RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KIF28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000087236

Ensembl transcript IDs: ENSMUST00000131716.4, ENSMUST00000211943.3, ENSMUST00000221136.2, ENSMUST00000223392.2

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTaGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACG +
Preference number: 1 (lower is better)
Translates to: SLYWGWRYRDELKQF*STASPCWKRGTWST
Trigger: CGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR-3UTR TCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGGGTGGCTCAGGTCTGTaGTCCCTGTACTGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLGGSGL*SLYWGW
Trigger: CCAGCCCCAGTACAGGGATCACAGACCTGAGCCACC...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR-3UTR CCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGGAGCTAAAGCAATTCTaGTCCACAGCAAGTCCTTGC +
Preference number: 2 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWELKQF*STASPC
Trigger: GCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTC...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR-3UTR GCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGTCCACAGCAAGTCCTTaGTGGAAAAGAGGCACGTGG +
Preference number: 2 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLSTASP*WKRGTW
Trigger: CCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGA...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR-3UTR CAA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGGTCCACAGCAAGTCCTaGCTGGAAAAGAGGCACGTG +
Preference number: 3 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWVHSKS*LEKRHV
Trigger: CACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGAC...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR TCA 72 bp CCAGTTAAGGCCCAGTGTGGCGGTGGCTCAGGTCTGTaGTCCCTGTACTGGGGCTGGAGGTACAGAGATGAG +
Preference number: 3 (lower is better)
Translates to: PVKAQCGGGSGL*SLYWGWRYRDE
Trigger: CTCATCTCTGTACCTCCAGCCCCAGTACAGGGATCACAGACCTGAGCCACCGCCACACTGGGCCTTAACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR CCA 72 bp TGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTaGTCCACGCATCTGTGCCGCTCACTAAGTCAGAGC +
Preference number: 3 (lower is better)
Translates to: WSTASPCWKRGT*STHLCRSLSQS
Trigger: GCTCTGACTTAGTGAGCGGCACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR GCA 72 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTaGTGGAAAAGAGGCACGTGGTCCACGCATCTGTGC +
Preference number: 3 (lower is better)
Translates to: DELKQFWSTASP*WKRGTWSTHLC
Trigger: GCACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
3UTR CCA 72 bp TGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTaGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACG +
Preference number: 3 (lower is better)
Translates to: WGWRYRDELKQF*STASPCWKRGT
Trigger: CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGTGCATCGCCTCAGTCTaGGGAGCTGTCCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWCIASV*GAVLWP
Trigger: TGGCCAGAGGACAGCTCCTCAGACTGAGGCGATGCA...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGACACCTTCAAGGCTCTaGCCAGCTGGGCATCGGAGC +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWTPSRL*PAGHRS
Trigger: GCTCCGATGCCCAGCTGGCCAGAGCCTTGAAGGTGT...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTCACTCCCTCCGTGCCTaGTCCAGCAGCTGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICHSLRA*SSSWAQ
Trigger: CTGGGCCCAGCTGCTGGAGCAGGCACGGAGGGAGTG...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACCCCCAGCTGCTGTTCTaGCCAGAAACAGGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHPQLLF*PETGWV
Trigger: CACCCAGCCTGTTTCTGGGCAGAACAGCAGCTGGGG...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACACACCTTCAAGGCTCTaGCCAGCTGGGCATCGGAGC +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHTPSRL*PAGHRS
Trigger: GCTCCGATGCCCAGCTGGCCAGAGCCTTGAAGGTGT...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACACACTCCCTCCGTGCCTaGTCCAGCAGCTGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: SLYWGWRYRDELKQFWSTHSLRA*SSSWAQ
Trigger: CTGGGCCCAGCTGCTGGAGCAGGCACGGAGGGAGTG...TGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGTGTACCCCATCTGAATaGCCCGGCTTCCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWCTPSE*PGFHLP
Trigger: AGGAAGATGGAAGCCGGGGCATTCAGATGGGGTACA...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCGTTTCCGCCCAGGGCTaGCTGGAGCAGTTTGGTCAG +
Preference number: 4 (lower is better)
Translates to: GCPRSHSVDQAGPALIEIVSAQG*LEQFGQ
Trigger: CTGACCAAACTGCTCCAGTCAGCCCTGGGCGGAAAC...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGACCCTGATGACCTCTaGCTCTCGCTTCCCGCCAAG +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICDPDDL*LSLPAK
Trigger: CTTGGCGGGAAGCGAGAGGCAGAGGTCATCAGGGTC...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCCCAGCTGCTGTTCTaGCCAGAAACAGGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLPQLLF*PETGWV
Trigger: CACCCAGCCTGTTTCTGGGCAGAACAGCAGCTGGGG...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGGTGAGTGCCTCGTACTaGTCCTCCCACTCCCTCCGT +
Preference number: 4 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLVSASY*SSHSLR
Trigger: ACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCAC...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACATGCGGTCCAAATGCTaGAGCTTTGTCCTGCCGGTG +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHMRSKC*SFVLPV
Trigger: CACCGGCAGGACAAAGCTGCAGCATTTGGACCGCAT...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCGCTCCTCCAGCATCATaGAGTGAGCCAGGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: GCPRSHSVDQAGPALIEIAPPAS*SEPGAA
Trigger: TGCAGCCCCTGGCTCACTGCATGATGCTGGAGGAGC...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGCAGAAACTCTCGAGATaGACCCAAGGCTGCAAAGTG +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWQKLSR*TQGCKV
Trigger: CACTTTGCAGCCTTGGGTGCATCTCGAGAGTTTCTG...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGCCCAGAAACAGGCTaGGTGCTCTGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLCPETG*VLCCSS
Trigger: GCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCA...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATGTTTCCGCCCAGGGCTaGCTGGAGCAGTTTGGTCAG +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHVSAQG*LEQFGQ
Trigger: CTGACCAAACTGCTCCAGTCAGCCCTGGGCGGAAAC...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGAAATTCCCAGGCCTTaGAGGCAGATGGCGTTTGAG +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHEIPRP*RQMAFE
Trigger: CTCAAACGCCATCTGCCTTCAAGGCCTGGGAATTTC...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGTGCTGAGCCCAAGTaGACAACCTCCAGGGGATCC +
Preference number: 4 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLCAEPK*TTSRGS
Trigger: GGATCCCCTGGAGGTTGTTCACTTGGGCTCAGCACA...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp AGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCTGTGCTGAGCCCAAGTaGACAACCTCCAGGGGATCC +
Preference number: 4 (lower is better)
Translates to: SNSGPQQVLAGKEARGPRCAEPK*TTSRGS
Trigger: GGATCCCCTGGAGGTTGTTCACTTGGGCTCAGCACA...GCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTTGCATCGCCTCAGTCTaGGGAGCTGTCCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASCIASV*GAVLWP
Trigger: TGGCCAGAGGACAGCTCCTCAGACTGAGGCGATGCA...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATGACCCTGATGACCTCTaGCTCTCGCTTCCCGCCAAG +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHDPDDL*LSLPAK
Trigger: CTTGGCGGGAAGCGAGAGGCAGAGGTCATCAGGGTC...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGCTCCTCCAGCATCATaGAGTGAGCCAGGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASAPPAS*SEPGAA
Trigger: TGCAGCCCCTGGCTCACTGCATGATGCTGGAGGAGC...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGGTCTTCCTCACCATGTaGCCATCCTTCCGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLVFLTM*PSFRGA
Trigger: TGCTCCCCGGAAGGATGGGCACATGGTGAGGAAGAC...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGGAAGTCAATCCTCTTaGCCAACAGCTCCAGAGGGT +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHGSQSS*PTAPEG
Trigger: ACCCTCTGGAGCTGTTGGGCAAGAGGATTGACTTCC...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGTTTGCACTTGCTGTGTaGTGCGACTGTCACTTTACC +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWFALAV*CDCHFT
Trigger: GGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAA...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGGGAGGTCATAGCCCCTaGAATCTGACGATGCTAAAT +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWGGHSP*NLTMLN
Trigger: ATTTAGCATCGTCAGATTCCAGGGGCTATGACCTCC...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp TCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGCCGCGTGTCTACCATGATGTaGCCTTCACCTGTGAGCAGG +
Preference number: 4 (lower is better)
Translates to: STASPCWKRGTWSTHLCRVSTMM*PSPVSR
Trigger: CCTGCTCACAGGTGAAGGCCACATCATGGTAGACAC...GCGGCACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCAGTGGACAGGTGTTaGTCACCGCTCTGTTGCGAA +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLPVDRC*SPLCCE
Trigger: TTCGCAACAGAGCGGTGATCAACACCTGTCCACTGG...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp AAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTCTGCTCCTGTGTGAGTaGCTCGTACTGCTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: KSLCRPGWPCTHRDPPVSLLLCE*LVLLLP
Trigger: TGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAG...AGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTATGCGGTCCAAATGCTaGAGCTTTGTCCTGCCGGTG +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICMRSKC*SFVLPV
Trigger: CACCGGCAGGACAAAGCTGCAGCATTTGGACCGCAT...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGCCGCAGATGCACCCAAGGCTaGAAAGTGGACAGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: STASPCWKRGTWSTHLCRRCTQG*KVDSLF
Trigger: GAAGAGACTGTCCACTTTGCAGCCTTGGGTGCATCT...GCGGCACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCGAACTTTCTTCCCCATaGCTAGGTCGGCCAGAGCAC +
Preference number: 4 (lower is better)
Translates to: GCPRSHSVDQAGPALIEIELSSP*LGRPEH
Trigger: GTGCTCTGGCCGACCTAGCCATGGGGAAGAAAGTTC...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGGAACTTTCTTCCCCATaGCTAGGTCGGCCAGAGCAC +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLELSSP*LGRPEH
Trigger: GTGCTCTGGCCGACCTAGCCATGGGGAAGAAAGTTC...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATGCTGGGGTCAGCTTaGTCATCTCCAGGGCTGACA +
Preference number: 4 (lower is better)
Translates to: SNSGPQQVLAGKEARGPRMLGSA*SSPGLT
Trigger: TGTCAGCCCTGGAGATGACCAAGCTGACCCCAGCAT...GCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGTGCTGGCCTTGTAGCTCCTTCTaGATTATCCAGCTTACGGTA +
Preference number: 4 (lower is better)
Translates to: QAGPALIEIHLSLPPTCWPCSSF*IIQLTV
Trigger: TACCGTAAGCTGGATAATCCAGAAGGAGCTACAAGG...CCAGCACGTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACAAAAACCCCAGCTGTTaGTCCTCCCTGACTCTTAAG +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHKNPSC*SSLTLK
Trigger: CTTAAGAGTCAGGGAGGATCAACAGCTGGGGTTTTT...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCCAGTGGACAGGTGTTaGTCACCGCTCTGTTGCGAA +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHPVDRC*SPLCCE
Trigger: TTCGCAACAGAGCGGTGATCAACACCTGTCCACTGG...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp AGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCGAAATTCCCAGGCCTTaGAGGCAGATGGCGTTTGAG +
Preference number: 4 (lower is better)
Translates to: SNSGPQQVLAGKEARGPREIPRP*RQMAFE
Trigger: CTCAAACGCCATCTGCCTTCAAGGCCTGGGAATTTC...GCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTATCTTGTACCCCATCTaGATGCCCCGGCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICILYPI*MPRLPS
Trigger: AGATGGAAGCCGGGGCATTCAGATGGGGTACAAGAT...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGGTGAGTGCCTCGTACTaGTCCTCCCACTCCCTCCGT +
Preference number: 4 (lower is better)
Translates to: DELKQFWSTASPCWKRGTVSASY*SSHSLR
Trigger: ACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCAC...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACACTGCTCCTGTGTGAGTaGCTCGTACTGCTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: SLYWGWRYRDELKQFWSTLLLCE*LVLLLP
Trigger: TGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAG...TGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGTCTTCCTCACCATGTaGCCATCCTTCCGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: SLYWGWRYRDELKQFWSTVFLTM*PSFRGA
Trigger: TGCTCCCCGGAAGGATGGGCACATGGTGAGGAAGAC...TGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGGAAGTCAATCCTCTTaGCCAACAGCTCCAGAGGGT +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICGSQSS*PTAPEG
Trigger: ACCCTCTGGAGCTGTTGGGCAAGAGGATTGACTTCC...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTGTACCCCATCTGAATaGCCCGGCTTCCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: PRSHSVDQAGPALIEIHLCTPSE*PGFHLP
Trigger: AGGAAGATGGAAGCCGGGGCATTCAGATGGGGTACA...CAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGCCCAGAAACAGGCTaGGTGCTCTGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: DELKQFWSTASPCWKRGTCPETG*VLCCSS
Trigger: GCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCA...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGGACCCCCGTGAGCTGTaGGTCTTCATTGACATTGAG +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLDPREL*VFIDIE
Trigger: CTCAATGTCAATGAAGACCCACAGCTCACGGGGGTC...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AAAATCCAGTTAAGGCCCAGTGTGGCGGTGGCTCAGGTCTGTGATCCCTGTACTATGCTGGGGTCAGCTTaGTCATCTCCAGGGCTGACA +
Preference number: 4 (lower is better)
Translates to: KIQLRPSVAVAQVCDPCTMLGSA*SSPGLT
Trigger: TGTCAGCCCTGGAGATGACCAAGCTGACCCCAGCAT...AGTACAGGGATCACAGACCTGAGCCACCGCCACACTGGGCCTTAACTGGATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGGTGTCTACCATGATGTaGCCTTCACCTGTGAGCAGG +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLVSTMM*PSPVSR
Trigger: CCTGCTCACAGGTGAAGGCCACATCATGGTAGACAC...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTCAGCTTCTGGGCCTGTaGAGCAGAACCAGCGTTTTC +
Preference number: 4 (lower is better)
Translates to: KSLCRPGWPCTHRDPPVSQLLGL*SRTSVF
Trigger: GAAAACGCTGGTTCTGCTCCACAGGCCCAGAAGCTG...AGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131716.4
CDS-3UTR CCA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGGGATTATCCAGCTTCTaGGCCTGTGGAGCAGAACCA +
Preference number: 4 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLGLSSF*ACGAEP
Trigger: TGGTTCTGCTCCACAGGCCCAGAAGCTGGATAATCC...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131716.4
CDS-3UTR TCA 90 bp TCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGCCGCTGGTTAGGCTTAAATTaGCCCTTGATCCTTCCCTCA +
Preference number: 4 (lower is better)
Translates to: STASPCWKRGTWSTHLCRWLGLN*PLILPS
Trigger: TGAGGGAAGGATCAAGGGTCAATTTAAGCCTAACCA...GCGGCACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACGATGAACTTGGCTTTTaGCCAAATCCATACCTCGTG +
Preference number: 4 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHDELGF*PNPYLV
Trigger: CACGAGGTATGGATTTGGTCAAAAGCCAAGTTCATC...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTTCCTTTAGCCATTTaGCACCAAGGCACCGGACGA +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHLPLAI*HQGTGR
Trigger: TCGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAG...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTCTTCCTTTAGCCATTTaGCACCAAGGCACCGGACGA +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASLPLAI*HQGTGR
Trigger: TCGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAG...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATATCTTGTACCCCATCTaGATGCCCCGGCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHILYPI*MPRLPS
Trigger: AGATGGAAGCCGGGGCATTCAGATGGGGTACAAGAT...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTCAGAAACTCTCGAGATaGACCCAAGGCTGCAAAGTG +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICQKLSR*TQGCKV
Trigger: CACTTTGCAGCCTTGGGTGCATCTCGAGAGTTTCTG...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGACCCCCGTGAGCTGTaGGTCTTCATTGACATTGAG +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASDPREL*VFIDIE
Trigger: CTCAATGTCAATGAAGACCCACAGCTCACGGGGGTC...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGACACAGCTAAGATGCTaGGGTCAGCTTGGTCATCTC +
Preference number: 4 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLTQLRC*GQLGHL
Trigger: GAGATGACCAAGCTGACCCCAGCATCTTAGCTGTGT...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp GCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCACTTCGCTCATCTGATTaGCTTCAACAACCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: AILVHSKSLLEKRHVVHALRSSD*LQQPAA
Trigger: TGCCGCTGGTTGTTGAAGCCAATCAGATGAGCGAAG...TGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTTGTAGCTCCTTCTaGATTATCCAGCTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLPCSSF*IIQLLG
Trigger: GCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAGG...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131716.4
CDS-3UTR TCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGTCACAGGAGCCATTGTaGATGAAGAACTTGAGGACC +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLSQEPL*MKNLRT
Trigger: GGTCCTCAAGTTCTTCATTCACAATGGCTCCTGTGA...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGTGTCCAGGAAAACCTaGTTGAACTGGATGGCGATT +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICVSRKT*LNWMAI
Trigger: AATCGCCATCCAGTTCAAGCAGGTTTTCCTGGACAC...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTTTGACATTGAGGAGGTaGGGGAGAATCCTTACCATC +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICLTLRR*GRILTI
Trigger: GATGGTAAGGATTCTCCCGCACCTCCTCAATGTCAA...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp AGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCTTGACATTGAGGAGGTaGGGGAGAATCCTTACCATC +
Preference number: 4 (lower is better)
Translates to: SNSGPQQVLAGKEARGPRLTLRR*GRILTI
Trigger: GATGGTAAGGATTCTCCCGCACCTCCTCAATGTCAA...GCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATGCACTTGCTGTGTGGTaGGACTGTCACTTTACCATC +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHALAVW*DCHFTI
Trigger: GATGGTAAAGTGACAGTCGCACCACACAGCAAGTGC...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp AAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTAGATGCACCCAAGGCTaGAAAGTGGACAGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: KSLCRPGWPCTHRDPPVSRCTQG*KVDSLF
Trigger: GAAGAGACTGTCCACTTTGCAGCCTTGGGTGCATCT...AGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTCTTCGCTCATCTGATTaGCTTCAACAACCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: KSLCRPGWPCTHRDPPVSLRSSD*LQQPAA
Trigger: TGCCGCTGGTTGTTGAAGCCAATCAGATGAGCGAAG...AGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTAAAAACCCCAGCTGTTaGTCCTCCCTGACTCTTAAG +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASKNPSC*SSLTLK
Trigger: CTTAAGAGTCAGGGAGGATCAACAGCTGGGGTTTTT...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp AGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCTGTCATCCTGATTTTTaGTCCTTGCTCCACCAGCTT +
Preference number: 4 (lower is better)
Translates to: SNSGPQQVLAGKEARGPRCHPDF*SLLHQL
Trigger: AAGCTGGTGGAGCAAGGATCAAAAATCAGGATGACA...GCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGGGAAGCATGTTTATCTaGAATTCCCAGGCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: PRSHSVDQAGPALIEIHLGSMFI*NSQALK
Trigger: CTTCAAGGCCTGGGAATTTCAGATAAACATGCTTCC...CAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTTGGTCACCTTCACCATaGCCTCTTTTTGGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASWSPSP*PLFGGH
Trigger: ATGACCTCCAAAAAGAGGTCATGGTGAAGGTGACCA...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCGATGAACTTGGCTTTTaGCCAAATCCATACCTCGTG +
Preference number: 4 (lower is better)
Translates to: GCPRSHSVDQAGPALIEIDELGF*PNPYLV
Trigger: CACGAGGTATGGATTTGGTCAAAAGCCAAGTTCATC...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp AAAATCCAGTTAAGGCCCAGTGTGGCGGTGGCTCAGGTCTGTGATCCCTGTACTGACATCGCTCTGGCCTaGAAATTTACTAGCTGGATC +
Preference number: 4 (lower is better)
Translates to: KIQLRPSVAVAQVCDPCTDIALA*KFTSWI
Trigger: GATCCAGCTAGTAAATTTGCAGGCCAGAGCGATGTC...AGTACAGGGATCACAGACCTGAGCCACCGCCACACTGGGCCTTAACTGGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGCAGCACTTGCTGTGTGGTaGGACTGTCACTTTACCATC +
Preference number: 4 (lower is better)
Translates to: LYWGWRYRDELKQFWSTAALAVW*DCHFTI
Trigger: GATGGTAAAGTGACAGTCGCACCACACAGCAAGTGC...TGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGAAAACCTGCTTGAACTaGATGGCGATTAGCATGTGG +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLKTCLN*MAISMW
Trigger: CCACATGCTAATCGCCATCCAGTTCAAGCAGGTTTT...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTTTTGCACTTGCTGTGTaGTGCGACTGTCACTTTACC +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASFALAV*CDCHFT
Trigger: GGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAA...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGCAACACAGCTAAGATGCTaGGGTCAGCTTGGTCATCTC +
Preference number: 4 (lower is better)
Translates to: LYWGWRYRDELKQFWSTATQLRC*GQLGHL
Trigger: GAGATGACCAAGCTGACCCCAGCATCTTAGCTGTGT...TGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGGAGGTCATAGCCCCTaGAATCTGACGATGCTAAAT +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASGGHSP*NLTMLN
Trigger: ATTTAGCATCGTCAGATTCCAGGGGCTATGACCTCC...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTTGTCATCCTGATTTTTaGTCCTTGCTCCACCAGCTT +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASCHPDF*SLLHQL
Trigger: AAGCTGGTGGAGCAAGGATCAAAAATCAGGATGACA...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGCATGGACGCTGTCATCCTaGTTTTTGATCCTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: LYWGWRYRDELKQFWSTAWTLSS*FLILAP
Trigger: TGGAGCAAGGATCAAAAATCAGGATGACAGCGTCCA...TGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATTGGTTAGGCTTAAATTaGCCCTTGATCCTTCCCTCA +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHWLGLN*PLILPS
Trigger: TGAGGGAAGGATCAAGGGTCAATTTAAGCCTAACCA...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGCATGGTCACCTTCACCATaGCCTCTTTTTGGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: LYWGWRYRDELKQFWSTAWSPSP*PLFGGH
Trigger: ATGACCTCCAAAAAGAGGTCATGGTGAAGGTGACCA...TGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGACATCGCTCTGGCCTaGAAATTTACTAGCTGGATC +
Preference number: 4 (lower is better)
Translates to: SLYWGWRYRDELKQFWSTDIALA*KFTSWI
Trigger: GATCCAGCTAGTAAATTTGCAGGCCAGAGCGATGTC...TGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGTGTCCAGGAAAACCTaGTTGAACTGGATGGCGATT +
Preference number: 4 (lower is better)
Translates to: SLYWGWRYRDELKQFWSTVSRKT*LNWMAI
Trigger: AATCGCCATCCAGTTCAAGCAGGTTTTCCTGGACAC...TGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATTGCCAAAGCCAATCATaGAGTAGCTTTTTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHCQSQS*SSFFQS
Trigger: GCTCTGGAAAAAGCTACTCCATGATTGGCTTTGGCA...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTAAAACCTGCTTGAACTaGATGGCGATTAGCATGTGG +
Preference number: 4 (lower is better)
Translates to: KSLCRPGWPCTHRDPPVSKTCLN*MAISMW
Trigger: CCACATGCTAATCGCCATCCAGTTCAAGCAGGTTTT...AGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTCACAGGAGCCATTGTaGATGAAGAACTTGAGGACC +
Preference number: 4 (lower is better)
Translates to: DELKQFWSTASPCWKRGTSQEPL*MKNLRT
Trigger: GGTCCTCAAGTTCTTCATTCACAATGGCTCCTGTGA...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCGGAAGCATGTTTATCTaGAATTCCCAGGCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: LKQFWSTASPCWKRGTWSGSMFI*NSQALK
Trigger: CTTCAAGGCCTGGGAATTTCAGATAAACATGCTTCC...GGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCTCTCCTGCTCTAATTTaGGCAACTTCTGATAAAGCT +
Preference number: 4 (lower is better)
Translates to: GCPRSHSVDQAGPALIEISPALI*ATSDKA
Trigger: AGCTTTATCAGAAGTTGCTCAAATTAGAGCAGGAGA...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTTCTCCTGCTCTAATTTaGGCAACTTCTGATAAAGCT +
Preference number: 4 (lower is better)
Translates to: SGPQQVLAGKEARGPRICSPALI*ATSDKA
Trigger: AGCTTTATCAGAAGTTGCTCAAATTAGAGCAGGAGA...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATTTTCCAGTGAAGCCTTaGGAAACACATTTTCACCTC +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHFPVKP*ETHFHL
Trigger: GAGGTGAAAATGTGTTTCTCAAGGCTTCACTGGAAA...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCTGCCAAAGCCAATCATaGAGTAGCTTTTTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: LKQFWSTASPCWKRGTWSCQSQS*SSFFQS
Trigger: GCTCTGGAAAAAGCTACTCCATGATTGGCTTTGGCA...GGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCCTCTTCACACACTCTTaGAATAAGACCCTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: SNSGPQQVLAGKEARGPRLFTHS*NKTLVC
Trigger: ACAAACAAGGGTCTTATTCCAAGAGTGTGTGAAGAG...GCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp CTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCTTAACTTGTGTAAACTaGACTCCAGCAGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LKQFWSTASPCWKRGTWSLTCVN*TPAGPP
Trigger: TGGAGGACCTGCTGGAGTCCAGTTTACACAAGTTAA...GGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTCTCTTCACACACTCTTaGAATAAGACCCTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASLFTHS*NKTLVC
Trigger: ACAAACAAGGGTCTTATTCCAAGAGTGTGTGAAGAG...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTTAACTTGTGTAAACTaGACTCCAGCAGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: DELKQFWSTASPCWKRGTLTCVN*TPAGPP
Trigger: TGGAGGACCTGCTGGAGTCCAGTTTACACAAGTTAA...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR TCA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTTTCCAGTGAAGCCTTaGGAAACACATTTTCACCTC +
Preference number: 4 (lower is better)
Translates to: DELKQFWSTASPCWKRGTFPVKP*ETHFHL
Trigger: GAGGTGAAAATGTGTTTCTCAAGGCTTCACTGGAAA...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTCAGCTTTTCAATTTGTaGATAATTCTCACAAGGCAC +
Preference number: 4 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASQLFNL*IILTRH
Trigger: GTGCCTTGTGAGAATTATGCACAAATTGAAAAGCTG...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CCA 90 bp AGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGATGCTAAACATAACCTaGGGTTCTAGATTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: SHSVDQAGPALIEIHLSLMLNIT*GSRFSF
Trigger: AAAGGAAAATCTAGAACCCCAGGTTATGTTTAGCAT...CAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATTCTAGATTTTCCTTTTaGTTCTCAATAGCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHSRFSF*FSIAWK
Trigger: CTTCCAAGCTATTGAGAAGCAAAAGGAAAATCTAGA...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR GCA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTCTAGATTTTCCTTTTaGTTCTCAATAGCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: DELKQFWSTASPCWKRGTSRFSF*FSIAWK
Trigger: CTTCCAAGCTATTGAGAAGCAAAAGGAAAATCTAGA...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp CTGCTCCTGTGTGAGTGCCTCGTACTGCTCCTCCCACTCCCTCCGTaGCTGCTCCAGCAGCTGGGCCCAGGTCCCCTGATTCCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: LLLCECLVLLLPLPP*LLQQLGPGPLIPQL
Trigger: CAGCTGGGGAATCAGGGGACCTGGGCCCAGCTGCTGGAGCAGGCACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 90 bp GTTCTGCCCAGAAACAGGCTGGGTGCTCTGCTGCTCCAGCGCCCCTaGATCCAAGCAGCAGTGCGTTCTCGGCCCTGGAAGCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: VLPRNRLGALLLQRP*IQAAVRSRPWKLSP
Trigger: TGGCGAGAGCTTCCAGGGCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCAGAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp GGCTGGGTGCTCTGCTGCTCCAGCGCCCCTGAATCCAAGCAGCAGTaGGTTCTCGGCCCTGGAAGCTCTCGCCAGTGGACAGGTGTTGAT +
Preference number: 5 (lower is better)
Translates to: GWVLCCSSAPESKQQ*VLGPGSSRQWTGVD
Trigger: ATCAACACCTGTCCACTGGCGAGAGCTTCCAGGGCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAGCACCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 90 bp GGAACACAGCTAAGATGCTGGGGTCAGCTTGGTCATCTCCAGGGCTaGCACAACCAAGCGTGGCCACACTCACGCCCTCGGCTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: GTQLRCWGQLGHLQG*HNQAWPHSRPRLQP
Trigger: GGGCTGCAGCCGAGGGCGTGAGTGTGGCCACGCTTGGTTGTGTCAGCCCTGGAGATGACCAAGCTGACCCCAGCATCTTAGCTGTGTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 90 bp ATTCCCCAGCTGCTGTTCTGCCCAGAAACAGGCTGGGTGCTCTGCTaGTCCAGCGCCCCTGAATCCAAGCAGCAGTGCGTTCTCGGCCCT +
Preference number: 5 (lower is better)
Translates to: IPQLLFCPETGWVLC*SSAPESKQQCVLGP
Trigger: AGGGCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCAGAACAGCAGCTGGGGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp CTGATTCCCCAGCTGCTGTTCTGCCCAGAAACAGGCTGGGTGCTCTaGTGCTCCAGCGCCCCTGAATCCAAGCAGCAGTGCGTTCTCGGC +
Preference number: 5 (lower is better)
Translates to: LIPQLLFCPETGWVL*CSSAPESKQQCVLG
Trigger: GCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCAGAACAGCAGCTGGGGAATCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp GGGAGAATCCTTACCATCTTCTGCTCCTGTGTGAGTGCCTCGTACTaGTCCTCCCACTCCCTCCGTGCCTGCTCCAGCAGCTGGGCCCAG +
Preference number: 5 (lower is better)
Translates to: GRILTIFCSCVSASY*SSHSLRACSSSWAQ
Trigger: CTGGGCCCAGCTGCTGGAGCAGGCACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAGAAGATGGTAAGGATTCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp GAGGAGGTGCGGGAGAATCCTTACCATCTTCTGCTCCTGTGTGAGTaGCTCGTACTGCTCCTCCCACTCCCTCCGTGCCTGCTCCAGCAG +
Preference number: 5 (lower is better)
Translates to: EEVRENPYHLLLLCE*LVLLLPLPPCLLQQ
Trigger: CTGCTGGAGCAGGCACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAGAAGATGGTAAGGATTCTCCCGCACCTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp TCCAGGGCTGACACAACCAAGCGTGGCCACACTCACGCCCTCGGCTaGAGCCCGCTCCAGCTGGAAAAAGTCGTAGTCGAATCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: SRADTTKRGHTHALG*SPLQLEKVVVESAQ
Trigger: CTGAGCAGATTCGACTACGACTTTTTCCAGCTGGAGCGGGCTGCAGCCGAGGGCGTGAGTGTGGCCACGCTTGGTTGTGTCAGCCCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 90 bp GTGTCTACCATGATGTGGCCTTCACCTGTGAGCAGGACATCCAGCTaGGAGACGCCCAAGGGGGCACAGCCTTCTTGGAGGCCCCACAGA +
Preference number: 5 (lower is better)
Translates to: VSTMMWPSPVSRTSS*ETPKGAQPSWRPHR
Trigger: TCTGTGGGGCCTCCAAGAAGGCTGTGCCCCCTTGGGCGTCTCTCAGCTGGATGTCCTGCTCACAGGTGAAGGCCACATCATGGTAGACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
ENSMUST00000223392.2
CDS-3UTR CAA 90 bp TCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGCCGCGATGCTGGGGTCAGCTaGGTCATCTCCAGGGCTGAC +
Preference number: 5 (lower is better)
Translates to: STASPCWKRGTWSTHLCRDAGVS*VISRAD
Trigger: GTCAGCCCTGGAGATGACCAAGCTGACCCCAGCATC...GCGGCACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCGGGGGCACAGCCTTCTaGGAGGCCCCACAGATCGAC +
Preference number: 5 (lower is better)
Translates to: GCPRSHSVDQAGPALIEIGGTAF*EAPQID
Trigger: GTCGATCTGTGGGGCCTCCAAGAAGGCTGTGCCCCC...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 90 bp CCATGTCTTCCTCACCATGTGCCCATCCTTCCGGGGAGCAGGGTGTaGTTCGAATGTGTAGCACTGCCTCCTCCAGCCCGTCACAGTTCA +
Preference number: 5 (lower is better)
Translates to: PCLPHHVPILPGSRV*FECVALPPPARHSS
Trigger: TGAACTGTGACGGGCTGGAGGAGGCAGTGCTACACATTCGAATCACACCCTGCTCCCCGGAAGGATGGGCACATGGTGAGGAAGACATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 90 bp AACACCTTCAAGGCTCTGGCCAGCTGGGCATCGGAGCTGGCCTGCTaGGCACACACTTGCTTAGCCTCTCTAGCAGCTGTCCTTGTAGCT +
Preference number: 5 (lower is better)
Translates to: NTFKALASWASELAC*AHTCLASLAAVLVA
Trigger: AGCTACAAGGACAGCTGCTAGAGAGGCTAAGCAAGTGTGTGCTCAGCAGGCCAGCTCCGATGCCCAGCTGGCCAGAGCCTTGAAGGTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 90 bp CTTGATCCTTCCCTCAGACGGTCTCCTTCAGACCCTGATGACCTCTaGCTCTCGCTTCCCGCCAAGTCCACCATGTTGATGCTGGACCGT +
Preference number: 5 (lower is better)
Translates to: LDPSLRRSPSDPDDL*LSLPAKSTMLMLDR
Trigger: ACGGTCCAGCATCAACATGGTGGACTTGGCGGGAAGCGAGAGGCAGAGGTCATCAGGGTCTGAAGGAGACCGTCTGAGGGAAGGATCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 90 bp CCTCGGCTGCAGCCCGCTCCAGCTGGAAAAAGTCGTAGTCGAATCTaGTCAGGTCTTCAGCACCTCGCTCGGAGGGAAATCCGACATAGA +
Preference number: 5 (lower is better)
Translates to: PRLQPAPAGKSRSRI*SGLQHLARREIRHR
Trigger: TCTATGTCGGATTTCCCTCCGAGCGAGGTGCTGAAGACCTGAGCAGATTCGACTACGACTTTTTCCAGCTGGAGCGGGCTGCAGCCGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCAGATGCTGGGGTCAGCTaGGTCATCTCCAGGGCTGAC +
Preference number: 5 (lower is better)
Translates to: AILVHSKSLLEKRHVVHADAGVS*VISRAD
Trigger: GTCAGCCCTGGAGATGACCAAGCTGACCCCAGCATC...TGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGCAGGGGGCACAGCCTTCTaGGAGGCCCCACAGATCGAC +
Preference number: 5 (lower is better)
Translates to: LYWGWRYRDELKQFWSTAGGTAF*EAPQID
Trigger: GTCGATCTGTGGGGCCTCCAAGAAGGCTGTGCCCCC...TGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CCA 90 bp GAATGCATGGAGATCACACACTGGCTTCCAGAGTTCTTTTCTCTCTaGCTGAACGGCCGCACCCGGACGGCCACTCTCACACTGTCCGAT +
Preference number: 5 (lower is better)
Translates to: ECMEITHWLPEFFSL*LNGRTRTATLTLSD
Trigger: ATCGGACAGTGTGAGAGTGGCCGTCCGGGTGCGGCCGTTCAGCCAGAGAGAAAAGAACTCTGGAAGCCAGTGTGTGATCTCCATGCATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp GGGTCTCGGATGCTGATGTTTCCGGAATGCATGGAGATCACACACTaGCTTCCAGAGTTCTTTTCTCTCTGGCTGAACGGCCGCACCCGG +
Preference number: 5 (lower is better)
Translates to: GSRMLMFPECMEITH*LPEFFSLWLNGRTR
Trigger: CCGGGTGCGGCCGTTCAGCCAGAGAGAAAAGAACTCTGGAAGCCAGTGTGTGATCTCCATGCATTCCGGAAACATCAGCATCCGAGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGCTGCTGGCGTTCATGTaGGTGGACGCTGTCATCCTG +
Preference number: 5 (lower is better)
Translates to: FWSTASPCWKRGTWSTHLLLAFM*VDAVIL
Trigger: CAGGATGACAGCGTCCACCAACATGAACGCCAGCAG...CAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCACTGCTGGCGTTCATGTaGGTGGACGCTGTCATCCTG +
Preference number: 5 (lower is better)
Translates to: AILVHSKSLLEKRHVVHALLAFM*VDAVIL
Trigger: CAGGATGACAGCGTCCACCAACATGAACGCCAGCAG...TGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACTTGATCACCGCTCTGTaGCGAACCTTCTTAGCCCTC +
Preference number: 5 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHLITAL*RTFLAL
Trigger: GAGGGCTAAGAAGGTTCGCAACAGAGCGGTGATCAA...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCCTCCCACTCTTCCTTTAGCCATTaGACACCAAGGCACCGGACG +
Preference number: 5 (lower is better)
Translates to: CRPGWPCTHRDPPVSASHSSFSH*TPRHRT
Trigger: CGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAGA...GTGGGAGGCAGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 90 bp GCCGAAGCATTTGATCATCTTCGGGAGGTCTGCATCGCCTCAGTCTaGGGAGCTGTCCTCTGGCCACACCCATGCCTTGATAGAACACCT +
Preference number: 5 (lower is better)
Translates to: AEAFDHLREVCIASV*GAVLWPHPCLDRTP
Trigger: AGGTGTTCTATCAAGGCATGGGTGTGGCCAGAGGACAGCTCCTCAGACTGAGGCGATGCAGACCTCCCGAAGATGATCAAATGCTTCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATGGAAGTCAATCCTCTaGCCCAACAGCTCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: AILVHSKSLLEKRHVVHAWKSIL*PNSSRG
Trigger: CCCTCTGGAGCTGTTGGGCAAGAGGATTGACTTCCA...TGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTTGGAAGTCAATCCTCTaGCCCAACAGCTCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: SGPQQVLAGKEARGPRICWKSIL*PNSSRG
Trigger: CCCTCTGGAGCTGTTGGGCAAGAGGATTGACTTCCA...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTGCTGACTGGAGCAGTTaGGTCAGAACAGAATCCCTG +
Preference number: 5 (lower is better)
Translates to: SGPQQVLAGKEARGPRICADWSS*VRTESL
Trigger: CAGGGATTCTGTTCTGACCAAACTGCTCCAGTCAGC...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTTGATCACCGCTCTGTaGCGAACCTTCTTAGCCCTC +
Preference number: 5 (lower is better)
Translates to: PRSHSVDQAGPALIEIHLLITAL*RTFLAL
Trigger: GAGGGCTAAGAAGGTTCGCAACAGAGCGGTGATCAA...CAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CCA 90 bp CAGGATGATGCGGTCCAAATGCTGCAGCTTTGTCCTGCCGGTGACTaGTACCCCATTAACAATGACTTTGCACTTGCTGTGTGGTGCGAC +
Preference number: 5 (lower is better)
Translates to: QDDAVQMLQLCPAGD*YPINNDFALAVWCD
Trigger: GTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGGCAGGACAAAGCTGCAGCATTTGGACCGCATCATCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp CGAAGGAAGCATGTTTATCTGAAATTCCCAGGCCTTGAAGGCAGATaGCGTTTGAGGCAGCTCGACCAACATCACAGGAGCCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: RRKHVYLKFPGLEGR*RLRQLDQHHRSLLL
Trigger: GAGCAGCAGGCTCCTGTGATGTTGGTCGAGCTGCCTCAAACGCCATCTGCCTTCAAGGCCTGGGAATTTCAGATAAACATGCTTCCTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS-3UTR CAA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCTCCAGGAAAACCTGCTaGAACTGGATGGCGATTAGC +
Preference number: 5 (lower is better)
Translates to: GCPRSHSVDQAGPALIEISRKTC*NWMAIS
Trigger: GCTAATCGCCATCCAGTTCAAGCAGGTTTTCCTGGA...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp AAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTCTCTGCTGACTGGAGCAGTTaGGTCAGAACAGAATCCCTG +
Preference number: 5 (lower is better)
Translates to: KSLCRPGWPCTHRDPPVSADWSS*VRTESL
Trigger: CAGGGATTCTGTTCTGACCAAACTGCTCCAGTCAGC...AGAGACAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTCACCATGACCTCTTTTaGGAGGTCATAGCCCCTGGA +
Preference number: 5 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASHHDLF*EVIAPG
Trigger: TCCAGGGGCTATGACCTCCAAAAAGAGGTCATGGTG...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp AAAATCCAGTTAAGGCCCAGTGTGGCGGTGGCTCAGGTCTGTGATCCCTGTACTCACCATGACCTCTTTTaGGAGGTCATAGCCCCTGGA +
Preference number: 5 (lower is better)
Translates to: KIQLRPSVAVAQVCDPCTHHDLF*EVIAPG
Trigger: TCCAGGGGCTATGACCTCCAAAAAGAGGTCATGGTG...AGTACAGGGATCACAGACCTGAGCCACCGCCACACTGGGCCTTAACTGGATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp AAAATCCAGTTAAGGCCCAGTGTGGCGGTGGCTCAGGTCTGTGATCCCTGTACTTCTTCCTTTAGCCATTaGACACCAAGGCACCGGACG +
Preference number: 5 (lower is better)
Translates to: KIQLRPSVAVAQVCDPCTSSFSH*TPRHRT
Trigger: CGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAGA...AGTACAGGGATCACAGACCTGAGCCACCGCCACACTGGGCCTTAACTGGATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 90 bp CTTCCATCTTCCTTTAGCCATTTGACACCAAGGCACCGGACGATGTaGGTCTGGAAGTCAATCCTCTTGCCCAACAGCTCCAGAGGGTCA +
Preference number: 5 (lower is better)
Translates to: LPSSFSHLTPRHRTM*VWKSILLPNSSRGS
Trigger: TGACCCTCTGGAGCTGTTGGGCAAGAGGATTGACTTCCAGACTCACATCGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAGATGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 90 bp TGTACCCCATCTGAATGCCCCGGCTTCCATCTTCCTTTAGCCATTTaGCACCAAGGCACCGGACGATGTGAGTCTGGAAGTCAATCCTCT +
Preference number: 5 (lower is better)
Translates to: CTPSECPGFHLPLAI*HQGTGRCESGSQSS
Trigger: AGAGGATTGACTTCCAGACTCACATCGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAGATGGAAGCCGGGGCATTCAGATGGGGTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTTCCAGGAAAACCTGCTaGAACTGGATGGCGATTAGC +
Preference number: 5 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASSRKTC*NWMAIS
Trigger: GCTAATCGCCATCCAGTTCAAGCAGGTTTTCCTGGA...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCCACCTGTTGCTTCTCAATAGCTaGGAAGAGCTCTTCACACAC +
Preference number: 5 (lower is better)
Translates to: PRSHSVDQAGPALIEIHLLLLNS*EELFTH
Trigger: GTGTGTGAAGAGCTCTTCCAAGCTATTGAGAAGCAA...CAGGTGGATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTGTACACTGGAAAATGTCTaGGTGTCTACCATGATGTGG +
Preference number: 5 (lower is better)
Translates to: SGPQQVLAGKEARGPRICTLENV*VSTMMW
Trigger: CCACATCATGGTAGACACCAAGACATTTTCCAGTGT...ACAGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp GGGGATCCCAGAAAGGGTCATCTTCCTGAGCTACGTGGCTGTCTCTaGTCTCTAGAAAACGCTGGTAAAGTTCCTCCATCAAGAATTTCC +
Preference number: 5 (lower is better)
Translates to: GDPRKGHLPELRGCL*SLENAGKVPPSRIS
Trigger: GGAAATTCTTGATGGAGGAACTTTACCAGCGTTTTCTAGAGAGCAGAGACAGCCACGTAGCTCAGGAAGATGACCCTTTCTGGGATCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp CGAAGGAAGCATGTTTATCTGAAATTCCCAGGCCTTGAAGGCAGATaGCGTTTGAGGCAGCTCGACCAACATCACAGGAGCCATTGTGAA +
Preference number: 5 (lower is better)
Translates to: RRKHVYLKFPGLEGR*RLRQLDQHHRSHCE
Trigger: TTCACAATGGCTCCTGTGATGTTGGTCGAGCTGCCTCAAACGCCATCTGCCTTCAAGGCCTGGGAATTTCAGATAAACATGCTTCCTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCACCATCTTCATCCTTTaGAAATCCATCGTGAGACCA +
Preference number: 5 (lower is better)
Translates to: GCPRSHSVDQAGPALIEITIFIL*KSIVRP
Trigger: TGGTCTCACGATGGATTTCAAAAGGATGAAGATGGT...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACAGCATACCTCGTGAGTTCCTaGTTTGGTCACCTTCACCAT +
Preference number: 5 (lower is better)
Translates to: LYWGWRYRDELKQFWSTAYLVSS*FGHLHH
Trigger: ATGGTGAAGGTGACCAAACAAGGAACTCACGAGGTA...TGCTGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp TCCCTGTACTGGGGCTGGAGGTACAGAGATGAGCTAAAGCAATTCTGGTCCACATACCTCGTGAGTTCCTaGTTTGGTCACCTTCACCAT +
Preference number: 5 (lower is better)
Translates to: SLYWGWRYRDELKQFWSTYLVSS*FGHLHH
Trigger: ATGGTGAAGGTGACCAAACAAGGAACTCACGAGGTA...TGTGGACCAGAATTGCTTTAGCTCATCTCTGTACCTCCAGCCCCAGTACAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 90 bp TCCAAATTCACGAAGGAAGCATGTTTATCTGAAATTCCCAGGCCTTaGAGGCAGATGGCGTTTGAGGCAGCTCGACCAACATCACAGGAG +
Preference number: 5 (lower is better)
Translates to: SKFTKEACLSEIPRP*RQMAFEAARPTSQE
Trigger: CTCCTGTGATGTTGGTCGAGCTGCCTCAAACGCCATCTGCCTTCAAGGCCTGGGAATTTCAGATAAACATGCTTCCTTCGTGAATTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp GCCGGTGACTGGTACCCCATTAACAATGACTTTGCACTTGCTGTGTaGTGCGACTGTCACTTTACCATCCAAATTCACGAAGGAAGCATG +
Preference number: 5 (lower is better)
Translates to: AGDWYPINNDFALAV*CDCHFTIQIHEGSM
Trigger: CATGCTTCCTTCGTGAATTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp ATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATCTACCATCTTCATCCTTTaGAAATCCATCGTGAGACCA +
Preference number: 5 (lower is better)
Translates to: ILVHSKSLLEKRHVVHASTIFIL*KSIVRP
Trigger: TGGTCTCACGATGGATTTCAAAAGGATGAAGATGGT...AGATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACACTGGAAAATGTCTaGGTGTCTACCATGATGTGG +
Preference number: 5 (lower is better)
Translates to: LKQFWSTASPCWKRGTWSTLENV*VSTMMW
Trigger: CCACATCATGGTAGACACCAAGACATTTTCCAGTGT...GGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GGCTGTCCTAGAAGTCACTCTGTAGACCAGGCTGGCCCTGCACTCATAGAGATCTTCCTATTGATGAACTaGGCTTTTGACCAAATCCAT +
Preference number: 5 (lower is better)
Translates to: GCPRSHSVDQAGPALIEIFLLMN*AFDQIH
Trigger: ATGGATTTGGTCAAAAGCCAAGTTCATCAATAGGAA...GATCTCTATGAGTGCAGGGCCAGCCTGGTCTACAGAGTGACTTCTAGGACAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCACGCATTTCCTATTGATGAACTaGGCTTTTGACCAAATCCAT +
Preference number: 5 (lower is better)
Translates to: QFWSTASPCWKRGTWSTHFLLMN*AFDQIH
Trigger: ATGGATTTGGTCAAAAGCCAAGTTCATCAATAGGAA...ATGCGTGGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp CTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTGGTCCTTTTCCAGTGAAGCCTaGAGAAACACATTTTCACCT +
Preference number: 5 (lower is better)
Translates to: LKQFWSTASPCWKRGTWSFSSEA*RNTFSP
Trigger: AGGTGAAAATGTGTTTCTCAAGGCTTCACTGGAAAA...GGACCACGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 90 bp GGTGACTGGTACCCCATTAACAATGACTTTGCACTTGCTGTGTGGTaGGACTGTCACTTTACCATCCAAATTCACGAAGGAAGCATGTTT +
Preference number: 5 (lower is better)
Translates to: GDWYPINNDFALAVW*DCHFTIQIHEGSMF
Trigger: AAACATGCTTCCTTCGTGAATTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS-3UTR CAA 90 bp GATGAGCTAAAGCAATTCTGGTCCACAGCAAGTCCTTGCTGGAAAAGAGGCACGTTTTCCAGTGAAGCCTaGAGAAACACATTTTCACCT +
Preference number: 5 (lower is better)
Translates to: DELKQFWSTASPCWKRGTFSSEA*RNTFSP
Trigger: AGGTGAAAATGTGTTTCTCAAGGCTTCACTGGAAAA...CGTGCCTCTTTTCCAGCAAGGACTTGCTGTGGACCAGAATTGCTTTAGCTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CCA 90 bp ATGGAAGACATCGCTCTGGCCTGCAAATTTACTAGCTGGATCAGATaGAATAAGGACACCATCTTCATCCTTTTGAAATCCATCGTGAGA +
Preference number: 5 (lower is better)
Translates to: MEDIALACKFTSWIR*NKDTIFILLKSIVR
Trigger: TCTCACGATGGATTTCAAAAGGATGAAGATGGTGTCCTTATTCCATCTGATCCAGCTAGTAAATTTGCAGGCCAGAGCGATGTCTTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp TCCGATATCATGGAAGACATCGCTCTGGCCTGCAAATTTACTAGCTaGATCAGATGGAATAAGGACACCATCTTCATCCTTTTGAAATCC +
Preference number: 5 (lower is better)
Translates to: SDIMEDIALACKFTS*IRWNKDTIFILLKS
Trigger: GGATTTCAAAAGGATGAAGATGGTGTCCTTATTCCATCTGATCCAGCTAGTAAATTTGCAGGCCAGAGCGATGTCTTCCATGATATCGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp TTCCTTTTGCTTCTCAATAGCTTGGAAGAGCTCTTCACACACTCTTaGAATAAGACCCTTGTTTGTGCCAAAGCCAATCATGGAGTAGCT +
Preference number: 5 (lower is better)
Translates to: FLLLLNSLEELFTHS*NKTLVCAKANHGVA
Trigger: AGCTACTCCATGATTGGCTTTGGCACAAACAAGGGTCTTATTCCAAGAGTGTGTGAAGAGCTCTTCCAAGCTATTGAGAAGCAAAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 90 bp GGACAGTCTCTTCAATTCTGGGATTCACACTTTTCCATACAGGTTTaGTGTACAAAGTATTTGGAAGATCATAAATCTTGTACCCCATCT +
Preference number: 5 (lower is better)
Translates to: GQSLQFWDSHFSIQV*CTKYLEDHKSCTPS
Trigger: AGATGGGGTACAAGATTTATGATCTTCCAAATACTTTGTACACCAAACCTGTATGGAAAAGTGTGAATCCCAGAATTGAAGAGACTGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
ENSMUST00000223392.2
CDS GCA 72 bp GCCTGCTGCTCCAGCGCCCCTGAATCCAAGCAGCAGTaGGTTCTCGGCCCTGGAAGCTCTCGCCAGTGGACA +
Preference number: 6 (lower is better)
Translates to: ACCSSAPESKQQ*VLGPGSSRQWT
Trigger: TGTCCACTGGCGAGAGCTTCCAGGGCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS GCA 72 bp CTCTGCTGCTCCAGCGCCCCTGAATCCAAGCAGCAGTaGGTTCTCGGCCCTGGAAGCTCTCGCCAGTGGACA +
Preference number: 6 (lower is better)
Translates to: LCCSSAPESKQQ*VLGPGSSRQWT
Trigger: TGTCCACTGGCGAGAGCTTCCAGGGCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 72 bp GACCAACATCACAGGAGCCTGCTGCTCCAGCGCCCCTaGATCCAAGCAGCAGTGCGTTCTCGGCCCTGGAAG +
Preference number: 6 (lower is better)
Translates to: DQHHRSLLLQRP*IQAAVRSRPWK
Trigger: CTTCCAGGGCCGAGAACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGGCTCCTGTGATGTTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS GCA 72 bp CAGCTGCTGTTCTGCCCAGAAACAGGCTGGGTGCTCTaGTGCTCCAGCGCCCCTGAATCCAAGCAGCAGTGC +
Preference number: 6 (lower is better)
Translates to: QLLFCPETGWVL*CSSAPESKQQC
Trigger: GCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCAGAACAGCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 72 bp CTAAGATGCTGGGGTCAGCTTGGTCATCTCCAGGGCTaGCACAACCAAGCGTGGCCACACTCACGCCCTCGG +
Preference number: 6 (lower is better)
Translates to: LRCWGQLGHLQG*HNQAWPHSRPR
Trigger: CCGAGGGCGTGAGTGTGGCCACGCTTGGTTGTGTCAGCCCTGGAGATGACCAAGCTGACCCCAGCATCTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp CCTCACCATGTGCCCATCCTTCCGGGGAGCAGGGTGTaGTTCGAATGTGTAGCACTGCCTCCTCCAGCCCGT +
Preference number: 6 (lower is better)
Translates to: PHHVPILPGSRV*FECVALPPPAR
Trigger: ACGGGCTGGAGGAGGCAGTGCTACACATTCGAATCACACCCTGCTCCCCGGAAGGATGGGCACATGGTGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp AAGGCTCTGGCCAGCTGGGCATCGGAGCTGGCCTGCTaGGCACACACTTGCTTAGCCTCTCTAGCAGCTGTC +
Preference number: 6 (lower is better)
Translates to: KALASWASELAC*AHTCLASLAAV
Trigger: GACAGCTGCTAGAGAGGCTAAGCAAGTGTGTGCTCAGCAGGCCAGCTCCGATGCCCAGCTGGCCAGAGCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp CTGCTGTTCTGCCCAGAAACAGGCTGGGTGCTCTGCTaGTCCAGCGCCCCTGAATCCAAGCAGCAGTGCGTT +
Preference number: 6 (lower is better)
Translates to: LLFCPETGWVLC*SSAPESKQQCV
Trigger: AACGCACTGCTGCTTGGATTCAGGGGCGCTGGAGCAGCAGAGCACCCAGCCTGTTTCTGGGCAGAACAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 72 bp CTTACCATCTTCTGCTCCTGTGTGAGTGCCTCGTACTaGTCCTCCCACTCCCTCCGTGCCTGCTCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: LTIFCSCVSASY*SSHSLRACSSS
Trigger: GCTGCTGGAGCAGGCACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAGAAGATGGTAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS GCA 72 bp CGGGAGAATCCTTACCATCTTCTGCTCCTGTGTGAGTaGCTCGTACTGCTCCTCCCACTCCCTCCGTGCCTG +
Preference number: 6 (lower is better)
Translates to: RENPYHLLLLCE*LVLLLPLPPCL
Trigger: CAGGCACGGAGGGAGTGGGAGGAGCAGTACGAGGCACTCACACAGGAGCAGAAGATGGTAAGGATTCTCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CAA 72 bp ATCCAGCTGAGAGACGCCCAAGGGGGCACAGCCTTCTaGGAGGCCCCACAGATCGACAATGAGGGCATTGGT +
Preference number: 6 (lower is better)
Translates to: IQLRDAQGGTAF*EAPQIDNEGIG
Trigger: ACCAATGCCCTCATTGTCGATCTGTGGGGCCTCCAAGAAGGCTGTGCCCCCTTGGGCGTCTCTCAGCTGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
ENSMUST00000223392.2
CDS CAA 72 bp CAGCTGGGCATCGGAGCTGGCCTGCTGAGCACACACTaGCTTAGCCTCTCTAGCAGCTGTCCTTGTAGCTCC +
Preference number: 6 (lower is better)
Translates to: QLGIGAGLLSTH*LSLSSSCPCSS
Trigger: GGAGCTACAAGGACAGCTGCTAGAGAGGCTAAGCAAGTGTGTGCTCAGCAGGCCAGCTCCGATGCCCAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 90 bp GGCTCTGGCCAGCTGGGCATCGGAGCTGGCCTGCTGAGCACACACTaGCTTAGCCTCTCTAGCAGCTGTCCTTGTAGCTCCTTCTGGATT +
Preference number: 6 (lower is better)
Translates to: GSGQLGIGAGLLSTH*LSLSSSCPCSSFWI
Trigger: AATCCAGAAGGAGCTACAAGGACAGCTGCTAGAGAGGCTAAGCAAGTGTGTGCTCAGCAGGCCAGCTCCGATGCCCAGCTGGCCAGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp TCACACACTGGCTTCCAGAGTTCTTTTCTCTCTGGCTaGACGGCCGCACCCGGACGGCCACTCTCACACTGT +
Preference number: 6 (lower is better)
Translates to: SHTGFQSSFLSG*TAAPGRPLSHC
Trigger: ACAGTGTGAGAGTGGCCGTCCGGGTGCGGCCGTTCAGCCAGAGAGAAAAGAACTCTGGAAGCCAGTGTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp AAGGCACTGTTGGACCCCAGGATGATGCGGTCCAAATaGTGCAGCTTTGTCCTGCCGGTGACTGGTACCCCA +
Preference number: 6 (lower is better)
Translates to: KALLDPRMMRSK*CSFVLPVTGTP
Trigger: TGGGGTACCAGTCACCGGCAGGACAAAGCTGCAGCATTTGGACCGCATCATCCTGGGGTCCAACAGTGCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp GAGATCACACACTGGCTTCCAGAGTTCTTTTCTCTCTaGCTGAACGGCCGCACCCGGACGGCCACTCTCACA +
Preference number: 6 (lower is better)
Translates to: EITHWLPEFFSL*LNGRTRTATLT
Trigger: TGTGAGAGTGGCCGTCCGGGTGCGGCCGTTCAGCCAGAGAGAAAAGAACTCTGGAAGCCAGTGTGTGATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp ATCCGACATAGAGGAAGGCACTGTTGGACCCCAGGATaGTGCGGTCCAAATGCTGCAGCTTTGTCCTGCCGG +
Preference number: 6 (lower is better)
Translates to: IRHRGRHCWTPG*CGPNAAALSCR
Trigger: CCGGCAGGACAAAGCTGCAGCATTTGGACCGCATCATCCTGGGGTCCAACAGTGCCTTCCTCTATGTCGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp GCACTGTTGGACCCCAGGATGATGCGGTCCAAATGCTaGAGCTTTGTCCTGCCGGTGACTGGTACCCCATTA +
Preference number: 6 (lower is better)
Translates to: ALLDPRMMRSKC*SFVLPVTGTPL
Trigger: TAATGGGGTACCAGTCACCGGCAGGACAAAGCTGCAGCATTTGGACCGCATCATCCTGGGGTCCAACAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp CAGCCCGCTCCAGCTGGAAAAAGTCGTAGTCGAATCTaGTCAGGTCTTCAGCACCTCGCTCGGAGGGAAATC +
Preference number: 6 (lower is better)
Translates to: QPAPAGKSRSRI*SGLQHLARREI
Trigger: GATTTCCCTCCGAGCGAGGTGCTGAAGACCTGAGCAGATTCGACTACGACTTTTTCCAGCTGGAGCGGGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp GCTGTCCTTGTAGCTCCTTCTGGATTATCCAGCTTCTaGGCTTGGAGGCCCCACAGATCGACAATGAGGGCA +
Preference number: 6 (lower is better)
Translates to: AVLVAPSGLSSF*AWRPHRSTMRA
Trigger: TGCCCTCATTGTCGATCTGTGGGGCCTCCAAGCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAGGACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS CCA 72 bp CTTAGCCTCTCTAGCAGCTGTCCTTGTAGCTCCTTCTaGATTATCCAGCTTCTGGGCTTGGAGGCCCCACAG +
Preference number: 6 (lower is better)
Translates to: LSLSSSCPCSSF*IIQLLGLEAPQ
Trigger: CTGTGGGGCCTCCAAGCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAGGACAGCTGCTAGAGAGGCTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS CAA 90 bp TGGATGGCGATTAGCATGTGGGATCGGCTGCTGCTGGCGTTCATGTaGGTGGACGCTGTCATCCTGATTTTTGATCCTTGCTCCACCAGC +
Preference number: 6 (lower is better)
Translates to: WMAISMWDRLLLAFM*VDAVILIFDPCSTS
Trigger: GCTGGTGGAGCAAGGATCAAAAATCAGGATGACAGCGTCCACCAACATGAACGCCAGCAGCAGCCGATCCCACATGCTAATCGCCATCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp TGCAATCAGTGTTGTCCGGCTGTTTCCGCCCAGGGCTaGCTGGAGCAGTTTGGTCAGAACAGAATCCCTGTA +
Preference number: 6 (lower is better)
Translates to: CNQCCPAVSAQG*LEQFGQNRIPV
Trigger: TACAGGGATTCTGTTCTGACCAAACTGCTCCAGTCAGCCCTGGGCGGAAACAGCCGGACAACACTGATTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp ACAACCTCCAGGGGATCCCAGAAAGGGTCATCTTCCTaGGCTACGTGGCTGTCTCTGCTCTCTAGAAAACGC +
Preference number: 6 (lower is better)
Translates to: TTSRGSQKGSSS*ATWLSLLSRKR
Trigger: GCGTTTTCTAGAGAGCAGAGACAGCCACGTAGCTCAGGAAGATGACCCTTTCTGGGATCCCCTGGAGGTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp CTGGACCGTTTGGTGAGAGCTGTGTCCAGGAAAACCTaGTTGAACTGGATGGCGATTAGCATGTGGGATCGG +
Preference number: 6 (lower is better)
Translates to: LDRLVRAVSRKT*LNWMAISMWDR
Trigger: CCGATCCCACATGCTAATCGCCATCCAGTTCAAGCAGGTTTTCCTGGACACAGCTCTCACCAAACGGTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp CTCCAGAGGGTCAATAACCATGTCTTCCTCACCATGTaGCCATCCTTCCGGGGAGCAGGGTGTGATTCGAAT +
Preference number: 6 (lower is better)
Translates to: LQRVNNHVFLTM*PSFRGAGCDSN
Trigger: ATTCGAATCACACCCTGCTCCCCGGAAGGATGGGCACATGGTGAGGAAGACATGGTTATTGACCCTCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp CTTAGCCTCTCTAGCAGCTGTCCTTGTAGCTCCTTCTaGATTATCCAGCTTCTGGGCCTGTGGAGCAGAACC +
Preference number: 6 (lower is better)
Translates to: LSLSSSCPCSSF*IIQLLGLWSRT
Trigger: GGTTCTGCTCCACAGGCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAGGACAGCTGCTAGAGAGGCTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000223392.2
CDS CCA 72 bp CTTGTAGCTCCTTCTGGATTATCCAGCTTCTGGGCTTaGAGGCCCCACAGATCGACAATGAGGGCATTGGTC +
Preference number: 6 (lower is better)
Translates to: LVAPSGLSSFWA*RPHRSTMRALV
Trigger: GACCAATGCCCTCATTGTCGATCTGTGGGGCCTCCAAGCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS CAA 72 bp CTTCCCGCCAAGTCCACCATGTTGATGCTGGACCGTTaGGTGAGAGCTGTGTCCAGGAAAACCTGCTTGAAC +
Preference number: 6 (lower is better)
Translates to: LPAKSTMLMLDR*VRAVSRKTCLN
Trigger: GTTCAAGCAGGTTTTCCTGGACACAGCTCTCACCAAACGGTCCAGCATCAACATGGTGGACTTGGCGGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 72 bp CCTTGTAGCTCCTTCTGGATTATCCAGCTTCTGGGCTaGGAGGCCCCACAGATCGACAATGAGGGCATTGGT +
Preference number: 6 (lower is better)
Translates to: PCSSFWIIQLLG*EAPQIDNEGIG
Trigger: ACCAATGCCCTCATTGTCGATCTGTGGGGCCTCCAAGCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS TCA 72 bp TCCTTTAGCCATTTGACACCAAGGCACCGGACGATGTaGGTCTGGAAGTCAATCCTCTTGCCCAACAGCTCC +
Preference number: 6 (lower is better)
Translates to: SFSHLTPRHRTM*VWKSILLPNSS
Trigger: GGAGCTGTTGGGCAAGAGGATTGACTTCCAGACTCACATCGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp TCTGAATGCCCCGGCTTCCATCTTCCTTTAGCCATTTaGCACCAAGGCACCGGACGATGTGAGTCTGGAAGT +
Preference number: 6 (lower is better)
Translates to: SECPGFHLPLAI*HQGTGRCESGS
Trigger: ACTTCCAGACTCACATCGTCCGGTGCCTTGGTGTCAAATGGCTAAAGGAAGATGGAAGCCGGGGCATTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp CCAGCTTCTGGGCTTGGAGGCCCCACAGATCGACAATaGGGGCATTGGTCAGTAAGTAATCCAGAAACTCTC +
Preference number: 6 (lower is better)
Translates to: PASGLGGPTDRQ*GHWSVSNPETL
Trigger: GAGAGTTTCTGGATTACTTACTGACCAATGCCCTCATTGTCGATCTGTGGGGCCTCCAAGCCCAGAAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211943.3
CDS CCA 72 bp GCGGTCCAAATGCTGCAGCTTTGTCCTGCCGGTGACTaGTACCCCATTAACAATGACTTTGCACTTGCTGTG +
Preference number: 6 (lower is better)
Translates to: AVQMLQLCPAGD*YPINNDFALAV
Trigger: CACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGGCAGGACAAAGCTGCAGCATTTGGACCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp GCTGTCCTTGTAGCTCCTTCTGGATTATCCAGCTTCTaGGCCTGTGGAGCAGAACCAGCGTTTTCCAGTGAA +
Preference number: 6 (lower is better)
Translates to: AVLVAPSGLSSF*ACGAEPAFSSE
Trigger: TTCACTGGAAAACGCTGGTTCTGCTCCACAGGCCCAGAAGCTGGATAATCCAGAAGGAGCTACAAGGACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000223392.2
CDS CCA 72 bp CTTAGCCTCTCTAGCAGCTGTCCTTGTAGCTCCTTCTaGATTATCCAGCTTACGGTACCGTCTCTCACCCTG +
Preference number: 6 (lower is better)
Translates to: LSLSSSCPCSSF*IIQLTVPSLTL
Trigger: CAGGGTGAGAGACGGTACCGTAAGCTGGATAATCCAGAAGGAGCTACAAGGACAGCTGCTAGAGAGGCTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221136.2
CDS CAA 90 bp TCGGCCAGAGCACTGATGACGTTCCCTAAACTGGTTAGGCTTAAATaGACCCTTGATCCTTCCCTCAGACGGTCTCCTTCAGACCCTGAT +
Preference number: 6 (lower is better)
Translates to: SARALMTFPKLVRLK*TLDPSLRRSPSDPD
Trigger: ATCAGGGTCTGAAGGAGACCGTCTGAGGGAAGGATCAAGGGTCAATTTAAGCCTAACCAGTTTAGGGAACGTCATCAGTGCTCTGGCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 72 bp GTCCTGCCGGTGACTGGTACCCCATTAACAATGACTTaGCACTTGCTGTGTGGTGCGACTGTCACTTTACCA +
Preference number: 6 (lower is better)
Translates to: VLPVTGTPLTMT*HLLCGATVTLP
Trigger: TGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGGCAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 90 bp TCTGGCACCTGGTTTGACGTGATATCCTTCACACTGGAAAATGTCTaGGTGTCTACCATGATGTGGCCTTCACCTGTGAGCAGGACATCC +
Preference number: 6 (lower is better)
Translates to: SGTWFDVISFTLENV*VSTMMWPSPVSRTS
Trigger: GGATGTCCTGCTCACAGGTGAAGGCCACATCATGGTAGACACCAAGACATTTTCCAGTGTGAAGGATATCACGTCAAACCAGGTGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CAA 90 bp TGGTTTGACGTGATCTGGCTCACATCCTTCACACTGGAAAATGTCTaGGTGTCTACCATGATGTGGCCTTCACCTGTGAGCAGGACATCC +
Preference number: 6 (lower is better)
Translates to: WFDVIWLTSFTLENV*VSTMMWPSPVSRTS
Trigger: GGATGTCCTGCTCACAGGTGAAGGCCACATCATGGTAGACACCAAGACATTTTCCAGTGTGAAGGATGTGAGCCAGATCACGTCAAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223392.2
CDS TCA 72 bp ACGAAGGAAGCATGTTTATCTGAAATTCCCAGGCCTTaGAGGCAGATGGCGTTTGAGGCAGCTCGACCAACA +
Preference number: 6 (lower is better)
Translates to: TKEACLSEIPRP*RQMAFEAARPT
Trigger: TGTTGGTCGAGCTGCCTCAAACGCCATCTGCCTTCAAGGCCTGGGAATTTCAGATAAACATGCTTCCTTCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp ATGCTGATGTTTCCGGAATGCATGGAGATCACACACTaGCTTCCAGAGTTCTTTTCTCTCTGGCTGAACGGC +
Preference number: 6 (lower is better)
Translates to: MLMFPECMEITH*LPEFFSLWLNG
Trigger: GCCGTTCAGCCAGAGAGAAAAGAACTCTGGAAGCCAGTGTGTGATCTCCATGCATTCCGGAAACATCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp CGCCAGGCACTGTCTAGAATTCCCCTTCCGATATCATaGAAGACATCGCTCTGGCCTGCAAATTTACTAGCT +
Preference number: 6 (lower is better)
Translates to: RQALSRIPLPIS*KTSLWPANLLA
Trigger: AGCTAGTAAATTTGCAGGCCAGAGCGATGTCTTCCATGATATCGGAAGGGGAATTCTAGACAGTGCCTGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp ATTGTGAATGAAGAACTTGAGGACCCCCGTGAGCTGTaGGTCTTCATTGACATTGAGGAGGTGCGGGAGAAT +
Preference number: 6 (lower is better)
Translates to: IVNEELEDPREL*VFIDIEEVREN
Trigger: ATTCTCCCGCACCTCCTCAATGTCAATGAAGACCCACAGCTCACGGGGGTCCTCAAGTTCTTCATTCACAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CAA 72 bp GTGATCTGGCTCACATCCTTCACACTGGAAAATGTCTaGGTGTCTACCATGATGTGGCCTTCACCTGTGAGC +
Preference number: 6 (lower is better)
Translates to: VIWLTSFTLENV*VSTMMWPSPVS
Trigger: GCTCACAGGTGAAGGCCACATCATGGTAGACACCAAGACATTTTCCAGTGTGAAGGATGTGAGCCAGATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223392.2
CDS CAA 90 bp TGCAGCTTTGTCCTGCCGGTGACTGGTACCCCATTAACAATGACTTaGCACTTGCTGTGTGGTGCGACTGTCACTTTACCATCCAAATTC +
Preference number: 6 (lower is better)
Translates to: CSFVLPVTGTPLTMT*HLLCGATVTLPSKF
Trigger: GAATTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGGCAGGACAAAGCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp TCCATTGTAAGCCCCTTCTTCAACTCTTCGCTCATCTaGTTGGCTTCAACAACCAGCGGCATGAGTTTGACG +
Preference number: 6 (lower is better)
Translates to: SIVSPFFNSSLI*LASTTSGMSLT
Trigger: CGTCAAACTCATGCCGCTGGTTGTTGAAGCCAATCAGATGAGCGAAGAGTTGAAGAAGGGGCTTACAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp TCGTTCTTAGGGTCTCGGATGCTGATGTTTCCGGAATaGATGGAGATCACACACTGGCTTCCAGAGTTCTTT +
Preference number: 6 (lower is better)
Translates to: SFLGSRMLMFPE*MEITHWLPEFF
Trigger: AAAGAACTCTGGAAGCCAGTGTGTGATCTCCATGCATTCCGGAAACATCAGCATCCGAGACCCTAAGAACGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 72 bp GCACTGATGACGTTCCCTAAACTGGTTAGGCTTAAATaGACCCTTGATCCTTCCCTCAGACGGTCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: ALMTFPKLVRLK*TLDPSLRRSPS
Trigger: TGAAGGAGACCGTCTGAGGGAAGGATCAAGGGTCAATTTAAGCCTAACCAGTTTAGGGAACGTCATCAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 72 bp CCGGTGACTGGTACCCCATTAACAATGACTTTGCACTaGCTGTGTGGTGCGACTGTCACTTTACCATCCAAA +
Preference number: 6 (lower is better)
Translates to: PVTGTPLTMTLH*LCGATVTLPSK
Trigger: TTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 90 bp TTTGTCCTGCCGGTGACTGGTACCCCATTAACAATGACTTTGCACTaGCTGTGTGGTGCGACTGTCACTTTACCATCCAAATTCACGAAG +
Preference number: 6 (lower is better)
Translates to: FVLPVTGTPLTMTLH*LCGATVTLPSKFTK
Trigger: CTTCGTGAATTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCAGTCACCGGCAGGACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp TGCTGCTGGCGTTCATGTTGGTGGACGCTGTCATCCTaGTTTTTGATCCTTGCTCCACCAGCTTTTCAATTT +
Preference number: 6 (lower is better)
Translates to: CCWRSCWWTLSS*FLILAPPAFQF
Trigger: AAATTGAAAAGCTGGTGGAGCAAGGATCAAAAATCAGGATGACAGCGTCCACCAACATGAACGCCAGCAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 72 bp TGGTTTGACGTGATATCCTTCACACTGGAAAATGTCTaGGTGTCTACCATGATGTGGCCTTCACCTGTGAGC +
Preference number: 6 (lower is better)
Translates to: WFDVISFTLENV*VSTMMWPSPVS
Trigger: GCTCACAGGTGAAGGCCACATCATGGTAGACACCAAGACATTTTCCAGTGTGAAGGATATCACGTCAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 72 bp GCAACTTCTGATAAAGCTCTGGCACCTGGTTTGACGTaGTATCCTTCACACTGGAAAATGTCTTGGTGTCTA +
Preference number: 6 (lower is better)
Translates to: ATSDKALAPGLT*YPSHWKMSWCL
Trigger: TAGACACCAAGACATTTTCCAGTGTGAAGGATATCACGTCAAACCAGGTGCCAGAGCTTTATCAGAAGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS TCA 72 bp GGCTGGGCAGTAGATACTCTTTCCTCTTCTTCACTATaGAAGCAACGTCGGCTTTTAACTTGTGTAAACTGG +
Preference number: 6 (lower is better)
Translates to: GWAVDTLSSSSL*KQRRLLTCVNW
Trigger: CCAGTTTACACAAGTTAAAAGCCGACGTTGCTTTCATAGTGAAGAAGAGGAAAGAGTATCTACTGCCCAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS GCA 72 bp TACCCCATTAACAATGACTTTGCACTTGCTGTGTGGTaGGACTGTCACTTTACCATCCAAATTCACGAAGGA +
Preference number: 6 (lower is better)
Translates to: YPINNDFALAVW*DCHFTIQIHEG
Trigger: TCCTTCGTGAATTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp ATGGAAGACATCGCTCTGGCCTGCAAATTTACTAGCTaGATCAGATGGAATAAGGACACCATCTTCATCCTT +
Preference number: 6 (lower is better)
Translates to: MEDIALACKFTS*IRWNKDTIFIL
Trigger: AAGGATGAAGATGGTGTCCTTATTCCATCTGATCCAGCTAGTAAATTTGCAGGCCAGAGCGATGTCTTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp AGAATTCCCCTTCCGATATCATGGAAGACATCGCTCTaGCCTGCAAATTTACTAGCTGGATCAGATGGAATA +
Preference number: 6 (lower is better)
Translates to: RIPLPISWKTSL*PANLLAGSDGI
Trigger: TATTCCATCTGATCCAGCTAGTAAATTTGCAGGCCAGAGCGATGTCTTCCATGATATCGGAAGGGGAATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp TGGTACCCCATTAACAATGACTTTGCACTTGCTGTGTaGTGCGACTGTCACTTTACCATCCAAATTCACGAA +
Preference number: 6 (lower is better)
Translates to: WYPINNDFALAV*CDCHFTIQIHE
Trigger: TTCGTGAATTTGGATGGTAAAGTGACAGTCGCACCACACAGCAAGTGCAAAGTCATTGTTAATGGGGTACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp TTTGAGCAACTTCTGATAAAGCTCTGGCACCTGGTTTaGCGTGATATCCTTCACACTGGAAAATGTCTTGGT +
Preference number: 6 (lower is better)
Translates to: FEQLLIKLWHLV*RDILHTGKCLG
Trigger: ACCAAGACATTTTCCAGTGTGAAGGATATCACGTCAAACCAGGTGCCAGAGCTTTATCAGAAGTTGCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000131716.4
ENSMUST00000221136.2
CDS CCA 72 bp ATCGCTCTGGCCTGCAAATTTACTAGCTGGATCAGATaGAATAAGGACACCATCTTCATCCTTTTGAAATCC +
Preference number: 6 (lower is better)
Translates to: IALACKFTSWIR*NKDTIFILLKS
Trigger: GGATTTCAAAAGGATGAAGATGGTGTCCTTATTCCATCTGATCCAGCTAGTAAATTTGCAGGCCAGAGCGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CCA 72 bp CTTCTCAATAGCTTGGAAGAGCTCTTCACACACTCTTaGAATAAGACCCTTGTTTGTGCCAAAGCCAATCAT +
Preference number: 6 (lower is better)
Translates to: LLNSLEELFTHS*NKTLVCAKANH
Trigger: ATGATTGGCTTTGGCACAAACAAGGGTCTTATTCCAAGAGTGTGTGAAGAGCTCTTCCAAGCTATTGAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 90 bp TTTACTAGCTGGATCAGATGGAATAAGGACACCATCTTCATCCTTTaGAAATCCATCGTGAGACCAATATGTCAGGTCAAAGGTAAAGGT +
Preference number: 6 (lower is better)
Translates to: FTSWIRWNKDTIFIL*KSIVRPICQVKGKG
Trigger: ACCTTTACCTTTGACCTGACATATTGGTCTCACGATGGATTTCAAAAGGATGAAGATGGTGTCCTTATTCCATCTGATCCAGCTAGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS TCA 72 bp CTCCATCAAGAATTTCCTATTGATGAACTTGGCTTTTaGCCAAATCCATACCTCGTGAGTTCCTTGTTTGGT +
Preference number: 6 (lower is better)
Translates to: LHQEFPIDELGF*PNPYLVSSLFG
Trigger: ACCAAACAAGGAACTCACGAGGTATGGATTTGGTCAAAAGCCAAGTTCATCAATAGGAAATTCTTGATGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
CDS CAA 72 bp TCACACTTTTCCATACAGGTTTGGTGTACAAAGTATTaGGAAGATCATAAATCTTGTACCCCATCTGAATGC +
Preference number: 6 (lower is better)
Translates to: SHFSIQVWCTKY*EDHKSCTPSEC
Trigger: GCATTCAGATGGGGTACAAGATTTATGATCTTCCAAATACTTTGTACACCAAACCTGTATGGAAAAGTGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
ENSMUST00000223392.2
CDS CCA 72 bp CTTCAATTCTGGGATTCACACTTTTCCATACAGGTTTaGTGTACAAAGTATTTGGAAGATCATAAATCTTGT +
Preference number: 6 (lower is better)
Translates to: LQFWDSHFSIQV*CTKYLEDHKSC
Trigger: ACAAGATTTATGATCTTCCAAATACTTTGTACACCAAACCTGTATGGAAAAGTGTGAATCCCAGAATTGAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000131716.4
ENSMUST00000211943.3
ENSMUST00000221136.2
ENSMUST00000223392.2