RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KIF22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030677

Ensembl transcript IDs: ENSMUST00000032915.8, ENSMUST00000205754.2, ENSMUST00000205806.2

Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGGCCGTGGAGCTCCCTCCAGCCCACGATGAGCTGGGCTTTCTTCTaGCCAATGCGCTGCAGGCTGCGCAGTTCCCGAGCTGAGCCTTCA +
Preference number: 5 (lower is better)
Translates to: GPWSSLQPTMSWAFF*PMRCRLRSSRAEPS
Trigger: TGAAGGCTCAGCTCGGGAACTGCGCAGCCTGCAGCGCATTGGCCAGAAGAAAGCCCAGCTCATCGTGGGCTGGAGGGAGCTCCACGGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205754.2
CDS CCA 90 bp ACCTCACTGAAGGGGCCGTGGAGCTCCCTCCAGCCCACGATGAGCTaGGCTTTCTTCTGGCCAATGCGCTGCAGGCTGCGCAGTTCCCGA +
Preference number: 5 (lower is better)
Translates to: TSLKGPWSSLQPTMS*AFFWPMRCRLRSSR
Trigger: TCGGGAACTGCGCAGCCTGCAGCGCATTGGCCAGAAGAAAGCCCAGCTCATCGTGGGCTGGAGGGAGCTCCACGGCCCCTTCAGTGAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205754.2
CDS TCA 90 bp GCCGTCCCTCAGCACTCTCTTCCCTTGCTAGTTGCAGGAGGTCCATaGGAGCCCGAGGAATCACTCCAGGTTGCTCTGGGCTGCCCAGCA +
Preference number: 5 (lower is better)
Translates to: AVPQHSLPLLVAGGP*EPEESLQVALGCPA
Trigger: TGCTGGGCAGCCCAGAGCAACCTGGAGTGATTCCTCGGGCTCTCATGGACCTCCTGCAACTAGCAAGGGAAGAGAGTGCTGAGGGACGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS CCA 90 bp CTGCTCGAAGTCAGAGAAGCTGGTGATGGGCTTCTGTGTGAGGCCTaGGATCAGGATGTTCCCTCGGCAGTCTTCGCGGATCACGAGGTC +
Preference number: 5 (lower is better)
Translates to: LLEVREAGDGLLCEA*DQDVPSAVFADHEV
Trigger: GACCTCGTGATCCGCGAAGACTGCCGAGGGAACATCCTGATCCCAGGCCTCACACAGAAGCCCATCACCAGCTTCTCTGACTTCGAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 90 bp GAAACGTCCCATGGCCGTCCCTCAGCACTCTCTTCCCTTGCTAGTTaGAGGAGGTCCATGAGAGCCCGAGGAATCACTCCAGGTTGCTCT +
Preference number: 5 (lower is better)
Translates to: ETSHGRPSALSSLAS*RRSMRARGITPGCS
Trigger: AGAGCAACCTGGAGTGATTCCTCGGGCTCTCATGGACCTCCTGCAACTAGCAAGGGAAGAGAGTGCTGAGGGACGGCCATGGGACGTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS GCA 90 bp CGGGTGGCTCCTACAGCTCGATTTCTACTGGCTGGAAGGAAGTGCTaGTCGAAGTCAGAGAAGCTGGTGATGGGCTTCTGTGTGAGGCCT +
Preference number: 5 (lower is better)
Translates to: RVAPTARFLLAGRKC*SKSEKLVMGFCVRP
Trigger: AGGCCTCACACAGAAGCCCATCACCAGCTTCTCTGACTTCGAGCAGCACTTCCTTCCAGCCAGTAGAAATCGAGCTGTAGGAGCCACCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 90 bp AGCCGGGTGGCTCCTACAGCTCGATTTCTACTGGCTGGAAGGAAGTaGTGCTCGAAGTCAGAGAAGCTGGTGATGGGCTTCTGTGTGAGG +
Preference number: 5 (lower is better)
Translates to: SRVAPTARFLLAGRK*CSKSEKLVMGFCVR
Trigger: CCTCACACAGAAGCCCATCACCAGCTTCTCTGACTTCGAGCAGCACTTCCTTCCAGCCAGTAGAAATCGAGCTGTAGGAGCCACCCGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 90 bp CTGGCGGCCAAGCTCAAGAGATTCGCCTTCAGGAAAGACTCCACCTaGTTCCCAGAGATGCCTTCCACCTGTTCCAAGTCCTCCACCTCA +
Preference number: 5 (lower is better)
Translates to: LAAKLKRFAFRKDST*FPEMPSTCSKSSTS
Trigger: TGAGGTGGAGGACTTGGAACAGGTGGAAGGCATCTCTGGGAAGCAGGTGGAGTCTTTCCTGAAGGCGAATCTCTTGAGCTTGGCCGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 90 bp GCGCTGGTTAAGCCGGGTGGCTCCTACAGCTCGATTTCTACTGGCTaGAAGGAAGTGCTGCTCGAAGTCAGAGAAGCTGGTGATGGGCTT +
Preference number: 5 (lower is better)
Translates to: ALVKPGGSYSSISTG*KEVLLEVREAGDGL
Trigger: AAGCCCATCACCAGCTTCTCTGACTTCGAGCAGCACTTCCTTCCAGCCAGTAGAAATCGAGCTGTAGGAGCCACCCGGCTTAACCAGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 90 bp GCTTTGCCACTGTGCCACTATAAGAGGCAGGCGGCTGGAGAATTGTaGGAGTGTTCTCTTTTTCCCTTGGATCCGGTGCCTCCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: ALPLCHYKRQAAGEL*ECSLFPLDPVPPGP
Trigger: TGGCCCAGGAGGCACCGGATCCAAGGGAAAAAGAGAACACTCCCACAATTCTCCAGCCGCCTGCCTCTTATAGTGGCACAGTGGCAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 90 bp AGACGAGTGAGCTTGCTGTCCCGGTATGGTATGCGAGGGAGGCCCTaGTTTAATGCATCCACCACTTTGCCCAGTACAAAGAGGGAGGTG +
Preference number: 5 (lower is better)
Translates to: RRVSLLSRYGMRGRP*FNASTTLPSTKREV
Trigger: CACCTCCCTCTTTGTACTGGGCAAAGTGGTGGATGCATTAAACCAGGGCCTCCCTCGCATACCATACCGGGACAGCAAGCTCACTCGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS TCA 90 bp CTCTTTGAGCCGAATGCCCTGGTTGCCTGTGCGACGGTTGTCCTCTaGACCAGCCAAATCAATAAGGTAGAGTTTTCCTTCCCGCTGGCG +
Preference number: 5 (lower is better)
Translates to: LFEPNALVACATVVL*TSQINKVEFSFPLA
Trigger: CGCCAGCGGGAAGGAAAACTCTACCTTATTGATTTGGCTGGTTCAGAGGACAACCGTCGCACAGGCAACCAGGGCATTCGGCTCAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 90 bp AAATGGAGTCAAACGTTCACGCTGATCTACCTTGACCAAGAGCACTaGGTGACTACGGGAAGAGCGCTGGTTAAGCCGGGTGGCTCCTAC +
Preference number: 5 (lower is better)
Translates to: KWSQTFTLIYLDQEH*VTTGRALVKPGGSY
Trigger: GTAGGAGCCACCCGGCTTAACCAGCGCTCTTCCCGTAGTCACGCAGTGCTCTTGGTCAAGGTAGATCAGCGTGAACGTTTGACTCCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 90 bp TGCAGAAAGGGCAAAGGTGGCCTTACCTTCAGGAAAGACTCCACCTaGTTCCCAGAGATGCCTTCCACCTGTTCCAAGTCCTCCACCTCA +
Preference number: 5 (lower is better)
Translates to: CRKGKGGLTFRKDST*FPEMPSTCSKSSTS
Trigger: TGAGGTGGAGGACTTGGAACAGGTGGAAGGCATCTCTGGGAAGCAGGTGGAGTCTTTCCTGAAGGTAAGGCCACCTTTGCCCTTTCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205754.2
CDS CCA 90 bp AAGAGGGAGGTGTTGATGGCTCCGCTCTCTTTGAGCCGAATGCCCTaGTTGCCTGTGCGACGGTTGTCCTCTGAACCAGCCAAATCAATA +
Preference number: 5 (lower is better)
Translates to: KREVLMAPLSLSRMP*LPVRRLSSEPAKSI
Trigger: TATTGATTTGGCTGGTTCAGAGGACAACCGTCGCACAGGCAACCAGGGCATTCGGCTCAAAGAGAGCGGAGCCATCAACACCTCCCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 90 bp AGGCAAGTACACTGGCATTCTGCCCTTCCAGCAAGTGCCTTAGGATaGGCTGTACTGAACCTACATAGACTTCCTGCTGAGTGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: RQVHWHSALPASALG*AVLNLHRLPAECSS
Trigger: AGAAGAGCACTCAGCAGGAAGTCTATGTAGGTTCAGTACAGCCCATCCTAAGGCACTTGCTGGAAGGGCAGAATGCCAGTGTACTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS GCA 90 bp AACGTTCCATACTCAGGAGGTTCTCCAACATGGCTGGATCCATATTaGTTAGCTTCTGTAAGAGGCTTAGTTTCTGGGAGGCAGACGCTG +
Preference number: 5 (lower is better)
Translates to: NVPYSGGSPTWLDPY*LASVRGLVSGRQTL
Trigger: CAGCGTCTGCCTCCCAGAAACTAAGCCTCTTACAGAAGCTAAGCAATATGGATCCAGCCATGTTGGAGAACCTCCTGAGTATGGAACGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 90 bp ACCAGCCAAATCAATAAGGTAGAGTTTTCCTTCCCGCTGGCGAAATaGAGTCAAACGTTCACGCTGATCTACCTTGACCAAGAGCACTGC +
Preference number: 5 (lower is better)
Translates to: TSQINKVEFSFPLAK*SQTFTLIYLDQEHC
Trigger: GCAGTGCTCTTGGTCAAGGTAGATCAGCGTGAACGTTTGACTCCATTTCGCCAGCGGGAAGGAAAACTCTACCTTATTGATTTGGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 90 bp CCTGGGAACCCAGCAAACGTTCCATACTCAGGAGGTTCTCCAACATaGCTGGATCCATATTGCTTAGCTTCTGTAAGAGGCTTAGTTTCT +
Preference number: 5 (lower is better)
Translates to: PGNPANVPYSGGSPT*LDPYCLASVRGLVS
Trigger: AGAAACTAAGCCTCTTACAGAAGCTAAGCAATATGGATCCAGCCATGTTGGAGAACCTCCTGAGTATGGAACGTTTGCTGGGTTCCCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS TCA 90 bp AGGCCGGTTAATCACCTCCTTGGACCTAGCAGTGAAGTTCAATGCTaGAATTGTATCCTGGTAAAAACGTCTTTCAGGAGCAATGTTGGC +
Preference number: 5 (lower is better)
Translates to: RPVNHLLGPSSEVQC*NCILVKTSFRSNVG
Trigger: GCCAACATTGCTCCTGAAAGACGTTTTTACCAGGATACAATTTCAGCATTGAACTTCACTGCTAGGTCCAAGGAGGTGATTAACCGGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 90 bp GCCACCCTTACTCGAGCTAGAGGCGGACGCCGGCCAAGCCCTCCTTaGCTTACACAGCGGCCAGGTCCTGAGGTGGCCGACGCCATCTCC +
Preference number: 6 (lower is better)
Translates to: ATLTRARGGRRPSPP*LTQRPGPEVADAIS
Trigger: GGAGATGGCGTCGGCCACCTCAGGACCTGGCCGCTGTGTAAGCAAAGGAGGGCTTGGCCGGCGTCCGCCTCTAGCTCGAGTAAGGGTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 72 bp AAGGGGCCGTGGAGCTCCCTCCAGCCCACGATGAGCTaGGCTTTCTTCTGGCCAATGCGCTGCAGGCTGCGC +
Preference number: 6 (lower is better)
Translates to: KGPWSSLQPTMS*AFFWPMRCRLR
Trigger: GCGCAGCCTGCAGCGCATTGGCCAGAAGAAAGCCCAGCTCATCGTGGGCTGGAGGGAGCTCCACGGCCCCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205754.2
CDS CCA 72 bp AGCTCCCTCCAGCCCACGATGAGCTGGGCTTTCTTCTaGCCAATGCGCTGCAGGCTGCGCAGTTCCCGAGCT +
Preference number: 6 (lower is better)
Translates to: SSLQPTMSWAFF*PMRCRLRSSRA
Trigger: AGCTCGGGAACTGCGCAGCCTGCAGCGCATTGGCCAGAAGAAAGCCCAGCTCATCGTGGGCTGGAGGGAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205754.2
CDS CCA 72 bp GTGTTGATGGCTCCGCTCTCTTTGAGCCGAATGCCCTaGTTGCCTGTGCGACGGTTGTCCTCTGAACCAGCC +
Preference number: 6 (lower is better)
Translates to: VLMAPLSLSRMP*LPVRRLSSEPA
Trigger: GGCTGGTTCAGAGGACAACCGTCGCACAGGCAACCAGGGCATTCGGCTCAAAGAGAGCGGAGCCATCAACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 90 bp GGGGCTTTGCCACTGTGCCACTATAAGAGGCAGGCGGCTGGAGAATaGTGGGAGTGTTCTCTTTTTCCCTTGGATCCGGTGCCTCCTGGG +
Preference number: 6 (lower is better)
Translates to: GALPLCHYKRQAAGE*WECSLFPLDPVPPG
Trigger: CCCAGGAGGCACCGGATCCAAGGGAAAAAGAGAACACTCCCACAATTCTCCAGCCGCCTGCCTCTTATAGTGGCACAGTGGCAAAGCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS TCA 72 bp CAGCACTCTCTTCCCTTGCTAGTTGCAGGAGGTCCATaGGAGCCCGAGGAATCACTCCAGGTTGCTCTGGGC +
Preference number: 6 (lower is better)
Translates to: QHSLPLLVAGGP*EPEESLQVALG
Trigger: GCCCAGAGCAACCTGGAGTGATTCCTCGGGCTCTCATGGACCTCCTGCAACTAGCAAGGGAAGAGAGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS GCA 72 bp CATGGCCGTCCCTCAGCACTCTCTTCCCTTGCTAGTTaGAGGAGGTCCATGAGAGCCCGAGGAATCACTCCA +
Preference number: 6 (lower is better)
Translates to: HGRPSALSSLAS*RRSMRARGITP
Trigger: TGGAGTGATTCCTCGGGCTCTCATGGACCTCCTGCAACTAGCAAGGGAAGAGAGTGCTGAGGGACGGCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS CAA 72 bp TTGATGGCTCCGCTCTCTTTGAGCCGAATGCCCTGGTaGCCTGTGCGACGGTTGTCCTCTGAACCAGCCAAA +
Preference number: 6 (lower is better)
Translates to: LMAPLSLSRMPW*PVRRLSSEPAK
Trigger: TTTGGCTGGTTCAGAGGACAACCGTCGCACAGGCAACCAGGGCATTCGGCTCAAAGAGAGCGGAGCCATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 72 bp GCATCCACCACTTTGCCCAGTACAAAGAGGGAGGTGTaGATGGCTCCGCTCTCTTTGAGCCGAATGCCCTGG +
Preference number: 6 (lower is better)
Translates to: ASTTLPSTKREV*MAPLSLSRMPW
Trigger: CCAGGGCATTCGGCTCAAAGAGAGCGGAGCCATCAACACCTCCCTCTTTGTACTGGGCAAAGTGGTGGATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 90 bp AGGGAGGTGTTGATGGCTCCGCTCTCTTTGAGCCGAATGCCCTGGTaGCCTGTGCGACGGTTGTCCTCTGAACCAGCCAAATCAATAAGG +
Preference number: 6 (lower is better)
Translates to: REVLMAPLSLSRMPW*PVRRLSSEPAKSIR
Trigger: CCTTATTGATTTGGCTGGTTCAGAGGACAACCGTCGCACAGGCAACCAGGGCATTCGGCTCAAAGAGAGCGGAGCCATCAACACCTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 72 bp GGCAAAGGTGGCCTTACCTTCAGGAAAGACTCCACCTaGTTCCCAGAGATGCCTTCCACCTGTTCCAAGTCC +
Preference number: 6 (lower is better)
Translates to: GKGGLTFRKDST*FPEMPSTCSKS
Trigger: GGACTTGGAACAGGTGGAAGGCATCTCTGGGAAGCAGGTGGAGTCTTTCCTGAAGGTAAGGCCACCTTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205754.2
CDS CCA 72 bp AAGCCGGGTGGCTCCTACAGCTCGATTTCTACTGGCTaGAAGGAAGTGCTGCTCGAAGTCAGAGAAGCTGGT +
Preference number: 6 (lower is better)
Translates to: KPGGSYSSISTG*KEVLLEVREAG
Trigger: ACCAGCTTCTCTGACTTCGAGCAGCACTTCCTTCCAGCCAGTAGAAATCGAGCTGTAGGAGCCACCCGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 72 bp ATGCGAGGGAGGCCCTGGTTTAATGCATCCACCACTTaGCCCAGTACAAAGAGGGAGGTGTTGATGGCTCCG +
Preference number: 6 (lower is better)
Translates to: MRGRPWFNASTT*PSTKREVLMAP
Trigger: CGGAGCCATCAACACCTCCCTCTTTGTACTGGGCAAAGTGGTGGATGCATTAAACCAGGGCCTCCCTCGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 90 bp CGGTATGGTATGCGAGGGAGGCCCTGGTTTAATGCATCCACCACTTaGCCCAGTACAAAGAGGGAGGTGTTGATGGCTCCGCTCTCTTTG +
Preference number: 6 (lower is better)
Translates to: RYGMRGRPWFNASTT*PSTKREVLMAPLSL
Trigger: CAAAGAGAGCGGAGCCATCAACACCTCCCTCTTTGTACTGGGCAAAGTGGTGGATGCATTAAACCAGGGCCTCCCTCGCATACCATACCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 72 bp AGCTTGCTGTCCCGGTATGGTATGCGAGGGAGGCCCTaGTTTAATGCATCCACCACTTTGCCCAGTACAAAG +
Preference number: 6 (lower is better)
Translates to: SLLSRYGMRGRP*FNASTTLPSTK
Trigger: CTTTGTACTGGGCAAAGTGGTGGATGCATTAAACCAGGGCCTCCCTCGCATACCATACCGGGACAGCAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 72 bp CAGCTTCTGACTCAGGGGATGGCTCCAGCTTCCTTTTaGGGCCTTTCTTCAGGAGCTGGATTTGGTTTGAGG +
Preference number: 6 (lower is better)
Translates to: QLLTQGMAPASF*GLSSGAGFGLR
Trigger: CCTCAAACCAAATCCAGCTCCTGAAGAAAGGCCCCAAAAGGAAGCTGGAGCCATCCCCTGAGTCAGAAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 72 bp CCACTGTGCCACTATAAGAGGCAGGCGGCTGGAGAATaGTGGGAGTGTTCTCTTTTTCCCTTGGATCCGGTG +
Preference number: 6 (lower is better)
Translates to: PLCHYKRQAAGE*WECSLFPLDPV
Trigger: CACCGGATCCAAGGGAAAAAGAGAACACTCCCACAATTCTCCAGCCGCCTGCCTCTTATAGTGGCACAGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 90 bp TGGTTTAATGCATCCACCACTTTGCCCAGTACAAAGAGGGAGGTGTaGATGGCTCCGCTCTCTTTGAGCCGAATGCCCTGGTTGCCTGTG +
Preference number: 6 (lower is better)
Translates to: WFNASTTLPSTKREV*MAPLSLSRMPWLPV
Trigger: CACAGGCAACCAGGGCATTCGGCTCAAAGAGAGCGGAGCCATCAACACCTCCCTCTTTGTACTGGGCAAAGTGGTGGATGCATTAAACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 72 bp CCTACAGCTCGATTTCTACTGGCTGGAAGGAAGTGCTaGTCGAAGTCAGAGAAGCTGGTGATGGGCTTCTGT +
Preference number: 6 (lower is better)
Translates to: PTARFLLAGRKC*SKSEKLVMGFC
Trigger: ACAGAAGCCCATCACCAGCTTCTCTGACTTCGAGCAGCACTTCCTTCCAGCCAGTAGAAATCGAGCTGTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 72 bp AAGCTCAAGAGATTCGCCTTCAGGAAAGACTCCACCTaGTTCCCAGAGATGCCTTCCACCTGTTCCAAGTCC +
Preference number: 6 (lower is better)
Translates to: KLKRFAFRKDST*FPEMPSTCSKS
Trigger: GGACTTGGAACAGGTGGAAGGCATCTCTGGGAAGCAGGTGGAGTCTTTCCTGAAGGCGAATCTCTTGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 72 bp CACTGGCATTCTGCCCTTCCAGCAAGTGCCTTAGGATaGGCTGTACTGAACCTACATAGACTTCCTGCTGAG +
Preference number: 6 (lower is better)
Translates to: HWHSALPASALG*AVLNLHRLPAE
Trigger: CTCAGCAGGAAGTCTATGTAGGTTCAGTACAGCCCATCCTAAGGCACTTGCTGGAAGGGCAGAATGCCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS CCA 72 bp GGAGTGTTCTCTTTTTCCCTTGGATCCGGTGCCTCCTaGGCCAACACCTTGGCTTCCAGTTCTTTTTGCTTC +
Preference number: 6 (lower is better)
Translates to: GVFSFSLGSGAS*ANTLASSSFCF
Trigger: GAAGCAAAAAGAACTGGAAGCCAAGGTGTTGGCCCAGGAGGCACCGGATCCAAGGGAAAAAGAGAACACTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 72 bp CAGCTTCTGACTCAGGGGATGGCTCCAGCTTCCTTTTaGGGCCTTTCTTCAGGAGCTGGATTTGGTTTGAGN +
Preference number: 6 (lower is better)
Translates to: QLLTQGMAPASF*GLSSGAGFGLX
Trigger: NCTCAAACCAAATCCAGCTCCTGAAGAAAGGCCCCAAAAGGAAGCTGGAGCCATCCCCTGAGTCAGAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205754.2
CDS CAA 72 bp TCCTTTTGGGGCCTTTCTTCAGGAGCTGGATTTGGTTaGAGGACTCTCGCTGCTTCTGAATCCGTTGCAGGG +
Preference number: 6 (lower is better)
Translates to: SFWGLSSGAGFG*RTLAASESVAG
Trigger: CCCTGCAACGGATTCAGAAGCAGCGAGAGTCCTCAAACCAAATCCAGCTCCTGAAGAAAGGCCCCAAAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 90 bp CGCAGTTCCCGAGCTGAGCCTTCATTCAGCAGATCCAATAATTTTTaGCGCCCATGTGCCAGTAACTCTGGGCTAATCTGTACCTCCCAG +
Preference number: 6 (lower is better)
Translates to: RSSRAEPSFSRSNNF*RPCASNSGLICTSQ
Trigger: CTGGGAGGTACAGATTAGCCCAGAGTTACTGGCACATGGGCGCAAAAAATTATTGGATCTGCTGAATGAAGGCTCAGCTCGGGAACTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205754.2
CDS TCA 72 bp CCGAATGCCCTGGTTGCCTGTGCGACGGTTGTCCTCTaGACCAGCCAAATCAATAAGGTAGAGTTTTCCTTC +
Preference number: 6 (lower is better)
Translates to: PNALVACATVVL*TSQINKVEFSF
Trigger: GAAGGAAAACTCTACCTTATTGATTTGGCTGGTTCAGAGGACAACCGTCGCACAGGCAACCAGGGCATTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS TCA 72 bp AGGAGCTGGATTTGGTTTGAGGACTCTCGCTGCTTCTaGATCCGTTGCAGGGGCATCACTACAGCCTTTTTC +
Preference number: 6 (lower is better)
Translates to: RSWIWFEDSRCF*IRCRGITTAFF
Trigger: GAAAAAGGCTGTAGTGATGCCCCTGCAACGGATTCAGAAGCAGCGAGAGTCCTCAAACCAAATCCAGCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 72 bp TCCCAGTTGATTCTTCTTCAGGGCCTTTGGCCTTCTTaGCCTCTGACGGGCCTAGCAGTTCTTTCTGAGACA +
Preference number: 6 (lower is better)
Translates to: SQLILLQGLWPS*PLTGLAVLSET
Trigger: TGTCTCAGAAAGAACTGCTAGGCCCGTCAGAGGCAAAGAAGGCCAAAGGCCCTGAAGAAGAATCAACTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS TCA 72 bp CCTGGTAAAAACGTCTTTCAGGAGCAATGTTGGCAATaGGGATGCTATGAGCTGAGCCTCCCAGAGAGTCCT +
Preference number: 6 (lower is better)
Translates to: PGKNVFQEQCWQ*GCYELSLPESP
Trigger: AGGACTCTCTGGGAGGCTCAGCTCATAGCATCCTCATTGCCAACATTGCTCCTGAAAGACGTTTTTACCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CCA 72 bp CCAGCAAACGTTCCATACTCAGGAGGTTCTCCAACATaGCTGGATCCATATTGCTTAGCTTCTGTAAGAGGC +
Preference number: 6 (lower is better)
Translates to: PANVPYSGGSPT*LDPYCLASVRG
Trigger: GCCTCTTACAGAAGCTAAGCAATATGGATCCAGCCATGTTGGAGAACCTCCTGAGTATGGAACGTTTGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS GCA 72 bp TACTCAGGAGGTTCTCCAACATGGCTGGATCCATATTaGTTAGCTTCTGTAAGAGGCTTAGTTTCTGGGAGG +
Preference number: 6 (lower is better)
Translates to: YSGGSPTWLDPY*LASVRGLVSGR
Trigger: CCTCCCAGAAACTAAGCCTCTTACAGAAGCTAAGCAATATGGATCCAGCCATGTTGGAGAACCTCCTGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8
CDS CAA 72 bp CGAGCTGAGCCTTCATTCAGCAGATCCAATAATTTTTaGCGCCCATGTGCCAGTAACTCTGGGCTAATCTGT +
Preference number: 6 (lower is better)
Translates to: RAEPSFSRSNNF*RPCASNSGLIC
Trigger: ACAGATTAGCCCAGAGTTACTGGCACATGGGCGCAAAAAATTATTGGATCTGCTGAATGAAGGCTCAGCTCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205754.2
CDS GCA 72 bp TGGGCTGTACTGAACCTACATAGACTTCCTGCTGAGTaGTCTTCTCGCCATAGAAGGCATCAAACTGATATT +
Preference number: 6 (lower is better)
Translates to: WAVLNLHRLPAE*SSRHRRHQTDI
Trigger: AATATCAGTTTGATGCCTTCTATGGCGAGAAGAGCACTCAGCAGGAAGTCTATGTAGGTTCAGTACAGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032915.8
ENSMUST00000205806.2
CDS CCA 72 bp ATCAATAAGGTAGAGTTTTCCTTCCCGCTGGCGAAATaGAGTCAAACGTTCACGCTGATCTACCTTGACCAA +
Preference number: 6 (lower is better)
Translates to: INKVEFSFPLAK*SQTFTLIYLDQ
Trigger: TTGGTCAAGGTAGATCAGCGTGAACGTTTGACTCCATTTCGCCAGCGGGAAGGAAAACTCTACCTTATTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032915.8