RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KIF14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041498

Ensembl transcript IDs: ENSMUST00000047817.12, ENSMUST00000189413.7, ENSMUST00000195274.3, ENSMUST00000201676.4

Found 534 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACCCACTGAATCCTATTCGGGGTGCAGTCCCCAGAGGACACTGCTaGGGTTGCGTCTCCGTGTGGTTCACAGGCGCGTCTTGGCCCGCT +
Preference number: 1 (lower is better)
Translates to: YPLNPIRGAVPRGHC*GCVSVWFTGASWPA
Trigger: AGCGGGCCAAGACGCGCCTGTGAACCACACGGAGACGCAACCCCAGCAGTGTCCTCTGGGGACTGCACCCCGAATAGGATTCAGTGGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp GGGACTGACTGTAACCCCAGCATTCAGGAGGCAAAGGCAGCAAGGTaGCAGGGTGAGGCCACACCGCACTGCTCAGCTGGACCAAGTCTA +
Preference number: 1 (lower is better)
Translates to: GTDCNPSIQEAKAAR*QGEATPHCSAGPSL
Trigger: TAGACTTGGTCCAGCTGAGCAGTGCGGTGTGGCCTCACCCTGTCACCTTGCTGCCTTTGCCTCCTGAATGCTGGGGTTACAGTCAGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp CCACTCCACAGTACTGGCTTTCATCTGCTTAGTGACCTCCTCTCGTaGACTCTGCCTGGAGAGGTCCTGCCTGAGGTCTTGCGCGGTCTC +
Preference number: 1 (lower is better)
Translates to: PLHSTGFHLLSDLLS*TLPGEVLPEVLRGL
Trigger: GAGACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCACTAAGCAGATGAAAGCCAGTACTGTGGAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp ACAAACAGACCAATGAACCAGCTAGACAGCACCAGGGTGGTGAAGTaGGAGTGGGTGGGTGGGTGGGTGGGGGAGCACCCTCATAGAAGC +
Preference number: 1 (lower is better)
Translates to: TNRPMNQLDSTRVVK*EWVGGWVGEHPHRS
Trigger: GCTTCTATGAGGGTGCTCCCCCACCCACCCACCCACCCACTCCCACTTCACCACCCTGGTGCTGTCTAGCTGGTTCATTGGTCTGTTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp AGCACGAGGCAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTaGGCTGAAGTCACTGTGAAGCTTGCGAGCCAGGCTGCAGATAGT +
Preference number: 1 (lower is better)
Translates to: STRQFISAAASRGRV*AEVTVKLASQAADS
Trigger: ACTATCTGCAGCCTGGCTCGCAAGCTTCACAGTGACTTCAGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTGCCTCGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp CGCCCTCCTTCCTCTCTGTCACCCAGTGCCCACGGACATAGTCCATaGAGTGGTGGGACTTTTCCTTCTGCAGATGAGGAACCAGGAAGG +
Preference number: 1 (lower is better)
Translates to: RPPSSLSPSAHGHSP*SGGTFPSADEEPGR
Trigger: CCTTCCTGGTTCCTCATCTGCAGAAGGAAAAGTCCCACCACTTCATGGACTATGTCCGTGGGCACTGGGTGACAGAGAGGAAGGAGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp AGGCGCGTCTTGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTGACTTaGACTGCTCTTCCTTGCTATTCGAAGAACAAGACTCCCAGGGTT +
Preference number: 1 (lower is better)
Translates to: RRVLARFSRSQPCLT*TALPCYSKNKTPRV
Trigger: AACCCTGGGAGTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAGACGCGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp TGCTCGTTACAGAAGGGAGACTACCATTGGCTTATCATCTGCTACTaGGCAAGCGCCCTCCTTCCTCTCTGTCACCCAGTGCCCACGGAC +
Preference number: 1 (lower is better)
Translates to: CSLQKGDYHWLIICY*ASALLPLCHPVPTD
Trigger: GTCCGTGGGCACTGGGTGACAGAGAGGAAGGAGGGCGCTTGCCCAGTAGCAGATGATAAGCCAATGGTAGTCTCCCTTCTGTAACGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 90 bp TTCACAGGCGCGTCTTGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTaGCTTGCACTGCTCTTCCTTGCTATTCGAAGAACAAGACTCCCA +
Preference number: 1 (lower is better)
Translates to: FTGASWPAFPAVSPV*LALLFLAIRRTRLP
Trigger: TGGGAGTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAGACGCGCCTGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp TTTTGCTGCTCGTTACAGAAGGGAGACTACCATTGGCTTATCATCTaGTACTGGGCAAGCGCCCTCCTTCCTCTCTGTCACCCAGTGCCC +
Preference number: 1 (lower is better)
Translates to: FCCSLQKGDYHWLII*YWASALLPLCHPVP
Trigger: GGGCACTGGGTGACAGAGAGGAAGGAGGGCGCTTGCCCAGTAGCAGATGATAAGCCAATGGTAGTCTCCCTTCTGTAACGAGCAGCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp ACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATaGTTACAGGCAAGAAGGCAGCTGTTTACATACAAAGGCCTGCAC +
Preference number: 1 (lower is better)
Translates to: TKRSNLGPTRAQQAP*LQARRQLFTYKGLH
Trigger: GTGCAGGCCTTTGTATGTAAACAGCTGCCTTCTTGCCTGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 90 bp CAGAATGAGACCGGGAGCTTTTATCGTTCATGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCAGTTCCAGCCAGCTCTGAATATCAG +
Preference number: 1 (lower is better)
Translates to: QNETGSFYRSCRWPP*LSVYFPVPASSEYQ
Trigger: CTGATATTCAGAGCTGGCTGGAACTGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCATGAACGATAAAAGCTCCCGGTCTCATTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp CTCGGTAACAGAAGTGTTACTTCCAGAGCAATGACCGGTACAGAGTaGACCGCAGGAGGAAACCCAGTGGCCAAAGAGGGAAAGGGAAAC +
Preference number: 1 (lower is better)
Translates to: LGNRSVTSRAMTGTE*TAGGNPVAKEGKGN
Trigger: GTTTCCCTTTCCCTCTTTGGCCACTGGGTTTCCTCCTGCGGTTCACTCTGTACCGGTCATTGCTCTGGAAGTAACACTTCTGTTACCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp GTTTCTCTGTGTAGACCAGGCTGTCCTCGAGCTCAGAGATCTGCCTaGCTCTGCCTCCTGAGTGCTGAGACTAAAGGCATGTTGTTTATG +
Preference number: 1 (lower is better)
Translates to: VSLCRPGCPRAQRSA*LCLLSAETKGMLFM
Trigger: CATAAACAACATGCCTTTAGTCTCAGCACTCAGGAGGCAGAGGCAGGCAGATCTCTGAGCTCGAGGACAGCCTGGTCTACACAGAGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp TCCTTTGAGACTCTTCCCTCAGCTCCGCCTCTAGGGCCTGGATTTTaGGCTCATACACAGCTTTTTGGGAAGAAAGTTCTTGCTGGGCCA +
Preference number: 1 (lower is better)
Translates to: SFETLPSAPPLGPGF*AHTQLFGKKVLAGP
Trigger: TGGCCCAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGAGCGCAAAATCCAGGCCCTAGAGGCGGAGCTGAGGGAAGAGTCTCAAAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp AAGGGAAGAAACTGGTGTGCTTGTAATGTCGGGCTCCCACTCATCTaGAGGGTCACAGAAGACATCCTCATCCCTGTCACCACCGTTACT +
Preference number: 1 (lower is better)
Translates to: KGRNWCACNVGLPLI*RVTEDILIPVTTVT
Trigger: AGTAACGGTGGTGACAGGGATGAGGATGTCTTCTGTGACCCTGCAGATGAGTGGGAGCCCGACATTACAAGCACACCAGTTTCTTCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp CCTGGGTACTGGAGACTTTGCTGCTGTTTTCCAGAACACAGAGCTTaGTCCCTTTCAGAACAGCTAGCTGACCCACACACTGAACAGCCT +
Preference number: 1 (lower is better)
Translates to: PGYWRLCCCFPEHRA*SLSEQLADPHTEQP
Trigger: AGGCTGTTCAGTGTGTGGGTCAGCTAGCTGTTCTGAAAGGGAGCAAGCTCTGTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp AGTGTTCAGTGCATAAAACGCACACCCAGCTTCCAAGCAGAGAACTaGGAAATAAGGCTGATCCATGTCCAGCCAACCCAGAGGGTGGGA +
Preference number: 1 (lower is better)
Translates to: SVQCIKRTPSFQAEN*EIRLIHVQPTQRVG
Trigger: TCCCACCCTCTGGGTTGGCTGGACATGGATCAGCCTTATTTCCCAGTTCTCTGCTTGGAAGCTGGGTGTGCGTTTTATGCACTGAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 90 bp GCCTCGCTGAGCCAGTACAAGGTAGAAAATCACCCAGCCAGTGTTTaGACAAAACCACAAGCTGCTCAAAGGCACAAGCAACCTGGATGG +
Preference number: 1 (lower is better)
Translates to: ASLSQYKVENHPASV*TKPQAAQRHKQPGW
Trigger: CCATCCAGGTTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCTACCTTGTACTGGCTCAGCGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp GCTTCTAAGATCCTTGCATGTCGGATTCTATGGTCTTCTAAGGCCTaGTTTGTGGCCAGGGTCTCCATCTCCAGTCGCCTTTTGTTCACG +
Preference number: 1 (lower is better)
Translates to: ASKILACRILWSSKA*FVARVSISSRLLFT
Trigger: CGTGAACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCATAGAATCCGACATGCAAGGATCTTAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp CAAGGTAGAAAATCACCCAGCCAGTGTTTGAACAAAACCACAAGCTaGTCAAAGGCACAAGCAACCTGGATGGTAAGAGCCTGTGCCGCC +
Preference number: 1 (lower is better)
Translates to: QGRKSPSQCLNKTTS*SKAQATWMVRACAA
Trigger: GGCGGCACAGGCTCTTACCATCCAGGTTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCTACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp TTCATGTCCTCGTTGACTTTGGCGATATTGACTATCAGGCGGGCTTaGGTGGCGTATCTGAGTGTGCTCAGCGTTTCCTCTATGTTGCTG +
Preference number: 1 (lower is better)
Translates to: FMSSLTLAILTIRRA*VAYLSVLSVSSMLL
Trigger: CAGCAACATAGAGGAAACGCTGAGCACACTCAGATACGCCACCCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp CAGTGTTTGAACAAAACCACAAGCTGCTCAAAGGCACAAGCAACCTaGATGGTAAGAGCCTGTGCCGCCCGGTCAGAGAACAGGTTATCT +
Preference number: 1 (lower is better)
Translates to: QCLNKTTSCSKAQAT*MVRACAARSENRLS
Trigger: AGATAACCTGTTCTCTGACCGGGCGGCACAGGCTCTTACCATCCAGGTTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp GTGATCATCGGCAATCAGCACTCCAGACAACTGGATGTCATGGCTTaGGCTTGGTGTGTGCTTTCCAACTGTGGTCACTCCTTCCTTTAC +
Preference number: 1 (lower is better)
Translates to: VIIGNQHSRQLDVMA*AWCVLSNCGHSFLY
Trigger: GTAAAGGAAGGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCTGATTGCCGATGATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp CTGGGGCACCCTCTCAGCGCAGATACAATCATCTCAACGGTTTGTTaGAAGCACGACTTCAGCTTCAAGAATTCTGACGCAAGGCTTAAC +
Preference number: 1 (lower is better)
Translates to: LGHPLSADTIISTVC*KHDFSFKNSDARLN
Trigger: GTTAAGCCTTGCGTCAGAATTCTTGAAGCTGAAGTCGTGCTTGCAACAAACCGTTGAGATGATTGTATCTGCGCTGAGAGGGTGCCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp ACAACTGGATGTCATGGCTTGAGCTTGGTGTGTGCTTTCCAACTGTaGTCACTCCTTCCTTTACCATGTAGAGCAGCATCTCCGACAGCT +
Preference number: 1 (lower is better)
Translates to: TTGCHGLSLVCAFQL*SLLPLPCRAASPTA
Trigger: AGCTGTCGGAGATGCTGCTCTACATGGTAAAGGAAGGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCCATGACATCCAGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp TGGTGCTCGGTTTTTCCATTAATCCAGATGAGTGTGAAGACTGCATaGTCTGAATCGGATGGATGTCATGCAGACAGCCAGAGACTCTCC +
Preference number: 1 (lower is better)
Translates to: WCSVFPLIQMSVKTA*SESDGCHADSQRLS
Trigger: GGAGAGTCTCTGGCTGTCTGCATGACATCCATCCGATTCAGAGCATGCAGTCTTCACACTCATCTGGATTAATGGAAAAACCGAGCACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp GCTTTTTGGGAAGAAAGTTCTTGCTGGGCCATCTCCTTTGCGATCTaGATTCCTTGCATCATTTCTTCCTTCGCCTTCAGCTGCGCATCT +
Preference number: 1 (lower is better)
Translates to: AFWEESSCWAISFAI*IPCIISSFAFSCAS
Trigger: AGATGCGCAGCTGAAGGCGAAGGAAGAAATGATGCAAGGAATTCAGATCGCAAAGGAGATGGCCCAGCAAGAACTTTCTTCCCAAAAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp CTCGGTTTTTCCATTAATCCAGATGAGTGTGAAGACTGCATGCTCTaGATCGGATGGATGTCATGCAGACAGCCAGAGACTCTCCTGTTC +
Preference number: 1 (lower is better)
Translates to: LGFSINPDECEDCML*IGWMSCRQPETLLF
Trigger: GAACAGGAGAGTCTCTGGCTGTCTGCATGACATCCATCCGATTCAGAGCATGCAGTCTTCACACTCATCTGGATTAATGGAAAAACCGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp AGAGTGGATTCCCGATATGGAATAAAAACCCTCTTTCCGTTTGCTTaGTCGGAGAGTGCAGATATGACCTTCCCCAAAGTCAGCAAGGAC +
Preference number: 1 (lower is better)
Translates to: RVDSRYGIKTLFPFA*SESADMTFPKVSKD
Trigger: GTCCTTGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTTTTATTCCATATCGGGAATCCACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp ATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATaGGATATTACACTAATAGATTACTGGAGCTGCCGCCCACCGCAT +
Preference number: 1 (lower is better)
Translates to: IHRSTSFALSICLTQ*DITLIDYWSCRPPH
Trigger: ATGCGGTGGGCGGCAGCTCCAGTAATCTATTAGTGTAATATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 90 bp TATTCCTGGAATACATCTTCCAAGAGCTCCAGATATCGGCCAGGTTaGCCTCTCCTAGCCCGAACCCAAGCTGTCACCAACATTAAATTA +
Preference number: 1 (lower is better)
Translates to: YSWNTSSKSSRYRPG*PLLARTQAVTNIKL
Trigger: TAATTTAATGTTGGTGACAGCTTGGGTTCGGGCTAGGAGAGGTCAACCTGGCCGATATCTGGAGCTCTTGGAAGATGTATTCCAGGAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp TGTAAGAGTGGATTCCCGATATGGAATAAAAACCCTCTTTCCGTTTaGTTGCTCGGAGAGTGCAGATATGACCTTCCCCAAAGTCAGCAA +
Preference number: 1 (lower is better)
Translates to: CKSGFPIWNKNPLSV*LLGECRYDLPQSQQ
Trigger: TTGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTTTTATTCCATATCGGGAATCCACTCTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp CTCCGAGATGTGCGTCCCGTTTACATATGTCTTTGCTTCTCCAGCTaGGACAATACTCACTGTTCCTCCAAAATTTCTGATAGTACAGTG +
Preference number: 1 (lower is better)
Translates to: LRDVRPVYICLCFSS*DNTHCSSKISDSTV
Trigger: CACTGTACTATCAGAAATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCACATCTCGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp ATTGGCTTCCTGAATCATCGTGGAGAGTTTCATGGAGTTCCAGTTTaGCTGAATGGTGAAAGTTTTATCCCTGTTTCCCCGATTCTCCTG +
Preference number: 1 (lower is better)
Translates to: IGFLNHRGEFHGVPV*LNGESFIPVSPILL
Trigger: CAGGAGAATCGGGGAAACAGGGATAAAACTTTCACCATTCAGCCAAACTGGAACTCCATGAAACTCTCCACGATGATTCAGGAAGCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp TTAGATTCAAACTTTTCCAGGCTCCAGAAAGTTGAGATCCCAAGCTaGAGGTTACGAACTCGAACAGAGGTATCAGAACGGCCTTTGTCT +
Preference number: 1 (lower is better)
Translates to: LDSNFSRLQKVEIPS*RLRTRTEVSERPLS
Trigger: AGACAAAGGCCGTTCTGATACCTCTGTTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGTTTGAATCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp CATTGCTGCAAGTTTAGATTCAAACTTTTCCAGGCTCCAGAAAGTTaGGATCCCAAGCTGGAGGTTACGAACTCGAACAGAGGTATCAGA +
Preference number: 1 (lower is better)
Translates to: HCCKFRFKLFQAPES*DPKLEVTNSNRGIR
Trigger: TCTGATACCTCTGTTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGTTTGAATCTAAACTTGCAGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp TTTTCAATTTCTAAAGCTTCTAAGATCCTTGCATGTCGGATTCTATaGTCTTCTAAGGCCTGCTTTGTGGCCAGGGTCTCCATCTCCAGT +
Preference number: 1 (lower is better)
Translates to: FSISKASKILACRIL*SSKACFVARVSISS
Trigger: ACTGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCATAGAATCCGACATGCAAGGATCTTAGAAGCTTTAGAAATTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp TGCAAATCCCGGGAAGAAAGGACTCTGATGAATTTGAGTAAATGGTaGTCGGTTTTTCCATTAATCCAGATGAGTGTGAAGACTGCATGC +
Preference number: 1 (lower is better)
Translates to: CKSREERTLMNLSKW*SVFPLIQMSVKTAC
Trigger: GCATGCAGTCTTCACACTCATCTGGATTAATGGAAAAACCGAGCACCATTTACTCAAATTCATCAGAGTCCTTTCTTCCCGGGATTTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp TCATCCTGCTCTTCATGGGCTTTGGAGATGGCAATCACCCCATTATaGAGCCTAAGGAGATTATTTATCAGGCTATCTGCTATAGTTTTC +
Preference number: 1 (lower is better)
Translates to: SSCSSWALEMAITPL*SLRRLFIRLSAIVF
Trigger: GAAAACTATAGCAGATAGCCTGATAAATAATCTCCTTAGGCTTCATAATGGGGTGATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 90 bp CTTTGCAAATCCCGGGAAGAAAGGACTCTGATGAATTTGAGTAAATaGTGCTCGGTTTTTCCATTAATCCAGATGAGTGTGAAGACTGCA +
Preference number: 1 (lower is better)
Translates to: LCKSREERTLMNLSK*CSVFPLIQMSVKTA
Trigger: TGCAGTCTTCACACTCATCTGGATTAATGGAAAAACCGAGCACCATTTACTCAAATTCATCAGAGTCCTTTCTTCCCGGGATTTGCAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 90 bp CTGGAGGTTACGAACTCGAACAGAGGTATCAGAACGGCCTTTGTCTaGTGCATCATGTCTGCCAAAAATATAGCACTTTTTAAATTTGTC +
Preference number: 1 (lower is better)
Translates to: LEVTNSNRGIRTAFV*CIMSAKNIALFKFV
Trigger: GACAAATTTAAAAAGTGCTATATTTTTGGCAGACATGATGCATCAGACAAAGGCCGTTCTGATACCTCTGTTCGAGTTCGTAACCTCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 90 bp TTACTGTGGAAACCAGTGTTGGTAGATATACTATTAAACACATCATaGTTCAAGGGCTGTAATACACAACATTGGCATCTGCTTGCACCA +
Preference number: 1 (lower is better)
Translates to: LLWKPVLVDILLNTS*FKGCNTQHWHLLAP
Trigger: TGGTGCAAGCAGATGCCAATGTTGTGTATTACAGCCCTTGAAGCATGATGTGTTTAATAGTATATCTACCAACACTGGTTTCCACAGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 90 bp CATCATAAAATACCATTCATAGCCACATCAATCCAGCCTGAGATCTaGTTTACTTTCTTGACCCGAACTCCTAGATATCCACAATTCACA +
Preference number: 1 (lower is better)
Translates to: HHKIPFIATSIQPEI*FTFLTRTPRYPQFT
Trigger: TGTGAATTGTGGATATCTAGGAGTTCGGGTCAAGAAAGTAAAGCAGATCTCAGGCTGGATTGATGTGGCTATGAATGGTATTTTATGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 90 bp CTGTATAATCTTCATGACTTTGTTTTGAGCCTCTTTAACCATCGATaGAATATCCGAACAGCATCCCTGCAAAAACAATTGCAAATAGCC +
Preference number: 1 (lower is better)
Translates to: LYNLHDFVLSLFNHR*NIRTASLQKQLQIA
Trigger: GGCTATTTGCAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCATCGATGGTTAAAGAGGCTCAAAACAAAGTCATGAAGATTATACAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp TCAGTCGCTGCCCACTCGAGTGGGCGGTGGAGCAGCGCTCACTGCCGGCCAGGTTGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCA +
Preference number: 2 (lower is better)
Translates to: SVAAHSSGRWSSAHCRPGCRWPP*LSVYFP
Trigger: TGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCA...ACCTGGCCGGCAGTGAGCGCTGCTCCACCGCCCACTCGAGTGGGCAGCGACTGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp AGGACACTGCTGGGGTTGCGTCTCCGTGTGGTTCACAGGCGCGTCTaGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTGACTTGCACTGCT +
Preference number: 2 (lower is better)
Translates to: RTLLGLRLRVVHRRV*ARFSRSQPCLTCTA
Trigger: AGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAGACGCGCCTGTGAACCACACGGAGACGCAACCCCAGCAGTGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp CAGGCGCGTCTTGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTGACTaGCACTGCTCTTCCTTGCTATTCGAAGAACAAGACTCCCAGGGT +
Preference number: 2 (lower is better)
Translates to: QARLGPLFPQSALSD*HCSSLLFEEQDSQG
Trigger: ACCCTGGGAGTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAGACGCGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGGGTTAGGAGGCTTGTaGAGGGAAAATTGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: HGSADHGRECCSPISPHRGLGGL*RENWEG
Trigger: CCCTTCCCAATTTTCCCTCCACAAGCCTCCTAACCC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTGCGCTAAGGCACAAGCAACCTaGATGGTAAGAGCCTGTGCC +
Preference number: 2 (lower is better)
Translates to: VSTRQFISAAASRGRVCAKAQAT*MVRACA
Trigger: GGCACAGGCTCTTACCATCCAGGTTGCTTGTGCCTT...AGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACACGGGAGAGAGTGCTaGTCTCCTATCTCTCCCCAT +
Preference number: 2 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTHGREC*SPISPH
Trigger: ATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAGACAGCAATGCCTTCTaGACCACCCACTCGAACACA +
Preference number: 2 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTDSNAF*TTHSNT
Trigger: TGTGTTCGAGTGGGTGGTGCAGAAGGCATTGCTGTC...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTGCGCTCTTTGCTTCTCCAGCTaGGACAATACTCACTGTTCC +
Preference number: 2 (lower is better)
Translates to: VSTRQFISAAASRGRVCALCFSS*DNTHCS
Trigger: GGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAG...AGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp CCGCTTTTCCCGCAGTCAGCCCTGTCTGACTTGCACTGCTCTTCCTaGCTATTCGAAGAACAAGACTCCCAGGGTTTCGACAAACCAGGG +
Preference number: 2 (lower is better)
Translates to: PLFPQSALSDLHCSS*LFEEQDSQGFDKPG
Trigger: CCCTGGTTTGTCGAAACCCTGGGAGTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAAAGGGGGCAGCCTCTaGCCTCCCAAGTGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQKGGSL*PPKWFW
Trigger: CCAGAACCACTTGGGAGGTCAGAGGCTGCCCCCTTT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp GTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTGCGCTCTAGGGCCTGGATTTTaGGCTCATACACAGCTTTTT +
Preference number: 2 (lower is better)
Translates to: VSTRQFISAAASRGRVCALGPGF*AHTQLF
Trigger: AAAAAGCTGTGTATGAGCGCAAAATCCAGGCCCTAG...AGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGGCCACACACAGGCATaGACTTGGAATATTTACACT +
Preference number: 2 (lower is better)
Translates to: HGSADHGRECCSPISPHRGHTQA*TWNIYT
Trigger: AGTGTAAATATTCCAAGTCCATGCCTGTGTGTGGCC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAACCGCACTGCTCAGCTaGACCAAGTCTAAAAGCAAG +
Preference number: 2 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTTALLS*TKSKSK
Trigger: CTTGCTTTTAGACTTGGTCCAGCTGAGCAGTGCGGT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACAAGGCTGCAGGACCTaGAAGCAGCTATTCGTTCAT +
Preference number: 2 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTQGCRT*KQLFVH
Trigger: ATGAACGAATAGCTGCTTCCAGGTCCTGCAGCCTTG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp AGAAAATCACCCAGCCAGTGTTTGAACAAAACCACAAGCTGCTCAAAGGCACAACACTCGAGTGGGCGGTaGAGCAGCGCTCACTGCCGG +
Preference number: 2 (lower is better)
Translates to: RKSPSQCLNKTTSCSKAQHSSGR*SSAHCR
Trigger: CCGGCAGTGAGCGCTGCTCCACCGCCCACTCGAGTG...TTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp TGCTCGGAGAGTGCAGATATGACCTTCCCCAAAGTCAGCAAGGACTaGTTAATGCTCACACCTTCCTTCAGTCGCTGCCCACTCGAGTGG +
Preference number: 2 (lower is better)
Translates to: CSESADMTFPKVSKD*LMLTPSFSRCPLEW
Trigger: CCACTCGAGTGGGCAGCGACTGAAGGAAGGTGTGAGCATTAACAAGTCCTTGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp TCTAAGGCCTGCTTTGTGGCCAGGGTCTCCATCTCCAGTCGCCTTTaGTTCACGTACACTTCCTGTTCAAGATGCTGCTTCGCCCTTTCC +
Preference number: 2 (lower is better)
Translates to: SKACFVARVSISSRL*FTYTSCSRCCFALS
Trigger: GGAAAGGGCGAAGCAGCATCTTGAACAGGAAGTGTACGTGAACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAGACCACGGGAGAGAGTaGTGCTCTCCTATCTCTCCC +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQDHGRE*CSPISP
Trigger: GGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTC...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCTCCTGTTCAAGATGCTaGTTCGCCCTTTCCAACTCC +
Preference number: 2 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCSCSRC*FALSNS
Trigger: GGAGTTGGAAAGGGCGAAGCAGCATCTTGAACAGGA...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAACGGGGCACTCAGAATaGCCTGGTGACTGCACCTCT +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQTGHSE*PGDCTS
Trigger: AGAGGTGCAGTCACCAGGCCATTCTGAGTGCCCCGT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 90 bp ACACCATCCTGGAGAGCGGCCATGAACTCCTGGGTACTGGAGACTTaGCTGCTGTTTTCCAGAACACAGAGCTTGCTCCCTTTCAGAACA +
Preference number: 2 (lower is better)
Translates to: TPSWRAAMNSWVLET*LLFSRTQSLLPFRT
Trigger: TGTTCTGAAAGGGAGCAAGCTCTGTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCCAGGAGTTCATGGCCGCTCTCCAGGATGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCGTCACCGAGCTCCACTaGATGTACAGGCAGCAGCTA +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSVTELH*MYRQQL
Trigger: TAGCTGCTGCCTGTACATTCAGTGGAGCTCGGTGAC...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAGCAAGGTGACAGGGTaGGGCCACACCGCACTGCTC +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSKVTG*GHTALL
Trigger: GAGCAGTGCGGTGTGGCCTCACCCTGTCACCTTGCT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAACATCACACAGAGGTaGCCACGGGCCAGCCTAACA +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSNITQR*PRASLT
Trigger: TGTTAGGCTGGCCCGTGGGCACCTCTGTGTGATGTT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp GTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTGCGCTAGTGGTTGTTTCCTCTaGCCATTTTCACCTTTACAA +
Preference number: 2 (lower is better)
Translates to: VSTRQFISAAASRGRVCASGCFL*PFSPLQ
Trigger: TTGTAAAGGTGAAAATGGGCAGAGGAAACAACCACT...AGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGGGTTAGGAGGCTTGTaGAGGGAAAATTGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: THGKSLTEPAQVTQAKILGLGGL*RENWEG
Trigger: CCCTTCCCAATTTTCCCTCCACAAGCCTCCTAACCC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAGCTGGGTTTGGGCTTaGGTTTGGGGGACTGACTGT +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQSWVWA*VWGTDC
Trigger: ACAGTCAGTCCCCCAAACCCAAGCCCAAACCCAGCT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAGCCAACCCAGAGGGTaGGACATTGTTCAGGAGGGA +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQSQPRG*DIVQEG
Trigger: TCCCTCCTGAACAATGTCCCACCCTCTGGGTTGGCT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 90 bp CTGGATGGTAAGAGCCTGTGCCGCCCGGTCAGAGAACAGGTTATCTaGACTTTCTTCATCCTGCTCTTCATGGGCTTTGGAGATGGCAAT +
Preference number: 2 (lower is better)
Translates to: LDGKSLCRPVREQVI*TFFILLFMGFGDGN
Trigger: ATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGAAGAAAGTCAAGATAACCTGTTCTCTGACCGGGCGGCACAGGCTCTTACCATCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAAAGGGGGCAGCCTCTaGCCTCCCAAGTGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQKGGSL*PPKWFW
Trigger: CCAGAACCACTTGGGAGGTCAGAGGCTGCCCCCTTT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATATTGCACAGCAAGGTaGAAACTGCCATTTTGGTAC +
Preference number: 2 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTYCTAR*KLPFWY
Trigger: GTACCAAAATGGCAGTTTTCACCTTGCTGTGCAATA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACGGTTCTGGAGCTCATaGGATTTATTAAAGGCACTT +
Preference number: 2 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTRFWSS*DLLKAL
Trigger: AAGTGCCTTTAATAAATCTCATGAGCTCCAGAACCG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp GAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGGAGTTCCAGTTTGGCTaGATGGTGAAAGTTTTATCC +
Preference number: 2 (lower is better)
Translates to: ETPVPHSQHEAVHFRSCQEFQFG*MVKVLS
Trigger: GGATAAAACTTTCACCATTCAGCCAAACTGGAACTC...CTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCGACAGCAATGCCTTCTaGACCACCCACTCGAACACA +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSDSNAF*TTHSNT
Trigger: TGTGTTCGAGTGGGTGGTGCAGAAGGCATTGCTGTC...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATACAGGGCACTCAGAATaGCCTGGTCACTCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDTGHSE*PGHSAA
Trigger: GGCAGCAGAGTGACCAGGCCATTCTGAGTGCCCTGT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 90 bp TTCAACATACGGTCCAGAAACAGGGTGCTCCCTCGCGCGCAGTGGTaGTTTCCTCTGCCCATTTTCACCTTTACAAACCAGAAGATCATG +
Preference number: 2 (lower is better)
Translates to: FNIRSRNRVLPRAQW*FPLPIFTFTNQKIM
Trigger: CATGATCTTCTGGTTTGTAAAGGTGAAAATGGGCAGAGGAAACAACCACTGCGCGCGAGGGAGCACCCTGTTTCTGGACCGTATGTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp ATTCATGTCCTCGTTGACTTTGGCGATATTGACTATCAGGCGGGCTaGGGTGGCGTATCTGAGTGTGCTCAGCGTTTCCTCTATGTTGCT +
Preference number: 2 (lower is better)
Translates to: IHVLVDFGDIDYQAG*GGVSECAQRFLYVA
Trigger: AGCAACATAGAGGAAACGCTGAGCACACTCAGATACGCCACCCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp AGCCTCGCTGAGCCAGTACAAGGTAGAAAATCACCCAGCCAGTGTTaGAACAAAACCACAAGCTGCTCAAAGGCACAAGCAACCTGGATG +
Preference number: 2 (lower is better)
Translates to: SLAEPVQGRKSPSQC*NKTTSCSKAQATWM
Trigger: CATCCAGGTTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCTACCTTGTACTGGCTCAGCGAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATATGACCGGTACAGAGTaGACCGCAGGAGGAAACCCA +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDMTGTE*TAGGNP
Trigger: TGGGTTTCCTCCTGCGGTTCACTCTGTACCGGTCAT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTCGAAAGCGTGCTGGTaGTGTATGGCCCATAAGGGC +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSKACW*CMAHKG
Trigger: GCCCTTATGGGCCATACATCACCAGCACGCTTTCGA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp CCAGTGTTTGAACAAAACCACAAGCTGCTCAAAGGCACAAGCAACCTGGATGGTCGGAGAGTGCAGATATaGCCTTCCCCAAAGTCAGCA +
Preference number: 2 (lower is better)
Translates to: PVFEQNHKLLKGTSNLDGRRVQI*PSPKSA
Trigger: TGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCG...ACCATCCAGGTTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCACGGGAGAGAGTGCTaGTCTCCTATCTCTCCCCAT +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDHGREC*SPISPH
Trigger: ATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATCGAGCTCAGAGATCTaGCTGCCTCTGCCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSSSEI*LPLPPE
Trigger: CTCAGGAGGCAGAGGCAGGCAGATCTCTGAGCTCGA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp CTCCTCCTTCTAGAAAGGGAAGAAACTGGTGTGCTTGTAATGTCGGGCTCCCACACTTCCTGTTCAAGATaGTGCTTCGCCCTTTCCAAC +
Preference number: 2 (lower is better)
Translates to: LLLLEREETGVLVMSGSHTSCSR*CFALSN
Trigger: GTTGGAAAGGGCGAAGCAGCATCTTGAACAGGAAGT...GTGGGAGCCCGACATTACAAGCACACCAGTTTCTTCCCTTTCTAGAAGGAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCAGCCAATCAATTCTTTaGAAATCCCGGGAAGAAAGG +
Preference number: 2 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCSQSIL*KSREER
Trigger: CCTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCT...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAACAGGGCACTCAGAATaGCCTGGTCACTCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQTGHSE*PGHSAA
Trigger: GGCAGCAGAGTGACCAGGCCATTCTGAGTGCCCTGT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCACCGCACTGCTCAGCTaGACCAAGTCTAAAAGCAAG +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSTALLS*TKSKSK
Trigger: CTTGCTTTTAGACTTGGTCCAGCTGAGCAGTGCGGT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGTTTGGGCTTGGGTTTaGGGGACTGACTGTAACCCC +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDVWAWV*GTDCNP
Trigger: GGGGTTACAGTCAGTCCCCCAAACCCAAGCCCAAAC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 90 bp AGTGATCATCGGCAATCAGCACTCCAGACAACTGGATGTCATGGCTaGAGCTTGGTGTGTGCTTTCCAACTGTGGTCACTCCTTCCTTTA +
Preference number: 2 (lower is better)
Translates to: SDHRQSALQTTGCHG*SLVCAFQLWSLLPL
Trigger: TAAAGGAAGGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCTGATTGCCGATGATCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCTGCACGAGGAAAAGTaGCACCAAGTGTCCTTTTTG +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSLHEEK*HQVSFL
Trigger: CAAAAAGGACACTTGGTGTCACTTTTCCTCGTGCAG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAACATCACACAGAGGTaGCCACGGGCCAGCCTAACA +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQNITQR*PRASLT
Trigger: TGTTAGGCTGGCCCGTGGGCACCTCTGTGTGATGTT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCGGATAAGACAAGGCTaGAGGACCTGGAAGCAGCTA +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDRIRQG*RTWKQL
Trigger: TAGCTGCTTCCAGGTCCTGCAGCCTTGTCTTATCCG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp CTGAACAGCCTGCTGTATAATCTTCATGACTTTGTTTTGAGCCTCTTTAACCATTGGAGCAGCGCTCACTaGCGGCCAGGTCCACAAGGT +
Preference number: 2 (lower is better)
Translates to: LNSLLYNLHDFVLSLFNHWSSAH*RPGPQG
Trigger: ACCTTGTGGACCTGGCCGGCAGTGAGCGCTGCTCCA...ATGGTTAAAGAGGCTCAAAACAAAGTCATGAAGATTATACAGCAGGCTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp GGCTTGAGCTTGGTGTGTGCTTTCCAACTGTGGTCACTCCTTCCTTTACCATGTTACTCTCTGAATCTCTaGCATGTCTCTCTCCTGCTG +
Preference number: 2 (lower is better)
Translates to: GLSLVCAFQLWSLLPLPCYSLNL*HVSLLL
Trigger: CAGCAGGAGAGAGACATGGCAGAGATTCAGAGAGTA...ACATGGTAAAGGAAGGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGTTTGGGCTTGGGTTTaGGGGACTGACTGTAACCCC +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQVWAWV*GTDCNP
Trigger: GGGGTTACAGTCAGTCCCCCAAACCCAAGCCCAAAC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAAGATAGACACTAGCTaGGTTTGGGCTTGGGTTTGG +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSKIDTS*VWAWVW
Trigger: CCAAACCCAAGCCCAAACCCAGCTAGTGTCTATCTT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GCCTCAAGCCGAGACCTCTGTGCTGTAAGTAACTCATTTTTGGCAAACTCAAAACCACCACCTCTGTCTTaGTCTGTGTCATCACCAGGG +
Preference number: 2 (lower is better)
Translates to: ASSRDLCAVSNSFLANSKPPPLS*SVSSPG
Trigger: CCCTGGTGATGACACAGACCAAGACAGAGGTGGTGG...TTTTGAGTTTGCCAAAAATGAGTTACTTACAGCACAGAGGTCTCGGCTTGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ACTTTTCCAGGCTCCAGAAAGTTGAGATCCCAAGCTGGAGGTTACGAACTCGAAGACAACTGGATGTCATaGCTTGAGCTTGGTGTGTGC +
Preference number: 2 (lower is better)
Translates to: TFPGSRKLRSQAGGYELEDNWMS*LELGVC
Trigger: GCACACACCAAGCTCAAGCCATGACATCCAGTTGTC...TTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp GCTTTCAACTCTCTGATCAACTTTGCATTCATGTCCTCGTTGACTTaGGCGATATTGACTATCAGGCGGGCTTGGGTGGCGTATCTGAGT +
Preference number: 2 (lower is better)
Translates to: AFNSLINFAFMSSLT*AILTIRRAWVAYLS
Trigger: ACTCAGATACGCCACCCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAATGCAAAGTTGATCAGAGAGTTGAAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp GTAACACTGTGGGCTCCGAGATGTGCGTCCCGTTTACATATGTCTTaGCTTCTCCAGCTGGGACAATACTCACTGTTCCTCCAAAATTTC +
Preference number: 2 (lower is better)
Translates to: VTLWAPRCASRLHMS*LLQLGQYSLFLQNF
Trigger: GAAATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCACATCTCGGAGCCCACAGTGTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACTGCACGAGGAAAAGTaGCACCAAGTGTCCTTTTTG +
Preference number: 2 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSLHEEK*HQVSFL
Trigger: CAAAAAGGACACTTGGTGTCACTTTTCCTCGTGCAG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGTGCCTCATTTAAGGTaGTGTAGTTACTCACCGGCC +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDVPHLR*CSYSPA
Trigger: GGCCGGTGAGTAACTACACCACCTTAAATGAGGCAC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp TTGATGAGCCAATCAATTCTTTGCAAATCCCGGGAAGAAAGGACTCTGATGAATCGGCTCGTGATCCTGTaGTCATGTTCCTCTCCCTCC +
Preference number: 2 (lower is better)
Translates to: LMSQSILCKSREERTLMNRLVIL*SCSSPS
Trigger: GGAGGGAGAGGAACATGACCACAGGATCACGAGCCG...ATTCATCAGAGTCCTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCTCATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp GGCCTGGATTTTGCGCTCATACACAGCTTTTTGGGAAGAAAGTTCTaGCTGGGCCATCTCCTTTGCGATCTGAATTCCTTGCATCATTTC +
Preference number: 2 (lower is better)
Translates to: GLDFALIHSFLGRKF*LGHLLCDLNSLHHF
Trigger: GAAATGATGCAAGGAATTCAGATCGCAAAGGAGATGGCCCAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGAGCGCAAAATCCAGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp GACTTTCTTCATCCTGCTCTTCATGGGCTTTGGAGATGGCAATCACCCCATTATTCCTTCCATACTCTCTaGATCTCTGCCATGTCTCTC +
Preference number: 2 (lower is better)
Translates to: DFLHPALHGLWRWQSPHYSFHTL*ISAMSL
Trigger: GAGAGACATGGCAGAGATTCAGAGAGTATGGAAGGA...ATAATGGGGTGATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGAAGAAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp ATGAAATATCCGAACAGCATCCCTGCAAAAACAATTGCAAATAGCCTCCGAGTTACCACCCGATCACCATaGTGTAACACTGTGGGCTCC +
Preference number: 2 (lower is better)
Translates to: MKYPNSIPAKTIANSLRVTTRSP*CNTVGS
Trigger: GGAGCCCACAGTGTTACATCATGGTGATCGGGTGGT...AACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp GACTTTCTTCATCCTGCTCTTCATGGGCTTTGGAGATGGCAATCACCCCATTATCTTGAGCTTGGTGTGTaGTTTCCAACTGTGGTCACT +
Preference number: 2 (lower is better)
Translates to: DFLHPALHGLWRWQSPHYLELGV*FPTVVT
Trigger: AGTGACCACAGTTGGAAAGCACACACCAAGCTCAAG...ATAATGGGGTGATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGAAGAAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp ATGAAATATCCGAACAGCATCCCTGCAAAAACAATTGCAAATAGCCTCCGAGTTTGGTCTTCTAAGGCCTaGTTTGTGGCCAGGGTCTCC +
Preference number: 2 (lower is better)
Translates to: MKYPNSIPAKTIANSLRVWSSKA*FVARVS
Trigger: GGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCA...AACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGGCCACACACAGGCATaGACTTGGAATATTTACACT +
Preference number: 2 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSGHTQA*TWNIYT
Trigger: AGTGTAAATATTCCAAGTCCATGCCTGTGTGTGGCC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAATGAAGCAACCACTGTaGAACACAGAAAACACAGTA +
Preference number: 2 (lower is better)
Translates to: THGKSLTEPAQVTQAKILMKQPL*NTENTV
Trigger: TACTGTGTTTTCTGTGTTCCACAGTGGTTGCTTCAT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACCTCCCAAGTGGTTCTaGTTACATTTCACTACTACT +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQPPKWF*LHFTTT
Trigger: AGTAGTAGTGAAATGTAACCAGAACCACTTGGGAGG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAAGATAGACACTAGCTaGGTTTGGGCTTGGGTTTGG +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDKIDTS*VWAWVW
Trigger: CCAAACCCAAGCCCAAACCCAGCTAGTGTCTATCTT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTTCCAAGCAGAGAACTaGGAAATAAGGCTGATCCAT +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSFQAEN*EIRLIH
Trigger: ATGGATCAGCCTTATTTCCCAGTTCTCTGCTTGGAA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGTGCCTCATTTAAGGTaGTGTAGTTACTCACCGGCC +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQVPHLR*CSYSPA
Trigger: GGCCGGTGAGTAACTACACCACCTTAAATGAGGCAC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp ATGGACGGTCTCCAAGTGCACAATGGTTTCATACCCACTGAATCCTATTCGGGGGAGATTGACAAGGTTTaGCAAGTGGTTGTCCATTTG +
Preference number: 2 (lower is better)
Translates to: MDGLQVHNGFIPTESYSGEIDKV*QVVVHL
Trigger: CAAATGGACAACCACTTGCCAAACCTTGTCAATCTC...CCCCGAATAGGATTCAGTGGGTATGAAACCATTGTGCACTTGGAGACCGTCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ATGAAATATCCGAACAGCATCCCTGCAAAAACAATTGCAAATAGCCTCCGAGTTCTAAGGCCTGCTTTGTaGCCAGGGTCTCCATCTCCA +
Preference number: 2 (lower is better)
Translates to: MKYPNSIPAKTIANSLRVLRPAL*PGSPSP
Trigger: TGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAG...AACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp CCATTCATAGCCACATCAATCCAGCCTGAGATCTGCTTTACTTTCTaGACCCGAACTCCTAGATATCCACAATTCACAGATCGACCAGCT +
Preference number: 2 (lower is better)
Translates to: PFIATSIQPEICFTF*TRTPRYPQFTDRPA
Trigger: AGCTGGTCGATCTGTGAATTGTGGATATCTAGGAGTTCGGGTCAAGAAAGTAAAGCAGATCTCAGGCTGGATTGATGTGGCTATGAATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 90 bp ATTTCTGCTTTCAACTCTCTGATCAACTTTGCATTCATGTCCTCGTaGACTTTGGCGATATTGACTATCAGGCGGGCTTGGGTGGCGTAT +
Preference number: 2 (lower is better)
Translates to: ISAFNSLINFAFMSS*TLAILTIRRAWVAY
Trigger: ATACGCCACCCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAATGCAAAGTTGATCAGAGAGTTGAAAGCAGAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp GGAAGAAAGTTCTTGCTGGGCCATCTCCTTTGCGATCTGAATTCCTaGCATCATTTCTTCCTTCGCCTTCAGCTGCGCATCTTTAATTTC +
Preference number: 2 (lower is better)
Translates to: GRKFLLGHLLCDLNS*HHFFLRLQLRIFNF
Trigger: GAAATTAAAGATGCGCAGCTGAAGGCGAAGGAAGAAATGATGCAAGGAATTCAGATCGCAAAGGAGATGGCCCAGCAAGAACTTTCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAGACTTGATTGTAGATaGAGGGTTCTTAAGGCTATG +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSRLDCR*RVLKAM
Trigger: CATAGCCTTAAGAACCCTTCATCTACAATCAAGTCT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATTTTCCTTCTGCAGATaGGGAACCAGGAAGGAAGCA +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQFSFCR*GTRKEA
Trigger: TGCTTCCTTCCTGGTTCCTCATCTGCAGAAGGAAAA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp ATGGACGGTCTCCAAGTGCACAATGGTTTCATACCCACTGAATCCTATTCGGGGAGTTTGGCTGAATGGTaGAAGTTTTATCCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: MDGLQVHNGFIPTESYSGSLAEW*KFYPCF
Trigger: GAAACAGGGATAAAACTTTCACCATTCAGCCAAACT...CCCCGAATAGGATTCAGTGGGTATGAAACCATTGTGCACTTGGAGACCGTCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCATGAAGCAACCACTGTaGAACACAGAAAACACAGTA +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSMKQPL*NTENTV
Trigger: TACTGTGTTTTCTGTGTTCCACAGTGGTTGCTTCAT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCACGGACTGTGAACACTaGAATTCACTCATCCTTATA +
Preference number: 2 (lower is better)
Translates to: YSSETSAQAIALRQMQSSTDCEH*NSLILI
Trigger: TATAAGGATGAGTGAATTCCAGTGTTCACAGTCCGT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCGGTTCTGGAGCTCATaGGATTTATTAAAGGCACTT +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDRFWSS*DLLKAL
Trigger: AAGTGCCTTTAATAAATCTCATGAGCTCCAGAACCG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp ATGAAATATCCGAACAGCATCCCTGCAAAAACAATTGCAAATAGCCTCCGAGTTTGCTTGCTCGGAGAGTaGAGATATGACCTTCCCCAA +
Preference number: 2 (lower is better)
Translates to: MKYPNSIPAKTIANSLRVCLLGE*RYDLPQ
Trigger: TTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCA...AACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCCTCCCAAGTGGTTCTaGTTACATTTCACTACTACT +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDPPKWF*LHFTTT
Trigger: AGTAGTAGTGAAATGTAACCAGAACCACTTGGGAGG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp CCTGTCACCACCGTTACTCTCATAAAGCTCTTTCATTGCTGCAAGTTTAGATTCAGCACTCCAGACAACTaGATGTCATGGCTTGAGCTT +
Preference number: 2 (lower is better)
Translates to: PVTTVTLIKLFHCCKFRFSTPDN*MSWLEL
Trigger: AAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCT...GAATCTAAACTTGCAGCAATGAAAGAGCTTTATGAGAGTAACGGTGGTGACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ACTTTTCCAGGCTCCAGAAAGTTGAGATCCCAAGCTGGAGGTTACGAACTCGAACATGGAGTTCCAGTTTaGCTGAATGGTGAAAGTTTT +
Preference number: 2 (lower is better)
Translates to: TFPGSRKLRSQAGGYELEHGVPV*LNGESF
Trigger: AAAACTTTCACCATTCAGCCAAACTGGAACTCCATG...TTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAGGTATGATCTTATTTaGGACAGGGTTTCTCTGTGT +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDRYDLI*DRVSLC
Trigger: ACACAGAGAAACCCTGTCTCAAATAAGATCATACCT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAAGAGCAGAGAACAATaGATTAATGCAAGCACGGTA +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDKSREQ*INASTV
Trigger: TACCGTGCTTGCATTAATTCATTGTTCTCTGCTCTT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp AGAAAATCACCCAGCCAGTGTTTGAACAAAACCACAAGCTGCTCAAAGGCACAAAATCATGGCTGTTTTTaGATTTCCACCCAGGCTTTC +
Preference number: 2 (lower is better)
Translates to: RKSPSQCLNKTTSCSKAQNHGCF*ISTQAF
Trigger: GAAAGCCTGGGTGGAAATTCAAAAACAGCCATGATT...TTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACAAACAGTTGATTCTTaGACAAAGAGCTGTAGTTTT +
Preference number: 2 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQQTVDS*TKSCSF
Trigger: AAAACTACAGCTCTTTGTCCAAGAATCAACTGTTTG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CCA 90 bp TTTCCATTAATCCAGATGAGTGTGAAGACTGCATGCTCTGAATCGGATGGATGTCTTCCTGAATCATCGTaGAGAGTTTCATGGAGTTCC +
Preference number: 2 (lower is better)
Translates to: FPLIQMSVKTACSESDGCLPESS*RVSWSS
Trigger: GGAACTCCATGAAACTCTCCACGATGATTCAGGAAG...ACATCCATCCGATTCAGAGCATGCAGTCTTCACACTCATCTGGATTAATGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 90 bp CTTCAGCGATCTTTTGCTTTTCAATTTCTAAAGCTTCTAAGATCCTaGCATGTCGGATTCTATGGTCTTCTAAGGCCTGCTTTGTGGCCA +
Preference number: 2 (lower is better)
Translates to: LQRSFAFQFLKLLRS*HVGFYGLLRPALWP
Trigger: TGGCCACAAAGCAGGCCTTAGAAGACCATAGAATCCGACATGCAAGGATCTTAGAAGCTTTAGAAATTGAAAAGCAAAAGATCGCTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATATGTAACAAGGTTTTaGTGCTCGTTACAGAAGGGA +
Preference number: 2 (lower is better)
Translates to: ISTIHRSTSFALSICLTQYVTRF*CSLQKG
Trigger: TCCCTTCTGTAACGAGCAGCAAAACCTTGTTACATA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR GCA 90 bp CCTGTCACCACCGTTACTCTCATAAAGCTCTTTCATTGCTGCAAGTTTAGATTCGTTTACATATGTCTTTaGTTCTCCAGCTGGGACAAT +
Preference number: 2 (lower is better)
Translates to: PVTTVTLIKLFHCCKFRFVYICL*FSSWDN
Trigger: ATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAAC...GAATCTAAACTTGCAGCAATGAAAGAGCTTTATGAGAGTAACGGTGGTGACAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTTATATCAGTTACTGTaGAAACCAGTGTTGGTAGAT +
Preference number: 2 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLYQLL*KPVLVD
Trigger: ATCTACCAACACTGGTTTCCACAGTAACTGATATAA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR TCA 90 bp TTGATGAGCCAATCAATTCTTTGCAAATCCCGGGAAGAAAGGACTCTGATGAATCTGCTTTCAACTCTCTaGTCAACTTTGCATTCATGT +
Preference number: 2 (lower is better)
Translates to: LMSQSILCKSREERTLMNLLSTL*STLHSC
Trigger: ACATGAATGCAAAGTTGATCAGAGAGTTGAAAGCAG...ATTCATCAGAGTCCTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCTCATCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR TCA 90 bp TACATATGTCTTTGCTTCTCCAGCTGGGACAATACTCACTGTTCCTCCAAAATTAAGTGGTTGTCCATTTaGAATGTAACTCCTGCTTTC +
Preference number: 2 (lower is better)
Translates to: YICLCFSSWDNTHCSSKIKWLSI*NVTPAF
Trigger: GAAAGCAGGAGTTACATTTCAAATGGACAACCACTT...AATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp ATGCTCACACCTTCCTTCAGTCGCTGCCCACTCGAGTaGGCGGTGGAGCAGCGCTCACTGCCGGCCAGGTCC +
Preference number: 3 (lower is better)
Translates to: MLTPSFSRCPLE*AVEQRSLPARS
Trigger: GGACCTGGCCGGCAGTGAGCGCTGCTCCACCGCCCACTCGAGTGGGCAGCGACTGAAGGAAGGTGTGAGCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp GTGACCTCCTCTCGTGCACTCTGCCTGGAGAGGTCCTaGCTGAGGTCTTGCGCGGTCTCCAGCCCAGAGTCT +
Preference number: 3 (lower is better)
Translates to: VTSSRALCLERS*LRSCAVSSPES
Trigger: AGACTCTGGGCTGGAGACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp CCAATGAACCAGCTAGACAGCACCAGGGTGGTGAAGTaGGAGTGGGTGGGTGGGTGGGTGGGGGAGCACCCT +
Preference number: 3 (lower is better)
Translates to: PMNQLDSTRVVK*EWVGGWVGEHP
Trigger: AGGGTGCTCCCCCACCCACCCACCCACCCACTCCCACTTCACCACCCTGGTGCTGTCTAGCTGGTTCATTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp CCTCCTCTCGTGCACTCTGCCTGGAGAGGTCCTGCCTaGGGTCTTGCGCGGTCTCCAGCCCAGAGTCTAAGA +
Preference number: 3 (lower is better)
Translates to: PPLVHSAWRGPA*GLARSPAQSLR
Trigger: TCTTAGACTCTGGGCTGGAGACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp CGTGCACTCTGCCTGGAGAGGTCCTGCCTGAGGTCTTaGGCGGTCTCCAGCCCAGAGTCTAAGAGACTCTTC +
Preference number: 3 (lower is better)
Translates to: RALCLERSCLRS*AVSSPESKRLF
Trigger: GAAGAGTCTCTTAGACTCTGGGCTGGAGACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCAGAGTGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp CAGCATTCAGGAGGCAAAGGCAGCAAGGTGACAGGGTaGGGCCACACCGCACTGCTCAGCTGGACCAAGTCT +
Preference number: 3 (lower is better)
Translates to: QHSGGKGSKVTG*GHTALLSWTKS
Trigger: AGACTTGGTCCAGCTGAGCAGTGCGGTGTGGCCTCACCCTGTCACCTTGCTGCCTTTGCCTCCTGAATGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp CATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTGCGCTaGAGTCACTGTGAAGCTTGCGAGCCAGGCTGCAGA +
Preference number: 3 (lower is better)
Translates to: HFRSCQQRQSVR*SHCEACEPGCR
Trigger: TCTGCAGCCTGGCTCGCAAGCTTCACAGTGACTTCAGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp TCCGACAGGACGGGGCACTCAGAATGGCCTGGTGACTaGACCTCTTCAAAGCTCCTGGAGGCACAAGGGATG +
Preference number: 3 (lower is better)
Translates to: SDRTGHSEWPGD*TSSKLLEAQGM
Trigger: CATCCCTTGTGCCTCCAGGAGCTTTGAAGAGGTGCAGTCACCAGGCCATTCTGAGTGCCCCGTCCTGTCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp GCTTTCATCTGCTTAGTGACCTCCTCTCGTGCACTCTaGCTGGAGAGGTCCTGCCTGAGGTCTTGCGCGGTC +
Preference number: 3 (lower is better)
Translates to: AFICLVTSSRAL*LERSCLRSCAV
Trigger: GACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCACTAAGCAGATGAAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp CAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTaGGCTGAAGTCACTGTGAAGCTTGCGAGCCAGGCT +
Preference number: 3 (lower is better)
Translates to: QFISAAASRGRV*AEVTVKLASQA
Trigger: AGCCTGGCTCGCAAGCTTCACAGTGACTTCAGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCAGCGTTTCCTCTATGTaGCTGGCAGCGGGACTGACG +
Preference number: 3 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCSVSSM*LAAGLT
Trigger: CGTCAGTCCCGCTGCCAGCAACATAGAGGAAACGCT...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp ACCGGGAGCTTTTATCGTTCATGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCAGTTCCAGCCAGCTCT +
Preference number: 3 (lower is better)
Translates to: TGSFYRSCRWPP*LSVYFPVPASS
Trigger: AGAGCTGGCTGGAACTGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCATGAACGATAAAAGCTCCCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAGAGGGGTTAGGAGGCTaGTGGAGGGAAAATTGGGAA +
Preference number: 3 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTEGLGG*WRENWE
Trigger: TTCCCAATTTTCCCTCCACAAGCCTCCTAACCCCTC...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp GCGTCTTGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTaGCTTGCACTGCTCTTCCTTGCTATTCGAAGAACA +
Preference number: 3 (lower is better)
Translates to: ASWPAFPAVSPV*LALLFLAIRRT
Trigger: TGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAGACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp AGTACTGGCTTTCATCTGCTTAGTGACCTCCTCTCGTaGACTCTGCCTGGAGAGGTCCTGCCTGAGGTCTTG +
Preference number: 3 (lower is better)
Translates to: STGFHLLSDLLS*TLPGEVLPEVL
Trigger: CAAGACCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCACTAAGCAGATGAAAGCCAGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp CAGAAGGGAGACTACCATTGGCTTATCATCTGCTACTaGGCAAGCGCCCTCCTTCCTCTCTGTCACCCAGTG +
Preference number: 3 (lower is better)
Translates to: QKGDYHWLIICY*ASALLPLCHPV
Trigger: CACTGGGTGACAGAGAGGAAGGAGGGCGCTTGCCCAGTAGCAGATGATAAGCCAATGGTAGTCTCCCTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAATCCATATGCTATATTaGGGGGAGAGAATGCACAGG +
Preference number: 3 (lower is better)
Translates to: HGSADHGRECCSPISPHRIHMLY*GERMHR
Trigger: CCTGTGCATTCTCTCCCCCAAATATAGCATATGGAT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp TGCTTTGTGGCCAGGGTCTCCATCTCCAGTCGCCTTTTGTTCACGTACACTTCCTCCACCACCTCTGTCTaGGTCTGTGTCATCACCAGG +
Preference number: 3 (lower is better)
Translates to: CFVARVSISSRLLFTYTSSTTSV*VCVITR
Trigger: CCTGGTGATGACACAGACCAAGACAGAGGTGGTGGA...GGAAGTGTACGTGAACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ATCTGCTTAGTGACCTCCTCTCGTGCACTCTGCCTGGAGAGGTCCTGCCTGAGGAGCTGTGGGTCTTCATaGAGATTGACAAGGTTTGGC +
Preference number: 3 (lower is better)
Translates to: ICLVTSSRALCLERSCLRSCGSS*RLTRFG
Trigger: GCCAAACCTTGTCAATCTCAATGAAGACCCACAGCT...CCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCACTAAGCAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp GAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGTTGGGAAGAAAGTTCTaGCTGGGCCATCTCCTTTGC +
Preference number: 3 (lower is better)
Translates to: ETPVPHSQHEAVHFRSCQLGRKF*LGHLLC
Trigger: GCAAAGGAGATGGCCCAGCAAGAACTTTCTTCCCAA...CTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ATCTGCTTAGTGACCTCCTCTCGTGCACTCTGCCTGGAGAGGTCCTGCCTGAGGTGGGTACTGGAGACTTaGCTGCTGTTTTCCAGAACA +
Preference number: 3 (lower is better)
Translates to: ICLVTSSRALCLERSCLRWVLET*LLFSRT
Trigger: TGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCCA...CCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCACTAAGCAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp GGACGGTCTCCAAGTGCACAATGGTTTCATACCCACTaGATCCTATTCGGGGTGCAGTCCCCAGAGGACACT +
Preference number: 3 (lower is better)
Translates to: GRSPSAQWFHTH*ILFGVQSPEDT
Trigger: AGTGTCCTCTGGGGACTGCACCCCGAATAGGATTCAGTGGGTATGAAACCATTGTGCACTTGGAGACCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp TTCGACAAATGCAGTCAAGCCAACATCACACAGAGGTaGCCACGGGCCAGCCTAACACAGACAATCCCTCAG +
Preference number: 3 (lower is better)
Translates to: FDKCSQANITQR*PRASLTQTIPQ
Trigger: CTGAGGGATTGTCTGTGTTAGGCTGGCCCGTGGGCACCTCTGTGTGATGTTGGCTTGACTGCATTTGTCGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp AGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATaGTTACAGGCAAGAAGGCAGCTGTTTACATACAAA +
Preference number: 3 (lower is better)
Translates to: SNLGPTRAQQAP*LQARRQLFTYK
Trigger: TTTGTATGTAAACAGCTGCCTTCTTGCCTGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp CAGAATGAGACCGGGAGCTTTTATCGTTCATGCCGGTaGCCGCCGTGGCTCTCTGTTTATTTCCCAGTTCCA +
Preference number: 3 (lower is better)
Translates to: QNETGSFYRSCR*PPWLSVYFPVP
Trigger: TGGAACTGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCATGAACGATAAAAGCTCCCGGTCTCATTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp AACAAAACCACAAGCTGCTCAAAGGCACAAGCAACCTaGATGGTAAGAGCCTGTGCCGCCCGGTCAGAGAAC +
Preference number: 3 (lower is better)
Translates to: NKTTSCSKAQAT*MVRACAARSEN
Trigger: GTTCTCTGACCGGGCGGCACAGGCTCTTACCATCCAGGTTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp GTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGCAGAGGCAGAGTGTGCGCTAACTCACAACATTCATaGACAGGCCTTCAACATACG +
Preference number: 3 (lower is better)
Translates to: VSTRQFISAAASRGRVCANSQHS*TGLQHT
Trigger: CGTATGTTGAAGGCCTGTCAATGAATGTTGTGAGTT...AGCGCACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCGGGTCAATGTTCCGATaGCTTCTCTGGGCAGCTTTT +
Preference number: 3 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCGSMFR*LLWAAF
Trigger: AAAAGCTGCCCAGAGAAGCAATCGGAACATTGACCC...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCACTGGATGTCATGGCTaGAGCTTGGTGTGTGCTTTC +
Preference number: 3 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCTGCHG*SLVCAF
Trigger: GAAAGCACACACCAAGCTCAAGCCATGACATCCAGT...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp AACAGGTATCTTCAAGCCAGTGTCACCGAGCTCCACTaGATGTACAGGCAGCAGCTACAGCCAAAAGCAGGC +
Preference number: 3 (lower is better)
Translates to: NRYLQASVTELH*MYRQQLQPKAG
Trigger: GCCTGCTTTTGGCTGTAGCTGCTGCCTGTACATTCAGTGGAGCTCGGTGACACTGGCTTGAAGATACCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp TCCTCTCTGTCACCCAGTGCCCACGGACATAGTCCATaGAGTGGTGGGACTTTTCCTTCTGCAGATGAGGAA +
Preference number: 3 (lower is better)
Translates to: SSLSPSAHGHSP*SGGTFPSADEE
Trigger: TTCCTCATCTGCAGAAGGAAAAGTCCCACCACTTCATGGACTATGTCCGTGGGCACTGGGTGACAGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp TGGATCGTTGCATTGGTCCTCTCGAAAGCGTGCTGGTaGTGTATGGCCCATAAGGGCACCAACTGGGAAAGA +
Preference number: 3 (lower is better)
Translates to: WIVALVLSKACW*CMAHKGTNWER
Trigger: TCTTTCCCAGTTGGTGCCCTTATGGGCCATACATCACCAGCACGCTTTCGAGAGGACCAATGCAACGATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp AATACATCTTCCAAGAGCTCCAGATATCGGCCAGGTTaGCCTCTCCTAGCCCGAACCCAAGCTGTCACCAAC +
Preference number: 3 (lower is better)
Translates to: NTSSKSSRYRPG*PLLARTQAVTN
Trigger: GTTGGTGACAGCTTGGGTTCGGGCTAGGAGAGGTCAACCTGGCCGATATCTGGAGCTCTTGGAAGATGTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp GGCAATCAGCACTCCAGACAACTGGATGTCATGGCTTaGGCTTGGTGTGTGCTTTCCAACTGTGGTCACTCC +
Preference number: 3 (lower is better)
Translates to: GNQHSRQLDVMA*AWCVLSNCGHS
Trigger: GGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCTGATTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp TCGTTACAGAAGGGAGACTACCATTGGCTTATCATCTaGTACTGGGCAAGCGCCCTCCTTCCTCTCTGTCAC +
Preference number: 3 (lower is better)
Translates to: SLQKGDYHWLII*YWASALLPLCH
Trigger: GTGACAGAGAGGAAGGAGGGCGCTTGCCCAGTAGCAGATGATAAGCCAATGGTAGTCTCCCTTCTGTAACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp CGCAGTCAGCCCTGTCTGACTTGCACTGCTCTTCCTTaGTATTCGAAGAACAAGACTCCCAGGGTTTCGACA +
Preference number: 3 (lower is better)
Translates to: RSQPCLTCTALP*YSKNKTPRVST
Trigger: TGTCGAAACCCTGGGAGTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp TTGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTGACTTaGACTGCTCTTCCTTGCTATTCGAAGAACAAGACT +
Preference number: 3 (lower is better)
Translates to: LARFSRSQPCLT*TALPCYSKNKT
Trigger: AGTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp TCTAAGAGACTCTTCATCCCAGAGGTTACACCATCCTaGAGAGCGGCCATGAACTCCTGGGTACTGGAGACT +
Preference number: 3 (lower is better)
Translates to: SKRLFIPEVTPS*RAAMNSWVLET
Trigger: AGTCTCCAGTACCCAGGAGTTCATGGCCGCTCTCCAGGATGGTGTAACCTCTGGGATGAAGAGTCTCTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACTTGTGGAGGGAAAATaGGGAAGGGGGATAACATTT +
Preference number: 3 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLVEGK*GRGITF
Trigger: AAATGTTATCCCCCTTCCCAATTTTCCCTCCACAAG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCTGCGATCTGAATTCCTaGCATCATTTCTTCCTTCGC +
Preference number: 3 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCCDLNS*HHFFLR
Trigger: GCGAAGGAAGAAATGATGCAAGGAATTCAGATCGCA...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp GAACCAGGAAGGAAGCAGCTAGTGCCTCATTTAAGGTaGTGTAGTTACTCACCGGCCTGCAGTACAGTGTTC +
Preference number: 3 (lower is better)
Translates to: EPGRKQLVPHLR*CSYSPACSTVF
Trigger: GAACACTGTACTGCAGGCCGGTGAGTAACTACACCACCTTAAATGAGGCACTAGCTGCTTCCTTCCTGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp TCATCGGCAATCAGCACTCCAGACAACTGGATGTCATaGCTTGAGCTTGGTGTGTGCTTTCCAACTGTGGTC +
Preference number: 3 (lower is better)
Translates to: SSAISTPDNWMS*LELGVCFPTVV
Trigger: GACCACAGTTGGAAAGCACACACCAAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCTGATTGCCGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp CATGTCGGATTCTATGGTCTTCTAAGGCCTGCTTTGTaGCCAGGGTCTCCATCTCCAGTCGCCTTTTGTTCA +
Preference number: 3 (lower is better)
Translates to: HVGFYGLLRPAL*PGSPSPVAFCS
Trigger: TGAACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCATAGAATCCGACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCTGCCGCCCACCGCATaGATGGATAAGAGCAATACG +
Preference number: 3 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLPPTA*MDKSNT
Trigger: CGTATTGCTCTTATCCATCAATGCGGTGGGCGGCAG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp CTAGAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCAGAACCTTCTTGTGCTaGAGTTCTGAAGCTTTTCGT +
Preference number: 3 (lower is better)
Translates to: LETPVPHSQHEAVHFRSCRTFLC*SSEAFR
Trigger: ACGAAAAGCTTCAGAACTCAAGCACAAGAAGGTTCT...GCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp ATGACTGTTCATGACGACTGTCAGTGTCCCAGAGCTTaGATCAAAGCAGGCACGGGGATGCTTGCACTTTGT +
Preference number: 3 (lower is better)
Translates to: MTVHDDCQCPRA*IKAGTGMLALC
Trigger: ACAAAGTGCAAGCATCCCCGTGCCTGCTTTGATTCAAGCTCTGGGACACTGACAGTCGTCATGAACAGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp ACTCTTCCCTCAGCTCCGCCTCTAGGGCCTGGATTTTaGGCTCATACACAGCTTTTTGGGAAGAAAGTTCTT +
Preference number: 3 (lower is better)
Translates to: TLPSAPPLGPGF*AHTQLFGKKVL
Trigger: AAGAACTTTCTTCCCAAAAAGCTGTGTATGAGCGCAAAATCCAGGCCCTAGAGGCGGAGCTGAGGGAAGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp TGGAGACTTTGCTGCTGTTTTCCAGAACACAGAGCTTaGTCCCTTTCAGAACAGCTAGCTGACCCACACACT +
Preference number: 3 (lower is better)
Translates to: WRLCCCFPEHRA*SLSEQLADPHT
Trigger: AGTGTGTGGGTCAGCTAGCTGTTCTGAAAGGGAGCAAGCTCTGTGTTCTGGAAAACAGCAGCAAAGTCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp AGTCCATCATCACGGATAAGACAAGGCTGCAGGACCTaGAAGCAGCTATTCGTTCATTCCCAGTCAAGAGCA +
Preference number: 3 (lower is better)
Translates to: SPSSRIRQGCRT*KQLFVHSQSRA
Trigger: TGCTCTTGACTGGGAATGAACGAATAGCTGCTTCCAGGTCCTGCAGCCTTGTCTTATCCGTGATGATGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGAGGGGTTAGGAGGCTaGTGGAGGGAAAATTGGGAA +
Preference number: 3 (lower is better)
Translates to: TIHRSTSFALSICLTQWDEGLGG*WRENWE
Trigger: TTCCCAATTTTCCCTCCACAAGCCTCCTAACCCCTC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATCAGTGTCCCAGAGCTaGAATCAAAGCAGGCACGGG +
Preference number: 3 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSVSQS*NQSRHG
Trigger: CCCGTGCCTGCTTTGATTCAAGCTCTGGGACACTGA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp TGTGCGTCCCGTTTACATATGTCTTTGCTTCTCCAGCTGGGACAATACTCACTGTGTCATGGCTTGAGCTaGGTGTGTGCTTTCCAACTG +
Preference number: 3 (lower is better)
Translates to: CASRLHMSLLLQLGQYSLCHGLS*VCAFQL
Trigger: CAGTTGGAAAGCACACACCAAGCTCAAGCCATGACA...CAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp CTACACCCAGCGAGAGGCCACACACAGGCATGGACTTaGAATATTTACACTCCTCTCTTTTTATGCTCTCCT +
Preference number: 3 (lower is better)
Translates to: LHPARGHTQAWT*NIYTPLFLCSP
Trigger: AGGAGAGCATAAAAAGAGAGGAGTGTAAATATTCCAAGTCCATGCCTGTGTGTGGCCTCTCGCTGGGTGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp CGCTTTCTACACCCAGCGAGAGGCCACACACAGGCATaGACTTGGAATATTTACACTCCTCTCTTTTTATGC +
Preference number: 3 (lower is better)
Translates to: RFLHPARGHTQA*TWNIYTPLFLC
Trigger: GCATAAAAAGAGAGGAGTGTAAATATTCCAAGTCCATGCCTGTGTGTGGCCTCTCGCTGGGTGTAGAAAGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp TGTCATGGCTTGAGCTTGGTGTGTGCTTTCCAACTGTaGTCACTCCTTCCTTTACCATGTAGAGCAGCATCT +
Preference number: 3 (lower is better)
Translates to: CHGLSLVCAFQL*SLLPLPCRAAS
Trigger: AGATGCTGCTCTACATGGTAAAGGAAGGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCCATGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp TCTAAAGCTTCTAAGATCCTTGCATGTCGGATTCTATaGTCTTCTAAGGCCTGCTTTGTGGCCAGGGTCTCC +
Preference number: 3 (lower is better)
Translates to: SKASKILACRIL*SSKACFVARVS
Trigger: GGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCATAGAATCCGACATGCAAGGATCTTAGAAGCTTTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp AACTTTTCCAGGCTCCAGAAAGTTGAGATCCCAAGCTaGAGGTTACGAACTCGAACAGAGGTATCAGAACGG +
Preference number: 3 (lower is better)
Translates to: NFSRLQKVEIPS*RLRTRTEVSER
Trigger: CCGTTCTGATACCTCTGTTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGAAGATGGCAAACAGTaGATTCTTGGACAAAGAGCT +
Preference number: 3 (lower is better)
Translates to: THGKSLTEPAQVTQAKILEDGKQ*ILGQRA
Trigger: AGCTCTTTGTCCAAGAATCAACTGTTTGCCATCTTC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp GCCTCAAGCCGAGACCTCTGTGCTGTAAGTAACTCATTTTTGGCAAACTCAAAAAAACCCTCTTTCCGTTaGCTTGCTCGGAGAGTGCAG +
Preference number: 3 (lower is better)
Translates to: ASSRDLCAVSNSFLANSKKPSFR*LARRVQ
Trigger: CTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTT...TTTTGAGTTTGCCAAAAATGAGTTACTTACAGCACAGAGGTCTCGGCTTGAGGC
48% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACTTGTGGAGGGAAAATaGGGAAGGGGGATAACATTT +
Preference number: 3 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSLVEGK*GRGITF
Trigger: AAATGTTATCCCCCTTCCCAATTTTCCCTCCACAAG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp TGTGCGTCCCGTTTACATATGTCTTTGCTTCTCCAGCTGGGACAATACTCACTGAAAGTCAGCAAGGACTaGTTAATGCTCACACCTTCC +
Preference number: 3 (lower is better)
Translates to: CASRLHMSLLLQLGQYSLKVSKD*LMLTPS
Trigger: GGAAGGTGTGAGCATTAACAAGTCCTTGCTGACTTT...CAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ATGGACGGTCTCCAAGTGCACAATGGTTTCATACCCACTGAATCCTATTCGGGGCAATCATGGCTGTTTTaGAATTTCCACCCAGGCTTT +
Preference number: 3 (lower is better)
Translates to: MDGLQVHNGFIPTESYSGQSWLF*NFHPGF
Trigger: AAAGCCTGGGTGGAAATTCAAAAACAGCCATGATTG...CCCCGAATAGGATTCAGTGGGTATGAAACCATTGTGCACTTGGAGACCGTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp ACATTGGCATCTGCTTGCACCAGGTATGATCTTATTTaGGACAGGGTTTCTCTGTGTAGACCAGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: TLASACTRYDLI*DRVSLCRPGCP
Trigger: AGGACAGCCTGGTCTACACAGAGAAACCCTGTCTCAAATAAGATCATACCTGGTGCAAGCAGATGCCAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp GAAGAAAGTTCTTGCTGGGCCATCTCCTTTGCGATCTaGATTCCTTGCATCATTTCTTCCTTCGCCTTCAGC +
Preference number: 3 (lower is better)
Translates to: EESSCWAISFAI*IPCIISSFAFS
Trigger: GCTGAAGGCGAAGGAAGAAATGATGCAAGGAATTCAGATCGCAAAGGAGATGGCCCAGCAAGAACTTTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp TCCATTAATCCAGATGAGTGTGAAGACTGCATGCTCTaGATCGGATGGATGTCATGCAGACAGCCAGAGACT +
Preference number: 3 (lower is better)
Translates to: SINPDECEDCML*IGWMSCRQPET
Trigger: AGTCTCTGGCTGTCTGCATGACATCCATCCGATTCAGAGCATGCAGTCTTCACACTCATCTGGATTAATGGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp TATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTaGCCAGGCAATAGCACTTCGACAAATGCAGTCAAG +
Preference number: 3 (lower is better)
Translates to: YHFLHPLQFRDL*PGNSTSTNAVK
Trigger: CTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp TCCCAGAGCTTGAATCAAAGCAGGCACGGGGATGCTTaGACTTTGTGGACGTGTGATGCATTTTATAGTAAG +
Preference number: 3 (lower is better)
Translates to: SQSLNQSRHGDA*TLWTCDAFYSK
Trigger: CTTACTATAAAATGCATCACACGTCCACAAAGTGCAAGCATCCCCGTGCCTGCTTTGATTCAAGCTCTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp TCCCGATATGGAATAAAAACCCTCTTTCCGTTTGCTTaGTCGGAGAGTGCAGATATGACCTTCCCCAAAGTC +
Preference number: 3 (lower is better)
Translates to: SRYGIKTLFPFA*SESADMTFPKV
Trigger: GACTTTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTTTTATTCCATATCGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp TTCCTTTACCATGTAGAGCAGCATCTCCGACAGCTGTaGGTCTTCATTGAGATTGACAAGGTTTGGCAAGTG +
Preference number: 3 (lower is better)
Translates to: FLYHVEQHLRQL*VFIEIDKVWQV
Trigger: CACTTGCCAAACCTTGTCAATCTCAATGAAGACCCACAGCTGTCGGAGATGCTGCTCTACATGGTAAAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp AGCCAGTACAAGGTAGAAAATCACCCAGCCAGTGTTTaGACAAAACCACAAGCTGCTCAAAGGCACAAGCAA +
Preference number: 3 (lower is better)
Translates to: SQYKVENHPASV*TKPQAAQRHKQ
Trigger: TTGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCTACCTTGTACTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp ACTTTTCATGCACATGATTCTGACAGCAATGCCTTCTaGACCACCCACTCGAACACAGTCCCACAGATTATT +
Preference number: 3 (lower is better)
Translates to: TFHAHDSDSNAF*TTHSNTVPQII
Trigger: AATAATCTGTGGGACTGTGTTCGAGTGGGTGGTGCAGAAGGCATTGCTGTCAGAATCATGTGCATGAAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp AATAAAAACCCTCTTTCCGTTTGCTTGCTCGGAGAGTaGAGATATGACCTTCCCCAAAGTCAGCAAGGACTT +
Preference number: 3 (lower is better)
Translates to: NKNPLSVCLLGE*RYDLPQSQQGL
Trigger: AAGTCCTTGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTTTTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp GTTTTTCCATTAATCCAGATGAGTGTGAAGACTGCATaGTCTGAATCGGATGGATGTCATGCAGACAGCCAG +
Preference number: 3 (lower is better)
Translates to: VFPLIQMSVKTA*SESDGCHADSQ
Trigger: CTGGCTGTCTGCATGACATCCATCCGATTCAGAGCATGCAGTCTTCACACTCATCTGGATTAATGGAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp CGACAGCTGTGGGTCTTCATTGAGATTGACAAGGTTTaGCAAGTGGTTGTCCATTTGAAATGTAACTCCTGC +
Preference number: 3 (lower is better)
Translates to: RQLWVFIEIDKV*QVVVHLKCNSC
Trigger: GCAGGAGTTACATTTCAAATGGACAACCACTTGCCAAACCTTGTCAATCTCAATGAAGACCCACAGCTGTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CCA 72 bp CTGAATCATCGTGGAGAGTTTCATGGAGTTCCAGTTTaGCTGAATGGTGAAAGTTTTATCCCTGTTTCCCCG +
Preference number: 3 (lower is better)
Translates to: LNHRGEFHGVPV*LNGESFIPVSP
Trigger: CGGGGAAACAGGGATAAAACTTTCACCATTCAGCCAAACTGGAACTCCATGAAACTCTCCACGATGATTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGAAGATGGCAAACAGTaGATTCTTGGACAAAGAGCT +
Preference number: 3 (lower is better)
Translates to: TIHRSTSFALSICLTQWDEDGKQ*ILGQRA
Trigger: AGCTCTTTGTCCAAGAATCAACTGTTTGCCATCTTC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCATACCCACAATATTTTaGAGGACAGACATGAGTTTG +
Preference number: 3 (lower is better)
Translates to: YSSETSAQAIALRQMQSSIPTIF*RTDMSL
Trigger: CAAACTCATGTCTGTCCTCAAAAATATTGTGGGTAT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR-3UTR CAA 90 bp GCCTCAAGCCGAGACCTCTGTGCTGTAAGTAACTCATTTTTGGCAAACTCAAAACGTTTACATATGTCTTaGCTTCTCCAGCTGGGACAA +
Preference number: 3 (lower is better)
Translates to: ASSRDLCAVSNSFLANSKRLHMS*LLQLGQ
Trigger: TTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACG...TTTTGAGTTTGCCAAAAATGAGTTACTTACAGCACAGAGGTCTCGGCTTGAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp GACTTTCTTCATCCTGCTCTTCATGGGCTTTGGAGATGGCAATCACCCCATTATCTCATACACAGCTTTTaGGGAAGAAAGTTCTTGCTG +
Preference number: 3 (lower is better)
Translates to: DFLHPALHGLWRWQSPHYLIHSF*GRKFLL
Trigger: CAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGAG...ATAATGGGGTGATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGAAGAAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp ATTGCACAGCAAGGTGAAAACTGCCATTTTGGTACTTaGGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAA +
Preference number: 3 (lower is better)
Translates to: IAQQGENCHFGT*VSSRKLSAQEE
Trigger: TTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAAGTACCAAAATGGCAGTTTTCACCTTGCTGTGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp ATCATCGTGGAGAGTTTCATGGAGTTCCAGTTTGGCTaGATGGTGAAAGTTTTATCCCTGTTTCCCCGATTC +
Preference number: 3 (lower is better)
Translates to: IIVESFMEFQFG*MVKVLSLFPRF
Trigger: GAATCGGGGAAACAGGGATAAAACTTTCACCATTCAGCCAAACTGGAACTCCATGAAACTCTCCACGATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp AGCTTGGAAACTTGTTGTCTAGAACCTTCTTGTGCTTaGGTTCTGAAGCTTTTCGTCCTCCATTCAGCGACA +
Preference number: 3 (lower is better)
Translates to: SLETCCLEPSCA*VLKLFVLHSAT
Trigger: TGTCGCTGAATGGAGGACGAAAAGCTTCAGAACTCAAGCACAAGAAGGTTCTAGACAACAAGTTTCCAAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp GCATGGACTTGGAATATTTACACTCCTCTCTTTTTATaGTCTCCTGCACGAGGAAAAGTGACACCAAGTGTC +
Preference number: 3 (lower is better)
Translates to: AWTWNIYTPLFL*SPARGKVTPSV
Trigger: GACACTTGGTGTCACTTTTCCTCGTGCAGGAGAGCATAAAAAGAGAGGAGTGTAAATATTCCAAGTCCATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp CTCCTAGATATCCACAATTCACAGATCGACCAGCTTTaGCCTATCAATATGCCTCACCCAATGGGATATTAC +
Preference number: 3 (lower is better)
Translates to: LLDIHNSQIDQL*PINMPHPMGYY
Trigger: GTAATATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATATCTAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp GTGCGTCCCGTTTACATATGTCTTTGCTTCTCCAGCTaGGACAATACTCACTGTTCCTCCAAAATTTCTGAT +
Preference number: 3 (lower is better)
Translates to: VRPVYICLCFSS*DNTHCSSKISD
Trigger: ATCAGAAATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAACACTGCTGAGCAGATaGGACAACTGTAATATAGAC +
Preference number: 3 (lower is better)
Translates to: ISTIHRSTSFALSICLTQTLLSR*DNCNID
Trigger: GTCTATATTACAGTTGTCCAATCTGCTCAGCAGTGT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp AAGTTTAGATTCAAACTTTTCCAGGCTCCAGAAAGTTaGGATCCCAAGCTGGAGGTTACGAACTCGAACAGA +
Preference number: 3 (lower is better)
Translates to: KFRFKLFQAPES*DPKLEVTNSNR
Trigger: TCTGTTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGTTTGAATCTAAACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp ATACCATTCATAGCCACATCAATCCAGCCTGAGATCTaGTTTACTTTCTTGACCCGAACTCCTAGATATCCA +
Preference number: 3 (lower is better)
Translates to: IPFIATSIQPEI*FTFLTRTPRYP
Trigger: TGGATATCTAGGAGTTCGGGTCAAGAAAGTAAAGCAGATCTCAGGCTGGATTGATGTGGCTATGAATGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp TCCCGGGAAGAAAGGACTCTGATGAATTTGAGTAAATaGTGCTCGGTTTTTCCATTAATCCAGATGAGTGTG +
Preference number: 3 (lower is better)
Translates to: SREERTLMNLSK*CSVFPLIQMSV
Trigger: CACACTCATCTGGATTAATGGAAAAACCGAGCACCATTTACTCAAATTCATCAGAGTCCTTTCTTCCCGGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp GCTATTCGTTCATTCCCAGTCAAGAGCAGAGAACAATaGATTAATGCAAGCACGGTAGTTCTCCTATCACTT +
Preference number: 3 (lower is better)
Translates to: AIRSFPVKSREQ*INASTVVLLSL
Trigger: AAGTGATAGGAGAACTACCGTGCTTGCATTAATTCATTGTTCTCTGCTCTTGACTGGGAATGAACGAATAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp ACGAACTCGAACAGAGGTATCAGAACGGCCTTTGTCTaGTGCATCATGTCTGCCAAAAATATAGCACTTTTT +
Preference number: 3 (lower is better)
Translates to: TNSNRGIRTAFV*CIMSAKNIALF
Trigger: AAAAAGTGCTATATTTTTGGCAGACATGATGCATCAGACAAAGGCCGTTCTGATACCTCTGTTCGAGTTCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp CGGGAAGAAAGGACTCTGATGAATTTGAGTAAATGGTaGTCGGTTTTTCCATTAATCCAGATGAGTGTGAAG +
Preference number: 3 (lower is better)
Translates to: REERTLMNLSKW*SVFPLIQMSVK
Trigger: CTTCACACTCATCTGGATTAATGGAAAAACCGAGCACCATTTACTCAAATTCATCAGAGTCCTTTCTTCCCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR-3UTR CAA 90 bp CCTGTCACCACCGTTACTCTCATAAAGCTCTTTCATTGCTGCAAGTTTAGATTCATTCTCCTGAAGCATTaGTACTTCTTCAGCGATCTT +
Preference number: 3 (lower is better)
Translates to: PVTTVTLIKLFHCCKFRFILLKH*YFFSDL
Trigger: AAGATCGCTGAAGAAGTACAAATGCTTCAGGAGAAT...GAATCTAAACTTGCAGCAATGAAAGAGCTTTATGAGAGTAACGGTGGTGACAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp TTGAGATTGACAAGGTTTGGCAAGTGGTTGTCCATTTaGAATGTAACTCCTGCTTTCTGTAACTCCTTTGTC +
Preference number: 3 (lower is better)
Translates to: LRLTRFGKWLSI*NVTPAFCNSFV
Trigger: GACAAAGGAGTTACAGAAAGCAGGAGTTACATTTCAAATGGACAACCACTTGCCAAACCTTGTCAATCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATaGCTCACCCAATGGGATATTACACTAATAGATTAC +
Preference number: 3 (lower is better)
Translates to: TIHRSTSFALSI*LTQWDITLIDY
Trigger: GTAATCTATTAGTGTAATATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp TTGAATCAAAGCAGGCACGGGGATGCTTGCACTTTGTaGACGTGTGATGCATTTTATAGTAAGATTACTAAA +
Preference number: 3 (lower is better)
Translates to: LNQSRHGDACTL*TCDAFYSKITK
Trigger: TTTAGTAATCTTACTATAAAATGCATCACACGTCCACAAAGTGCAAGCATCCCCGTGCCTGCTTTGATTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR TCA 72 bp CTTCATGACTTTGTTTTGAGCCTCTTTAACCATCGATaGAATATCCGAACAGCATCCCTGCAAAAACAATTG +
Preference number: 3 (lower is better)
Translates to: LHDFVLSLFNHR*NIRTASLQKQL
Trigger: CAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCATCGATGGTTAAAGAGGCTCAAAACAAAGTCATGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR GCA 72 bp CTTTTCAATTTCTGCTTTCAACTCTCTGATCAACTTTaGATTCATGTCCTCGTTGACTTTGGCGATATTGAC +
Preference number: 3 (lower is better)
Translates to: LFNFCFQLSDQL*IHVLVDFGDID
Trigger: GTCAATATCGCCAAAGTCAACGAGGACATGAATGCAAAGTTGATCAGAGAGTTGAAAGCAGAAATTGAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR TCA 72 bp AGAGATGGAGAAACTAAAGATTATTGCACAGCAAGGTaGAAACTGCCATTTTGGTACTTGAGTAAGTTCAAG +
Preference number: 3 (lower is better)
Translates to: RDGETKDYCTAR*KLPFWYLSKFK
Trigger: CTTGAACTTACTCAAGTACCAAAATGGCAGTTTTCACCTTGCTGTGCAATAATCTTTAGTTTCTCCATCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR GCA 72 bp AAACCAGTGTTGGTAGATATACTATTAAACACATCATaGTTCAAGGGCTGTAATACACAACATTGGCATCTG +
Preference number: 3 (lower is better)
Translates to: KPVLVDILLNTS*FKGCNTQHWHL
Trigger: CAGATGCCAATGTTGTGTATTACAGCCCTTGAAGCATGATGTGTTTAATAGTATATCTACCAACACTGGTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CCA 72 bp AACACTGGAATTCACTCATCCTTATATCAGTTACTGTaGAAACCAGTGTTGGTAGATATACTATTAAACACA +
Preference number: 3 (lower is better)
Translates to: NTGIHSSLYQLL*KPVLVDILLNT
Trigger: TGTGTTTAATAGTATATCTACCAACACTGGTTTCCACAGTAACTGATATAAGGATGAGTGAATTCCAGTGTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp CTGGGGTTGCGTCTCCGTGTGGTTCACAGGCGCGTCTaGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTGACT +
Preference number: 4 (lower is better)
Translates to: LGLRLRVVHRRV*ARFSRSQPCLT
Trigger: AGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAGACGCGCCTGTGAACCACACGGAGACGCAACCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACACTCGAGTGGGCGGTaGAGCAGCGCTCACTGCCGG +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTHSSGR*SSAHCR
Trigger: CCGGCAGTGAGCGCTGCTCCACCGCCCACTCGAGTG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGCGCTGAAGTCACTGTaGAGCTTGCGAGCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRALKSL*SLRARL
Trigger: CAGCCTGGCTCGCAAGCTTCACAGTGACTTCAGCGC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAAGCTGGGCTTTTCGGTaGAGGCGGGTCATGCCTTGG +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSWAFR*RRVMPW
Trigger: CCAAGGCATGACCCGCCTCCACCGAAAAGCCCAGCT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGACGGCTCGTGATCCTGTaGTCATGTTCCTCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRRLVIL*SCSSPS
Trigger: GGAGGGAGAGGAACATGACCACAGGATCACGAGCCG...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATCTTCTCTCTTTTGCTaGAAGGCCTCACGCGCACCG +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSSLFC*KASRAP
Trigger: CGGTGCGCGTGAGGCCTTTCAGCAAAAGAGAGAAGA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATGCTTCTGTCCTCGATaGCTGGGAGGCAGAGTCACT +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRCFCPR*LGGRVT
Trigger: AGTGACTCTGCCTCCCAGGCATCGAGGACAGAAGCA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATGGTCTTCTAAGGCCTaGTTTGTGGCCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRWSSKA*FVARVS
Trigger: GGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGACCACCACCTCTGTCTTaGTCTGTGTCATCACCAGGG +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRPPPLS*SVSSPG
Trigger: CCCTGGTGATGACACAGACCAAGACAGAGGTGGTGG...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACTCATAGCTTCAGTCTaGCGCTGGGAACCCACAGGC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLIASV*RWEPTG
Trigger: GCCTGTGGGTTCCCAGCGTCAGACTGAAGCTATGAG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAAGCTGGGCTTTTCGGTaGAGGCAGGTCATGCCTTGG +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSWAFR*RQVMPW
Trigger: CCAAGGCATGACCTGCCTCCACCGAAAAGCCCAGCT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GAGACTCCAGTTCCTCACAGTCAGCACGAGGCAGTTCATTTCCGCAGCTGCCAGTCTTCTCTCTTTTGCTaGAAGGCCTCACGCGCACCG +
Preference number: 4 (lower is better)
Translates to: ETPVPHSQHEAVHFRSCQSSLFC*KASRAP
Trigger: CGGTGCGCGTGAGGCCTTTCAGCAAAAGAGAGAAGA...CTGGCAGCTGCGGAAATGAACTGCCTCGTGCTGACTGTGAGGAACTGGAGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATGCTTCTGTCCTCGATaGCTGGGAGGCAGAGTCACT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTCFCPR*LGGRVT
Trigger: AGTGACTCTGCCTCCCAGGCATCGAGGACAGAAGCA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGCTCTTCATGGGCTTTaGAGATGGCAATCACCCCAT +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRALHGL*RWQSPH
Trigger: ATGGGGTGATTGCCATCTCCAAAGCCCATGAAGAGC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACGGAGAGTGCAGATATaGCCTTCCCCAAAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTRRVQI*PSPKSA
Trigger: TGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATCCTTCGCCTTCAGCTaGGCATCTTTAATTTCTGCC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSFAFS*ASLISA
Trigger: GGCAGAAATTAAAGATGCGCAGCTGAAGGCGAAGGA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAACTTCCTGTTCAAGATaGTGCTTCGCCCTTTCCAAC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRTSCSR*CFALSN
Trigger: GTTGGAAAGGGCGAAGCAGCATCTTGAACAGGAAGT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTGCCTGGAGAGGTCCTaGCTGAGGTCTTGCGCGGTC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSCLERS*LRSCAV
Trigger: GACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAGGCAGAGTCACTTCCTaGGTTACCTCCCACAGGATT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTGRVTS*VTSHRI
Trigger: AATCCTGTGGGAGGTAACCCAGGAAGTGACTCTGCC...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TGCTTTGTGGCCAGGGTCTCCATCTCCAGTCGCCTTTTGTTCACGTACACTTCCAGCTGGGCTTTTCGGTaGAGGCAGGTCATGCCTTGG +
Preference number: 4 (lower is better)
Translates to: CFVARVSISSRLLFTYTSSWAFR*RQVMPW
Trigger: CCAAGGCATGACCTGCCTCCACCGAAAAGCCCAGCT...GGAAGTGTACGTGAACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAAGCACTCCAGACAACTaGATGTCATGGCTTGAGCTT +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSTPDN*MSWLEL
Trigger: AAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATCATCCTGCTCTTCATaGGCTTTGGAGATGGCAATC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSSCSS*ALEMAI
Trigger: GATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CTCCTCCTTCTAGAAAGGGAAGAAACTGGTGTGCTTGTAATGTCGGGCTCCCACAGCTGGGCTTTTCGGTaGAGGCGGGTCATGCCTTGG +
Preference number: 4 (lower is better)
Translates to: LLLLEREETGVLVMSGSHSWAFR*RRVMPW
Trigger: CCAAGGCATGACCCGCCTCCACCGAAAAGCCCAGCT...GTGGGAGCCCGACATTACAAGCACACCAGTTTCTTCCCTTTCTAGAAGGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp CGGTCCAGAAACAGGGTGCTCCCTCGCGCGCAGTGGTaGTTTCCTCTGCCCATTTTCACCTTTACAAACCAG +
Preference number: 4 (lower is better)
Translates to: RSRNRVLPRAQW*FPLPIFTFTNQ
Trigger: CTGGTTTGTAAAGGTGAAAATGGGCAGAGGAAACAACCACTGCGCGCGAGGGAGCACCCTGTTTCTGGACCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGAGTGTGCTTTCTCGTaGGCTTTCCCTTTTATTTGC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRECAFS*AFPFIC
Trigger: GCAAATAAAAGGGAAAGCTCACGAGAAAGCACACTC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAACCGCCACGGTCACCTaGCTGTTCTCTACTTTTAAG +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTTATVT*LFSTFK
Trigger: CTTAAAAGTAGAGAACAGTCAGGTGACCGTGGCGGT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATCCAATCTCTTCCTTTaGGACTCTTCCCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSNLFL*DSSLSS
Trigger: GGAGCTGAGGGAAGAGTCTCAAAGGAAGAGATTGGA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCCTGGAGAGCGGCCATaGACTCCTGGGTACTGGAGA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSPGERP*TPGYWR
Trigger: TCTCCAGTACCCAGGAGTTCATGGCCGCTCTCCAGG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGACTAGGGCCTGGATTTTaGGCTCATACACAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRLGPGF*AHTQLF
Trigger: AAAAAGCTGTGTATGAGCGCAAAATCCAGGCCCTAG...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATCCTGTTCAAGATGCTaGTTCGCCCTTTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSCSRC*FALSNS
Trigger: GGAGTTGGAAAGGGCGAAGCAGCATCTTGAACAGGA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATGCCTGGAGAGGTCCTaGCTGAGGTCTTGCGCGGTC +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSCLERS*LRSCAV
Trigger: GACCGCGCAAGACCTCAGGCAGGACCTCTCCAGGCA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACAGCCCTGTCTGACTTaGACTGCTCTTCCTTGCTAT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTQPCLT*TALPCY
Trigger: ATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCA +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILCRWPP*LSVYFP
Trigger: TGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAACACTCGAGTGGGCGGTaGAGCAGCGCTCACTGCCGG +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQHSSGR*SSAHCR
Trigger: CCGGCAGTGAGCGCTGCTCCACCGCCCACTCGAGTG...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATCGTGGAGAGTTTCATaGAGTTCCAGTTTGGCTGAA +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSWRVS*SSSLAE
Trigger: TTCAGCCAAACTGGAACTCCATGAAACTCTCCACGA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGACTTCCTGAATCATCGTaGAGAGTTTCATGGAGTTCC +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRLPESS*RVSWSS
Trigger: GGAACTCCATGAAACTCTCCACGATGATTCAGGAAG...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp TGGAGAGCGGCCATGAACTCCTGGGTACTGGAGACTTaGCTGCTGTTTTCCAGAACACAGAGCTTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: WRAAMNSWVLET*LLFSRTQSLLP
Trigger: AGGGAGCAAGCTCTGTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCCAGGAGTTCATGGCCGCTCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp CTTGGCCCGCTTTTCCCGCAGTCAGCCCTGTCTGACTaGCACTGCTCTTCCTTGCTATTCGAAGAACAAGAC +
Preference number: 4 (lower is better)
Translates to: LGPLFPQSALSD*HCSSLLFEEQD
Trigger: GTCTTGTTCTTCGAATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGCGGGAAAAGCGGGCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAACCACCCGATCACCATaGTGTAACACTGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILTTRSP*CNTVGS
Trigger: GGAGCCCACAGTGTTACATCATGGTGATCGGGTGGT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAAGGCAGAGTGTGCGCTaGAGTCACTGTGAAGCTTGC +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILRQSVR*SHCEAC
Trigger: GCAAGCTTCACAGTGACTTCAGCGCACACTCTGCCT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTGGAGCAGCGCTCACTaGCGGCCAGGTCCACAAGGT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDWSSAH*RPGPQG
Trigger: ACCTTGTGGACCTGGCCGGCAGTGAGCGCTGCTCCA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTACAGCTTCTGAGACAGTaGAAGTCACTGGGGCACCCT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILQLLRQ*KSLGHP
Trigger: AGGGTGCCCCAGTGACTTGCACTGTCTCAGAAGCTG...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGTTCATTTCCGCAGCTaGCAGCAGAGGCAGAGTGTG +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILVHFRS*QQRQSV
Trigger: CACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAAC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGAGATTGACAAGGTTTaGCAAGTGGTTGTCCATTTG +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHREIDKV*QVVVHL
Trigger: CAAATGGACAACCACTTGCCAAACCTTGTCAATCTC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACTTTGCTTCTCCAGCTaGGACAATACTCACTGTTCC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLCFSS*DNTHCS
Trigger: GGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATGTCCATCTGTGTTCTaGGACACATTTTACCGGGGT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTCPSVF*DTFYRG
Trigger: ACCCCGGTAAAATGTGTCCCAGAACACAGATGGACA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAACCACCCGATCACCATaGTGTAACACTGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQTTRSP*CNTVGS
Trigger: GGAGCCCACAGTGTTACATCATGGTGATCGGGTGGT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ATCTGCTTAGTGACCTCCTCTCGTGCACTCTGCCTGGAGAGGTCCTGCCTGAGGCCTAAGACTTGTGTCTaGTGTTCTTCTGTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: ICLVTSSRALCLERSCLRPKTCV*CSSVSQ
Trigger: TTGGGAAACAGAAGAACAGCAGACACAAGTCTTAGG...CCTCAGGCAGGACCTCTCCAGGCAGAGTGCACGAGAGGAGGTCACTAAGCAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAAGTGGTTGTTTCCTCTaGCCATTTTCACCTTTACAA +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSGCFL*PFSPLQ
Trigger: TTGTAAAGGTGAAAATGGGCAGAGGAAACAACCACT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGTTTACATATGTCTTTaGTTCTCCAGCTGGGACAAT +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRVYICL*FSSWDN
Trigger: ATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAAC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTGGTCTTCTAAGGCCTaGTTTGTGGCCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSWSSKA*FVARVS
Trigger: GGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCGTTCATTTCCGCAGCTaGCAGCAGAGGCAGAGTGTG +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSVHFRS*QQRQSV
Trigger: CACACTCTGCCTCTGCTGGCAGCTGCGGAAATGAAC...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACCACCACCTCTGTCTTaGTCTGTGTCATCACCAGGG +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQPPPLS*SVSSPG
Trigger: CCCTGGTGATGACACAGACCAAGACAGAGGTGGTGG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACGGCTCGTGATCCTGTaGTCATGTTCCTCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSRLVIL*SCSSPS
Trigger: GGAGGGAGAGGAACATGACCACAGGATCACGAGCCG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATCATACACAGCTTTTTaGGAAGAAAGTTCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: HGSADHGRECCSPISPHRSYTAF*EESSCW
Trigger: CCAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCTAAGGCCTGCTTTGTaGCCAGGGTCTCCATCTCCA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSLRPAL*PGSPSP
Trigger: TGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACTTCCTGAATCATCGTaGAGAGTTTCATGGAGTTCC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLPESS*RVSWSS
Trigger: GGAACTCCATGAAACTCTCCACGATGATTCAGGAAG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCTCATAGCTTCAGTCTaGCGCTGGGAACCCACAGGC +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLIASV*RWEPTG
Trigger: GCCTGTGGGTTCCCAGCGTCAGACTGAAGCTATGAG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAAATCATGGCTGTTTTTaGATTTCCACCCAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTNHGCF*ISTQAF
Trigger: GAAAGCCTGGGTGGAAATTCAAAAACAGCCATGATT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATCCTGTTCAAGATGCTaGTTCGCCCTTTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILSCSRC*FALSNS
Trigger: GGAGTTGGAAAGGGCGAAGCAGCATCTTGAACAGGA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAAGCCAATCAATTCTTTaGAAATCCCGGGAAGAAAGG +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSQSIL*KSREER
Trigger: CCTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACAGCTTCTGAGACAGTaGAAGTCACTGGGGCACCCT +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSQLLRQ*KSLGHP
Trigger: AGGGTGCCCCAGTGACTTGCACTGTCTCAGAAGCTG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATGGACGGTCTCCAAGTGCACAATGGTTTCATACCCACTGAATCCTATTCGGGGGGCAGAGTCACTTCCTaGGTTACCTCCCACAGGATT +
Preference number: 4 (lower is better)
Translates to: MDGLQVHNGFIPTESYSGGRVTS*VTSHRI
Trigger: AATCCTGTGGGAGGTAACCCAGGAAGTGACTCTGCC...CCCCGAATAGGATTCAGTGGGTATGAAACCATTGTGCACTTGGAGACCGTCCAT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAACCAACGGGAGGACCTaGGTCTTTGCATCTCGTCAA +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQTNGRT*VFASRQ
Trigger: TTGACGAGATGCAAAGACCCAGGTCCTCCCGTTGGT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GCTTGGGTGGCGTATCTGAGTGTGCTCAGCGTTTCCTCTATGTTGCTGGCAGCGTCCTGTTTTTCAGTGTaGATAAAGCTGGGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: AWVAYLSVLSVSSMLLAASCFSV*IKLGFS
Trigger: CGAAAAGCCCAGCTTTATCCACACTGAAAAACAGGA...CGCTGCCAGCAACATAGAGGAAACGCTGAGCACACTCAGATACGCCACCCAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCA +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDCRWPP*LSVYFP
Trigger: TGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACTAAGGCCTGCTTTGTaGCCAGGGTCTCCATCTCCA +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSLRPAL*PGSPSP
Trigger: TGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGCTCTTCATGGGCTTTaGAGATGGCAATCACCCCAT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILALHGL*RWQSPH
Trigger: ATGGGGTGATTGCCATCTCCAAAGCCCATGAAGAGC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAAGGCACAAGCAACCTaGATGGTAAGAGCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSKAQAT*MVRACA
Trigger: GGCACAGGCTCTTACCATCCAGGTTGCTTGTGCCTT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp TGGGCTCCGAGATGTGCGTCCCGTTTACATATGTCTTaGCTTCTCCAGCTGGGACAATACTCACTGTTCCTC +
Preference number: 4 (lower is better)
Translates to: WAPRCASRLHMS*LLQLGQYSLFL
Trigger: GAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCACATCTCGGAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp GACTCTTCCCTCAGCTCCGCCTCTAGGGCCTGGATTTaGCGCTCATACACAGCTTTTTGGGAAGAAAGTTCT +
Preference number: 4 (lower is better)
Translates to: DSSLSSASRAWI*RSYTAFWEESS
Trigger: AGAACTTTCTTCCCAAAAAGCTGTGTATGAGCGCAAAATCCAGGCCCTAGAGGCGGAGCTGAGGGAAGAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp TTGCATGTCGGATTCTATGGTCTTCTAAGGCCTGCTTaGTGGCCAGGGTCTCCATCTCCAGTCGCCTTTTGT +
Preference number: 4 (lower is better)
Translates to: LHVGFYGLLRPA*WPGSPSPVAFC
Trigger: ACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCAGGCCTTAGAAGACCATAGAATCCGACATGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp AAGAGCCTGTGCCGCCCGGTCAGAGAACAGGTTATCTaGACTTTCTTCATCCTGCTCTTCATGGGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: KSLCRPVREQVI*TFFILLFMGFG
Trigger: TCCAAAGCCCATGAAGAGCAGGATGAAGAAAGTCAAGATAACCTGTTCTCTGACCGGGCGGCACAGGCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATTCACGAATGGATCATaGTTCTCACACTCTGACATA +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTFTNGS*FSHSDI
Trigger: TATGTCAGAGTGTGAGAATCATGATCCATTCGTGAA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAACCGCCACGGTCACCTaGCTGTTCTCTACTTTTAAG +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQTATVT*LFSTFK
Trigger: CTTAAAAGTAGAGAACAGTCAGGTGACCGTGGCGGT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TCTCCTGCTGATGCAGCTTCATCCTTAAGGACGTTATCTCTTGCCGACAGAGTCACCGCCACGGTCACCTaGCTGTTCTCTACTTTTAAG +
Preference number: 4 (lower is better)
Translates to: SPADAASSLRTLSLADRVTATVT*LFSTFK
Trigger: CTTAAAAGTAGAGAACAGTCAGGTGACCGTGGCGGT...GACTCTGTCGGCAAGAGATAACGTCCTTAAGGATGAAGCTGCATCAGCAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATCTCTTCCCCATTGGTaGAGACAACCTGGGATGCTT +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQSLPHW*RQPGML
Trigger: AAGCATCCCAGGTTGTCTTCACCAATGGGGAAGAGA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TCTCCTGCTGATGCAGCTTCATCCTTAAGGACGTTATCTCTTGCCGACAGAGTCTCTCTTCCCCATTGGTaGAGACAACCTGGGATGCTT +
Preference number: 4 (lower is better)
Translates to: SPADAASSLRTLSLADRVSLPHW*RQPGML
Trigger: AAGCATCCCAGGTTGTCTTCACCAATGGGGAAGAGA...GACTCTGTCGGCAAGAGATAACGTCCTTAAGGATGAAGCTGCATCAGCAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAAAGTGGTTGTCCATTTaGAATGTAACTCCTGCTTTC +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTKWLSI*NVTPAF
Trigger: GAAAGCAGGAGTTACATTTCAAATGGACAACCACTT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATCCAATCTCTTCCTTTaGGACTCTTCCCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQSNLFL*DSSLSS
Trigger: GGAGCTGAGGGAAGAGTCTCAAAGGAAGAGATTGGA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCACCCAGCCAGTGTTTaGACAAAACCACAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSHPASV*TKPQAA
Trigger: AGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATTTAACTCGAGGGCTTaGAATCCTGTTTTTCAGTGT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTFNSRA*NPVFQC
Trigger: ACACTGAAAAACAGGATTGCAAGCCCTCGAGTTAAA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATGCTTGCTCGGAGAGTaGAGATATGACCTTCCCCAA +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQCLLGE*RYDLPQ
Trigger: TTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTGCTTGCTCGGAGAGTaGAGATATGACCTTCCCCAA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSCLLGE*RYDLPQ
Trigger: TTGGGGAAGGTCATATCTGCACTCTCCGAGCAAGCA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAGCTGGGCTTTTCGGTaGAGGCAGGTCATGCCTTGG +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSWAFR*RQVMPW
Trigger: CCAAGGCATGACCTGCCTCCACCGAAAAGCCCAGCT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATTCCGATTGCTTCTCTaGGCAGCTTTTAACTTTTCA +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTFRLLL*AAFNFS
Trigger: TGAAAAGTTAAAAGCTGCCCAGAGAAGCAATCGGAA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCGACAACTGGATGTCATaGCTTGAGCTTGGTGTGTGC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSDNWMS*LELGVC
Trigger: GCACACACCAAGCTCAAGCCATGACATCCAGTTGTC...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CTCCTCCTTCTAGAAAGGGAAGAAACTGGTGTGCTTGTAATGTCGGGCTCCCACTGTCCATCTGTGTTCTaGGACACATTTTACCGGGGT +
Preference number: 4 (lower is better)
Translates to: LLLLEREETGVLVMSGSHCPSVF*DTFYRG
Trigger: ACCCCGGTAAAATGTGTCCCAGAACACAGATGGACA...GTGGGAGCCCGACATTACAAGCACACCAGTTTCTTCCCTTTCTAGAAGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp AGTGCAGATATGACCTTCCCCAAAGTCAGCAAGGACTaGTTAATGCTCACACCTTCCTTCAGTCGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: SADMTFPKVSKD*LMLTPSFSRCP
Trigger: TGGGCAGCGACTGAAGGAAGGTGTGAGCATTAACAAGTCCTTGCTGACTTTGGGGAAGGTCATATCTGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp TCTCTGATCAACTTTGCATTCATGTCCTCGTTGACTTaGGCGATATTGACTATCAGGCGGGCTTGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: SLINFAFMSSLT*AILTIRRAWVA
Trigger: CGCCACCCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAATGCAAAGTTGATCAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp CTCCTCCTTCTAGAAAGGGAAGAAACTGGTGTGCTTGTAATGTCGGGCTCCCACGAGTGTGCTTTCTCGTaGGCTTTCCCTTTTATTTGC +
Preference number: 4 (lower is better)
Translates to: LLLLEREETGVLVMSGSHECAFS*AFPFIC
Trigger: GCAAATAAAAGGGAAAGCTCACGAGAAAGCACACTC...GTGGGAGCCCGACATTACAAGCACACCAGTTTCTTCCCTTTCTAGAAGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATCTTCTCTCTTTTGCTaGAAGGCCTCACGCGCACCG +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSSLFC*KASRAP
Trigger: CGGTGCGCGTGAGGCCTTTCAGCAAAAGAGAGAAGA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCGGAGAGTGCAGATATaGCCTTCCCCAAAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDRRVQI*PSPKSA
Trigger: TGCTGACTTTGGGGAAGGTCATATCTGCACTCTCCG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGCAGTCAGCCCTGTCTaGCTTGCACTGCTCTTCCTT +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQAVSPV*LALLFL
Trigger: AAGGAAGAGCAGTGCAAGTCAGACAGGGCTGACTGC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTACTCTCTGAATCTCTaGCATGTCTCTCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSYSLNL*HVSLLL
Trigger: CAGCAGGAGAGAGACATGGCAGAGATTCAGAGAGTA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCTTGAGCTTGGTGTGTaGTTTCCAACTGTGGTCACT +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSLELGV*FPTVVT
Trigger: AGTGACCACAGTTGGAAAGCACACACCAAGCTCAAG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATCCTTCGCCTTCAGCTaGGCATCTTTAATTTCTGCC +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQSFAFS*ASLISA
Trigger: GGCAGAAATTAAAGATGCGCAGCTGAAGGCGAAGGA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCTGGGCCATCTCCTTTaGGATCTGAATTCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSLGHLL*DLNSLH
Trigger: ATGCAAGGAATTCAGATCGCAAAGGAGATGGCCCAG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACTGGGCCATCTCCTTTaGGATCTGAATTCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQLGHLL*DLNSLH
Trigger: ATGCAAGGAATTCAGATCGCAAAGGAGATGGCCCAG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCACTTCCTGTTCAAGATaGTGCTTCGCCCTTTCCAAC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSTSCSR*CFALSN
Trigger: GTTGGAAAGGGCGAAGCAGCATCTTGAACAGGAAGT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCGGGTACTGGAGACTTTaGTGCTGTTTTCCAGAACAC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSGYWRL*CCFPEH
Trigger: GTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCC...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAGCAGAGGCAGAGTGTaGGCTGAAGTCACTGTGAAG +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSRGRV*AEVTVK
Trigger: CTTCACAGTGACTTCAGCGCACACTCTGCCTCTGCT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACAGCCCTGTCTGACTTaGACTGCTCTTCCTTGCTAT +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSQPCLT*TALPCY
Trigger: ATAGCAAGGAAGAGCAGTGCAAGTCAGACAGGGCTG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATACCAACGGGAGGACCTaGGTCTTTGCATCTCGTCAA +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDTNGRT*VFASRQ
Trigger: TTGACGAGATGCAAAGACCCAGGTCCTCCCGTTGGT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAATACAGTTGTCTGGCTaGCATAGCCAGGGTGACATT +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQIQLSG*HSQGDI
Trigger: AATGTCACCCTGGCTATGCCAGCCAGACAACTGTAT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATCTAGGAATTATTCCTaGTTCTTCATTAAGCCCCAT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSRNYS*FFIKPH
Trigger: ATGGGGCTTAATGAAGAACCAGGAATAATTCCTAGA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACTTTGCTTCTCCAGCTaGGACAATACTCACTGTTCC +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQLCFSS*DNTHCS
Trigger: GGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAAGGCACAAGCAACCTaGATGGTAAGAGCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDKAQAT*MVRACA
Trigger: GGCACAGGCTCTTACCATCCAGGTTGCTTGTGCCTT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp TCTACACCCAGCGAGAGGCCACACACAGGCATGGACTaGGAATATTTACACTCCTCTCTTTTTATGCTCTCC +
Preference number: 4 (lower is better)
Translates to: STPSERPHTGMD*EYLHSSLFMLS
Trigger: GGAGAGCATAAAAAGAGAGGAGTGTAAATATTCCAAGTCCATGCCTGTGTGTGGCCTCTCGCTGGGTGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp AACTTTGCATTCATGTCCTCGTTGACTTTGGCGATATaGACTATCAGGCGGGCTTGGGTGGCGTATCTGAGT +
Preference number: 4 (lower is better)
Translates to: NFAFMSSLTLAI*TIRRAWVAYLS
Trigger: ACTCAGATACGCCACCCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAATGCAAAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGAGTTCCAGTTTGGCTaGATGGTGAAAGTTTTATCC +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILEFQFG*MVKVLS
Trigger: GGATAAAACTTTCACCATTCAGCCAAACTGGAACTC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAATGGCATTGGCTTCCTaGATCATCGTGGAGAGTTTC +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSMALAS*IIVESF
Trigger: GAAACTCTCCACGATGATTCAGGAAGCCAATGCCAT...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGAGAACAGGTTATCTTaGCTTTCTTCATCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILENRLS*LSSSCS
Trigger: AGAGCAGGATGAAGAAAGTCAAGATAACCTGTTCTC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATACTCTCTGAATCTCTaGCATGTCTCTCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSYSLNL*HVSLLL
Trigger: CAGCAGGAGAGAGACATGGCAGAGATTCAGAGAGTA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACGCATCTTTAATTTCTaGCTCAAGCCGAGACCTCTG +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSRIFNF*LKPRPL
Trigger: CAGAGGTCTCGGCTTGAGGCAGAAATTAAAGATGCG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACTGATGCATCATGTCTaGCAAAAATATAGCACTTTT +
Preference number: 4 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLMHHV*QKYSTF
Trigger: AAAAGTGCTATATTTTTGGCAGACATGATGCATCAG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGTACTGGCTTTCATCTaGTTAGTGACCTCCTCTCGT +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSVLAFI*LVTSSR
Trigger: ACGAGAGGAGGTCACTAAGCAGATGAAAGCCAGTAC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAGCAGAGGCAGAGTGTaGGCTGAAGTCACTGTGAAG +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSRGRV*AEVTVK
Trigger: CTTCACAGTGACTTCAGCGCACACTCTGCCTCTGCT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGGCAGAGTCACTTCCTaGGTTACCTCCCACAGGATT +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQGRVTS*VTSHRI
Trigger: AATCCTGTGGGAGGTAACCCAGGAAGTGACTCTGCC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATCCTGTTTTTCAGTGTaGATAAAGCTGGGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILSCFSV*IKLGFS
Trigger: CGAAAAGCCCAGCTTTATCCACACTGAAAAACAGGA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATTGGTGAAGACAACCTaGGATGCTTTCTCAGTCTTC +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQLVKTT*DAFSVF
Trigger: GAAGACTGAGAAAGCATCCCAGGTTGTCTTCACCAA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp CTTCTGCTCCTCCTTCTAGAAAGGGAAGAAACTGGTGTGCTTGTAATGTCGGGCTTGGTGAAGACAACCTaGGATGCTTTCTCAGTCTTC +
Preference number: 4 (lower is better)
Translates to: LLLLLLEREETGVLVMSGLVKTT*DAFSVF
Trigger: GAAGACTGAGAAAGCATCCCAGGTTGTCTTCACCAA...GCCCGACATTACAAGCACACCAGTTTCTTCCCTTTCTAGAAGGAGGAGCAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAATACAGTTGTCTGGCTaGCATAGCCAGGGTGACATT +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSIQLSG*HSQGDI
Trigger: AATGTCACCCTGGCTATGCCAGCCAGACAACTGTAT...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATGTGCTTTCCAACTGTaGTCACTCCTTCCTTTACCA +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQCAFQL*SLLPLP
Trigger: TGGTAAAGGAAGGAGTGACCACAGTTGGAAAGCACA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTGTGCTTTCCAACTGTaGTCACTCCTTCCTTTACCA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSCAFQL*SLLPLP
Trigger: TGGTAAAGGAAGGAGTGACCACAGTTGGAAAGCACA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGTTGAGATCCCAAGCTaGAGGTTACGAACTCGAACA +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSVEIPS*RLRTRT
Trigger: TGTTCGAGTTCGTAACCTCCAGCTTGGGATCTCAAC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGAGTGTGCTTTCTCGTaGGCTTTCCCTTTTATTTGC +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSECAFS*AFPFIC
Trigger: GCAAATAAAAGGGAAAGCTCACGAGAAAGCACACTC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAATCATGGCTGTTTTTaGATTTCCACCCAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSNHGCF*ISTQAF
Trigger: GAAAGCCTGGGTGGAAATTCAAAAACAGCCATGATT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTACTGCTTTCAACTCTCTaGTCAACTTTGCATTCATGT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILLLSTL*STLHSC
Trigger: ACATGAATGCAAAGTTGATCAGAGAGTTGAAAGCAG...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTCCTTCCATACTCTCTaGATCTCTGCCATGTCTCTC +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSFHTL*ISAMSL
Trigger: GAGAGACATGGCAGAGATTCAGAGAGTATGGAAGGA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAATCTCCTTTGCGATCTaGATTCCTTGCATCATTTCT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILISFAI*IPCIIS
Trigger: AGAAATGATGCAAGGAATTCAGATCGCAAAGGAGAT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTTTCCCCGATTCTCCTaGAGCATTTGTACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSFPRFS*SICTSS
Trigger: TGAAGAAGTACAAATGCTTCAGGAGAATCGGGGAAA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAAGTTTGGCTGAATGGTaGAAGTTTTATCCCTGTTTC +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILSLAEW*KFYPCF
Trigger: GAAACAGGGATAAAACTTTCACCATTCAGCCAAACT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCCTAAGACTTGTGTCTaGTGTTCTTCTGTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSPKTCV*CSSVSQ
Trigger: TTGGGAAACAGAAGAACAGCAGACACAAGTCTTAGG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATTTAACTCGAGGGCTTaGAATCCTGTTTTTCAGTGT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILFNSRA*NPVFQC
Trigger: ACACTGAAAAACAGGATTGCAAGCCCTCGAGTTAAA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCGCATCTTTAATTTCTaGCTCAAGCCGAGACCTCTG +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDRIFNF*LKPRPL
Trigger: CAGAGGTCTCGGCTTGAGGCAGAAATTAAAGATGCG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAAGTGTGAAGACTGCATaGTCTGAATCGGATGGATGT +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSSVKTA*SESDGC
Trigger: ACATCCATCCGATTCAGAGCATGCAGTCTTCACACT...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAGCCAATCAATTCTTTaGAAATCCCGGGAAGAAAGG +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSSQSIL*KSREER
Trigger: CCTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGGGTACTGGAGACTTTaGTGCTGTTTTCCAGAACAC +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDGYWRL*CCFPEH
Trigger: GTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGACAACTGGATGTCATaGCTTGAGCTTGGTGTGTGC +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQDNWMS*LELGVC
Trigger: GCACACACCAAGCTCAAGCCATGACATCCAGTTGTC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAGCACTCCAGACAACTaGATGTCATGGCTTGAGCTT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSTPDN*MSWLEL
Trigger: AAGCTCAAGCCATGACATCCAGTTGTCTGGAGTGCT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp TACACTAATAGATTACTGGAGCTGCCGCCCACCGCATaGATGGATAAGAGCAATACGTTAGAAAAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: YTNRLLELPPTA*MDKSNTLEKPP
Trigger: TGGGGGCTTTTCTAACGTATTGCTCTTATCCATCAATGCGGTGGGCGGCAGCTCCAGTAATCTATTAGTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp GAGCCAGTACAAGGTAGAAAATCACCCAGCCAGTGTTaGAACAAAACCACAAGCTGCTCAAAGGCACAAGCA +
Preference number: 4 (lower is better)
Translates to: EPVQGRKSPSQC*NKTTSCSKAQA
Trigger: TGCTTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCTACCTTGTACTGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTTCACGAATGGATCATaGTTCTCACACTCTGACATA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSFTNGS*FSHSDI
Trigger: TATGTCAGAGTGTGAGAATCATGATCCATTCGTGAA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATCTGTAAAGGTCTTCTaGACTAGACTGTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: THGKSLTEPAQVTQAKILSVKVF*TRLFSS
Trigger: AGAAGAAAACAGTCTAGTTCAGAAGACCTTTACAGA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAAGTGGTTGTCCATTTaGAATGTAACTCCTGCTTTC +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQKWLSI*NVTPAF
Trigger: GAAAGCAGGAGTTACATTTCAAATGGACAACCACTT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAATGGCATTGGCTTCCTaGATCATCGTGGAGAGTTTC +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQMALAS*IIVESF
Trigger: GAAACTCTCCACGATGATTCAGGAAGCCAATGCCAT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAACTTGAGCTTGGTGTGTaGTTTCCAACTGTGGTCACT +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQLELGV*FPTVVT
Trigger: AGTGACCACAGTTGGAAAGCACACACCAAGCTCAAG...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAGTTTACATATGTCTTTaGTTCTCCAGCTGGGACAAT +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQVYICL*FSSWDN
Trigger: ATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAAC...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCTAGGGCCTGGATTTTaGGCTCATACACAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLGPGF*AHTQLF
Trigger: AAAAAGCTGTGTATGAGCGCAAAATCCAGGCCCTAG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAGTGTGAAGACTGCATaGTCTGAATCGGATGGATGT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSVKTA*SESDGC
Trigger: ACATCCATCCGATTCAGAGCATGCAGTCTTCACACT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATACTGGAGACTTTGCTaGTGTTTTCCAGAACACAGA +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSYWRLC*CFPEHR
Trigger: TCTGTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGTACTGGCTTTCATCTaGTTAGTGACCTCCTCTCGT +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQVLAFI*LVTSSR
Trigger: ACGAGAGGAGGTCACTAAGCAGATGAAAGCCAGTAC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTTGGTGAAGACAACCTaGGATGCTTTCTCAGTCTTC +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLVKTT*DAFSVF
Trigger: GAAGACTGAGAAAGCATCCCAGGTTGTCTTCACCAA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTTCCGATTGCTTCTCTaGGCAGCTTTTAACTTTTCA +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSFRLLL*AAFNFS
Trigger: TGAAAAGTTAAAAGCTGCCCAGAGAAGCAATCGGAA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGAGATTGACAAGGTTTaGCAAGTGGTTGTCCATTTG +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSEIDKV*QVVVHL
Trigger: CAAATGGACAACCACTTGCCAAACCTTGTCAATCTC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCCATGGAGTTCCAGTTTaGCTGAATGGTGAAAGTTTT +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSHGVPV*LNGESF
Trigger: AAAACTTTCACCATTCAGCCAAACTGGAACTCCATG...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGTTGAGATCCCAAGCTaGAGGTTACGAACTCGAACA +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQVEIPS*RLRTRT
Trigger: TGTTCGAGTTCGTAACCTCCAGCTTGGGATCTCAAC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATCATCCTGCTCTTCATaGGCTTTGGAGATGGCAATC +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSSCSS*ALEMAI
Trigger: GATTGCCATCTCCAAAGCCCATGAAGAGCAGGATGA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp TTCAACTCTCTGATCAACTTTGCATTCATGTCCTCGTaGACTTTGGCGATATTGACTATCAGGCGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: FNSLINFAFMSS*TLAILTIRRAW
Trigger: CCAAGCCCGCCTGATAGTCAATATCGCCAAAGTCAACGAGGACATGAATGCAAAGTTGATCAGAGAGTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp TTTGCGCTCATACACAGCTTTTTGGGAAGAAAGTTCTaGCTGGGCCATCTCCTTTGCGATCTGAATTCCTTG +
Preference number: 4 (lower is better)
Translates to: FALIHSFLGRKF*LGHLLCDLNSL
Trigger: CAAGGAATTCAGATCGCAAAGGAGATGGCCCAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGAGCGCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp CAGCTTGGAAACTTGTTGTCTAGAACCTTCTTGTGCTaGAGTTCTGAAGCTTTTCGTCCTCCATTCAGCGAC +
Preference number: 4 (lower is better)
Translates to: QLGNLLSRTFLC*SSEAFRPPFSD
Trigger: GTCGCTGAATGGAGGACGAAAAGCTTCAGAACTCAAGCACAAGAAGGTTCTAGACAACAAGTTTCCAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGCAATCACCCCATTATaGAGCCTAAGGAGATTATTT +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSAITPL*SLRRLF
Trigger: AAATAATCTCCTTAGGCTTCATAATGGGGTGATTGC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGAGAACAGGTTATCTTaGCTTTCTTCATCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDENRLS*LSSSCS
Trigger: AGAGCAGGATGAAGAAAGTCAAGATAACCTGTTCTC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTTCATGACTTTGTTTTaGGCCTCTTTAACCATCGAT +
Preference number: 4 (lower is better)
Translates to: YSSETSAQAIALRQMQSSFMTLF*ASLTID
Trigger: ATCGATGGTTAAAGAGGCTCAAAACAAAGTCATGAA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCCTAAGACTTGTGTCTaGTGTTCTTCTGTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDPKTCV*CSSVSQ
Trigger: TTGGGAAACAGAAGAACAGCAGACACAAGTCTTAGG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATCATACACAGCTTTTTaGGAAGAAAGTTCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSSYTAF*EESSCW
Trigger: CCAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATCGTGGAGAGTTTCATaGAGTTCCAGTTTGGCTGAA +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSWRVS*SSSLAE
Trigger: TTCAGCCAAACTGGAACTCCATGAAACTCTCCACGA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCTGCTTTCAACTCTCTaGTCAACTTTGCATTCATGT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLLSTL*STLHSC
Trigger: ACATGAATGCAAAGTTGATCAGAGAGTTGAAAGCAG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATATCTCCTTTGCGATCTaGATTCCTTGCATCATTTCT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDISFAI*IPCIIS
Trigger: AGAAATGATGCAAGGAATTCAGATCGCAAAGGAGAT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATTTCCCCGATTCTCCTaGAGCATTTGTACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQFPRFS*SICTSS
Trigger: TGAAGAAGTACAAATGCTTCAGGAGAATCGGGGAAA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATAGTTTGGCTGAATGGTaGAAGTTTTATCCCTGTTTC +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSLAEW*KFYPCF
Trigger: GAAACAGGGATAAAACTTTCACCATTCAGCCAAACT...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGCAATCACCCCATTATaGAGCCTAAGGAGATTATTT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDAITPL*SLRRLF
Trigger: AAATAATCTCCTTAGGCTTCATAATGGGGTGATTGC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACTGATGCATCATGTCTaGCAAAAATATAGCACTTTT +
Preference number: 4 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQLMHHV*QKYSTF
Trigger: AAAAGTGCTATATTTTTGGCAGACATGATGCATCAG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR GCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATACTGGAGACTTTGCTaGTGTTTTCCAGAACACAGA +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQYWRLC*CFPEHR
Trigger: TCTGTGTTCTGGAAAACAGCAGCAAAGTCTCCAGTA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATCCTGTTTTTCAGTGTaGATAAAGCTGGGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSCFSV*IKLGFS
Trigger: CGAAAAGCCCAGCTTTATCCACACTGAAAAACAGGA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CCA 90 bp ATGAAATATCCGAACAGCATCCCTGCAAAAACAATTGCAAATAGCCTCCGAGTTATACAGTTGTCTGGCTaGCATAGCCAGGGTGACATT +
Preference number: 4 (lower is better)
Translates to: MKYPNSIPAKTIANSLRVIQLSG*HSQGDI
Trigger: AATGTCACCCTGGCTATGCCAGCCAGACAACTGTAT...AACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGATGCTGTTCGGATATTTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp ACTCCTAGATATCCACAATTCACAGATCGACCAGCTTaGCCCTATCAATATGCCTCACCCAATGGGATATTA +
Preference number: 4 (lower is better)
Translates to: TPRYPQFTDRPA*PYQYASPNGIL
Trigger: TAATATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATATCTAGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
3UTR CAA 72 bp AGCTCTGAATATCAGAGTAAGAACTCACAACATTCATaGACAGGCCTTCAACATACGGTCCAGAAACAGGGT +
Preference number: 4 (lower is better)
Translates to: SSEYQSKNSQHS*TGLQHTVQKQG
Trigger: ACCCTGTTTCTGGACCGTATGTTGAAGGCCTGTCAATGAATGTTGTGAGTTCTTACTCTGATATTCAGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTCTGTAAAGGTCTTCTaGACTAGACTGTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSVKVF*TRLFSS
Trigger: AGAAGAAAACAGTCTAGTTCAGAAGACCTTTACAGA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp AGAAAATCACCCAGCCAGTGTTTGAACAAAACCACAAGCTGCTCAAAGGCACAATCTGTAAAGGTCTTCTaGACTAGACTGTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: RKSPSQCLNKTTSCSKAQSVKVF*TRLFSS
Trigger: AGAAGAAAACAGTCTAGTTCAGAAGACCTTTACAGA...TTGTGCCTTTGAGCAGCTTGTGGTTTTGTTCAAACACTGGCTGGGTGATTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATTCATGACTTTGTTTTaGGCCTCTTTAACCATCGAT +
Preference number: 4 (lower is better)
Translates to: ISTIHRSTSFALSICLTQFMTLF*ASLTID
Trigger: ATCGATGGTTAAAGAGGCTCAAAACAAAGTCATGAA...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR TCA 90 bp TACATATGTCTTTGCTTCTCCAGCTGGGACAATACTCACTGTTCCTCCAAAATTTTTCAAGATGGTAGCTaGCGTATAGGACTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: YICLCFSSWDNTHCSSKIFQDGS*RIGLSR
Trigger: TCTGGAAAGTCCTATACGTCAGCTACCATCTTGAAA...AATTTTGGAGGAACAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR GCA 90 bp TTTCCATTAATCCAGATGAGTGTGAAGACTGCATGCTCTGAATCGGATGGATGTTTTAACTCGAGGGCTTaGAATCCTGTTTTTCAGTGT +
Preference number: 4 (lower is better)
Translates to: FPLIQMSVKTACSESDGCFNSRA*NPVFQC
Trigger: ACACTGAAAAACAGGATTGCAAGCCCTCGAGTTAAA...ACATCCATCCGATTCAGAGCATGCAGTCTTCACACTCATCTGGATTAATGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp TTTTCTCTTCATCGAAACTCTGTCCGAGGAAATCTATaGATGAGCCAATCAATTCTTTGCAAATCCCGGGAA +
Preference number: 4 (lower is better)
Translates to: FSLHRNSVRGNL*MSQSILCKSRE
Trigger: TTCCCGGGATTTGCAAAGAATTGATTGGCTCATCAATAGATTTCCTCGGACAGAGTTTCGATGAAGAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR TCA 90 bp CTGATGAATTTGAGTAAATGGTGCTCGGTTTTTCCATTAATCCAGATGAGTGTGTTCACGAATGGATCATaGTTCTCACACTCTGACATA +
Preference number: 4 (lower is better)
Translates to: LMNLSKWCSVFPLIQMSVFTNGS*FSHSDI
Trigger: TATGTCAGAGTGTGAGAATCATGATCCATTCGTGAA...CACACTCATCTGGATTAATGGAAAAACCGAGCACCATTTACTCAAATTCATCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp TCTTTTGCTTTTCAATTTCTAAAGCTTCTAAGATCCTaGCATGTCGGATTCTATGGTCTTCTAAGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: SFAFQFLKLLRS*HVGFYGLLRPA
Trigger: AGCAGGCCTTAGAAGACCATAGAATCCGACATGCAAGGATCTTAGAAGCTTTAGAAATTGAAAAGCAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
3UTR CAA 72 bp CACTCATCCTTATATCAGTTACTGTGGAAACCAGTGTaGGTAGATATACTATTAAACACATCATGCTTCAAG +
Preference number: 4 (lower is better)
Translates to: HSSLYQLLWKPV*VDILLNTSCFK
Trigger: CTTGAAGCATGATGTGTTTAATAGTATATCTACCAACACTGGTTTCCACAGTAACTGATATAAGGATGAGTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGGAGGACCTGGGTCTTaGCATCTCGTCAACCCGGTG +
Preference number: 5 (lower is better)
Translates to: HGSADHGRECCSPISPHRGGPGS*HLVNPV
Trigger: CACCGGGTTGACGAGATGCAAAGACCCAGGTCCTCC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAACTGGGGTATCAGACTaGCTCTCGGTCAGTTGCACC +
Preference number: 5 (lower is better)
Translates to: HGSADHGRECCSPISPHRTGVSD*LSVSCT
Trigger: GGTGCAACTGACCGAGAGCAAGTCTGATACCCCAGT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAGAGGCAGGTCATGCCTaGGTGTCCATCTGTGTTCTG +
Preference number: 5 (lower is better)
Translates to: HGSADHGRECCSPISPHREAGHA*VSICVL
Trigger: CAGAACACAGATGGACACCAAGGCATGACCTGCCTC...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189413.7
CDS CCA 90 bp CAGAATGAGACCGGGAGCTTTTATCGTTCATGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCAGTTCCAGCCAGCTTGGTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: QNETGSFYRSCRWPP*LSVYFPVPASLVVS
Trigger: GGAAACAACCAAGCTGGCTGGAACTGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCATGAACGATAAAAGCTCCCGGTCTCATTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195274.3
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAAGCGTTTCCTCTATGTaGCTGGCAGCGGGACTGACG +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILSVSSM*LAAGLT
Trigger: CGTCAGTCCCGCTGCCAGCAACATAGAGGAAACGCT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATGTCATGGCTTGAGCTaGGTGTGTGCTTTCCAACTG +
Preference number: 5 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTCHGLS*VCAFQL
Trigger: CAGTTGGAAAGCACACACCAAGCTCAAGCCATGACA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATTGGGAAGAAAGTTCTaGCTGGGCCATCTCCTTTGC +
Preference number: 5 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLGRKF*LGHLLC
Trigger: GCAAAGGAGATGGCCCAGCAAGAACTTTCTTCCCAA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATCCAGAACACAGAGCTaGCTCCCTTTCAGAACAGCT +
Preference number: 5 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSRTQS*LPFRTA
Trigger: AGCTGTTCTGAAAGGGAGCAAGCTCTGTGTTCTGGA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS CCA 90 bp ACCCTTTGCTTCTGTCCTCGATGCCTGGGAGGCAGAGTCACTTCCTaGGTTACCTCCCACAGGATTCAATGTCTCCCACTTTCCCACATA +
Preference number: 5 (lower is better)
Translates to: TLCFCPRCLGGRVTS*VTSHRIQCLPLSHI
Trigger: TATGTGGGAAAGTGGGAGACATTGAATCCTGTGGGAGGTAACCCAGGAAGTGACTCTGCCTCCCAGGCATCGAGGACAGAAGCAAAGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCAGCGTTTCCTCTATGTaGCTGGCAGCGGGACTGACG +
Preference number: 5 (lower is better)
Translates to: YSSETSAQAIALRQMQSSSVSSM*LAAGLT
Trigger: CGTCAGTCCCGCTGCCAGCAACATAGAGGAAACGCT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGATCCCTGCAAAAACAATaGCAAATAGCCTCCGAGTTT +
Preference number: 5 (lower is better)
Translates to: HGSADHGRECCSPISPHRSLQKQ*QIASEF
Trigger: AAACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGA...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS GCA 90 bp TCTCACACTCTGACATATCTGCCTTCAAGTGCAGTTCCAGCCGGCTaGTGTGGACGAGGCCACTGGATGCTGAAATCTTCTGTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: SHTLTYLPSSAVPAG*CGRGHWMLKSSVKK
Trigger: CTTCTTCACAGAAGATTTCAGCATCCAGTGGCCTCGTCCACAGCAGCCGGCTGGAACTGCACTTGAAGGCAGATATGTCAGAGTGTGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS GCA 90 bp CAGGACACGGGTATCATTATTTACACCCTTTGCTTCTGTCCTCGATaGCTGGGAGGCAGAGTCACTTCCTGGGTTACCTCCCACAGGATT +
Preference number: 5 (lower is better)
Translates to: QDTGIIIYTLCFCPR*LGGRVTSWVTSHRI
Trigger: AATCCTGTGGGAGGTAACCCAGGAAGTGACTCTGCCTCCCAGGCATCGAGGACAGAAGCAAAGGGTGTAAATAATGATACCCGTGTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 90 bp CACTCTGACATATCTGCCTTCAAGTGCAGTTCCAGCCGGCTGCTGTaGACGAGGCCACTGGATGCTGAAATCTTCTGTGAAGAAGAAACC +
Preference number: 5 (lower is better)
Translates to: HSDISAFKCSSSRLL*TRPLDAEIFCEEET
Trigger: GGTTTCTTCTTCACAGAAGATTTCAGCATCCAGTGGCCTCGTCCACAGCAGCCGGCTGGAACTGCACTTGAAGGCAGATATGTCAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 90 bp GTCCTTAACTGTCACCTTTTCATTAGAGGCACCAACGGGAGGACCTaGGTCTTTGCATCTCGTCAACCCGGTGTCGTTGGAGTCTTTCAC +
Preference number: 5 (lower is better)
Translates to: VLNCHLFIRGTNGRT*VFASRQPGVVGVFH
Trigger: GTGAAAGACTCCAACGACACCGGGTTGACGAGATGCAAAGACCCAGGTCCTCCCGTTGGTGCCTCTAATGAAAAGGTGACAGTTAAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGGAGGACCTGGGTCTTaGCATCTCGTCAACCCGGTG +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDGGPGS*HLVNPV
Trigger: CACCGGGTTGACGAGATGCAAAGACCCAGGTCCTCC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCACTGGGGTATCAGACTaGCTCTCGGTCAGTTGCACC +
Preference number: 5 (lower is better)
Translates to: YSSETSAQAIALRQMQSSTGVSD*LSVSCT
Trigger: GGTGCAACTGACCGAGAGCAAGTCTGATACCCCAGT...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GGCTTGAGCTTGGTGTGTGCTTTCCAACTGTGGTCACTCCTTCCTTTACCATGTACTGGGGTATCAGACTaGCTCTCGGTCAGTTGCACC +
Preference number: 5 (lower is better)
Translates to: GLSLVCAFQLWSLLPLPCTGVSD*LSVSCT
Trigger: GGTGCAACTGACCGAGAGCAAGTCTGATACCCCAGT...ACATGGTAAAGGAAGGAGTGACCACAGTTGGAAAGCACACACCAAGCTCAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATCAGTCTTCTCTCTTTaGCTGAAAGGCCTCACGCGC +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILSVFSL*LKGLTR
Trigger: GCGCGTGAGGCCTTTCAGCAAAAGAGAGAAGACTGA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTCCACCACCTCTGTCTaGGTCTGTGTCATCACCAGG +
Preference number: 5 (lower is better)
Translates to: YSSETSAQAIALRQMQSSSTTSV*VCVITR
Trigger: CCTGGTGATGACACAGACCAAGACAGAGGTGGTGGA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp CACGGCTCAGCCGACCACGGGAGAGAGTGCTGCTCTCCTATCTCTCCCCATAGAATTCTCCTGAAGCATTaGTACTTCTTCAGCGATCTT +
Preference number: 5 (lower is better)
Translates to: HGSADHGRECCSPISPHRILLKH*YFFSDL
Trigger: AAGATCGCTGAAGAAGTACAAATGCTTCAGGAGAAT...TCTATGGGGAGAGATAGGAGAGCAGCACTCTCTCCCGTGGTCGGCTGAGCCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS TCA 90 bp TCGGTCAGTTGCACCACTAAGTGTCCTGATCTCATAGCTTCAGTCTaGCGCTGGGAACCCACAGGCGCTCTACTGTTTGTGTCCTTAACT +
Preference number: 5 (lower is better)
Translates to: SVSCTTKCPDLIASV*RWEPTGALLFVSLT
Trigger: AGTTAAGGACACAAACAGTAGAGCGCCTGTGGGTTCCCAGCGTCAGACTGAAGCTATGAGATCAGGACACTTAGTGGTGCAACTGACCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 90 bp TTCTCTCTTTTGCTGAAAGGCCTCACGCGCACCGCCACGGTCACCTaGCTGTTCTCTACTTTTAAGGAGTCTGGCTCTGTAAAGGTCTTC +
Preference number: 5 (lower is better)
Translates to: FSLLLKGLTRTATVT*LFSTFKESGSVKVF
Trigger: GAAGACCTTTACAGAGCCAGACTCCTTAAAAGTAGAGAACAGTCAGGTGACCGTGGCGGTGCGCGTGAGGCCTTTCAGCAAAAGAGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 90 bp TGTCCATCTGTGTTCTGGGACACATTTTACCGGGGTCCTCGATTCTaGGCTCGCGCTTCTGAATGTACTGCCATGTTTCGGGATGTCCTT +
Preference number: 5 (lower is better)
Translates to: CPSVFWDTFYRGPRF*ARASECTAMFRDVL
Trigger: AAGGACATCCCGAAACATGGCAGTACATTCAGAAGCGCGAGCTCAGAATCGAGGACCCCGGTAAAATGTGTCCCAGAACACAGATGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATCCACCACCTCTGTCTaGGTCTGTGTCATCACCAGG +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSSTTSV*VCVITR
Trigger: CCTGGTGATGACACAGACCAAGACAGAGGTGGTGGA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACAAGGACTCTGATGAATTaGAGTAAATGGTGCTCGGTT +
Preference number: 5 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTRTLMN*SKWCSV
Trigger: AACCGAGCACCATTTACTCAAATTCATCAGAGTCCT...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACATCCCTGCAAAAACAATaGCAAATAGCCTCCGAGTTT +
Preference number: 5 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTSLQKQ*QIASEF
Trigger: AAACTCGGAGGCTATTTGCAATTGTTTTTGCAGGGA...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TGCTTTGTGGCCAGGGTCTCCATCTCCAGTCGCCTTTTGTTCACGTACACTTCCGCAAAAAGAGAACTTTaGGGCCTCGGTTTAACTCGA +
Preference number: 5 (lower is better)
Translates to: CFVARVSISSRLLFTYTSAKREL*GLGLTR
Trigger: TCGAGTTAAACCGAGGCCCAAAAGTTCTCTTTTTGC...GGAAGTGTACGTGAACAAAAGGCGACTGGAGATGGAGACCCTGGCCACAAAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATCAGTCTTCTCTCTTTaGCTGAAAGGCCTCACGCGC +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSSVFSL*LKGLTR
Trigger: GCGCGTGAGGCCTTTCAGCAAAAGAGAGAAGACTGA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TGTGCGTCCCGTTTACATATGTCTTTGCTTCTCCAGCTGGGACAATACTCACTGTCAGTCTTCTCTCTTTaGCTGAAAGGCCTCACGCGC +
Preference number: 5 (lower is better)
Translates to: CASRLHMSLLLQLGQYSLSVFSL*LKGLTR
Trigger: GCGCGTGAGGCCTTTCAGCAAAAGAGAGAAGACTGA...CAGTGAGTATTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACGGGACGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAAAACCCTCTTTCCGTTaGCTTGCTCGGAGAGTGCAG +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSKPSFR*LARRVQ
Trigger: CTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTT...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAGGGTCAATGTTCCGATaGCTTCTCTGGGCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQGSMFR*LLWAAF
Trigger: AAAAGCTGCCCAGAGAAGCAATCGGAACATTGACCC...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATGTCATGGCTTGAGCTaGGTGTGTGCTTTCCAACTG +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQCHGLS*VCAFQL
Trigger: CAGTTGGAAAGCACACACCAAGCTCAAGCCATGACA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAACTGGATGTCATGGCTaGAGCTTGGTGTGTGCTTTC +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQTGCHG*SLVCAF
Trigger: GAAAGCACACACCAAGCTCAAGCCATGACATCCAGT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GACAAAGAGAAGCAACCTAGGTCCCACCAGGGCCCAGCAAGCCCCATGCTTACACTTCATGACTTTGTTTaGAGCCTCTTTAACCATCGA +
Preference number: 5 (lower is better)
Translates to: DKEKQPRSHQGPASPMLTLHDFV*SLFNHR
Trigger: TCGATGGTTAAAGAGGCTCAAAACAAAGTCATGAAG...TGTAAGCATGGGGCTTGCTGGGCCCTGGTGGGACCTAGGTTGCTTCTCTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTATGGGTACTGGAGACTTaGCTGCTGTTTTCCAGAACA +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILWVLET*LLFSRT
Trigger: TGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCCA...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATGGACGGTCTCCAAGTGCACAATGGTTTCATACCCACTGAATCCTATTCGGGGGTTATCTCTTCCCCATaGGTGAAGACAACCTGGGAT +
Preference number: 5 (lower is better)
Translates to: MDGLQVHNGFIPTESYSGVISSP*VKTTWD
Trigger: ATCCCAGGTTGTCTTCACCAATGGGGAAGAGATAAC...CCCCGAATAGGATTCAGTGGGTATGAAACCATTGTGCACTTGGAGACCGTCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAAAAGTCAGCAAGGACTaGTTAATGCTCACACCTTCC +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILKVSKD*LMLTPS
Trigger: GGAAGGTGTGAGCATTAACAAGTCCTTGCTGACTTT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAGGGTCAATGTTCCGATaGCTTCTCTGGGCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSGSMFR*LLWAAF
Trigger: AAAAGCTGCCCAGAGAAGCAATCGGAACATTGACCC...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAGGGTCTTCATTGAGATaGACAAGGTTTGGCAAGTGG +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQGSSLR*TRFGKW
Trigger: CCACTTGCCAAACCTTGTCAATCTCAATGAAGACCC...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCATTGGGAAGAAAGTTCTaGCTGGGCCATCTCCTTTGC +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSLGRKF*LGHLLC
Trigger: GCAAAGGAGATGGCCCAGCAAGAACTTTCTTCCCAA...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACTCCAATCTCTTCCTTaGAGACTCTTCCCTCAGCTC +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSLQSLP*RLFPQL
Trigger: GAGCTGAGGGAAGAGTCTCAAAGGAAGAGATTGGAG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAGAGCCAATCAATTCTTaGCAAATCCCGGGAAGAAAG +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILEPINS*QIPGRK
Trigger: CTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCTC...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAATGGGTACTGGAGACTTaGCTGCTGTTTTCCAGAACA +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQWVLET*LLFSRT
Trigger: TGTTCTGGAAAACAGCAGCAAAGTCTCCAGTACCCA...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACATTATTTACACCCTTaGCTTCTGTCCTCGATGCCT +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQHYLHP*LLSSMP
Trigger: AGGCATCGAGGACAGAAGCAAAGGGTGTAAATAATG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAATTTCACTGGGGTTCTaGTATCTGAGCTTCCAAATG +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILISLGF*YLSFQM
Trigger: CATTTGGAAGCTCAGATACAAGAACCCCAGTGAAAT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAAAGTCAGCAAGGACTaGTTAATGCTCACACCTTCC +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQKVSKD*LMLTPS
Trigger: GGAAGGTGTGAGCATTAACAAGTCCTTGCTGACTTT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAAACCCTCTTTCCGTTaGCTTGCTCGGAGAGTGCAG +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQKPSFR*LARRVQ
Trigger: CTGCACTCTCCGAGCAAGCAAACGGAAAGAGGGTTT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TACAGTTCAGAGACCTCTGCCCAGGCAATAGCACTTCGACAAATGCAGTCAAGCTGCGATCTGAATTCCTaGCATCATTTCTTCCTTCGC +
Preference number: 5 (lower is better)
Translates to: YSSETSAQAIALRQMQSSCDLNS*HHFFLR
Trigger: GCGAAGGAAGAAATGATGCAAGGAATTCAGATCGCA...GCTTGACTGCATTTGTCGAAGTGCTATTGCCTGGGCAGAGGTCTCTGAACTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCTCCAATCTCTTCCTTaGAGACTCTTCCCTCAGCTC +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLQSLP*RLFPQL
Trigger: GAGCTGAGGGAAGAGTCTCAAAGGAAGAGATTGGAG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACTCACGGGAAGTCCCTTACAGAACCTGCTCAGGTCACCCAGGCTAAGATACTAAGGACTCTGATGAATTaGAGTAAATGGTGCTCGGTT +
Preference number: 5 (lower is better)
Translates to: THGKSLTEPAQVTQAKILRTLMN*SKWCSV
Trigger: AACCGAGCACCATTTACTCAAATTCATCAGAGTCCT...TAGTATCTTAGCCTGGGTGACCTGAGCAGGTTCTGTAAGGGACTTCCCGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATTCCAGAACACAGAGCTaGCTCCCTTTCAGAACAGCT +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDSRTQS*LPFRTA
Trigger: AGCTGTTCTGAAAGGGAGCAAGCTCTGTGTTCTGGA...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS CCA 90 bp TGTCCAGGAGTGGTGCAGCTAGTGTCTCATATACAGTTGTCTGGCTaGCATAGCCAGGGTGACATTCATCAAAAGACCAAAAGGAAACAT +
Preference number: 5 (lower is better)
Translates to: CPGVVQLVSHIQLSG*HSQGDIHQKTKRKH
Trigger: ATGTTTCCTTTTGGTCTTTTGATGAATGTCACCCTGGCTATGCCAGCCAGACAACTGTATATGAGACACTAGCTGCACCACTCCTGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGTTATCTCTTCCCCATaGGTGAAGACAACCTGGGAT +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDVISSP*VKTTWD
Trigger: ATCCCAGGTTGTCTTCACCAATGGGGAAGAGATAAC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAACTCACAACATTCATaGACAGGCCTTCAACATACG +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQNSQHS*TGLQHT
Trigger: CGTATGTTGAAGGCCTGTCAATGAATGTTGTGAGTT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACAATCATGGCTGTTTTaGAATTTCCACCCAGGCTTT +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQQSWLF*NFHPGF
Trigger: AAAGCCTGGGTGGAAATTCAAAAACAGCCATGATTG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACTCATACACAGCTTTTaGGGAAGAAAGTTCTTGCTG +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQLIHSF*GRKFLL
Trigger: CAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGAG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAAAGAACCTTCTTGTGCTaGAGTTCTGAAGCTTTTCGT +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQRTFLC*SSEAFR
Trigger: ACGAAAAGCTTCAGAACTCAAGCACAAGAAGGTTCT...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACTTTTCCAGGCTCCAGAAAGTTGAGATCCCAAGCTGGAGGTTACGAACTCGAAATTTCACTGGGGTTCTaGTATCTGAGCTTCCAAATG +
Preference number: 5 (lower is better)
Translates to: TFPGSRKLRSQAGGYELEISLGF*YLSFQM
Trigger: CATTTGGAAGCTCAGATACAAGAACCCCAGTGAAAT...TTCGAGTTCGTAACCTCCAGCTTGGGATCTCAACTTTCTGGAGCCTGGAAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGCAAAAAGAGAACTTTaGGGCCTCGGTTTAACTCGA +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDAKREL*GLGLTR
Trigger: TCGAGTTAAACCGAGGCCCAAAAGTTCTCTTTTTGC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGTTATCTCTTCCCCATaGGTGAAGACAACCTGGGAT +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQVISSP*VKTTWD
Trigger: ATCCCAGGTTGTCTTCACCAATGGGGAAGAGATAAC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACAATCATGGCTGTTTTaGAATTTCCACCCAGGCTTT +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSQSWLF*NFHPGF
Trigger: AAAGCCTGGGTGGAAATTCAAAAACAGCCATGATTG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp GTTCTCCTATCACTTTCTCCATCCTCTACAGTTCAGAGACCTCTGCCCAGGCAACAAGTGGTTGTCCATTaGAAATGTAACTCCTGCTTT +
Preference number: 5 (lower is better)
Translates to: VLLSLSPSSTVQRPLPRQQVVVH*KCNSCF
Trigger: AAAGCAGGAGTTACATTTCAAATGGACAACCACTTG...TTGCCTGGGCAGAGGTCTCTGAACTGTAGAGGATGGAGAAAGTGATAGGAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAGGGTCTTCATTGAGATaGACAAGGTTTGGCAAGTGG +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQGSSLR*TRFGKW
Trigger: CCACTTGCCAAACCTTGTCAATCTCAATGAAGACCC...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAGCTGTGGGTCTTCATaGAGATTGACAAGGTTTGGC +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQSCGSS*RLTRFG
Trigger: GCCAAACCTTGTCAATCTCAATGAAGACCCACAGCT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCGTTTACATATGTCTTaGCTTCTCCAGCTGGGACAA +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDRLHMS*LLQLGQ
Trigger: TTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATGAGCCAATCAATTCTTaGCAAATCCCGGGAAGAAAG +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDEPINS*QIPGRK
Trigger: CTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCTC...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCAAGAGAACAGGTTATCTaGACTTTCTTCATCCTGCTC +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSREQVI*TFFILL
Trigger: GAGCAGGATGAAGAAAGTCAAGATAACCTGTTCTCT...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAACATTATTTACACCCTTaGCTTCTGTCCTCGATGCCT +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQHYLHP*LLSSMP
Trigger: AGGCATCGAGGACAGAAGCAAAGGGTGTAAATAATG...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp TTGAGTAAGTTCAAGGAAGCTCAGCGCTCAGGAAGAATCCTTCCGCGTACTTCACAAGTGGTTGTCCATTaGAAATGTAACTCCTGCTTT +
Preference number: 5 (lower is better)
Translates to: LSKFKEAQRSGRILPRTSQVVVH*KCNSCF
Trigger: AAAGCAGGAGTTACATTTCAAATGGACAACCACTTG...TGAAGTACGCGGAAGGATTCTTCCTGAGCGCTGAGCTTCCTTGAACTTACTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAACGTTTACATATGTCTTaGCTTCTCCAGCTGGGACAA +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQRLHMS*LLQLGQ
Trigger: TTGTCCCAGCTGGAGAAGCAAAGACATATGTAAACG...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp AGGCTTTCTTTTAATAGCCATGTAAGAGTGGATTCCCGATATGGAATAAAAACCGAGGCAGGTCATGCCTaGGTGTCCATCTGTGTTCTG +
Preference number: 5 (lower is better)
Translates to: RLSFNSHVRVDSRYGIKTEAGHA*VSICVL
Trigger: CAGAACACAGATGGACACCAAGGCATGACCTGCCTC...GGTTTTTATTCCATATCGGGAATCCACTCTTACATGGCTATTAAAAGAAAGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAATTTCACTGGGGTTCTaGTATCTGAGCTTCCAAATG +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQISLGF*YLSFQM
Trigger: CATTTGGAAGCTCAGATACAAGAACCCCAGTGAAAT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAACTCATACACAGCTTTTaGGGAAGAAAGTTCTTGCTG +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQLIHSF*GRKFLL
Trigger: CAGCAAGAACTTTCTTCCCAAAAAGCTGTGTATGAG...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAAGAGAACAGGTTATCTaGACTTTCTTCATCCTGCTC +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQREQVI*TFFILL
Trigger: GAGCAGGATGAAGAAAGTCAAGATAACCTGTTCTCT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS-3UTR CAA 90 bp ACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAATGGGATCTTCATGACTTTGTTTaGAGCCTCTTTAACCATCGA +
Preference number: 5 (lower is better)
Translates to: TIHRSTSFALSICLTQWDLHDFV*SLFNHR
Trigger: TCGATGGTTAAAGAGGCTCAAAACAAAGTCATGAAG...ATCCCATTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS TCA 90 bp CTATTTATGTCGATGGTTTTACTTCCAGCATTCACGAATGGATCATaGTTCTCACACTCTGACATATCTGCCTTCAAGTGCAGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: LFMSMVLLPAFTNGS*FSHSDISAFKCSSS
Trigger: GCTGGAACTGCACTTGAAGGCAGATATGTCAGAGTGTGAGAATCATGATCCATTCGTGAATGCTGGAAGTAAAACCATCGACATAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp TTGATGAGCCAATCAATTCTTTGCAAATCCCGGGAAGAAAGGACTCTGATGAATCATTATTTACACCCTTaGCTTCTGTCCTCGATGCCT +
Preference number: 5 (lower is better)
Translates to: LMSQSILCKSREERTLMNHYLHP*LLSSMP
Trigger: AGGCATCGAGGACAGAAGCAAAGGGTGTAAATAATG...ATTCATCAGAGTCCTTTCTTCCCGGGATTTGCAAAGAATTGATTGGCTCATCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201676.4
CDS-3UTR CAA 90 bp ATATCCACAATTCACAGATCGACCAGCTTTGCCCTATCAATATGCCTCACCCAAATTCTCCTGAAGCATTaGTACTTCTTCAGCGATCTT +
Preference number: 5 (lower is better)
Translates to: ISTIHRSTSFALSICLTQILLKH*YFFSDL
Trigger: AAGATCGCTGAAGAAGTACAAATGCTTCAGGAGAAT...TTGGGTGAGGCATATTGATAGGGCAAAGCTGGTCGATCTGTGAATTGTGGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
CDS CCA 72 bp GACCTGGGTCTTTGCATCTCGTCAACCCGGTGTCGTTaGAGTCTTTCACGGAGACGACAGACGACAGGACAC +
Preference number: 6 (lower is better)
Translates to: DLGLCISSTRCR*SLSRRRQTTGH
Trigger: GTGTCCTGTCGTCTGTCGTCTCCGTGAAAGACTCCAACGACACCGGGTTGACGAGATGCAAAGACCCAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 72 bp ACCGGGAGCTTTTATCGTTCATGCCGGTGGCCGCCGTaGCTCTCTGTTTATTTCCCAGTTCCAGCCAGCTTG +
Preference number: 6 (lower is better)
Translates to: TGSFYRSCRWPP*LSVYFPVPASL
Trigger: CAAGCTGGCTGGAACTGGGAAATAAACAGAGAGCCACGGCGGCCACCGGCATGAACGATAAAAGCTCCCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195274.3
CDS CAA 72 bp GGACCTGGGTCTTTGCATCTCGTCAACCCGGTGTCGTaGGAGTCTTTCACGGAGACGACAGACGACAGGACA +
Preference number: 6 (lower is better)
Translates to: GPGSLHLVNPVS*ESFTETTDDRT
Trigger: TGTCCTGTCGTCTGTCGTCTCCGTGAAAGACTCCAACGACACCGGGTTGACGAGATGCAAAGACCCAGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 72 bp TTGCTGAAAGGCCTCACGCGCACCGCCACGGTCACCTaGCTGTTCTCTACTTTTAAGGAGTCTGGCTCTGTA +
Preference number: 6 (lower is better)
Translates to: LLKGLTRTATVT*LFSTFKESGSV
Trigger: TACAGAGCCAGACTCCTTAAAAGTAGAGAACAGTCAGGTGACCGTGGCGGTGCGCGTGAGGCCTTTCAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 72 bp AGTGCAGTTCCAGCCGGCTGCTGTGGACGAGGCCACTaGATGCTGAAATCTTCTGTGAAGAAGAAACCTCCA +
Preference number: 6 (lower is better)
Translates to: SAVPAGCCGRGH*MLKSSVKKKPP
Trigger: TGGAGGTTTCTTCTTCACAGAAGATTTCAGCATCCAGTGGCCTCGTCCACAGCAGCCGGCTGGAACTGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 72 bp TTCTGTCCTCGATGCCTGGGAGGCAGAGTCACTTCCTaGGTTACCTCCCACAGGATTCAATGTCTCCCACTT +
Preference number: 6 (lower is better)
Translates to: FCPRCLGGRVTS*VTSHRIQCLPL
Trigger: AAGTGGGAGACATTGAATCCTGTGGGAGGTAACCCAGGAAGTGACTCTGCCTCCCAGGCATCGAGGACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 72 bp TGTCACCTTTTCATTAGAGGCACCAACGGGAGGACCTaGGTCTTTGCATCTCGTCAACCCGGTGTCGTTGGA +
Preference number: 6 (lower is better)
Translates to: CHLFIRGTNGRT*VFASRQPGVVG
Trigger: TCCAACGACACCGGGTTGACGAGATGCAAAGACCCAGGTCCTCCCGTTGGTGCCTCTAATGAAAAGGTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CAA 90 bp CTCGCGCTTCTGAATGTACTGCCATGTTTCGGGATGTCCTTCCCATaGTTTTTCGGTGTGGATAAAGCTGGGCTTTTCGGTGGAGGCGGG +
Preference number: 6 (lower is better)
Translates to: LALLNVLPCFGMSFP*FFGVDKAGLFGGGG
Trigger: CCCGCCTCCACCGAAAAGCCCAGCTTTATCCACACCGAAAAACAATGGGAAGGACATCCCGAAACATGGCAGTACATTCAGAAGCGCGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 72 bp TGCACCACTAAGTGTCCTGATCTCATAGCTTCAGTCTaGCGCTGGGAACCCACAGGCGCTCTACTGTTTGTG +
Preference number: 6 (lower is better)
Translates to: CTTKCPDLIASV*RWEPTGALLFV
Trigger: CACAAACAGTAGAGCGCCTGTGGGTTCCCAGCGTCAGACTGAAGCTATGAGATCAGGACACTTAGTGGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CAA 72 bp CAGACGACAGGACACGGGTATCATTATTTACACCCTTaGCTTCTGTCCTCGATGCCTGGGAGGCAGAGTCAC +
Preference number: 6 (lower is better)
Translates to: QTTGHGYHYLHP*LLSSMPGRQSH
Trigger: GTGACTCTGCCTCCCAGGCATCGAGGACAGAAGCAAAGGGTGTAAATAATGATACCCGTGTCCTGTCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 72 bp ATTTTACCGGGGTCCTCGATTCTGAGCTCGCGCTTCTaGATGTACTGCCATGTTTCGGGATGTCCTTCCCAT +
Preference number: 6 (lower is better)
Translates to: ILPGSSILSSRF*MYCHVSGCPSH
Trigger: ATGGGAAGGACATCCCGAAACATGGCAGTACATTCAGAAGCGCGAGCTCAGAATCGAGGACCCCGGTAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS GCA 72 bp AGACGACAGGACACGGGTATCATTATTTACACCCTTTaGTTCTGTCCTCGATGCCTGGGAGGCAGAGTCACT +
Preference number: 6 (lower is better)
Translates to: RRQDTGIIIYTL*FCPRCLGGRVT
Trigger: AGTGACTCTGCCTCCCAGGCATCGAGGACAGAAGCAAAGGGTGTAAATAATGATACCCGTGTCCTGTCGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS GCA 72 bp GTGGATAAAGCTGGGCTTTTCGGTGGAGGCAGGTCATaGCTTGGTGTCCATCTGTGTTCTGGGACACATTTT +
Preference number: 6 (lower is better)
Translates to: VDKAGLFGGGRS*LGVHLCSGTHF
Trigger: AAAATGTGTCCCAGAACACAGATGGACACCAAGGCATGACCTGCCTCCACCGAAAAGCCCAGCTTTATCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CAA 72 bp ATAAAGCTGGGCTTTTCGGTGGAGGCAGGTCATGCCTaGGTGTCCATCTGTGTTCTGGGACACATTTTACCG +
Preference number: 6 (lower is better)
Translates to: IKLGFSVEAGHA*VSICVLGHILP
Trigger: CGGTAAAATGTGTCCCAGAACACAGATGGACACCAAGGCATGACCTGCCTCCACCGAAAAGCCCAGCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CAA 72 bp TGTGAGTTTCTTCCTCCTGACACTGGGGTATCAGACTaGCTCTCGGTCAGTTGCACCACTAAGTGTCCTGAT +
Preference number: 6 (lower is better)
Translates to: CEFLPPDTGVSD*LSVSCTTKCPD
Trigger: ATCAGGACACTTAGTGGTGCAACTGACCGAGAGCAAGTCTGATACCCCAGTGTCAGGAGGAAGAAACTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 72 bp TATCGGGATGCTCCACAGTTATCTCTTCCCCATTGGTaGAGACAACCTGGGATGCTTTCTCAGTCTTCTCTC +
Preference number: 6 (lower is better)
Translates to: YRDAPQLSLPHW*RQPGMLSQSSL
Trigger: GAGAGAAGACTGAGAAAGCATCCCAGGTTGTCTTCACCAATGGGGAAGAGATAACTGTGGAGCATCCCGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CAA 90 bp CAAAAGCTCTGTCCAGGAGTGGTGCAGCTAGTGTCTCATATACAGTaGTCTGGCTGGCATAGCCAGGGTGACATTCATCAAAAGACCAAA +
Preference number: 6 (lower is better)
Translates to: QKLCPGVVQLVSHIQ*SGWHSQGDIHQKTK
Trigger: TTTGGTCTTTTGATGAATGTCACCCTGGCTATGCCAGCCAGACAACTGTATATGAGACACTAGCTGCACCACTCCTGGACAGAGCTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 72 bp GTGGTGCAGCTAGTGTCTCATATACAGTTGTCTGGCTaGCATAGCCAGGGTGACATTCATCAAAAGACCAAA +
Preference number: 6 (lower is better)
Translates to: VVQLVSHIQLSG*HSQGDIHQKTK
Trigger: TTTGGTCTTTTGATGAATGTCACCCTGGCTATGCCAGCCAGACAACTGTATATGAGACACTAGCTGCACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CAA 72 bp CTGAATGTACTGCCATGTTTCGGGATGTCCTTCCCATaGTTTTTCGGTGTGGATAAAGCTGGGCTTTTCGGT +
Preference number: 6 (lower is better)
Translates to: LNVLPCFGMSFP*FFGVDKAGLFG
Trigger: ACCGAAAAGCCCAGCTTTATCCACACCGAAAAACAATGGGAAGGACATCCCGAAACATGGCAGTACATTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS TCA 72 bp TCGATGGTTTTACTTCCAGCATTCACGAATGGATCATaGTTCTCACACTCTGACATATCTGCCTTCAAGTGC +
Preference number: 6 (lower is better)
Translates to: SMVLLPAFTNGS*FSHSDISAFKC
Trigger: GCACTTGAAGGCAGATATGTCAGAGTGTGAGAATCATGATCCATTCGTGAATGCTGGAAGTAAAACCATCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7
ENSMUST00000201676.4
CDS CCA 72 bp AGCAAAGAGATCTTCACAGAATCTAGGAATTATTCCTaGTTCTTCATTAAGCCCCATCATCGTATAGGACTT +
Preference number: 6 (lower is better)
Translates to: SKEIFTESRNYS*FFIKPHHRIGL
Trigger: AAGTCCTATACGATGATGGGGCTTAATGAAGAACCAGGAATAATTCCTAGATTCTGTGAAGATCTCTTTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047817.12
ENSMUST00000189413.7