PARAAI
Trigger: GATTGCTGCTCTGGCTGGCAACAGGAGCACCCACAT...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GACCATGGCAGGACCAGGCATCTCAAGCAGGGGGATCTCTTCTCACTAACCAAGTCGTTCACCCGCGGTTaGTTCTTGATGTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: DHGRTRHLKQGDLFSLTKSFTRG*FLMFLA
Trigger: AGCCAAGAACATCAAGAACAAACCGCGGGTGAACGA...CTTGGTTAGTGAGAAGAGATCCCCCTGCTTGAGATGCCTGGTCCTGCCATGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CTAAGTCTCTCCCTAGCCAAGAGAACAGGAGGCTGTGCTGTGACCATGGCAGGATCGTTCACCCGCGGTTaGTTCTTGATGTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: LSLSLAKRTGGCAVTMAGSFTRG*FLMFLA
Trigger: AGCCAAGAACATCAAGAACAAACCGCGGGTGAACGA...TCCTGCCATGGTCACAGCACAGCCTCCTGTTCTCTTGGCTAGGGAGAGACTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCACTCAGCAGTGTGTCCTaGGGGTCCTCGTTCACCCGC +
Preference number: 5 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSLSSVS*GSSFTR
Trigger: GCGGGTGAACGAGGACCCCAAGGACACACTGCTGAG...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CCTGTAACAACAGCTCCAGGGGGTCCATGCCTCTGGCCTTTGCATTCATGTATGGATGTACTCTTCGTGTaGGTCCTGGATCTCGGCCTT +
Preference number: 5 (lower is better)
Translates to: PVTTAPGGPCLWPLHSCMDVLFV*VLDLGL
Trigger: AAGGCCGAGATCCAGGACCAACACGAAGAGTACATC...CATACATGAATGCAAAGGCCAGAGGCATGGACCCCCTGGAGCTGTTGTTACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CAA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGTCAAAAGTGAAGGTCTaGGGCAGCTCCCCGGGTGCC +
Preference number: 5 (lower is better)
Translates to: TYHLQYLETFGVVTKEGESKVKV*GSSPGA
Trigger: GGCACCCGGGGAGCTGCCCAAGACCTTCACTTTTGA...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGTTCAGCTCTAGCCTCTaGCCTGGCTCCTTGGATAGC +
Preference number: 5 (lower is better)
Translates to: KHPRLLTITHKKMETVDLFSSSL*PGSLDS
Trigger: GCTATCCAAGGAGCCAGGCAAGAGGCTAGAGCTGAA...CAAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCAGGGGGAGGTCCCTCAATGCCCAGTTCACATCAGGAGATTTCTACACACAGCTTGTTCTTGATGTTCTaGGCTCGGTTGGCAAAGCGC +
Preference number: 5 (lower is better)
Translates to: SGGGPSMPSSHQEISTHSLFLMF*ARLAKR
Trigger: GCGCTTTGCCAACCGAGCCAAGAACATCAAGAACAA...GCTGTGTGTAGAAATCTCCTGATGTGAACTGGGCATTGAGGGACCTCCCCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp GCACTCACGTCAGGTGACTCACAACCACCTGTAACAACAGCTCCAGGGGGTCCATTCCAACATCTTCTGTaGCTCGTTGGTGTGATCCAT +
Preference number: 5 (lower is better)
Translates to: ALTSGDSQPPVTTAPGGPFQHLL*LVGVIH
Trigger: ATGGATCACACCAACGAGCAACAGAAGATGTTGGAA...TGGACCCCCTGGAGCTGTTGTTACAGGTGGTTGTGAGTCACCTGACGTGAGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CAA 90 bp CCTGTAACAACAGCTCCAGGGGGTCCATGCCTCTGGCCTTTGCATTCATGTATGCCGTGGGTCTTGCTCTaGGTCATGAGAAAACTCCAT +
Preference number: 5 (lower is better)
Translates to: PVTTAPGGPCLWPLHSCMPWVLL*VMRKLH
Trigger: ATGGAGTTTTCTCATGACCAAGAGCAAGACCCACGG...CATACATGAATGCAAAGGCCAGAGGCATGGACCCCCTGGAGCTGTTGTTACAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS-3UTR CAA 90 bp GAGAGGTGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCCCGTGGGTCTTGCTCTaGGTCATGAGAAAACTCCAT +
Preference number: 5 (lower is better)
Translates to: ERWPDGLFSKGASWRREGPWVLL*VMRKLH
Trigger: ATGGAGTTTTCTCATGACCAAGAGCAAGACCCACGG...GCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCACCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TGCTATGGAGTCAAGGGAGACTTTGAACTCCTGATCCATCTGCCTCTGTCTCCCCATGGTCTACCACTGTaGCAGGGTGCAAAGGAACAG +
Preference number: 5 (lower is better)
Translates to: CYGVKGDFELLIHLPLSPHGLPL*QGAKEQ
Trigger: CTGTTCCTTTGCACCCTGCAACAGTGGTAGACCATG...GGGAGACAGAGGCAGATGGATCAGGAGTTCAAAGTCTCCCTTGACTCCATAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
CDS TCA 90 bp ATGAGCCTCTCCATGTGTAGTACCCGTGGGTCTTGCTCTTGGTCATaGGAAAACTCCATCTCAAAGATAGCCGGTGGGGACACATCCAGT +
Preference number: 5 (lower is better)
Translates to: MSLSMCSTRGSCSWS*ENSISKIAGGDTSS
Trigger: ACTGGATGTGTCCCCACCGGCTATCTTTGAGATGGAGTTTTCTCATGACCAAGAGCAAGACCCACGGGTACTACACATGGAGAGGCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAATGTGGGTGCTCCTGTaGCCAGCCAGAGCAGCAATC +
Preference number: 5 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSMWVLL*PARAAI
Trigger: GATTGCTGCTCTGGCTGGCAACAGGAGCACCCACAT...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGATCTGTCAGCTTCATGTCTTACATAAGTAACAGACCTGCTCCTAAGCCAGGGTTTCTCCGAGGTCGCTaGCCCAGCATCCCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RSVSFMSYISNRPAPKPGFLRGR*PSIPFF
Trigger: GAAGAAGGGGATGCTGGGCAAGCGACCTCGGAGAAA...CCCTGGCTTAGGAGCAGGTCTGTTACTTATGTAAGACATGAAGCTGACAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp AGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTTTGCTTTCCATGGCCTaGTACTTGGCTGCAAGCAGC +
Preference number: 5 (lower is better)
Translates to: SQKASTAAHHHTQEDGNCLLSMA*YLAASS
Trigger: GCTGCTTGCAGCCAAGTACAAGGCCATGGAAAGCAA...ACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTCCCCCAATGAGTAGCTaGCTTTCCATGGCCTTGTAC +
Preference number: 5 (lower is better)
Translates to: SQKASTAAHHHTQEDGNCPPMSS*LSMALY
Trigger: GTACAAGGCCATGGAAAGCAAGCTACTCATTGGGGG...ACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGATGTACTCTTCGTGTaGGTCCTGGATCTCGGCCTT +
Preference number: 5 (lower is better)
Translates to: WPDGLFSKGASWRREGTEDVLFV*VLDLGL
Trigger: AAGGCCGAGATCCAGGACCAACACGAAGAGTACATC...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GAAAGCCATTCCTCTGATTTGAATCCTGAGTGTCAATCACAGGGTTCTGACAGATGGGATGGGACCCCATaGCCATGGCAACCCGAGCAT +
Preference number: 5 (lower is better)
Translates to: ESHSSDLNPECQSQGSDRWDGTP*PWQPEH
Trigger: ATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCCA...TCTGTCAGAACCCTGTGATTGACACTCAGGATTCAAATCAGAGGAATGGCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp GTGCTGGGATTAAAGGTGTGCACCACCGAACTCAGTTCAAACCCAACTGTAAGACCCCCAATGAGTAGCTaGCTTTCCATGGCCTTGTAC +
Preference number: 5 (lower is better)
Translates to: VLGLKVCTTELSSNPTVRPPMSS*LSMALY
Trigger: GTACAAGGCCATGGAAAGCAAGCTACTCATTGGGGG...TCTTACAGTTGGGTTTGAACTGAGTTCGGTGGTGCACACCTTTAATCCCAGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTGATGTACTCTTCGTGTaGGTCCTGGATCTCGGCCTT +
Preference number: 5 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLDVLFV*VLDLGL
Trigger: AAGGCCGAGATCCAGGACCAACACGAAGAGTACATC...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp CATCACCTGATAGTTTCTTGCCCCTTCACACACACTGGTACACACACTAGTTCAAGCCCACCGCAGAAGTaGGACGCTTCTTCATTTGGC +
Preference number: 5 (lower is better)
Translates to: HHLIVSCPFTHTGTHTSSSPPQK*DASSFG
Trigger: GCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGCT...TGAACTAGTGTGTGTACCAGTGTGTGTGAAGGGGCAAGAAACTATCAGGTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCAAGCCCACCGCAGAAGTaGGACGCTTCTTCATTTGGC +
Preference number: 5 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASSPPQK*DASSFG
Trigger: GCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGCT...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CCA 90 bp CCTGCAGGTAATTCTCCATGTTCTTCTCCAAAGCTGCCTCCAAGATaGGCTGGGGTGGGTGGTGATTGTTGTTGTTATCATCTTCCTCTT +
Preference number: 5 (lower is better)
Translates to: PAGNSPCSSPKLPPR*AGVGGDCCCYHLPL
Trigger: AAGAGGAAGATGATAACAACAACAATCACCACCCACCCCAGCCCATCTTGGAGGCAGCTTTGGAGAAGAACATGGAGAATTACCTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GGTAGTGGACCAGACAATGTGGAGTCAGTGTGTCCAAGTGATGAATGGGGTGACGCGGACAGCGAGAGATaGATTTTAGAAGCTTCCTTA +
Preference number: 5 (lower is better)
Translates to: GSGPDNVESVCPSDEWGDADSER*ILEASL
Trigger: TAAGGAAGCTTCTAAAATCAATCTCTCGCTGTCCGC...GTCACCCCATTCATCACTTGGACACACTGACTCCACATTGTCTGGTCCACTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020999.7
CDS-3UTR CAA 90 bp GATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAAGAAAGATCCATGGCCTTGTACTaGGCTGCAAGCAGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: DGLFSKGASWRREGTEERSMALY*AASSSV
Trigger: TACAGAGCTGCTTGCAGCCAAGTACAAGGCCATGGA...TCTTTCTTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TGGCCTGATGGTTTGTTCTCCAAAGGAGCTTCTTGGAGAAGAGAGGGCACTGAATTCCAACATCTTCTGTaGCTCGTTGGTGTGATCCAT +
Preference number: 5 (lower is better)
Translates to: WPDGLFSKGASWRREGTEFQHLL*LVGVIH
Trigger: ATGGATCACACCAACGAGCAACAGAAGATGTTGGAA...TTCAGTGCCCTCTCTTCTCCAAGAAGCTCCTTTGGAGAACAAACCATCAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp GTTCTCCACACTGCTCCATTTCCTGCAGGTCTCATGGTGGCAACAACTGTTTGGAGCTTCTTGAGTTTCTaGGTTTTAACTTCCACCTCC +
Preference number: 5 (lower is better)
Translates to: VLHTAPFPAGLMVATTVWSFLSF*VLTSTS
Trigger: GGAGGTGGAAGTTAAAACCAAGAAACTCAAGAAGCT...CCAAACAGTTGTTGCCACCATGAGACCTGCAGGAAATGGAGCAGTGTGGAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AAGGTAAATCTGGCAAAAATTGGGCCTGGGTTTGTTTCTTGTCTTAGCTGGAGGTTGTTCTTGATGTTCTaGGCTCGGTTGGCAAAGCGC +
Preference number: 5 (lower is better)
Translates to: KVNLAKIGPGFVSCLSWRLFLMF*ARLAKR
Trigger: GCGCTTTGCCAACCGAGCCAAGAACATCAAGAACAA...CCTCCAGCTAAGACAAGAAACAAACCCAGGCCCAATTTTTGCCAGATTTACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AGCCAGAAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTAGCTTCTTGAGTTTCTaGGTTTTAACTTCCACCTCC +
Preference number: 5 (lower is better)
Translates to: SQKASTAAHHHTQEDGNCSFLSF*VLTSTS
Trigger: GGAGGTGGAAGTTAAAACCAAGAAACTCAAGAAGCT...ACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTTCTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp TCACACACACATGCATACATACCACACACACAAACACACACGCACCAAGCATCAGCGGACAGCGAGAGATaGATTTTAGAAGCTTCCTTA +
Preference number: 5 (lower is better)
Translates to: SHTHAYIPHTQTHTHQASADSER*ILEASL
Trigger: TAAGGAAGCTTCTAAAATCAATCTCTCGCTGTCCGC...TGATGCTTGGTGCGTGTGTGTTTGTGTGTGTGGTATGTATGCATGTGTGTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp ACTTATCACTTGCAATACCTGGAGACATTTGGGGTGGTCACAAAGGAAGGTGAGTTCCAACATCTTCTGTaGCTCGTTGGTGTGATCCAT +
Preference number: 5 (lower is better)
Translates to: TYHLQYLETFGVVTKEGEFQHLL*LVGVIH
Trigger: ATGGATCACACCAACGAGCAACAGAAGATGTTGGAA...CTCACCTTCCTTTGTGACCACCCCAAATGTCTCCAGGTATTGCAAGTGATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS-3UTR CAA 90 bp AAAGCATCCACGGCTGCTCACCATCACACACAAGAAGATGGAAACTGTGGACTTAGCTTCTTGAGTTTCTaGGTTTTAACTTCCACCTCC +
Preference number: 5 (lower is better)
Translates to: KASTAAHHHTQEDGNCGLSFLSF*VLTSTS
Trigger: GGAGGTGGAAGTTAAAACCAAGAAACTCAAGAAGCT...AAGTCCACAGTTTCCATCTTCTTGTGTGTGATGGTGAGCAGCCGTGGATGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CCA 72 bp ACTAGCGCTGCCACTTCCACTCCCACCACCAGCTGTTaGCTGTGTGGCTGGCCCTCCAGCTGCGTTGGGACC +
Preference number: 6 (lower is better)
Translates to: TSAATSTPTTSC*LCGWPSSCVGT
Trigger: GGTCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGGAGTGGAAGTGGCAGCGCTAGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 72 bp GCTTGGAGTCCCGGTAGGGGATGTGGGTGCTCCTGTTaGCAGCCAGAGCAGCAATCACATTGCCCAGGGCGG +
Preference number: 6 (lower is better)
Translates to: AWSPGRGCGCSC*QPEQQSHCPGR
Trigger: CCGCCCTGGGCAATGTGATTGCTGCTCTGGCTGGCAACAGGAGCACCCACATCCCCTACCGGGACTCCAAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp CTCTTCGGCCACCCAGGCCTCAATCACGGACCCCTCTaGATAGCCGGCTGGGGCAGACACGGCCTTCTTTCT +
Preference number: 6 (lower is better)
Translates to: LFGHPGLNHGPL*IAGWGRHGLLS
Trigger: AGAAAGAAGGCCGTGTCTGCCCCAGCCGGCTATCCAGAGGGGTCCGTGATTGAGGCCTGGGTGGCCGAAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CAA 90 bp GCTGTTGGCTGTGTGGCTGGCCCTCCAGCTGCGTTGGGACCAGCCTaGTTCTGTCTCTCACTGCCGGCCAGGTCTACCAGGTTGAGCTTG +
Preference number: 6 (lower is better)
Translates to: AVGCVAGPPAALGPA*FCLSLPARSTRLSL
Trigger: CAAGCTCAACCTGGTAGACCTGGCCGGCAGTGAGAGACAGAACAAGGCTGGTCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 72 bp ACCACCAGCTGTTGGCTGTGTGGCTGGCCCTCCAGCTaGGTTGGGACCAGCCTTGTTCTGTCTCTCACTGCC +
Preference number: 6 (lower is better)
Translates to: TTSCWLCGWPSS*VGTSLVLSLTA
Trigger: GGCAGTGAGAGACAGAACAAGGCTGGTCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGCTGGTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 72 bp AGCCGGCTGGGGCAGACACGGCCTTCTTTCTACGACTaGTCTTTCTCCGAGGTCGCTTGCCCAGCATCCCCT +
Preference number: 6 (lower is better)
Translates to: SRLGQTRPSFYD*SFSEVACPASP
Trigger: AGGGGATGCTGGGCAAGCGACCTCGGAGAAAGAGCAGTCGTAGAAAGAAGGCCGTGTCTGCCCCAGCCGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp ACTTCCACTCCCACCACCAGCTGTTGGCTGTGTGGCTaGCCCTCCAGCTGCGTTGGGACCAGCCTTGTTCTG +
Preference number: 6 (lower is better)
Translates to: TSTPTTSCWLCG*PSSCVGTSLVL
Trigger: CAGAACAAGGCTGGTCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGGAGTGGAAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp CCAGGCCTCAATCACGGACCCCTCTGGATAGCCGGCTaGGGCAGACACGGCCTTCTTTCTACGACTGCTCTT +
Preference number: 6 (lower is better)
Translates to: PGLNHGPLWIAG*GRHGLLSTTAL
Trigger: AAGAGCAGTCGTAGAAAGAAGGCCGTGTCTGCCCCAGCCGGCTATCCAGAGGGGTCCGTGATTGAGGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp TCCAGGTCCTGCCGCACGCGGATGTACTCTTCGTGTTaGTCCTGGATCTCGGCCTTCACCGCCTGTAGCTTG +
Preference number: 6 (lower is better)
Translates to: SRSCRTRMYSSC*SWISAFTACSL
Trigger: CAAGCTACAGGCGGTGAAGGCCGAGATCCAGGACCAACACGAAGAGTACATCCGCGTGCGGCAGGACCTGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS GCA 72 bp AGGTACTTGAGCTTTAGTTCCCGGGTCTGCTCATTCTaGGCCTCCTCCAGGTCCTGCCGCACGCGGATGTAC +
Preference number: 6 (lower is better)
Translates to: RYLSFSSRVCSF*ASSRSCRTRMY
Trigger: GTACATCCGCGTGCGGCAGGACCTGGAGGAGGCGCAGAATGAGCAGACCCGGGAACTAAAGCTCAAGTACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CCA 72 bp GGTGCAAAGGAACAGAGGTCATGGATGCATGAGCTGTaGAGGGTGGAGGCATCCGCTGAGGACTCTGGCACC +
Preference number: 6 (lower is better)
Translates to: GAKEQRSWMHEL*RVEASAEDSGT
Trigger: GGTGCCAGAGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCATGCATCCATGACCTCTGTTCCTTTGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS TCA 72 bp GCCAGGTCTACCAGGTTGAGCTTGCCTACTCGGATATaGTCCTGGCCATCAGAGCCACGCTCACTGCACTCC +
Preference number: 6 (lower is better)
Translates to: ARSTRLSLPTRI*SWPSEPRSLHS
Trigger: GGAGTGCAGTGAGCGTGGCTCTGATGGCCAGGATCATATCCGAGTAGGCAAGCTCAACCTGGTAGACCTGGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 72 bp GCCTTGTACTTGGCTGCAAGCAGCTCTGTAGCCTGCTaGTCCCGCCGTAGATCCTCCAGCATCTTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: ALYLAASSSVAC*SRRRSSSIFSF
Trigger: GAAGGAGAAGATGCTGGAGGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS GCA 72 bp ATGGCCTTGTACTTGGCTGCAAGCAGCTCTGTAGCCTaGTGCTCCCGCCGTAGATCCTCCAGCATCTTCTCC +
Preference number: 6 (lower is better)
Translates to: MALYLAASSSVA*CSRRRSSSIFS
Trigger: GGAGAAGATGCTGGAGGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp AGGAACAGAGGTCATGGATGCATGAGCTGTGGAGGGTaGAGGCATCCGCTGAGGACTCTGGCACCAGGATCT +
Preference number: 6 (lower is better)
Translates to: RNRGHGCMSCGG*RHPLRTLAPGS
Trigger: AGATCCTGGTGCCAGAGTCCTCAGCGGATGCCTCCACCCTCCACAGCTCATGCATCCATGACCTCTGTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CAA 72 bp CCCCCAATGAGTAGCTTGCTTTCCATGGCCTTGTACTaGGCTGCAAGCAGCTCTGTAGCCTGCTGCTCCCGC +
Preference number: 6 (lower is better)
Translates to: PPMSSLLSMALY*AASSSVACCSR
Trigger: GCGGGAGCAGCAGGCTACAGAGCTGCTTGCAGCCAAGTACAAGGCCATGGAAAGCAAGCTACTCATTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp CCTGCTGCAGGGATGAGTAGGTACCACGTAGCTCCATaGTTTCTTCATCGCGGAGCAGCATCTCCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: PAAGMSRYHVAP*FLHRGAASPAA
Trigger: TGCAGCAGGAGATGCTGCTCCGCGATGAAGAAACCATGGAGCTACGTGGTACCTACTCATCCCTGCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS TCA 72 bp TGTTCTGTCTCTCACTGCCGGCCAGGTCTACCAGGTTaGGCTTGCCTACTCGGATATGATCCTGGCCATCAG +
Preference number: 6 (lower is better)
Translates to: CSVSHCRPGLPG*ACLLGYDPGHQ
Trigger: CTGATGGCCAGGATCATATCCGAGTAGGCAAGCTCAACCTGGTAGACCTGGCCGGCAGTGAGAGACAGAACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp CGAACCAGGTACTGCTGGTTCTGGGAGCGGGAGATGTaGGTGAAGATGTGCTCAAAGGCATTCGGGATAACC +
Preference number: 6 (lower is better)
Translates to: RTRYCWFWEREM*VKMCSKAFGIT
Trigger: GGTTATCCCGAATGCCTTTGAGCACATCTTCACCCACATCTCCCGCTCCCAGAACCAGCAGTACCTGGTTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS CCA 72 bp TGGACGCTTCTTCATTTGGCTGTTATTCACTCCAGCTaGCACCAGTGGCTGGAACCTCCACTGCTCCTCCTC +
Preference number: 6 (lower is better)
Translates to: WTLLHLAVIHSS*HQWLEPPLLLL
Trigger: GAGGAGGAGCAGTGGAGGTTCCAGCCACTGGTGCCAGCTGGAGTGAATAACAGCCAAATGAAGAAGCGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS GCA 72 bp TCCATGGTTTCTTCATCGCGGAGCAGCATCTCCTGCTaGATTTCCCGTTCACGGCGTTTCTGTTCCGCAATC +
Preference number: 6 (lower is better)
Translates to: SMVSSSRSSISC*ISRSRRFCSAI
Trigger: GATTGCGGAACAGAAACGCCGTGAACGGGAAATGCAGCAGGAGATGCTGCTCCGCGATGAAGAAACCATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS GCA 72 bp ATCAGGGGCCTCACCGTTTCGTCATACAGGTCGGCCTaGTTGGAGCTAGCATCATACACAGCATCAAAAGTG +
Preference number: 6 (lower is better)
Translates to: IRGLTVSSYRSA*LELASYTASKV
Trigger: CACTTTTGATGCTGTGTATGATGCTAGCTCCAAGCAGGCCGACCTGTATGACGAAACGGTGAGGCCCCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS TCA 72 bp ATAGGCAAATACGGTGCCGTTGAAACCCTGAAGCACTaGGTCTATCAGGGGCCTCACCGTTTCGTCATACAG +
Preference number: 6 (lower is better)
Translates to: IGKYGAVETLKH*VYQGPHRFVIQ
Trigger: CTGTATGACGAAACGGTGAGGCCCCTGATAGACTCAGTGCTTCAGGGTTTCAACGGCACCGTATTTGCCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020999.7
ENSMUST00000220210.2
CDS TCA 72 bp TCCATGTGTAGTACCCGTGGGTCTTGCTCTTGGTCATaGGAAAACTCCATCTCAAAGATAGCCGGTGGGGAC +
Preference number: 6 (lower is better)
Translates to: SMCSTRGSCSWS*ENSISKIAGGD
Trigger: GTCCCCACCGGCTATCTTTGAGATGGAGTTTTCTCATGACCAAGAGCAAGACCCACGGGTACTACACATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS CCA 72 bp CTGGCTGATAGGTCTCTTGTAGCCCACCGCAGAAGTTaGACGCTTCTTCATTTGGCTGTTATTCACTCCAGC +
Preference number: 6 (lower is better)
Translates to: LADRSLVAHRRS*TLLHLAVIHSS
Trigger: GCTGGAGTGAATAACAGCCAAATGAAGAAGCGTCCAACTTCTGCGGTGGGCTACAAGAGACCTATCAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2
CDS GCA 72 bp TATATTTTCAGCTCTGTATCTGGGATGGGACCCCATTaGCATGGCAACCCGAGCATACTGGCTGATAGGTCT +
Preference number: 6 (lower is better)
Translates to: YIFSSVSGMGPH*HGNPSILADRS
Trigger: AGACCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCATCCCAGATACAGAGCTGAAAATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020999.7
ENSMUST00000219895.2
ENSMUST00000220210.2