RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KIF13A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021375

Ensembl transcript IDs: ENSMUST00000056978.8, ENSMUST00000223856.2, ENSMUST00000223881.2, ENSMUST00000224756.2, ENSMUST00000225591.2, ENSMUST00000225836.2, ENSMUST00000238722.2

Found 456 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAAGAAGCCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTaGGTTGTGTGCAGTAACACTTCCCTGTGCACTCCACCTGCTTGG +
Preference number: 1 (lower is better)
Translates to: KEAASKAVPQLLVHR*VVCSNTSLCTPPAW
Trigger: CCAAGCAGGTGGAGTGCACAGGGAAGTGTTACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGGCTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 90 bp AGATTCTCTTCCTTTCTGGAAAGAGCAGGGAGCTGTGATTCGCCATaGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTGCAGGG +
Preference number: 1 (lower is better)
Translates to: RFSSFLERAGSCDSP*NKVLLLPLGRGSAG
Trigger: CCCTGCACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCTCCCTGCTCTTTCCAGAAAGGAAGAGAATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 90 bp AATAGACTGATAAAGAAGCCGCCAGCAAGGCTGTACCCCAACTCTTaGTACATCGCTGCGTTGTGTGCAGTAACACTTCCCTGTGCACTC +
Preference number: 1 (lower is better)
Translates to: NRLIKKPPARLYPNS*YIAALCAVTLPCAL
Trigger: GAGTGCACAGGGAAGTGTTACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGGCTTCTTTATCAGTCTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR GCA 90 bp GAGTCTGTGGAGGTCTTTGCACAGAGGGGGCTTGTACGAAAATACTaGCACGTAGGTAAGCCGAGATTCTCTTCCTTTCTGGAAAGAGCA +
Preference number: 1 (lower is better)
Translates to: ESVEVFAQRGLVRKY*HVGKPRFSSFLERA
Trigger: TGCTCTTTCCAGAAAGGAAGAGAATCTCGGCTTACCTACGTGGCAGTATTTTCGTACAAGCCCCCTCTGTGCAAAGACCTCCACAGACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR TCA 90 bp TCAGGCAAAAACAGCAAACCCACACCACAAGAGAATCTAGCGACCTaGAATAGACTGATAAAGAAGCCGCCAGCAAGGCTGTACCCCAAC +
Preference number: 1 (lower is better)
Translates to: SGKNSKPTPQENLAT*NRLIKKPPARLYPN
Trigger: GTTGGGGTACAGCCTTGCTGGCGGCTTCTTTATCAGTCTATTTCAGGTCGCTAGATTCTCTTGTGGTGTGGGTTTGCTGTTTTTGCCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 90 bp AGGGCAGCACGTGGCTTGGTAGCCAAGGGAAGTATGGCACCAGATTaGAGTGAGATTATATACTCACACAAAACAAGAGTGGACAGCAAA +
Preference number: 1 (lower is better)
Translates to: RAARGLVAKGSMAPD*SEIIYSHKTRVDSK
Trigger: TTTGCTGTCCACTCTTGTTTTGTGTGAGTATATAATCTCACTCCAATCTGGTGCCATACTTCCCTTGGCTACCAAGCCACGTGCTGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTAGGGCTCCCCTATGCTaGTCTGAGGTCGAGCTGGGT +
Preference number: 2 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSRAPLC*SEVELG
Trigger: ACCCAGCTCGACCTCAGACCAGCATAGGGGAGCCCT...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTGCTGCTTCTCCCACTaGGGAGGGGAAGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGCCFSH*GGEVQG
Trigger: GCCCTGCACTTCCCCTCCCCAGTGGGAGAAGCAGCA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACATGGAACAAAGTGCTaGTTCTCCCACTGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: PPARLYPNSWYIAALCAVHGTKC*FSHWGG
Trigger: CCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCGCCATGGAACAAAGTaGTGCTTCTCCCACTGGGGA +
Preference number: 2 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGRHGTK*CFSHWG
Trigger: TCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCG...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTTGCTGCTTCTCCCACTaGGGAGGGGAAGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: VNIESVGTRLCGRLKVTACCFSH*GGEVQG
Trigger: GCCCTGCACTTCCCCTCCCCAGTGGGAGAAGCAGCA...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAAGCTGTGATTCGCCATaGAACAAAGTGCTGCTTCTC +
Preference number: 2 (lower is better)
Translates to: PPARLYPNSWYIAALCAVSCDSP*NKVLLL
Trigger: GAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGATTGATGAACGAAGCTaGCAAGCTGTGACCTGGAGA +
Preference number: 2 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQIDERS*QAVTWR
Trigger: TCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAAT...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGATTGATGAACGAAGCTaGCAAGCTGTGACCTGGAGA +
Preference number: 2 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGIDERS*QAVTWR
Trigger: TCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAAT...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAATTGATGAACGAAGCTaGCAAGCTGTGACCTGGAGA +
Preference number: 2 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQIDERS*QAVTWR
Trigger: TCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAAT...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
3UTR-3UTR TCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCAAGAGATCAGAGCACTaGCTCCAGAGTCTGCGGGAA +
Preference number: 2 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLKRSEH*LQSLRE
Trigger: TTCCCGCAGACTCTGGAGTCAGTGCTCTGATCTCTT...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTACCAAGGGCAGCACGTaGCTTGGTAGCCAAGGGAAG +
Preference number: 2 (lower is better)
Translates to: ELKNQKSTADCTHALSLPTKGST*LGSQGK
Trigger: CTTCCCTTGGCTACCAAGCCACGTGCTGCCCTTGGT...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTCATGGAACAAAGTGCTaGTTCTCCCACTGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: ELKNQKSTADCTHALSLPHGTKC*FSHWGG
Trigger: CCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATG...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGACAAATCATCTATCTaGCTTTCAGTGTGCAGATAT +
Preference number: 2 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQDKSSI*LSVCRY
Trigger: ATATCTGCACACTGAAAGGCAGATAGATGATTTGTC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCAGGTACCAGGCTATGTaGAAGACTGAAGGTTACAGC +
Preference number: 2 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLRYQAM*KTEGYS
Trigger: GCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCT...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR GCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTAGTAACACTTCCCTGTaGACTCCACCTGCTTGGATA +
Preference number: 2 (lower is better)
Translates to: GQLTIHTNSSLSRESPISSNTSL*TPPAWI
Trigger: TATCCAAGCAGGTGGAGTGCACAGGGAAGTGTTACT...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTGATTCTCTTCCTTTCTaGAAAGAGCAGGGAGCTGTG +
Preference number: 2 (lower is better)
Translates to: GQLTIHTNSSLSRESPISDSLPF*KEQGAV
Trigger: CACAGCTCCCTGCTCTTTCCAGAAAGGAAGAGAATC...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCCACACAAAACAAGAGTaGACAGCAAAGACGTTCAGT +
Preference number: 2 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLHTKQE*TAKTFS
Trigger: ACTGAACGTCTTTGCTGTCCACTCTTGTTTTGTGTG...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR TCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTGGCACCAGATTGGAGTaGGATTATATACTCACACAA +
Preference number: 2 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAGTRLE*DYILTQ
Trigger: TTGTGTGAGTATATAATCTCACTCCAATCTGGTGCC...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR TCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTGTACCTTGGGATTTTTaGCAAATCATCTATCTGCCT +
Preference number: 2 (lower is better)
Translates to: GQLTIHTNSSLSRESPISVPWDF*QIIYLP
Trigger: AGGCAGATAGATGATTTGTCAAAAATCCCAAGGTAC...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CAA 90 bp AGTCAACTGGGTCACTTTGTAACAAAGTCCAGTACCTTGGGATTTTaGACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCG +
Preference number: 2 (lower is better)
Translates to: SQLGHFVTKSSTLGF*TNHLSAFQCADMSP
Trigger: CGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGTCAAAAATCCCAAGGTACTGGACTTTGTTACAAAGTGACCCAGTTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CAA 90 bp TGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCAGTACCTaGGGATTTTTGACAAATCATCTATCTGCCTTTCAGTGTGCAGAT +
Preference number: 2 (lower is better)
Translates to: CQSSQLGHFVTKSST*GFLTNHLSAFQCAD
Trigger: ATCTGCACACTGAAAGGCAGATAGATGATTTGTCAAAAATCCCAAGGTACTGGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CAA 90 bp AAAACAAGAGTGGACAGCAAAGACGTTCAGTCTCCTGGAAGTTCTTaGGTTATAAAGAACAGTGCCTGTAACCTTTTCTATAGAGAGGGA +
Preference number: 2 (lower is better)
Translates to: KTRVDSKDVQSPGSS*VIKNSACNLFYREG
Trigger: TCCCTCTCTATAGAAAAGGTTACAGGCACTGTTCTTTATAACCAAAGAACTTCCAGGAGACTGAACGTCTTTGCTGTCCACTCTTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR TCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCCTTGCAGGATACTTTaGAAACCAAAACGGGGGAAA +
Preference number: 2 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSPCRIL*KPKRGK
Trigger: TTTCCCCCGTTTTGGTTTTCAAAGTATCCTGCAAGG...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 72 bp GTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTaGGGAGGGGAAGTGCAGGGCTCCCCTATGCTGGTC +
Preference number: 3 (lower is better)
Translates to: VIRHGTKCCFSH*GGEVQGSPMLV
Trigger: GACCAGCATAGGGGAGCCCTGCACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGTGTCCCAGGGTGGGATaGATGAACGAAGCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMCPRVG*MNEAAK
Trigger: CTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACA...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
3UTR TCA 72 bp TATGCTGGTCTGAGGTCGAGCTGGGTCACAGCTGTCTaGAGATGGAGCATGGACTGTCCCAGGGTGGGATTG +
Preference number: 3 (lower is better)
Translates to: YAGLRSSWVTAV*RWSMDCPRVGL
Trigger: CAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAGACAGCTGTGACCCAGCTCGACCTCAGACCAGCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR GCA 72 bp GCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTaGGTTGTGTGCAGTAACACTTCCCTGTGCACTCCA +
Preference number: 3 (lower is better)
Translates to: ASKAVPQLLVHR*VVCSNTSLCTP
Trigger: TGGAGTGCACAGGGAAGTGTTACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTGTCCCAGGGTGGGATaGATGAACGAAGCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGCPRVG*MNEAAK
Trigger: CTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATGTCCCAGGGTGGGATaGATGAACGAAGCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQCPRVG*MNEAAK
Trigger: CTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
3UTR GCA 72 bp GTACATCGCTGCGTTGTGTGCAGTAACACTTCCCTGTaGACTCCACCTGCTTGGATAGGTGGACAGGATGTG +
Preference number: 3 (lower is better)
Translates to: VHRCVVCSNTSL*TPPAWIGGQDV
Trigger: CACATCCTGTCCACCTATCCAAGCAGGTGGAGTGCACAGGGAAGTGTTACTGCACACAACGCAGCGATGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 72 bp ATAAAGAAGCCGCCAGCAAGGCTGTACCCCAACTCTTaGTACATCGCTGCGTTGTGTGCAGTAACACTTCCC +
Preference number: 3 (lower is better)
Translates to: IKKPPARLYPNS*YIAALCAVTLP
Trigger: GGGAAGTGTTACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGGCTTCTTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCAGTCTGTGGAGGTCTTaGCACAGAGGGGGCTTGTAC +
Preference number: 3 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSSLWRS*HRGGLY
Trigger: GTACAAGCCCCCTCTGTGCAAAGACCTCCACAGACT...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTAGTCTGTGGAGGTCTTaGCACAGAGGGGGCTTGTAC +
Preference number: 3 (lower is better)
Translates to: VNIESVGTRLCGRLKVTASLWRS*HRGGLY
Trigger: GTACAAGCCCCCTCTGTGCAAAGACCTCCACAGACT...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCCTACAGTGTCTCTCCTaGCAGGATACTTTGAAAACC +
Preference number: 3 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLLQCLS*QDTLKT
Trigger: GGTTTTCAAAGTATCCTGCAAGGAGAGACACTGTAG...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 72 bp AGTGGTCAATATCGAGTCAGTAGGTACCAGGCTATGTaGAAGACTGAAGGTTACAGCTGTGCGATTTCTCAG +
Preference number: 3 (lower is better)
Translates to: SGQYRVSRYQAM*KTEGYSCAISQ
Trigger: CTGAGAAATCGCACAGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGACCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 72 bp CGTGGCTTGGTAGCCAAGGGAAGTATGGCACCAGATTaGAGTGAGATTATATACTCACACAAAACAAGAGTG +
Preference number: 3 (lower is better)
Translates to: RGLVAKGSMAPD*SEIIYSHKTRV
Trigger: CACTCTTGTTTTGTGTGAGTATATAATCTCACTCCAATCTGGTGCCATACTTCCCTTGGCTACCAAGCCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR-3UTR CAA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTTCTCCTGGAAGTTCTTaGGTTATAAAGAACAGTGCC +
Preference number: 3 (lower is better)
Translates to: GQLTIHTNSSLSRESPISSPGSS*VIKNSA
Trigger: GGCACTGTTCTTTATAACCAAAGAACTTCCAGGAGA...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR GCA 72 bp GGGATTTTTGACAAATCATCTATCTGCCTTTCAGTGTaGAGATATGTCTCCGGACAGACATACCGTAGATAC +
Preference number: 3 (lower is better)
Translates to: GIFDKSSICLSV*RYVSGQTYRRY
Trigger: GTATCTACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGTCAAAAATCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CCA 72 bp ATTGGAGTGAGATTATATACTCACACAAAACAAGAGTaGACAGCAAAGACGTTCAGTCTCCTGGAAGTTCTT +
Preference number: 3 (lower is better)
Translates to: IGVRLYTHTKQE*TAKTFSLLEVL
Trigger: AAGAACTTCCAGGAGACTGAACGTCTTTGCTGTCCACTCTTGTTTTGTGTGAGTATATAATCTCACTCCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGCGCGTCACCTCCACATaGAGGCGCCCGGCAACCTCC +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQRVTST*RRPATS
Trigger: GGAGGTTGCCGGGCGCCTCCATGTGGAGGTGACGCG...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTATCCTCAGGGATGCTCTaGGGTGACGGGGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVSSGML*GDGVPL
Trigger: CAAGGGGACCCCGTCACCCCAGAGCATCCCTGAGGA...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGCACTGGGTCACCTTCTaGTGGGCTGTCTGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMHWVTF*WAVWLL
Trigger: CAGCAGCCAGACAGCCCAGCAGAAGGTGACCCAGTG...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTTCACCGTGACAGCCTaGCGGAGCCGCTCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGFTVTA*RSRSRL
Trigger: GAGCCTGGAGCGGCTCCGGCAGGCTGTCACGGTGAA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGTCGCTGGAGGGGACTaGCATGTCAGACAGAGTGGC +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMVAGGD*HVRQSG
Trigger: GCCACTCTGTCTGACATGGCAGTCCCCTCCAGCGAC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCAACTTTCCTCAGGGATaGTCTGGGGTGACGGGGTCC +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGNFPQG*SGVTGS
Trigger: GGACCCCGTCACCCCAGAGCATCCCTGAGGAAAGTT...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGCTCTCTTCGGTTCATaGGCCGGACCCGGACGGCAA +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQALFGS*AGPGRQ
Trigger: TTGCCGTCCGGGTCCGGCCCATGAACCGAAGAGAGC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGGGTGCAGGACCGTCTaGTTCCCTTCCATCTCCACC +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMGCRTV*FPSIST
Trigger: GGTGGAGATGGAAGGGAACCAGACGGTCCTGCACCC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCGCAACCTCCCCCTGCTaGCTGATGATGGGTACTGCA +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGATSPC*LMMGTA
Trigger: TGCAGTACCCATCATCAGCCAGCAGGGGGAGGTTGC...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGCAGCTTGGTGGACCTaGCGGTCACGCAGCCAATGG +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQAAWWT*RSRSQW
Trigger: CCATTGGCTGCGTGACCGCCAGGTCCACCAAGCTGC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTCTCTCTGCAGCTTGGTaGACCTGGCGGTCACGCAGC +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSLSAAW*TWRSRS
Trigger: GCTGCGTGACCGCCAGGTCCACCAAGCTGCAGAGAG...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTATTCCATGCCAGGAGGTaGGACCCAGTCAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVFHARR*DPVSRC
Trigger: GCACCTGCTGACTGGGTCCCACCTCCTGGCATGGAA...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGTTCCATGCCAGGAGGTaGGACCCAGTCAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMFHARR*DPVSRC
Trigger: GCACCTGCTGACTGGGTCCCACCTCCTGGCATGGAA...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGGTCTGAGCTGTCGCTaGAGGGGACTGCCATGTCAG +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMGLSCR*RGLPCQ
Trigger: CTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCAAACCAGAAGCTCGTTaGGGGCAGGGTCTGCGTTCA +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGKPEAR*GQGLRS
Trigger: TGAACGCAGACCCTGCCCTCAACGAGCTTCTGGTTT...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCGAACGTTCGGTGTACTaGGGCTTCTCCGAATGTGCC +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGERSVY*GFSECA
Trigger: GGCACATTCGGAGAAGCCTCAGTACACCGAACGTTC...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAAACTTTCCTCAGGGATaGTCTGGGGTGACGGGGTCC +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVNFPQG*SGVTGS
Trigger: GGACCCCGTCACCCCAGAGCATCCCTGAGGAAAGTT...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGCAGCCAGGGTTATGTaGCTGGGATGGAGGCATGCT +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMAARVM*LGWRHA
Trigger: AGCATGCCTCCATCCCAGGCACATAACCCTGGCTGC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCCTCGTAGTTGTAGTCTaGCTCCGAGGAAGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGLVVVV*LRGSLA
Trigger: AGCGAGGCTTCCTCGGAGCCAGACTACAACTACGAG...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGAGTCCACCTCCCAGATaGGGCTTCCGTTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLSPPPR*GFRSQH
Trigger: GTGCTGGGAACGGAAGCCCCATCTGGGAGGTGGACT...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCGTTCCTTGGGCAGGATaGAGTTCACACCGGACGCAT +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGVPWAG*SSHRTH
Trigger: ATGCGTCCGGTGTGAACTCCATCCTGCCCAAGGAAC...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTTCCTCAGGGATGCTCTaGGGTGACGGGGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQASSGML*GDGVPL
Trigger: CAAGGGGACCCCGTCACCCCAGAGCATCCCTGAGGA...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR TCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTATCCAGGGCGATCCTTTaGAACAGAGCACAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVSRAIL*NRAQQS
Trigger: GCTCTGCTGTGCTCTGTTTCAAAGGATCGCCCTGGA...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAGGATGGCTTCAACCATaGGTGGCAGTGTCCCTGAGT +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVGWLQP*VAVSLS
Trigger: ACTCAGGGACACTGCCACTCATGGTTGAAGCCATCC...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCTGGCGGCCGGGTGGCTaGGCTGCACGGTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLWRPGG*AARWSS
Trigger: TGAAGACCACCGTGCAGCTCAGCCACCCGGCCGCCA...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGGGATAAGGCCCAGCTaGTCTGCGTGGCCCATCATG +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQAGIRPS*SAWPIM
Trigger: CATGATGGGCCACGCAGAGCAGCTGGGCCTTATCCC...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGGATGTGTGTTTCCATaGCAGGAGGTGGGACCCAGT +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMGCVFP*QEVGPS
Trigger: ACTGGGTCCCACCTCCTGGCATGGAAACACACATCC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAGGATGTGTGTTTCCATaGCAGGAGGTGGGACCCAGT +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVGCVFP*QEVGPS
Trigger: ACTGGGTCCCACCTCCTGGCATGGAAACACACATCC...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGAGGATATTCTCCACCTaGAGCACGCCCCGCGTGTAC +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQRIFST*STPRVY
Trigger: GTACACGCGGGGCGTGCTGCAGGTGGAGAATATCCT...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACCTGGGATGGAGGCATaGTCTCTTGGCTTAGGAGAG +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVPGMEA*SLGLGE
Trigger: CTCTCCTAAGCCAAGAGAGCATGCCTCCATCCCAGG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGTCGCCGTGCCACAGCTaGGTAGTACTGCAGACAAGG +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQSPCHS*VVLQTR
Trigger: CCTTGTCTGCAGTACTACCCAGCTGTGGCACGGCGA...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCGGTCTGAGGCGCTGCTaGGCGGCTGCCTCTCGGGAG +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSGLRRC*AAASRE
Trigger: CTCCCGAGAGGCAGCCGCCCAGCAGCGCCTCAGACC...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAATCTGGGTCCACCACTaGAGCAGCCACTGTAGACTC +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVIWVHH*SSHCRL
Trigger: GAGTCTACAGTGGCTGCTCCAGTGGTGGACCCAGAT...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGTTCCTTGGGCAGGATaGAGTTCACACCGGACGCAT +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMVPWAG*SSHRTH
Trigger: ATGCGTCCGGTGTGAACTCCATCCTGCCCAAGGAAC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGTCCTCAAAGCTGGTaGCAGCCAGCTGAGACAGAC +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLCPQSW*QPAETD
Trigger: GTCTGTCTCAGCTGGCTGTCACCAGCTTTGAGGACA...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGAGCTTTTTGACCCGGTaGATGACTTCGCCGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQSFLTR*MTSPLL
Trigger: CAGCAGCGGCGAAGTCATTCACCGGGTCAAAAAGCT...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGAGTGGCAGTGTCCCTaGGTGCTGTACAGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQEWQCP*VLYRFH
Trigger: GTGAAACCTGTACAGCACTCAGGGACACTGCCACTC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGCTGCTCATTGGCACTaGGGTCATCCGCGTTCAGAT +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQAAHWH*GHPRSD
Trigger: ATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCGGCATGAGGATTCTCTaGTGGACAACCTTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGGMRIL*WTTFLA
Trigger: AGCAAGGAAGGTTGTCCATCAGAGAATCCTCATGCC...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATTCATGGCCTCAGCCTaGGAGAGCTGCTCCCTCAGT +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQFMASA*ESCSLS
Trigger: ACTGAGGGAGCAGCTCTCGCAGGCTGAGGCCATGAA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCGTCAGCCCCACCCACTaGTCCACCAGCCTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLVSPTH*STSLAS
Trigger: GGAAGCCAGGCTGGTGGAGCAGTGGGTGGGGCTGAC...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGAACCTTCCTTGCTCCTaGGAGGTGAGTCCCTGGGTA +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLNLPCS*EVSPWV
Trigger: TACCCAGGGACTCACCTCGCAGGAGCAAGGAAGGTT...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGAACTTTCCTCAGGGATaGTCTGGGGTGACGGGGTCC +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGNFPQG*SGVTGS
Trigger: GGACCCCGTCACCCCAGAGCATCCCTGAGGAAAGTT...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACCCAGCTGCTCTGCGTaGCCCATCATGGAAAAGGAC +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQPSCSA*PIMEKD
Trigger: GTCCTTTTCCATGATGGGCCACGCAGAGCAGCTGGG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGTCAATGGTCCAGACCTaGGTGCCCTTCCCTTTCCTC +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQSMVQT*VPFPFL
Trigger: GAGGAAAGGGAAGGGCACCCAGGTCTGGACCATTGA...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTTGTACTGTGCGTCCTTaGACTGCGGGGAGGGCACAT +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQACTVRP*TAGRAH
Trigger: ATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTACA...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGAGTCCCAGGAGGCTGTaGCTGAAACCTCGTCATCAC +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQSPRRL*LKPRHH
Trigger: GTGATGACGAGGTTTCAGCCACAGCCTCCTGGGACT...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTTCCATGGCGGCCGGGTaGCTGAGCTGCACGGTGGTC +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISSMAAG*LSCTVV
Trigger: GACCACCGTGCAGCTCAGCCACCCGGCCGCCATGGA...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTTGCGAGGTGAGTCCCTaGGTAAAGTCCCATAGCACG +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSCEVSP*VKSHST
Trigger: CGTGCTATGGGACTTTACCCAGGGACTCACCTCGCA...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTGGCTTAGGAGAGGTCTaGCTTCCAGGGCCAACCTTT +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSGLGEV*LPGPTF
Trigger: AAAGGTTGGCCCTGGAAGCCAGACCTCTCCTAAGCC...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGAATTCTCTGGCTTGGTaGCCATCTTTGCTGGGGCCG +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLNSLAW*PSLLGP
Trigger: CGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATT...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGCAGAATTCTCTGGCTTaGTGGCCATCTTTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMQNSLA*WPSLLG
Trigger: CCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTG...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCTATCGTCACCTCTCCTaGGCAGAATTCTCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGYRHLS*AEFSGL
Trigger: CAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGATA...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTTAGAGCCCTCCTCCTaGAGGGCTCCCCTACAGAAC +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGLEPSS*RAPLQN
Trigger: GTTCTGTAGGGGAGCCCTCCAGGAGGAGGGCTCTAA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATTAGAGCCCTCCTCCTaGAGGGCTCCCCTACAGAAC +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQLEPSS*RAPLQN
Trigger: GTTCTGTAGGGGAGCCCTCCAGGAGGAGGGCTCTAA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR TCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGAAGAGCTGGATGTCCTaGGAGGTATCTGCACCCACC +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGKSWMS*EVSAPT
Trigger: GGTGGGTGCAGATACCTCTCAGGACATCCAGCTCTT...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGGCATCAGCTTCCTGCTaGGAGCTTCCAGCTCGTTTT +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLASASC*ELPARF
Trigger: AAAACGAGCTGGAAGCTCTCAGCAGGAAGCTGATGC...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATCAGCCTGCGAGAGCTaGTCCCTCAGTTTCTCCACT +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQSACES*SLSFST
Trigger: AGTGGAGAAACTGAGGGAGCAGCTCTCGCAGGCTGA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCCCGTCGTTTAATGAGTaGATCGGACCATCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGPSFNE*IGPSLS
Trigger: AGAGAGAGATGGTCCGATGCACTCATTAAACGACGG...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTGTCAGCCCCACCCACTaGTCCACCAGCCTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISVSPTH*STSLAS
Trigger: GGAAGCCAGGCTGGTGGAGCAGTGGGTGGGGCTGAC...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGACCCAGTCAGCAGGTaGCCCGGGGATTCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTDPVSR*PGDSAA
Trigger: GGCAGCGGAATCCCCGGGGCACCTGCTGACTGGGTC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTGACCCAGTCAGCAGGTaGCCCGGGGATTCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRDPVSR*PGDSAA
Trigger: GGCAGCGGAATCCCCGGGGCACCTGCTGACTGGGTC...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTTCACCGTGACAGCCTaGCGGAGCCGCTCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSFTVTA*RSRSRL
Trigger: GAGCCTGGAGCGGCTCCGGCAGGCTGTCACGGTGAA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGAGGGCTACGGGACACTaGTTTCTCCAAGGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGRATGH*FLQGSR
Trigger: TCGAGAGCCTTGGAGAAAGCAGTGTCCCGTAGCCCT...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGCTACTGGCATGCTGCTaGCATTGCTTCCTGGGGTTA +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLLLACC*HCFLGL
Trigger: TAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAG...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTAGTCCCAGGAGGCTGTaGCTGAAACCTCGTCATCAC +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQASPRRL*LKPRHH
Trigger: GTGATGACGAGGTTTCAGCCACAGCCTCCTGGGACT...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCTCCATGGCGGCCGGGTaGCTGAGCTGCACGGTGGTC +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTSMAAG*LSCTVV
Trigger: GACCACCGTGCAGCTCAGCCACCCGGCCGCCATGGA...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGAATGTGCCTCGCTTTaGTGGAAAGCGCTTCCTTCA +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMECASL*WKALPS
Trigger: TGAAGGAAGCGCTTTCCACCAAAGCGAGGCACATTC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTGCGAGGTGAGTCCCTaGGTAAAGTCCCATAGCACG +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGCEVSP*VKSHST
Trigger: CGTGCTATGGGACTTTACCCAGGGACTCACCTCGCA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTATCCTGCATGGCATTCTaGAACTTTCCTCAGGGATGC +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVSCMAF*NFPQGC
Trigger: GCATCCCTGAGGAAAGTTCCAGAATGCCATGCAGGA...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTAATTCTCTGGCTTGGTaGCCATCTTTGCTGGGGCCG +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQANSLAW*PSLLGP
Trigger: CGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATT...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR TCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAAGACAAGGGTGCCATTaGCACAGGACCTTGCATTTT +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVRQGCH*HRTLHF
Trigger: AAAATGCAAGGTCCTGTGTCAATGGCACCCTTGTCT...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTCACTTGGTAGTCAGTaGGCTTGCTCATCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGSLGSQ*ACSSPR
Trigger: CCGAGGAGATGAGCAAGCTCACTGACTACCAAGTGA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGCTCATAGTTGTCTGCTaGTGGGCTGATGGTCGCTAT +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLLIVVC*WADGRY
Trigger: ATAGCGACCATCAGCCCAGCAGCAGACAACTATGAG...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGGCAGTGTCCCTGAGTaGTGTACAGGTTTCACTGTG +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQAGSVPE*CTGFTV
Trigger: CACAGTGAAACCTGTACAGCACTCAGGGACACTGCC...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGGGCAGTGTCCCTGAGTaGTGTACAGGTTTCACTGTG +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGGSVPE*CTGFTV
Trigger: CACAGTGAAACCTGTACAGCACTCAGGGACACTGCC...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCTGGGGGCCCACCAGCTaGTCATTGGCACTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLWGPTS*SLALRS
Trigger: TGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCA...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTGGTAGAAAAACTGACTaGCGTGTTCCTTGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSGRKTD*RVPWAG
Trigger: TCCTGCCCAAGGAACACGGCAGTCAGTTTTTCTACC...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTCTCCTCATTCATGTTaGTCGCTGCTACCGTTCGAG +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLSPHSC*SLLPFE
Trigger: CTCGAACGGTAGCAGCGACCAACATGAATGAGGAGA...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTATGTTGAAGACCGCATaGGAACGGCTGCTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQAMLKTA*ERLLSS
Trigger: TGAGGAGAGCAGCCGTTCCCATGCGGTCTTCAACAT...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACCTCGGCTAGGAAGTTaGCTTCCCTCACCAAAGTGT +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQPRLGS*LPSPKC
Trigger: ACACTTTGGTGAGGGAAGCCAACTTCCTAGCCGAGG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCCCTTCCCTTTCCTCCTaGCTTGGATGGCGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSPSLSS*LGWRAR
Trigger: GCGAGCCCGCCATCCAAGCCAGGAGGAAAGGGAAGG...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCCATTCAGCTCCAGAATaGAGATCCACACCTCTATTC +
Preference number: 4 (lower is better)
Translates to: LSQGGIDERSCQAVTWRGHSAPE*RSTPLF
Trigger: GAATAGAGGTGTGGATCTCCATTCTGGAGCTGAATG...GCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTGAATGTGCCTCGCTTTaGTGGAAAGCGCTTCCTTCA +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSECASL*WKALPS
Trigger: TGAAGGAAGCGCTTTCCACCAAAGCGAGGCACATTC...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTCTTCCGAGTCCTCTTaGCTTAGGAGAGGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGSSESS*LRRGLA
Trigger: AGCCAGACCTCTCCTAAGCCAAGAGGACTCGGAAGA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTCCTCAGGGATGCTCTaGGGTGACGGGGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSSSGML*GDGVPL
Trigger: CAAGGGGACCCCGTCACCCCAGAGCATCCCTGAGGA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGTCCTGCATGGCATTCTaGAACTTTCCTCAGGGATGC +
Preference number: 4 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQSCMAF*NFPQGC
Trigger: GCATCCCTGAGGAAAGTTCCAGAATGCCATGCAGGA...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGTGGAATCTCAGAGAGTaGGTGGAAGTTCTGGTCGTT +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMWNLRE*VEVLVV
Trigger: AACGACCAGAACTTCCACCCACTCTCTGAGATTCCA...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225836.2
3UTR CAA 72 bp GATAAAGAAGCCGCCAGCAAGGCTGTACCCCAACTCTaGGTACATCGCTGCGTTGTGTGCAGTAACACTTCC +
Preference number: 4 (lower is better)
Translates to: DKEAASKAVPQL*VHRCVVCSNTS
Trigger: GGAAGTGTTACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGGCTTCTTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGGACTTTGAAGGTCTGTaGCTCATTTTGCTCCAGGGC +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGDFEGL*LILLQG
Trigger: GCCCTGGAGCAAAATGAGTCACAGACCTTCAAAGTC...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTAGCCTGGTCAGCCAGTaGCGATATAACCAATCCCAA +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQASLVSQ*RYNQSQ
Trigger: TTGGGATTGGTTATATCGTCACTGGCTGACCAGGCT...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATGTCTCATCCTTCCCTaGGCCTCTTCCTACTTCTGT +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQCLILP*ASSYFC
Trigger: ACAGAAGTAGGAAGAGGCTCAGGGAAGGATGAGACA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR GCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTATTTGTTTTTGCCTTTaGCAGCAGCCTGGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSICFCL*QQPGQP
Trigger: TGGCTGACCAGGCTGCTGGCAAAGGCAAAAACAAAT...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTGCACGAATTTGTTTTTaGCTTTGCCAGCAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSARICF*LCQQPG
Trigger: ACCAGGCTGCTGGCAAAGGCAAAAACAAATTCGTGC...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGTCATTCCACCTGTCATaGAATGTCCTTGTCTTCGCA +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMSFHLS*NVLVFA
Trigger: TGCGAAGACAAGGACATTGCATGACAGGTGGAATGA...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGGTAGAAAAACTGACTaGCGTGTTCCTTGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQGRKTD*RVPWAG
Trigger: TCCTGCCCAAGGAACACGGCAGTCAGTTTTTCTACC...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTGTCGCTGGAGGGGACTaGCATGTCAGACAGAGTGGC +
Preference number: 4 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAVAGGD*HVRQSG
Trigger: GCCACTCTGTCTGACATGGCAGTCCCCTCCAGCGAC...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTATCTTCTTCTCGGGTTTaGTACTGTGTTCTACTGGCA +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVSSSRV*YCVLLA
Trigger: TGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGA...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCTGCGTGGCCCATCATaGAAAAGGACTTTCCAGAAC +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGLRGPS*KRTFQN
Trigger: GTTCTGGAAAGTCCTTTTCCATGATGGGCCACGCAG...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACTGCATATCTTAGCGTaGACAGTGTCTCCTCATAGT +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVLHILA*TVSPHS
Trigger: ACTATGAGGAGACACTGTCCACGCTAAGATATGCAG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACCTCTCTGCAGCTTGGTaGACCTGGCGGTCACGCAGC +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNLSAAW*TWRSRS
Trigger: GCTGCGTGACCGCCAGGTCCACCAAGCTGCAGAGAG...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTACTGCTCCACCAGCCTaGCTTCCCGCTCCATGTCGT +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISTAPPA*LPAPCR
Trigger: ACGACATGGAGCGGGAAGCCAGGCTGGTGGAGCAGT...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATCCTGCATGGCATTCTaGAACTTTCCTCAGGGATGC +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQSCMAF*NFPQGC
Trigger: GCATCCCTGAGGAAAGTTCCAGAATGCCATGCAGGA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATATCGTCACCTCTCCTaGGCAGAATTCTCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQYRHLS*AEFSGL
Trigger: CAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGATA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGGCTACTGTGTTCTACTaGCATGCTGCTGCCATTGCT +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGATVFY*HAAAIA
Trigger: AGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGC...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTTGTCGTCCCCCACCTTaGTGCCAGAGGTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPCRPPP*CQRSPG
Trigger: CCCTGGAGACCTCTGGCATCAAGGTGGGGGACGACA...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACATCACTGTGCTTTATaGTGGGCAGGTAGAAAAACT +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVHHCAL*WAGRKT
Trigger: AGTTTTTCTACCTGCCCATCATAAAGCACAGTGATG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTTGGCGGCCGGGTGGCTaGGCTGCACGGTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSWRPGG*AARWSS
Trigger: TGAAGACCACCGTGCAGCTCAGCCACCCGGCCGCCA...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGAAGAACTTTGGTGGCTaGGGAGAGAACGCTTTAAAA +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMKNFGG*GENALK
Trigger: TTTTAAAGCGTTCTCTCCTCAGCCACCAAAGTTCTT...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCCGGACTTTCAGAGACTaGCTGCTCCCTTTGGGGTCC +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSRTFRD*LLPLGS
Trigger: GGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCG...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGGGCTCGCTGACGATTaGGCCTCTCTTCCTGTTGGC +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTGLADD*ASLPVG
Trigger: GCCAACAGGAAGAGAGGCGCAATCGTCAGCGAGCCC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACTGGTCCAGACCTGGGTaGCCTTCCCTTTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNWSRPG*PSLSSW
Trigger: CCAGGAGGAAAGGGAAGGGCACCCAGGTCTGGACCA...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGGCCAACCTTTTCTTATaGTCCTCTTTTACAGGCATG +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMANLFL*SSFTGM
Trigger: CATGCCTGTAAAAGAGGAGCATAAGAAAAGGTTGGC...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTAGCACAGCAGAGCCTTaGGATAAGGCCCAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: VNIESVGTRLCGRLKVTASTAEP*DKAQLL
Trigger: GAGCAGCTGGGCCTTATCCCAAGGCTCTGCTGTGCT...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACACTGCCTGCTCCCTTTaGGGTCCAAGAGGTCCCGGA +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNTACSL*GPRGPG
Trigger: TCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTTCCCAGCACACCTGTaGCCCCACACTTCAATCGCC +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSFPAHL*PHTSIA
Trigger: GGCGATTGAAGTGTGGGGCCACAGGTGTGCTGGGAA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTGCAGCTTGGTGGACCTaGCGGTCACGCAGCCAATGG +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPAAWWT*RSRSQW
Trigger: CCATTGGCTGCGTGACCGCCAGGTCCACCAAGCTGC...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGGTCTGAGCTGTCGCTaGAGGGGACTGCCATGTCAG +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTGLSCR*RGLPCQ
Trigger: CTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTTAGAGCCCTCCTCCTaGAGGGCTCCCCTACAGAAC +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSLEPSS*RAPLQN
Trigger: GTTCTGTAGGGGAGCCCTCCAGGAGGAGGGCTCTAA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCGGATGGCTTCAACCATaGGTGGCAGTGTCCCTGAGT +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSGWLQP*VAVSLS
Trigger: ACTCAGGGACACTGCCACTCATGGTTGAAGCCATCC...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCGCTGCTCATTGGCACTaGGGTCATCCGCGTTCAGAT +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSAAHWH*GHPRSD
Trigger: ATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGC...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTCATCACTGTGCTTTATaGTGGGCAGGTAGAAAAACT +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSHHCAL*WAGRKT
Trigger: AGTTTTTCTACCTGCCCATCATAAAGCACAGTGATG...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTGAACGTTCGGTGTACTaGGGCTTCTCCGAATGTGCC +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISERSVY*GFSECA
Trigger: GGCACATTCGGAGAAGCCTCAGTACACCGAACGTTC...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTAAGGCCCAGCTGCTCTaGGTGGCCCATCATGGAAAA +
Preference number: 4 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAKAQLL*VAHHGK
Trigger: TTTTCCATGATGGGCCACGCAGAGCAGCTGGGCCTT...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTGCTGATGATGGGTACTaGATATTGAAGCTTCACATC +
Preference number: 4 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSADDGY*ILKLHI
Trigger: GATGTGAAGCTTCAATATGCAGTACCCATCATCAGC...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTCCGGCAACCTCCCCCTaGTGGCTGATGATGGGTACT +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPPATSP*WLMMGT
Trigger: AGTACCCATCATCAGCCAGCAGGGGGAGGTTGCCGG...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTAGGATATTCTCCACCTaGAGCACGCCCCGCGTGTAC +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRRIFST*STPRVY
Trigger: GTACACGCGGGGCGTGCTGCAGGTGGAGAATATCCT...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTAACCTTCCTTGCTCCTaGGAGGTGAGTCCCTGGGTA +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISNLPCS*EVSPWV
Trigger: TACCCAGGGACTCACCTCGCAGGAGCAAGGAAGGTT...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACCCTACAGAACAATCTaGCAAACCATCAAAGTCTTT +
Preference number: 4 (lower is better)
Translates to: PPARLYPNSWYIAALCAVPYRTI*QTIKVF
Trigger: AAAGACTTTGATGGTTTGGCAGATTGTTCTGTAGGG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTGCTCGGGGGCCTTCATaGCCTCAGCCTGCGAGAGCT +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSARGPS*PQPARA
Trigger: AGCTCTCGCAGGCTGAGGCCATGAAGGCCCCCGAGC...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACATTCAGCTCCAGAATaGAGATCCACACCTCTATTC +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQHSAPE*RSTPLF
Trigger: GAATAGAGGTGTGGATCTCCATTCTGGAGCTGAATG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGTCGCCTTTGGGATATTaGATACTATCTCATAGGTCA +
Preference number: 4 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMSPLGY*ILSHRS
Trigger: TGACCTATGAGATAGTATCCAATATCCCAAAGGCGA...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCCAGAATTCTCTGGCTTaGTGGCCATCTTTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLQNSLA*WPSLLG
Trigger: CCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTG...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCAGGGTTATGTGCCTaGGATGGAGGCATGCTCTCT +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISPGLCA*DGGMLS
Trigger: AGAGAGCATGCCTCCATCCCAGGCACATAACCCTGG...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGAGTGGCAGTGTCCCTaGGTGCTGTACAGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTEWQCP*VLYRFH
Trigger: GTGAAACCTGTACAGCACTCAGGGACACTGCCACTC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTGCATCAGCTTCCTGCTaGGAGCTTCCAGCTCGTTTT +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISASASC*ELPARF
Trigger: AAAACGAGCTGGAAGCTCTCAGCAGGAAGCTGATGC...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAATTCATGTTGGTCGCTaGTACCGTTCGAGACTTATT +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQIHVGR*YRSRLI
Trigger: AATAAGTCTCGAACGGTAGCAGCGACCAACATGAAT...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCCCGCATGGGAACGGCTaGTCTCCTCATTCATGTTGG +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTPHGNG*SPHSCW
Trigger: CCAACATGAATGAGGAGAGCAGCCGTTCCCATGCGG...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCGCTGTCTCTCCTGTaGGATCGCTTCTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISPLSLL*DRFCFP
Trigger: AGGAAAACAGAAGCGATCGCACAGGAGAGACAGCGG...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTTGAGGGCAGGGTCTaGGTTCAGGTTGACGAGGTA +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTVEGRV*VQVDEV
Trigger: TACCTCGTCAACCTGAACGCAGACCCTGCCCTCAAC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTCCTGAGAGGTATCTaGACCCACCCGGGTATGATC +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTVLRGI*THPGMI
Trigger: GATCATACCCGGGTGGGTGCAGATACCTCTCAGGAC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTGCTGGGCTGTCTGGCTaGTGTAGGCCAGACGGTCTG +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSAGLSG*CRPDGL
Trigger: CAGACCGTCTGGCCTACAGCAGCCAGACAGCCCAGC...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTTGGCTTTCACCAGCTaGTCTCGAAGCTTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSLAFTS*SRSLAK
Trigger: CTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCCAACCTTTTCTTATaGTCCTCTTTTACAGGCATG +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQANLFL*SSFTGM
Trigger: CATGCCTGTAAAAGAGGAGCATAAGAAAAGGTTGGC...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCAGGGCTACGGGACACTaGTTTCTCCAAGGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTRATGH*FLQGSR
Trigger: TCGAGAGCCTTGGAGAAAGCAGTGTCCCGTAGCCCT...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTAACATGAAGCAGTCCTaGATGGCATTCTGGAACTTT +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQANMKQS*MAFWNF
Trigger: AAAGTTCCAGAATGCCATGCAGGACTGCTTCATGTT...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR GCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGCCCTACAGAACAATCTaGCAAACCATCAAAGTCTTT +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLPYRTI*QTIKVF
Trigger: AAAGACTTTGATGGTTTGGCAGATTGTTCTGTAGGG...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGGTTCACAATCCTCTTaGCTCGATCTGCATATCTTA +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQAGSQSS*LDLHIL
Trigger: TAAGATATGCAGATCGAGCCAAGAGGATTGTGAACC...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACGTCTCTTCAAACTCTaGGTGAAACTCTGCTTGTTA +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQRLFKL*VKLCLL
Trigger: TAACAAGCAGAGTTTCACCCAGAGTTTGAAGAGACG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACGGCTTAGGAGAGGTCTaGCTTCCAGGGCCAACCTTT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNGLGEV*LPGPTF
Trigger: AAAGGTTGGCCCTGGAAGCCAGACCTCTCCTAAGCC...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTCAGACAGAGTGGCATTaGAGGCACTGTGGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAQTEWH*RHCGRS
Trigger: ACTTCTCCCACAGTGCCTCCAATGCCACTCTGTCTG...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTCCATGTCAGACAGAGTaGCATTGGAGGCACTGTGGG +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRPCQTE*HWRHCG
Trigger: CCCACAGTGCCTCCAATGCCACTCTGTCTGACATGG...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCAATTCTCTGGCTTGGTaGCCATCTTTGCTGGGGCCG +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTNSLAW*PSLLGP
Trigger: CGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATT...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACGCTGCCATTGCTTCCTaGGGTTACAATGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNAAIAS*GYNAAR
Trigger: CCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGC...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCAGGAACTCTTCTGTaGCAGTCACCACATAGTCCT +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISPGTLL*QSPHSP
Trigger: AGGACTATGTGGTGACTGTCACAGAAGAGTTCCTGG...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACGTACAGGTTTCACTGTaGCCTGCACTCTACGGGAGT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNVQVSL*PALYGS
Trigger: ACTCCCGTAGAGTGCAGGTCACAGTGAAACCTGTAC...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTACAGGTTTCACTGTaGCCTGCACTCTACGGGAGT +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTVQVSL*PALYGS
Trigger: ACTCCCGTAGAGTGCAGGTCACAGTGAAACCTGTAC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCGGCATGAGGATTCTCTaGTGGACAACCTTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSGMRIL*WTTFLA
Trigger: AGCAAGGAAGGTTGTCCATCAGAGAATCCTCATGCC...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTGGCATTGTAAACACTaGAGTCAGCGAACTCCACGG +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSWHCKH*SQRTPR
Trigger: CCGTGGAGTTCGCTGACTTCAGTGTTTACAATGCCA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACCTTTCAGAGACTGCCTaGTCCCTTTGGGGTCCAAGA +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNLSETA*SLWGPR
Trigger: TCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAG...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTCTCCTCATAGTTGTCTaGTGCTGGGCTGATGGTCGC +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPLLIVV*CWADGR
Trigger: GCGACCATCAGCCCAGCAGCAGACAACTATGAGGAG...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTTGGGGGCCCACCAGCTaGTCATTGGCACTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSWGPTS*SLALRS
Trigger: TGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCA...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAGGCTTCTCCGAATGTaGCTCGCTTTGGTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNRLLRM*LALVES
Trigger: GCTTTCCACCAAAGCGAGGCACATTCGGAGAAGCCT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACGCATGCTGCTGCCATTaGTTCCTGGGGTTACAATGC +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNACCCH*FLGLQC
Trigger: GCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGC...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTGTGTTCTACTGGCATaGTGCTGCCATTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSCVLLA*CCHCFL
Trigger: CAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTTCGCCTTTGGGATATTaGATACTATCTCATAGGTCA +
Preference number: 4 (lower is better)
Translates to: KMEHGLSQGGIDERSCQASPLGY*ILSHRS
Trigger: TGACCTATGAGATAGTATCCAATATCCCAAAGGCGA...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCCAGAATTCTCTGGCTTaGTGGCCATCTTTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTQNSLA*WPSLLG
Trigger: CCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTG...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGAACTCTGTGAAGGAATaGTCCTCCAAAATGTTTGTA +
Preference number: 4 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLNSVKE*SSKMFV
Trigger: TACAAACATTTTGGAGGACCATTCCTTCACAGAGTT...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR TCA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATTGAAAACGACTTCTTaGCCAGCATATTTTGTTGTG +
Preference number: 4 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQLKTTS*PAYFVV
Trigger: CACAACAAAATATGCTGGTCAAGAAGTCGTTTTCAA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTCTCACTAGAGTTCTCTaGAGAGTCATCCTCCGCCAT +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRLTRVL*RVILRH
Trigger: ATGGCGGAGGATGACTCTTCAGAGAACTCTAGTGAG...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGTCTTCAAACTCTGGGTaGAACTCTGCTTGTTATAAA +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGSSNSG*NSACYK
Trigger: TTTATAACAAGCAGAGTTTCACCCAGAGTTTGAAGA...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACTGGCATTGTAAACACTaGAGTCAGCGAACTCCACGG +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNWHCKH*SQRTPR
Trigger: CCGTGGAGTTCGCTGACTTCAGTGTTTACAATGCCA...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAGCTTGGCCAAGCTCTaGCTAAAGAGTTCATCCCTC +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNSLAKL*LKSSSL
Trigger: GAGGGATGAACTCTTTAGGCAGAGCTTGGCCAAGCT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTAGGCTTCTCCGAATGTaGCTCGCTTTGGTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPRLLRM*LALVES
Trigger: GCTTTCCACCAAAGCGAGGCACATTCGGAGAAGCCT...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACTTCCTGGGGTTACAATaGAGCCAGGGTTATGTGCCT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNFLGLQ*SQGYVP
Trigger: AGGCACATAACCCTGGCTGCATTGTAACCCCAGGAA...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCCAAAGGCAAACACCTTaGGAGGTTTTCTTTCTCCCT +
Preference number: 4 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLQRQTP*EVFFLP
Trigger: AGGGAGAAAGAAAACCTCCCAAGGTGTTTGCCTTTG...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTTATCGTCACCTCTCCTaGGCAGAATTCTCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRYRHLS*AEFSGL
Trigger: CAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGATA...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGAACTCTGTGAAGGAATaGTCCTCCAAAATGTTTGTA +
Preference number: 4 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGNSVKE*SSKMFV
Trigger: TACAAACATTTTGGAGGACCATTCCTTCACAGAGTT...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTTGTCTCATCCTTCCCTaGGCCTCTTCCTACTTCTGT +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPCLILP*ASSYFC
Trigger: ACAGAAGTAGGAAGAGGCTCAGGGAAGGATGAGACA...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTCCGTCGTTTAATGAGTaGATCGGACCATCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRPSFNE*IGPSLS
Trigger: AGAGAGAGATGGTCCGATGCACTCATTAAACGACGG...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTGCTATCATAGAGGTCTaGCTGTTCCCTCCTAAATTG +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISAIIEV*LFPPKL
Trigger: CAATTTAGGAGGGAACAGCCAGACCTCTATGATAGC...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCATAGTTGTCTGCTGCTaGGCTGATGGTCGCTATCAT +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTIVVCC*ADGRYH
Trigger: ATGATAGCGACCATCAGCCCAGCAGCAGACAACTAT...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAATTTGAGAGGCTTATaGGTAGCCCGGTTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNNLRGL*VARLPL
Trigger: AAGAGGCAACCGGGCTACCCATAAGCCTCTCAAATT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCCATGTCAGACAGAGTaGCATTGGAGGCACTGTGGG +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSPCQTE*HWRHCG
Trigger: CCCACAGTGCCTCCAATGCCACTCTGTCTGACATGG...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTAAGAACTTTGGTGGCTaGGGAGAGAACGCTTTAAAA +
Preference number: 4 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAKNFGG*GENALK
Trigger: TTTTAAAGCGTTCTCTCCTCAGCCACCAAAGTTCTT...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACATTGACACAGGACCTTaGATTTTCTTTGGGCGTGAG +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNIDTGP*IFFGRE
Trigger: CTCACGCCCAAAGAAAATGCAAGGTCCTGTGTCAAT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCAGACAGAGTGGCATTaGAGGCACTGTGGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSQTEWH*RHCGRS
Trigger: ACTTCTCCCACAGTGCCTCCAATGCCACTCTGTCTG...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTGTTATGTGCCTGGGATaGAGGCATGCTCTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSVMCLG*RHALLA
Trigger: AGCCAAGAGAGCATGCCTCCATCCCAGGCACATAAC...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCACGATACCTCGACTTTaGAGGTCTGTGACTCATTTT +
Preference number: 4 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTTIPRL*RSVTHF
Trigger: AAAATGAGTCACAGACCTTCAAAGTCGAGGTATCGT...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTGCGCACCATCAGAAATaGACTCCAGGAACTCTTCTG +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSAHHQK*TPGTLL
Trigger: CAGAAGAGTTCCTGGAGTTCATTTCTGATGGTGCGC...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR TCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTTGTCTCATCCTTCCCTaGGCCTCTTCCTACTTCTGT +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSCLILP*ASSYFC
Trigger: ACAGAAGTAGGAAGAGGCTCAGGGAAGGATGAGACA...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAACATGAAGCAGTCCTaGATGGCATTCTGGAACTTT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNNMKQS*MAFWNF
Trigger: AAAGTTCCAGAATGCCATGCAGGACTGCTTCATGTT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACTTTGAAGAACTTTGGTaGCTGAGGAGAGAACGCTTT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNFEELW*LRRERF
Trigger: AAAGCGTTCTCTCCTCAGCCACCAAAGTTCTTCAAA...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTATGGGTACTGCATATTaGAGCTTCACATCACAGAAG +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPMGTAY*SFTSQK
Trigger: CTTCTGTGATGTGAAGCTTCAATATGCAGTACCCAT...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTACCTGTCTGGCCATATaGAAAAATACAAGCATTGTA +
Preference number: 4 (lower is better)
Translates to: GQLTIHTNSSLSRESPISTCLAI*KNTSIV
Trigger: TACAATGCTTGTATTTTTGCATATGGCCAGACAGGT...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTCGTCTCTTCAAACTCTaGGTGAAACTCTGCTTGTTA +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPRLFKL*VKLCLL
Trigger: TAACAAGCAGAGTTTCACCCAGAGTTTGAAGAGACG...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTTTTGAAGAACTTTGGTaGCTGAGGAGAGAACGCTTT +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPFEELW*LRRERF
Trigger: AAAGCGTTCTCTCCTCAGCCACCAAAGTTCTTCAAA...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR TCA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTTCTTCAAACTCTGGGTaGAACTCTGCTTGTTATAAA +
Preference number: 4 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRSSNSG*NSACYK
Trigger: TTTATAACAAGCAGAGTTTCACCCAGAGTTTGAAGA...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR GCA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTCCCTACAGAACAATCTaGCAAACCATCAAAGTCTTT +
Preference number: 4 (lower is better)
Translates to: ELKNQKSTADCTHALSLPPYRTI*QTIKVF
Trigger: AAAGACTTTGATGGTTTGGCAGATTGTTCTGTAGGG...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAACCACATTTTGAACTaGATCATTGCTGTTCAGTGT +
Preference number: 4 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNNHILN*IIAVQC
Trigger: ACACTGAACAGCAATGATCCAGTTCAAAATGTGGTT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTTCCCATAGAGCCTCTTaGCCTCAGGAACATTTTCTT +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSSHRAS*PQEHFL
Trigger: AAGAAAATGTTCCTGAGGCCAAGAGGCTCTATGGGA...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR GCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTAACATGAAGCAGTCCTaGATGGCATTCTGGAACTTT +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSNMKQS*MAFWNF
Trigger: AAAGTTCCAGAATGCCATGCAGGACTGCTTCATGTT...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
3UTR CAA 72 bp AGTCAACTGGGTCACTTTGTAACAAAGTCCAGTACCTaGGGATTTTTGACAAATCATCTATCTGCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: SQLGHFVTKSST*GFLTNHLSAFQ
Trigger: CTGAAAGGCAGATAGATGATTTGTCAAAAATCCCAAGGTACTGGACTTTGTTACAAAGTGACCCAGTTGACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CCA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTAACTCTGTGAAGGAATaGTCCTCCAAAATGTTTGTA +
Preference number: 4 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSNSVKE*SSKMFV
Trigger: TACAAACATTTTGGAGGACCATTCCTTCACAGAGTT...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp GCGCTGCTGGGCGGCTGCCTCTCGGGAGAGAGCTGCTGGCGAAGCTaGTCCAGCTCGCGTTCGTACATGAGCCGCTGTTCCTCCAGGGCG +
Preference number: 5 (lower is better)
Translates to: ALLGGCLSGESCWRS*SSSRSYMSRCSSRA
Trigger: CGCCCTGGAGGAACAGCGGCTCATGTACGAACGCGAGCTGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CCA 90 bp GCTGGGCTGTCTGGCTGCTGTAGGCCAGACGGTCTGAGGCGCTGCTaGGCGGCTGCCTCTCGGGAGAGAGCTGCTGGCGAAGCTGCTCCA +
Preference number: 5 (lower is better)
Translates to: AGLSGCCRPDGLRRC*AAASRERAAGEAAP
Trigger: TGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGCCTCAGACCGTCTGGCCTACAGCAGCCAGACAGCCCAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CCA 90 bp CGGTCTGAGGCGCTGCTGGGCGGCTGCCTCTCGGGAGAGAGCTGCTaGCGAAGCTGCTCCAGCTCGCGTTCGTACATGAGCCGCTGTTCC +
Preference number: 5 (lower is better)
Translates to: RSEALLGGCLSGESC*RSCSSSRSYMSRCS
Trigger: GGAACAGCGGCTCATGTACGAACGCGAGCTGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGCCTCAGACCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS GCA 90 bp AGACGGTCTGAGGCGCTGCTGGGCGGCTGCCTCTCGGGAGAGAGCTaGTGGCGAAGCTGCTCCAGCTCGCGTTCGTACATGAGCCGCTGT +
Preference number: 5 (lower is better)
Translates to: RRSEALLGGCLSGES*WRSCSSSRSYMSRC
Trigger: ACAGCGGCTCATGTACGAACGCGAGCTGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGCCTCAGACCGTCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CCA 90 bp CCCGGGGGCTCGGCGCACTCGACCTCCTTTGTCGAGACGGCAAGCTaGTCTGAGCTGTCGCTGGAGGGGACTGCCATGTCAGACAGAGTG +
Preference number: 5 (lower is better)
Translates to: PGGSAHSTSFVETAS*SELSLEGTAMSDRV
Trigger: CACTCTGTCTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGTGCGCCGAGCCCCCGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp GCACGCCCCGCGTGTACTTCTCGATGTATGTCTCCCCATCCAAAGTaGCCTCGTTCTCACTCCGCGCTGCCAGGAGGGCCAGGGTTTCCC +
Preference number: 5 (lower is better)
Translates to: ARPACTSRCMSPHPK*PRSHSALPGGPGFP
Trigger: GGGAAACCCTGGCCCTCCTGGCAGCGCGGAGTGAGAACGAGGGCACTTTGGATGGGGAGACATACATCGAGAAGTACACGCGGGGCGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp GGGCTCGGCGCACTCGACCTCCTTTGTCGAGACGGCAAGCTGGTCTaGGCTGTCGCTGGAGGGGACTGCCATGTCAGACAGAGTGGCATT +
Preference number: 5 (lower is better)
Translates to: GLGALDLLCRDGKLV*AVAGGDCHVRQSGI
Trigger: AATGCCACTCTGTCTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGTGCGCCGAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp CATCCGCGTTCAGATCCAGGAAGAGAACCGGGATGTGTGTTTCCATaGCAGGAGGTGGGACCCAGTCAGCAGGTGCCCCGGGGATTCCGC +
Preference number: 5 (lower is better)
Translates to: HPRSDPGREPGCVFP*QEVGPSQQVPRGFR
Trigger: GCGGAATCCCCGGGGCACCTGCTGACTGGGTCCCACCTCCTGGCATGGAAACACACATCCCGGTTCTCTTCCTGGATCTGAACGCGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp GTGACAGCCTGCCGGAGCCGCTCCAGGCTCAGGATATTCTCCACCTaGAGCACGCCCCGCGTGTACTTCTCGATGTATGTCTCCCCATCC +
Preference number: 5 (lower is better)
Translates to: VTACRSRSRLRIFST*STPRVYFSMYVSPS
Trigger: GGATGGGGAGACATACATCGAGAAGTACACGCGGGGCGTGCTGCAGGTGGAGAATATCCTGAGCCTGGAGCGGCTCCGGCAGGCTGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 90 bp GGTCACCGTGTACTGTGCGTCCTTGGACTGCGGGGAGGGCACATCTaGGTCCACCACTGGAGCAGCCACTGTAGACTCACACTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: GHRVLCVLGLRGGHI*VHHWSSHCRLTLVP
Trigger: TGGGACCAGTGTGAGTCTACAGTGGCTGCTCCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTACACGGTGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 90 bp GCCATGCGTTCTGGAATGGTTCCTGTAATGCGCGTCACCTCCACATaGAGGCGCCCGGCAACCTCCCCCTGCTGGCTGATGATGGGTACT +
Preference number: 5 (lower is better)
Translates to: AMRSGMVPVMRVTST*RRPATSPCWLMMGT
Trigger: AGTACCCATCATCAGCCAGCAGGGGGAGGTTGCCGGGCGCCTCCATGTGGAGGTGACGCGCATTACAGGAACCATTCCAGAACGCATGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp CTGTGCGTCCTTGGACTGCGGGGAGGGCACATCTGGGTCCACCACTaGAGCAGCCACTGTAGACTCACACTGGTCCCAGAACGTGTACTG +
Preference number: 5 (lower is better)
Translates to: LCVLGLRGGHIWVHH*SSHCRLTLVPERVL
Trigger: CAGTACACGTTCTGGGACCAGTGTGAGTCTACAGTGGCTGCTCCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 90 bp AGTTCACACCGGACGCATGGGGGCCCACCAGCTGCTCATTGGCACTaGGGTCATCCGCGTTCAGATCCAGGAAGAGAACCGGGATGTGTG +
Preference number: 5 (lower is better)
Translates to: SSHRTHGGPPAAHWH*GHPRSDPGREPGCV
Trigger: CACACATCCCGGTTCTCTTCCTGGATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCGGTGTGAACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp CCGCGATCCGCTTCCGCAACACTAGCTCCATGGCGGCCGGGTGGCTaGGCTGCACGGTGGTCTTCACGATCAGGTAGATCCTTTCATTCT +
Preference number: 5 (lower is better)
Translates to: PRSASATLAPWRPGG*AARWSSRSGRSFHS
Trigger: AGAATGAAAGGATCTACCTGATCGTGAAGACCACCGTGCAGCTCAGCCACCCGGCCGCCATGGAGCTAGTGTTGCGGAAGCGGATCGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp TTGGGCAGGATGGAGTTCACACCGGACGCATGGGGGCCCACCAGCTaGTCATTGGCACTGAGGTCATCCGCGTTCAGATCCAGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: LGRMEFTPDAWGPTS*SLALRSSAFRSRKR
Trigger: TCTCTTCCTGGATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCGGTGTGAACTCCATCCTGCCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 90 bp TTCTCAATGGTCCAGACCTGGGTGCCCTTCCCTTTCCTCCTGGCTTaGATGGCGGGCTCGCTGACGATTGCGCCTCTCTTCCTGTTGGCA +
Preference number: 5 (lower is better)
Translates to: FSMVQTWVPFPFLLA*MAGSLTIAPLFLLA
Trigger: TGCCAACAGGAAGAGAGGCGCAATCGTCAGCGAGCCCGCCATCCAAGCCAGGAGGAAAGGGAAGGGCACCCAGGTCTGGACCATTGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp AGCGAGTCCACCTCCCAGATGGGGCTTCCGTTCCCAGCACACCTGTaGCCCCACACTTCAATCGCCAGCGCACCATCAGAAATGAACTCC +
Preference number: 5 (lower is better)
Translates to: SESTSQMGLPFPAHL*PHTSIASAPSEMNS
Trigger: GGAGTTCATTTCTGATGGTGCGCTGGCGATTGAAGTGTGGGGCCACAGGTGTGCTGGGAACGGAAGCCCCATCTGGGAGGTGGACTCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 90 bp CTGTGCGTCCTTGGACTGCGGGGAGGGCACATCTGGGTCCACCACTaGAGCAGCCACTGTAGACTCACACTGGTCCCAGAACGTGTACNN +
Preference number: 5 (lower is better)
Translates to: LCVLGLRGGHIWVHH*SSHCRLTLVPERVX
Trigger: NNGTACACGTTCTGGGACCAGTGTGAGTCTACAGTGGCTGCTCCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224756.2
CDS-3UTR CAA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACCCACCAGCTGCTCATaGGCACTGAGGTCATCCGCG +
Preference number: 5 (lower is better)
Translates to: PPARLYPNSWYIAALCAVPTSCS*ALRSSA
Trigger: CGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 90 bp CATAGTCCTTACAGTGAGAGAAGGTCACCGTGTACTGTGCGTCCTTaGACTGCGGGGAGGGCACATCTGGGTCCACCACTGGAGCAGCCA +
Preference number: 5 (lower is better)
Translates to: HSPYSERRSPCTVRP*TAGRAHLGPPLEQP
Trigger: TGGCTGCTCCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTACACGGTGACCTTCTCTCACTGTAAGGACTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 90 bp CATGCAATGTCCTTGTCTTCGCATGGAGCGAGTCCACCTCCCAGATaGGGCTTCCGTTCCCAGCACACCTGTGGCCCCACACTTCAATCG +
Preference number: 5 (lower is better)
Translates to: HAMSLSSHGASPPPR*GFRSQHTCGPTLQS
Trigger: CGATTGAAGTGTGGGGCCACAGGTGTGCTGGGAACGGAAGCCCCATCTGGGAGGTGGACTCGCTCCATGCGAAGACAAGGACATTGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 90 bp ACTCGACCTCCTTTGTCGAGACGGCAAGCTGGTCTGAGCTGTCGCTaGAGGGGACTGCCATGTCAGACAGAGTGGCATTGGAGGCACTGT +
Preference number: 5 (lower is better)
Translates to: TRPPLSRRQAGLSCR*RGLPCQTEWHWRHC
Trigger: ACAGTGCCTCCAATGCCACTCTGTCTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp TCGACATACGGCCCCAGGACCTTATGCTCTCGGACTTTCAGAGACTaGCTGCTCCCTTTGGGGTCCAAGAGGTCCCGGACCTTCTCGTTA +
Preference number: 5 (lower is better)
Translates to: STYGPRTLCSRTFRD*LLPLGSKRSRTFSL
Trigger: TAACGAGAAGGTCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCGAGAGCATAAGGTCCTGGGGCCGTATGTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 90 bp AGTCACCACATAGTCCTTACAGTGAGAGAAGGTCACCGTGTACTGTaGGTCCTTGGACTGCGGGGAGGGCACATCTGGGTCCACCACTGG +
Preference number: 5 (lower is better)
Translates to: SHHIVLTVREGHRVL*VLGLRGGHIWVHHW
Trigger: CCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTACACGGTGACCTTCTCTCACTGTAAGGACTATGTGGTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS GCA 90 bp GAAGTAGCCACTGGTGAGGCTGCTGGTGGTAGGGCTACGGGACACTaGTTTCTCCAAGGCTCTCGAGTCTGTCAGGTCCGCCTTAGAAGA +
Preference number: 5 (lower is better)
Translates to: EVATGEAAGGRATGH*FLQGSRVCQVRLRR
Trigger: TCTTCTAAGGCGGACCTGACAGACTCGAGAGCCTTGGAGAAAGCAGTGTCCCGTAGCCCTACCACCAGCAGCCTCACCAGTGGCTACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 90 bp CCGAGGAAGCCTCGCTCGCAGCGTCTAGATCGTGCTCCGCGGAACTaGTTTCTCTCTCAAAGTCTTTCAACCAGTCCCGCCGTTTCCTCT +
Preference number: 5 (lower is better)
Translates to: PRKPRSQRLDRAPRN*FLSQSLSTSPAVSS
Trigger: AGAGGAAACGGCGGGACTGGTTGAAAGACTTTGAGAGAGAAACCAGTTCCGCGGAGCACGATCTAGACGCTGCGAGCGAGGCTTCCTCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CCA 90 bp CGGGTCACTTCATTCCACCTGTCATGCAATGTCCTTGTCTTCGCATaGAGCGAGTCCACCTCCCAGATGGGGCTTCCGTTCCCAGCACAC +
Preference number: 5 (lower is better)
Translates to: RVTSFHLSCNVLVFA*SESTSQMGLPFPAH
Trigger: GTGTGCTGGGAACGGAAGCCCCATCTGGGAGGTGGACTCGCTCCATGCGAAGACAAGGACATTGCATGACAGGTGGAATGAAGTGACCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 90 bp GTGAGTCCCTGGGTAAAGTCCCATAGCACGCGACGTCTTGGTAGCTaGAGCTGTAGTCAGACACGTCTAACTGGTTCTCGGGCCAGCCCT +
Preference number: 5 (lower is better)
Translates to: VSPWVKSHSTRRLGS*SCSQTRLTGSRASP
Trigger: AGGGCTGGCCCGAGAACCAGTTAGACGTGTCTGACTACAGCTCCAGCTACCAAGACGTCGCGTGCTATGGGACTTTACCCAGGGACTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp CCTGAGTGCTGTACAGGTTTCACTGTGACCTGCACTCTACGGGAGTaGCCCTGTCTGAGTTGGAAGACGCCGCCGGTGTTGACGTCTTTC +
Preference number: 5 (lower is better)
Translates to: PECCTGFTVTCTLRE*PCLSWKTPPVLTSF
Trigger: GAAAGACGTCAACACCGGCGGCGTCTTCCAACTCAGACAGGGTCACTCCCGTAGAGTGCAGGTCACAGTGAAACCTGTACAGCACTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS GCA 90 bp CATACGGCCCCAGGACCTTATGCTCTCGGACTTTCAGAGACTGCCTaGTCCCTTTGGGGTCCAAGAGGTCCCGGACCTTCTCGTTATAGA +
Preference number: 5 (lower is better)
Translates to: HTAPGPYALGLSETA*SLWGPRGPGPSRYR
Trigger: TCTATAACGAGAAGGTCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCGAGAGCATAAGGTCCTGGGGCCGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp CTGCCATTGCTTCCTGGGGTTACAATGCAGCCAGGGTTATGTGCCTaGGATGGAGGCATGCTCTCTTGGCTTAGGAGAGGTCTGGCTTCC +
Preference number: 5 (lower is better)
Translates to: LPLLPGVTMQPGLCA*DGGMLSWLRRGLAS
Trigger: GGAAGCCAGACCTCTCCTAAGCCAAGAGAGCATGCCTCCATCCCAGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGATGGACAACCTTCCTaGCTCCTGCGAGGTGAGTCC +
Preference number: 5 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQDGQPS*LLRGES
Trigger: GGACTCACCTCGCAGGAGCAAGGAAGGTTGTCCATC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp TCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGTGACCTGGAGAGGCATGTCAGACAGAGTGGCATaGGAGGCACTGTGGGAGAAG +
Preference number: 5 (lower is better)
Translates to: SQGGIDERSCQAVTWRGMSDRVA*EALWEK
Trigger: CTTCTCCCACAGTGCCTCCAATGCCACTCTGTCTGA...CATGCCTCTCCAGGTCACAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACCAGCGGCACAGCGATaGTCTCATCCTTCCCTGAGC +
Preference number: 5 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQPAAQR*SHPSLS
Trigger: GCTCAGGGAAGGATGAGACAATCGCTGTGCCGCTGG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS TCA 90 bp GCACGGTGGTCTTCACGATCAGGTAGATCCTTTCATTCTGCGGTGTaGCCCGATTCAGGTGAAGAGAGTCGTGCACAGAGGAGTCCCAGG +
Preference number: 5 (lower is better)
Translates to: ARWSSRSGRSFHSAV*PDSGEESRAQRSPR
Trigger: CCTGGGACTCCTCTGTGCACGACTCTCTTCACCTGAATCGGGTCACACCGCAGAATGAAAGGATCTACCTGATCGTGAAGACCACCGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp TCGTCACCTCTCCTGGGCAGAATTCTCTGGCTTGGTGGCCATCTTTaGTGGGGCCGACATCCAGTTCTGAACATGAAGCAGTCCTGCATG +
Preference number: 5 (lower is better)
Translates to: SSPLLGRILWLGGHL*WGRHPVLNMKQSCM
Trigger: CATGCAGGACTGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CCA 90 bp TCACCTCTCCTGGGCAGAATTCTCTGGCTTGGTGGCCATCTTTGCTaGGGCCGACATCCAGTTCTGAACATGAAGCAGTCCTGCATGGCA +
Preference number: 5 (lower is better)
Translates to: SPLLGRILWLGGHLC*GRHPVLNMKQSCMA
Trigger: TGCCATGCAGGACTGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAGAGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CAA 90 bp AGCTGTGATTCGCCATGGAACAAAGTGCTGCTTCTCCCACTGGGGAGGGGAAGTCTCCAGGGCGATCCTTaGAAACAGAGCACAGCAGAG +
Preference number: 5 (lower is better)
Translates to: SCDSPWNKVLLLPLGRGSLQGDP*KQSTAE
Trigger: CTCTGCTGTGCTCTGTTTCAAAGGATCGCCCTGGAG...ACTTCCCCTCCCCAGTGGGAGAAGCAGCACTTTGTTCCATGGCGAATCACAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS TCA 90 bp TCTTCATCGAAGCCAGAGAGATCTGGCCGGCTAGAGGAGACGTTGTaGACGTTCGGTGTACTGAGGCTTCTCCGAATGTGCCTCGCTTTG +
Preference number: 5 (lower is better)
Translates to: SSSKPERSGRLEETL*TFGVLRLLRMCLAL
Trigger: CAAAGCGAGGCACATTCGGAGAAGCCTCAGTACACCGAACGTTCACAACGTCTCCTCTAGCCGGCCAGATCTCTCTGGCTTCGATGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp GAAGAGGATCTTCAGGTAGGACCACCACGGGGAAGACCACCAGGCTaGCAGGCTTACGATGGGGAAGCCACCATTGCTGTTCAGTGTTTT +
Preference number: 5 (lower is better)
Translates to: EEDLQVGPPRGRPPG*QAYDGEATIAVQCF
Trigger: AAAACACTGAACAGCAATGGTGGCTTCCCCATCGTAAGCCTGTCAGCCTGGTGGTCTTCCCCGTGGTGGTCCTACCTGAAGATCCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238722.2
CDS GCA 90 bp CATCTTTGCTGGGGCCGACATCCAGTTCTGAACATGAAGCAGTCCTaGATGGCATTCTGGAACTTTCCTCAGGGATGCTCTGGGGTGACG +
Preference number: 5 (lower is better)
Translates to: HLCWGRHPVLNMKQS*MAFWNFPQGCSGVT
Trigger: CGTCACCCCAGAGCATCCCTGAGGAAAGTTCCAGAATGCCATGCAGGACTGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CCA 90 bp ATTTTGCTCCAGGGCGATCCTTTGAAACAGAGCACAGCAGAGCCTTaGGATAAGGCCCAGCTGCTCTGCGTGGCCCATCATGGAAAAGGA +
Preference number: 5 (lower is better)
Translates to: ILLQGDPLKQSTAEP*DKAQLLCVAHHGKG
Trigger: TCCTTTTCCATGATGGGCCACGCAGAGCAGCTGGGCCTTATCCCAAGGCTCTGCTGTGCTCTGTTTCAAAGGATCGCCCTGGAGCAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp CTCATATCAATTAGCTTATTCTCCAGCTTCTCAATGGTCCAGACCTaGGTGCCCTTCCCTTTCCTCCTGGCTTGGATGGCGGGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: LISISLFSSFSMVQT*VPFPFLLAWMAGSL
Trigger: CAGCGAGCCCGCCATCCAAGCCAGGAGGAAAGGGAAGGGCACCCAGGTCTGGACCATTGAGAAGCTGGAGAATAAGCTAATTGATATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp AATTCAAGTCTTCTTCCTGGTAGCTGTCCAGCCCTCTCTGCAGCTTaGTGGACCTGGCGGTCACGCAGCCAATGGATACTGATAGGATGG +
Preference number: 5 (lower is better)
Translates to: NSSLLPGSCPALSAA*WTWRSRSQWILIGW
Trigger: CCATCCTATCAGTATCCATTGGCTGCGTGACCGCCAGGTCCACCAAGCTGCAGAGAGGGCTGGACAGCTACCAGGAAGAAGACTTGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225591.2
CDS CCA 90 bp GGGTTTGCTACTGTGTTCTACTGGCATGCTGCTGCCATTGCTTCCTaGGGTTACAATGCAGCCAGGGTTATGTGCCTGGGATGGAGGCAT +
Preference number: 5 (lower is better)
Translates to: GFATVFYWHAAAIAS*GYNAARVMCLGWRH
Trigger: ATGCCTCCATCCCAGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACGGATGACCTTGGCATaGGGGTCCTCATTCACCACA +
Preference number: 5 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQRMTLA*GSSFTT
Trigger: TGTGGTGAATGAGGACCCCAATGCCAAGGTCATCCG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GTTACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGATAGCACGCGACGTCTaGGTAGCTGGAGCTGTAGTC +
Preference number: 5 (lower is better)
Translates to: VTAVRFLSVLRKGDRDQGIARDV*VAGAVV
Trigger: GACTACAGCTCCAGCTACCAAGACGTCGCGTGCTAT...CCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp ACTGGAGCAGCCACTGTAGACTCACACTGGTCCCAGAACGTGTACTaGCAGAAGACGAAATTTGAGAGGCTTATGGGTAGCCCGGTTGCC +
Preference number: 5 (lower is better)
Translates to: TGAATVDSHWSQNVY*QKTKFERLMGSPVA
Trigger: GGCAACCGGGCTACCCATAAGCCTCTCAAATTTCGTCTTCTGTCAGTACACGTTCTGGGACCAGTGTGAGTCTACAGTGGCTGCTCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 90 bp AGTCCCAGGAGGCTGTGGCTGAAACCTCGTCATCACTGTGCTTTATaGTGGGCAGGTAGAAAAACTGACTGCCGTGTTCCTTGGGCAGGA +
Preference number: 5 (lower is better)
Translates to: SPRRLWLKPRHHCAL*WAGRKTDCRVPWAG
Trigger: TCCTGCCCAAGGAACACGGCAGTCAGTTTTTCTACCTGCCCATCATAAAGCACAGTGATGACGAGGTTTCAGCCACAGCCTCCTGGGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp GGCACTGTTTTCCTCCAGCGGCACAGCGATTGTCTCATCCTTCCCTaGGCCTCTTCCTACTTCTGTAAGCTCCTGATTCGAAGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: GTVFLQRHSDCLILP*ASSYFCKLLIRSWS
Trigger: AGACCAGCTTCGAATCAGGAGCTTACAGAAGTAGGAAGAGGCTCAGGGAAGGATGAGACAATCGCTGTGCCGCTGGAGGAAAACAGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS GCA 90 bp GGACCTTGCATTTTCTTTGGGCGTGAGAGTGATGTCTCCATCCGCTaGGATGTCGATCTCACAGTGCTCGGGCTGAATCCCTATTCCGAA +
Preference number: 5 (lower is better)
Translates to: GPCIFFGRESDVSIR*DVDLTVLGLNPYSE
Trigger: TTCGGAATAGGGATTCAGCCCGAGCACTGTGAGATCGACATCGCAGCGGATGGAGACATCACTCTCACGCCCAAAGAAAATGCAAGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 90 bp CAGCTGGGTAGTACTGCAGACAAGGGTGCCATTGACACAGGACCTTaGATTTTCTTTGGGCGTGAGAGTGATGTCTCCATCCGCTGCGAT +
Preference number: 5 (lower is better)
Translates to: QLGSTADKGAIDTGP*IFFGRESDVSIRCD
Trigger: ATCGCAGCGGATGGAGACATCACTCTCACGCCCAAAGAAAATGCAAGGTCCTGTGTCAATGGCACCCTTGTCTGCAGTACTACCCAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 90 bp GCTAGGAAGTTGGCTTCCCTCACCAAAGTGTTGGCTTTCACCAGCTaGTCTCGAAGCTTGGCCAAGCTCTGCCTAAAGAGTTCATCCCTC +
Preference number: 5 (lower is better)
Translates to: ARKLASLTKVLAFTS*SRSLAKLCLKSSSL
Trigger: GAGGGATGAACTCTTTAGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGAAGCCAACTTCCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 90 bp TCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATGCTGCTGCCATTaGTTCCTGGGGTTACAATGCAGCCAGGGTTATGTGCCTGGGATG +
Preference number: 5 (lower is better)
Translates to: SSRVCYCVLLACCCH*FLGLQCSQGYVPGM
Trigger: CATCCCAGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS GCA 90 bp CCAGCTCGTTTTCCTCCTCTTCCGAGTCAATCTTCTTCTCGGGTTTaGTACTGTGTTCTACTGGCATGCTGCTGCCATTGCTTCCTGGGG +
Preference number: 5 (lower is better)
Translates to: PARFPPLPSQSSSRV*YCVLLACCCHCFLG
Trigger: CCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGACTCGGAAGAGGAGGAAAACGAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 90 bp CCAGGACCTTATGCTCTCGGACTTTCAGAGACTGCCTGCTCCCTTTaGGGTCCAAGAGGTCCCGGACCTTCTCGTTATAGATCTCCATAT +
Preference number: 5 (lower is better)
Translates to: PGPYALGLSETACSL*GPRGPGPSRYRSPY
Trigger: ATATGGAGATCTATAACGAGAAGGTCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCGAGAGCATAAGGTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp GTGTGTTCTATCGTCACCTCTCCTGGGCAGAATTCTCTGGCTTGGTaGCCATCTTTGCTGGGGCCGACATCCAGTTCTGAACATGAAGCA +
Preference number: 5 (lower is better)
Translates to: VCSIVTSPGQNSLAW*PSLLGPTSSSEHEA
Trigger: TGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGATAGAACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CAA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCCTGTTGGCACTGAGGTaGGCCGCAGGGATCTGCAGA +
Preference number: 5 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLLLALR*AAGICR
Trigger: TCTGCAGATCCCTGCGGCCAACCTCAGTGCCAACAG...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAGCCCTCTCTGCAGCTaGGTGGACCTGGCGGTCACG +
Preference number: 5 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNSPLCS*VDLAVT
Trigger: CGTGACCGCCAGGTCCACCAAGCTGCAGAGAGGGCT...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCAGCCCTCTCTGCAGCTaGGTGGACCTGGCGGTCACG +
Preference number: 5 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTSPLCS*VDLAVT
Trigger: CGTGACCGCCAGGTCCACCAAGCTGCAGAGAGGGCT...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 90 bp TCGACTTTGAAGGTCTGTGACTCATTTTGCTCCAGGGCGATCCTTTaGAACAGAGCACAGCAGAGCCTTGGGATAAGGCCCAGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: STLKVCDSFCSRAIL*NRAQQSLGIRPSCS
Trigger: AGAGCAGCTGGGCCTTATCCCAAGGCTCTGCTGTGCTCTGTTTCAAAGGATCGCCCTGGAGCAAAATGAGTCACAGACCTTCAAAGTCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 90 bp GCTGCTGTCGACCACTTCAAGACTCCCGCTCTCACTAGAGTTCTCTaGAGAGTCATCCTCCGCCATGCGTTCTGGAATGGTTCCTGTAAT +
Preference number: 5 (lower is better)
Translates to: AAVDHFKTPALTRVL*RVILRHAFWNGSCN
Trigger: ATTACAGGAACCATTCCAGAACGCATGGCGGAGGATGACTCTTCAGAGAACTCTAGTGAGAGCGGGAGTCTTGAAGTGGTCGACAGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 90 bp GTAGTGTGTTCTATCGTCACCTCTCCTGGGCAGAATTCTCTGGCTTaGTGGCCATCTTTGCTGGGGCCGACATCCAGTTCTGAACATGAA +
Preference number: 5 (lower is better)
Translates to: VVCSIVTSPGQNSLA*WPSLLGPTSSSEHE
Trigger: TTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGATAGAACACACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CCA 90 bp CTCTTCCGAGTCAATCTTCTTCTCGGGTTTGCTACTGTGTTCTACTaGCATGCTGCTGCCATTGCTTCCTGGGGTTACAATGCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: LFRVNLLLGFATVFY*HAAAIASWGYNAAR
Trigger: CCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGACTCGGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTTCTACCAGGCTCACCTaGCTGACCTTCTCCCCGGAG +
Preference number: 5 (lower is better)
Translates to: GQLTIHTNSSLSRESPISSTRLT*LTFSPE
Trigger: CTCCGGGGAGAAGGTCAGCAAGGTGAGCCTGGTAGA...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGGACCTTGCATTTTCTTaGGGCGTGAGAGTGATGTCT +
Preference number: 5 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLDLAFS*GVRVMS
Trigger: AGACATCACTCTCACGCCCAAAGAAAATGCAAGGTC...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGCGCCTCTCTTCCTGTaGGCACTGAGGTTGGCCGCA +
Preference number: 5 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTAPLFL*ALRLAA
Trigger: TGCGGCCAACCTCAGTGCCAACAGGAAGAGAGGCGC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp ACAGCTGTGCGATTTCTCAGTGTGCTTAGGAAAGGGGACAGGGACCAAGGGCAGGACAGAAGACGAAATTaGAGAGGCTTATGGGTAGCC +
Preference number: 5 (lower is better)
Translates to: TAVRFLSVLRKGDRDQGQDRRRN*RGLWVA
Trigger: GGCTACCCATAAGCCTCTCAAATTTCGTCTTCTGTC...CTGCCCTTGGTCCCTGTCCCCTTTCCTAAGCACACTGAGAAATCGCACAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS GCA 90 bp CAATCTTCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATGCTGCTaGCATTGCTTCCTGGGGTTACAATGCAGCCAGGGTTATGTGCCT +
Preference number: 5 (lower is better)
Translates to: QSSSRVCYCVLLACC*HCFLGLQCSQGYVP
Trigger: AGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS GCA 90 bp CCGAGTCAATCTTCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATaGTGCTGCCATTGCTTCCTGGGGTTACAATGCAGCCAGGGTTAT +
Preference number: 5 (lower is better)
Translates to: PSQSSSRVCYCVLLA*CCHCFLGLQCSQGY
Trigger: ATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGACTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAATCAAAGGCAAACACCTaGGGAGGTTTTCTTTCTCCC +
Preference number: 5 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQSKANT*GGFLSP
Trigger: GGGAGAAAGAAAACCTCCCAAGGTGTTTGCCTTTGA...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTGATGGACAACCTTCCTaGCTCCTGCGAGGTGAGTCC +
Preference number: 5 (lower is better)
Translates to: VNIESVGTRLCGRLKVTADGQPS*LLRGES
Trigger: GGACTCACCTCGCAGGAGCAAGGAAGGTTGTCCATC...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCCCAGCGGCACAGCGATaGTCTCATCCTTCCCTGAGC +
Preference number: 5 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTPAAQR*SHPSLS
Trigger: GCTCAGGGAAGGATGAGACAATCGCTGTGCCGCTGG...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTAAAACCATCAAAGTCTTaGCCATCAGAAACACCCATG +
Preference number: 5 (lower is better)
Translates to: PPARLYPNSWYIAALCAVKPSKS*PSETPM
Trigger: CATGGGTGTTTCTGATGGCAAAGACTTTGATGGTTT...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 90 bp AGTCAATCTTCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATGCTaGTGCCATTGCTTCCTGGGGTTACAATGCAGCCAGGGTTATGTG +
Preference number: 5 (lower is better)
Translates to: SQSSSRVCYCVLLAC*CHCFLGLQCSQGYV
Trigger: CACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCCTCTCCTCATTCATGTaGGTCGCTGCTACCGTTCGA +
Preference number: 5 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLLSSFM*VAATVR
Trigger: TCGAACGGTAGCAGCGACCAACATGAATGAGGAGAG...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCAGCTCTCGGATGACCTaGGCATTGGGGTCCTCATTC +
Preference number: 5 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSSSRMT*ALGSSF
Trigger: GAATGAGGACCCCAATGCCAAGGTCATCCGAGAGCT...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GGTCAGCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTTCCTCGGCTAGGAAGTaGGCTTCCCTCACCAAAGTG +
Preference number: 5 (lower is better)
Translates to: GQLTIHTNSSLSRESPISSSARK*ASLTKV
Trigger: CACTTTGGTGAGGGAAGCCAACTTCCTAGCCGAGGA...AGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGCTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTATAGCACGCGACGTCTaGGTAGCTGGAGCTGTAGTC +
Preference number: 5 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAIARDV*VAGAVV
Trigger: GACTACAGCTCCAGCTACCAAGACGTCGCGTGCTAT...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp CTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACAAAGTCCTCAGACAGAGTGGCATaGGAGGCACTGTGGGAGAAG +
Preference number: 5 (lower is better)
Translates to: LLICSCQSSQLGHFVTKSSDRVA*EALWEK
Trigger: CTTCTCCCACAGTGCCTCCAATGCCACTCTGTCTGA...GGACTTTGTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTCCAGCGGCACAGCGATaGTCTCATCCTTCCCTGAGC +
Preference number: 5 (lower is better)
Translates to: ELKNQKSTADCTHALSLPPAAQR*SHPSLS
Trigger: GCTCAGGGAAGGATGAGACAATCGCTGTGCCGCTGG...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp AGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTGAAACCATCAAAGTCTTaGCCATCAGAAACACCCATG +
Preference number: 5 (lower is better)
Translates to: RWSMDCPRVGLMNEAAKLKPSKS*PSETPM
Trigger: CATGGGTGTTTCTGATGGCAAAGACTTTGATGGTTT...CAGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CCA 90 bp CTGGGATACCTTTATGGTCTGTTTCGTTTGTTAGAGCCCTCCTCCTaGAGGGCTCCCCTACAGAACAATCTGCCAAACCATCAAAGTCTT +
Preference number: 5 (lower is better)
Translates to: LGYLYGLFRLLEPSS*RAPLQNNLPNHQSL
Trigger: AAGACTTTGATGGTTTGGCAGATTGTTCTGTAGGGGAGCCCTCCAGGAGGAGGGCTCTAACAAACGAAACAGACCATAAAGGTATCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CAA 90 bp CCGCCAGCAAGGCTGTACCCCAACTCTTGGTACATCGCTGCGTTGTGTGCAGTACTTGAAAACGACTTCTaGACCAGCATATTTTGTTGT +
Preference number: 5 (lower is better)
Translates to: PPARLYPNSWYIAALCAVLENDF*TSIFCC
Trigger: ACAACAAAATATGCTGGTCAAGAAGTCGTTTTCAAG...TACTGCACACAACGCAGCGATGTACCAAGAGTTGGGGTACAGCCTTGCTGGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCAATTTGTTTTTGCCTTaGCCAGCAGCCTGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLNLFLP*PAAWSA
Trigger: GGCTGACCAGGCTGCTGGCAAAGGCAAAAACAAATT...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp CTGAAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAACTGTTCCCTCCTAAATaGTCCTTAAGAAGCCAAGTA +
Preference number: 5 (lower is better)
Translates to: LKMEHGLSQGGIDERSCQLFPPK*SLRSQV
Trigger: TACTTGGCTTCTTAAGGACAATTTAGGAGGGAACAG...TTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTTCCCTCACCAAAGTGTaGGCTTTCACCAGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: VNIESVGTRLCGRLKVTASLTKV*AFTSCS
Trigger: AGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGA...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCCCACCAGCTGCTCATaGGCACTGAGGTCATCCGCG +
Preference number: 5 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSPTSCS*ALRSSA
Trigger: CGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGG...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp AAGATGGAGCATGGACTGTCCCAGGGTGGGATTGATGAACGAAGCTGCCAAGCTAAACCATCAAAGTCTTaGCCATCAGAAACACCCATG +
Preference number: 5 (lower is better)
Translates to: KMEHGLSQGGIDERSCQAKPSKS*PSETPM
Trigger: CATGGGTGTTTCTGATGGCAAAGACTTTGATGGTTT...AGCTTGGCAGCTTCGTTCATCAATCCCACCCTGGGACAGTCCATGCTCCATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CAA 90 bp GTCAATATCGAGTCAGTAGGTACCAGGCTATGTGGAAGACTGAAGGTTACAGCTCAGACAAGGGTGCCATaGACACAGGACCTTGCATTT +
Preference number: 5 (lower is better)
Translates to: VNIESVGTRLCGRLKVTAQTRVP*TQDLAF
Trigger: AAATGCAAGGTCCTGTGTCAATGGCACCCTTGTCTG...AGCTGTAACCTTCAGTCTTCCACATAGCCTGGTACCTACTGACTCGATATTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS TCA 90 bp CCCGGACCTTCTCGTTATAGATCTCCATATACGATACCTCGACTTTaGAGGTCTGTGACTCATTTTGCTCCAGGGCGATCCTTTGAAACA +
Preference number: 5 (lower is better)
Translates to: PGPSRYRSPYTIPRL*RSVTHFAPGRSFET
Trigger: TGTTTCAAAGGATCGCCCTGGAGCAAAATGAGTCACAGACCTTCAAAGTCGAGGTATCGTATATGGAGATCTATAACGAGAAGGTCCGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS-3UTR CAA 90 bp AGATATGCTTCTCATCTGCTCCTGTCAAAGCAGTCAACTGGGTCACTTTGTAACTGTGTGATGATGATGTaGAAGACCGCATGGGAACGG +
Preference number: 5 (lower is better)
Translates to: RYASHLLLSKQSTGSLCNCVMMM*KTAWER
Trigger: CCGTTCCCATGCGGTCTTCAACATCATCATCACACA...GTTACAAAGTGACCCAGTTGACTGCTTTGACAGGAGCAGATGAGAAGCATATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTGGCACGAATTTGTTTTaGCCTTTGCCAGCAGCCTGG +
Preference number: 5 (lower is better)
Translates to: ELKNQKSTADCTHALSLPGTNLF*PLPAAW
Trigger: CCAGGCTGCTGGCAAAGGCAAAAACAAATTCGTGCC...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS TCA 90 bp CTCGTTATAGATCTCCATATACGATACCTCGACTTTGAAGGTCTGTaGCTCATTTTGCTCCAGGGCGATCCTTTGAAACAGAGCACAGCA +
Preference number: 5 (lower is better)
Translates to: LVIDLHIRYLDFEGL*LILLQGDPLKQSTA
Trigger: TGCTGTGCTCTGTTTCAAAGGATCGCCCTGGAGCAAAATGAGTCACAGACCTTCAAAGTCGAGGTATCGTATATGGAGATCTATAACGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS-3UTR CAA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCAGGGATTTGTTAATGTaGCTGCCTTCTTTCAGCCGC +
Preference number: 5 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTRDLLM*LPSFSR
Trigger: GCGGCTGAAAGAAGGCAGCAACATTAACAAATCCCT...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GCTCACTATACACACAAACAGCAGCTTGTCAAGAGAGTCTCCCATATCTCCCTCGATGGGTACTGCATATaGAAGCTTCACATCACAGAA +
Preference number: 5 (lower is better)
Translates to: AHYTHKQQLVKRVSHISLDGYCI*KLHITE
Trigger: TTCTGTGATGTGAAGCTTCAATATGCAGTACCCATC...GAGGGAGATATGGGAGACTCTCTTGACAAGCTGCTGTTTGTGTGTATAGTGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp AATGCTAAGAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTGGCATGCTGCTGCCATaGCTTCCTGGGGTTACAATG +
Preference number: 5 (lower is better)
Translates to: NAKNLKTRKVQQTAHMLSGMLLP*LPGVTM
Trigger: CATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCC...AGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTCTTAGCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS-3UTR CAA 90 bp AAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGTATCTTCTTCTCGGGTTaGCTACTGTGTTCTACTGGC +
Preference number: 5 (lower is better)
Translates to: KSSICLSVCRYVSGQTYRIFFSG*LLCSTG
Trigger: GCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGAT...ACGGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 90 bp TCAAAGTCTTTGCCATCAGAAACACCCATGAACTCTGTGAAGGAATaGTCCTCCAAAATGTTTGTAGTGTGTTCTATCGTCACCTCTCCT +
Preference number: 5 (lower is better)
Translates to: SKSLPSETPMNSVKE*SSKMFVVCSIVTSP
Trigger: AGGAGAGGTGACGATAGAACACACTACAAACATTTTGGAGGACCATTCCTTCACAGAGTTCATGGGTGTTTCTGATGGCAAAGACTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS-3UTR CAA 90 bp ACAAATCATCTATCTGCCTTTCAGTGTGCAGATATGTCTCCGGACAGACATACCGACCTGAACCACATTTaGAACTGGATCATTGCTGTT +
Preference number: 5 (lower is better)
Translates to: TNHLSAFQCADMSPDRHTDLNHI*NWIIAV
Trigger: AACAGCAATGATCCAGTTCAAAATGTGGTTCAGGTC...GGTATGTCTGTCCGGAGACATATCTGCACACTGAAAGGCAGATAGATGATTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS-3UTR CAA 90 bp GAACTTAAAAACCAGAAAAGTACAGCAGACTGCACACATGCTCTCTCACTTCCTTACGATACCTCGACTTaGAAGGTCTGTGACTCATTT +
Preference number: 5 (lower is better)
Translates to: ELKNQKSTADCTHALSLPYDTST*KVCDSF
Trigger: AAATGAGTCACAGACCTTCAAAGTCGAGGTATCGTA...AGGAAGTGAGAGAGCATGTGTGCAGTCTGCTGTACTTTTCTGGTTTTTAAGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS GCA 72 bp CTGTCTGGCTGCTGTAGGCCAGACGGTCTGAGGCGCTaGTGGGCGGCTGCCTCTCGGGAGAGAGCTGCTGGC +
Preference number: 6 (lower is better)
Translates to: LSGCCRPDGLRR*WAAASRERAAG
Trigger: GCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGCCTCAGACCGTCTGGCCTACAGCAGCCAGACAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS GCA 72 bp CGGCCCACTGGGTCACCTTCTGCTGGGCTGTCTGGCTaGTGTAGGCCAGACGGTCTGAGGCGCTGCTGGGCG +
Preference number: 6 (lower is better)
Translates to: RPTGSPSAGLSG*CRPDGLRRCWA
Trigger: CGCCCAGCAGCGCCTCAGACCGTCTGGCCTACAGCAGCCAGACAGCCCAGCAGAAGGTGACCCAGTGGGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS GCA 72 bp TGTTTCCATGCCAGGAGGTGGGACCCAGTCAGCAGGTaGCCCGGGGATTCCGCTGCCAGGGGCGGGCACCAG +
Preference number: 6 (lower is better)
Translates to: CFHARRWDPVSR*PGDSAARGGHQ
Trigger: CTGGTGCCCGCCCCTGGCAGCGGAATCCCCGGGGCACCTGCTGACTGGGTCCCACCTCCTGGCATGGAAACA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp GAGGCGCTGCTGGGCGGCTGCCTCTCGGGAGAGAGCTaGTGGCGAAGCTGCTCCAGCTCGCGTTCGTACATG +
Preference number: 6 (lower is better)
Translates to: EALLGGCLSGES*WRSCSSSRSYM
Trigger: CATGTACGAACGCGAGCTGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGCCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CCA 72 bp GCGCTGCTGGGCGGCTGCCTCTCGGGAGAGAGCTGCTaGCGAAGCTGCTCCAGCTCGCGTTCGTACATGAGC +
Preference number: 6 (lower is better)
Translates to: ALLGGCLSGESC*RSCSSSRSYMS
Trigger: GCTCATGTACGAACGCGAGCTGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCCCAGCAGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CAA 90 bp CCGGTGCAAGTGATGGTCCCGGGGGCTCGGCGCACTCGACCTCCTTaGTCGAGACGGCAAGCTGGTCTGAGCTGTCGCTGGAGGGGACTG +
Preference number: 6 (lower is better)
Translates to: PVQVMVPGARRTRPP*SRRQAGLSCRWRGL
Trigger: CAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGTGCGCCGAGCCCCCGGGACCATCACTTGCACCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp GGCGGCTGCCTCTCGGGAGAGAGCTGCTGGCGAAGCTaGTCCAGCTCGCGTTCGTACATGAGCCGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: GGCLSGESCWRS*SSSRSYMSRCS
Trigger: GGAACAGCGGCTCATGTACGAACGCGAGCTGGAGCAGCTTCGCCAGCAGCTCTCTCCCGAGAGGCAGCCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CAA 72 bp GTGATGGTCCCGGGGGCTCGGCGCACTCGACCTCCTTaGTCGAGACGGCAAGCTGGTCTGAGCTGTCGCTGG +
Preference number: 6 (lower is better)
Translates to: VMVPGARRTRPP*SRRQAGLSCRW
Trigger: CCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGTGCGCCGAGCCCCCGGGACCATCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp GTCCAGACCTGGGTGCCCTTCCCTTTCCTCCTGGCTTaGATGGCGGGCTCGCTGACGATTGCGCCTCTCTTC +
Preference number: 6 (lower is better)
Translates to: VQTWVPFPFLLA*MAGSLTIAPLF
Trigger: GAAGAGAGGCGCAATCGTCAGCGAGCCCGCCATCCAAGCCAGGAGGAAAGGGAAGGGCACCCAGGTCTGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 72 bp CGGACGCATGGGGGCCCACCAGCTGCTCATTGGCACTaGGGTCATCCGCGTTCAGATCCAGGAAGAGAACCG +
Preference number: 6 (lower is better)
Translates to: RTHGGPPAAHWH*GHPRSDPGREP
Trigger: CGGTTCTCTTCCTGGATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp GGCCCCAGGACCTTATGCTCTCGGACTTTCAGAGACTaGCTGCTCCCTTTGGGGTCCAAGAGGTCCCGGACC +
Preference number: 6 (lower is better)
Translates to: GPRTLCSRTFRD*LLPLGSKRSRT
Trigger: GGTCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCGAGAGCATAAGGTCCTGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 72 bp TTTCCTCCTGGCTTGGATGGCGGGCTCGCTGACGATTaGGCCTCTCTTCCTGTTGGCACTGAGGTTGGCCGC +
Preference number: 6 (lower is better)
Translates to: FPPGLDGGLADD*ASLPVGTEVGR
Trigger: GCGGCCAACCTCAGTGCCAACAGGAAGAGAGGCGCAATCGTCAGCGAGCCCGCCATCCAAGCCAGGAGGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp TCTGGAATGGTTCCTGTAATGCGCGTCACCTCCACATaGAGGCGCCCGGCAACCTCCCCCTGCTGGCTGATG +
Preference number: 6 (lower is better)
Translates to: SGMVPVMRVTST*RRPATSPCWLM
Trigger: CATCAGCCAGCAGGGGGAGGTTGCCGGGCGCCTCCATGTGGAGGTGACGCGCATTACAGGAACCATTCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp TCCTTGTCTTCGCATGGAGCGAGTCCACCTCCCAGATaGGGCTTCCGTTCCCAGCACACCTGTGGCCCCACA +
Preference number: 6 (lower is better)
Translates to: SLSSHGASPPPR*GFRSQHTCGPT
Trigger: TGTGGGGCCACAGGTGTGCTGGGAACGGAAGCCCCATCTGGGAGGTGGACTCGCTCCATGCGAAGACAAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 72 bp GAAGAGAACCGGGATGTGTGTTTCCATGCCAGGAGGTaGGACCCAGTCAGCAGGTGCCCCGGGGATTCCGCT +
Preference number: 6 (lower is better)
Translates to: EENRDVCFHARR*DPVSRCPGDSA
Trigger: AGCGGAATCCCCGGGGCACCTGCTGACTGGGTCCCACCTCCTGGCATGGAAACACACATCCCGGTTCTCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp TCGGCGCACTCGACCTCCTTTGTCGAGACGGCAAGCTaGTCTGAGCTGTCGCTGGAGGGGACTGCCATGTCA +
Preference number: 6 (lower is better)
Translates to: SAHSTSFVETAS*SELSLEGTAMS
Trigger: TGACATGGCAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGTGCGCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CAA 90 bp CTTCTCAATGGTCCAGACCTGGGTGCCCTTCCCTTTCCTCCTGGCTaGGATGGCGGGCTCGCTGACGATTGCGCCTCTCTTCCTGTTGGC +
Preference number: 6 (lower is better)
Translates to: LLNGPDLGALPFPPG*DGGLADDCASLPVG
Trigger: GCCAACAGGAAGAGAGGCGCAATCGTCAGCGAGCCCGCCATCCAAGCCAGGAGGAAAGGGAAGGGCACCCAGGTCTGGACCATTGAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 90 bp AGGATGGAGTTCACACCGGACGCATGGGGGCCCACCAGCTGCTCATaGGCACTGAGGTCATCCGCGTTCAGATCCAGGAAGAGAACCGGG +
Preference number: 6 (lower is better)
Translates to: RMEFTPDAWGPTSCS*ALRSSAFRSRKRTG
Trigger: CCCGGTTCTCTTCCTGGATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCGGTGTGAACTCCATCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 72 bp GCACTCGACCTCCTTTGTCGAGACGGCAAGCTGGTCTaGGCTGTCGCTGGAGGGGACTGCCATGTCAGACAG +
Preference number: 6 (lower is better)
Translates to: ALDLLCRDGKLV*AVAGGDCHVRQ
Trigger: CTGTCTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGGAGGTCGAGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp AGCTCGGGGGCCTTCATGGCCTCAGCCTGCGAGAGCTaGTCCCTCAGTTTCTCCACTTCCTCTCGAAGCTCT +
Preference number: 6 (lower is better)
Translates to: SSGAFMASACES*SLSFSTSSRSS
Trigger: AGAGCTTCGAGAGGAAGTGGAGAAACTGAGGGAGCAGCTCTCGCAGGCTGAGGCCATGAAGGCCCCCGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 72 bp TCAGATCCAGGAAGAGAACCGGGATGTGTGTTTCCATaGCAGGAGGTGGGACCCAGTCAGCAGGTGCCCCGG +
Preference number: 6 (lower is better)
Translates to: SDPGREPGCVFP*QEVGPSQQVPR
Trigger: CCGGGGCACCTGCTGACTGGGTCCCACCTCCTGGCATGGAAACACACATCCCGGTTCTCTTCCTGGATCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp ATGGAGTTCACACCGGACGCATGGGGGCCCACCAGCTaGTCATTGGCACTGAGGTCATCCGCGTTCAGATCC +
Preference number: 6 (lower is better)
Translates to: MEFTPDAWGPTS*SLALRSSAFRS
Trigger: GGATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCGGTGTGAACTCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp TGCCGGAGCCGCTCCAGGCTCAGGATATTCTCCACCTaGAGCACGCCCCGCGTGTACTTCTCGATGTATGTC +
Preference number: 6 (lower is better)
Translates to: CRSRSRLRIFST*STPRVYFSMYV
Trigger: GACATACATCGAGAAGTACACGCGGGGCGTGCTGCAGGTGGAGAATATCCTGAGCCTGGAGCGGCTCCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp ACTGGTGAGGCTGCTGGTGGTAGGGCTACGGGACACTaGTTTCTCCAAGGCTCTCGAGTCTGTCAGGTCCGC +
Preference number: 6 (lower is better)
Translates to: TGEAAGGRATGH*FLQGSRVCQVR
Trigger: GCGGACCTGACAGACTCGAGAGCCTTGGAGAAAGCAGTGTCCCGTAGCCCTACCACCAGCAGCCTCACCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp CTTGGACTGCGGGGAGGGCACATCTGGGTCCACCACTaGAGCAGCCACTGTAGACTCACACTGGTCCCAGAA +
Preference number: 6 (lower is better)
Translates to: LGLRGGHIWVHH*SSHCRLTLVPE
Trigger: TTCTGGGACCAGTGTGAGTCTACAGTGGCTGCTCCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 72 bp GTACTGTGCGTCCTTGGACTGCGGGGAGGGCACATCTaGGTCCACCACTGGAGCAGCCACTGTAGACTCACA +
Preference number: 6 (lower is better)
Translates to: VLCVLGLRGGHI*VHHWSSHCRLT
Trigger: TGTGAGTCTACAGTGGCTGCTCCAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 72 bp ACCTCCCAGATGGGGCTTCCGTTCCCAGCACACCTGTaGCCCCACACTTCAATCGCCAGCGCACCATCAGAA +
Preference number: 6 (lower is better)
Translates to: TSQMGLPFPAHL*PHTSIASAPSE
Trigger: TTCTGATGGTGCGCTGGCGATTGAAGTGTGGGGCCACAGGTGTGCTGGGAACGGAAGCCCCATCTGGGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 72 bp TGTTCCTTGGGCAGGATGGAGTTCACACCGGACGCATaGGGGCCCACCAGCTGCTCATTGGCACTGAGGTCA +
Preference number: 6 (lower is better)
Translates to: CSLGRMEFTPDA*GPTSCSLALRS
Trigger: TGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCGGTGTGAACTCCATCCTGCCCAAGGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CAA 72 bp TTCACACCGGACGCATGGGGGCCCACCAGCTGCTCATaGGCACTGAGGTCATCCGCGTTCAGATCCAGGAAG +
Preference number: 6 (lower is better)
Translates to: FTPDAWGPTSCS*ALRSSAFRSRK
Trigger: CTTCCTGGATCTGAACGCGGATGACCTCAGTGCCAATGAGCAGCTGGTGGGCCCCCATGCGTCCGGTGTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp GCGTGTACTTCTCGATGTATGTCTCCCCATCCAAAGTaGCCTCGTTCTCACTCCGCGCTGCCAGGAGGGCCA +
Preference number: 6 (lower is better)
Translates to: ACTSRCMSPHPK*PRSHSALPGGP
Trigger: TGGCCCTCCTGGCAGCGCGGAGTGAGAACGAGGGCACTTTGGATGGGGAGACATACATCGAGAAGTACACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp TACAGTGAGAGAAGGTCACCGTGTACTGTGCGTCCTTaGACTGCGGGGAGGGCACATCTGGGTCCACCACTG +
Preference number: 6 (lower is better)
Translates to: YSERRSPCTVRP*TAGRAHLGPPL
Trigger: CAGTGGTGGACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTACACGGTGACCTTCTCTCACTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 72 bp GGTAGAAAAACTGACTGCCGTGTTCCTTGGGCAGGATaGAGTTCACACCGGACGCATGGGGGCCCACCAGCT +
Preference number: 6 (lower is better)
Translates to: GRKTDCRVPWAG*SSHRTHGGPPA
Trigger: AGCTGGTGGGCCCCCATGCGTCCGGTGTGAACTCCATCCTGCCCAAGGAACACGGCAGTCAGTTTTTCTACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp CCTTTGTCGAGACGGCAAGCTGGTCTGAGCTGTCGCTaGAGGGGACTGCCATGTCAGACAGAGTGGCATTGG +
Preference number: 6 (lower is better)
Translates to: PLSRRQAGLSCR*RGLPCQTEWHW
Trigger: CCAATGCCACTCTGTCTGACATGGCAGTCCCCTCCAGCGACAGCTCAGACCAGCTTGCCGTCTCGACAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CAA 90 bp AGGTTTCACTGTGACCTGCACTCTACGGGAGTGACCCTGTCTGAGTaGGAAGACGCCGCCGGTGTTGACGTCTTTCGCCTGGTGAAGCTC +
Preference number: 6 (lower is better)
Translates to: RFHCDLHSTGVTLSE*EDAAGVDVFRLVKL
Trigger: GAGCTTCACCAGGCGAAAGACGTCAACACCGGCGGCGTCTTCCAACTCAGACAGGGTCACTCCCGTAGAGTGCAGGTCACAGTGAAACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS TCA 72 bp CTTCAGGTAGGACCACCACGGGGAAGACCACCAGGCTaGCAGGCTTACGATGGGGAAGCCACCATTGCTGTT +
Preference number: 6 (lower is better)
Translates to: LQVGPPRGRPPG*QAYDGEATIAV
Trigger: AACAGCAATGGTGGCTTCCCCATCGTAAGCCTGTCAGCCTGGTGGTCTTCCCCGTGGTGGTCCTACCTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238722.2
CDS GCA 72 bp CCAGGACCTTATGCTCTCGGACTTTCAGAGACTGCCTaGTCCCTTTGGGGTCCAAGAGGTCCCGGACCTTCT +
Preference number: 6 (lower is better)
Translates to: PGPYALGLSETA*SLWGPRGPGPS
Trigger: AGAAGGTCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCGAGAGCATAAGGTCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 72 bp GGCTCCGAGGAAGCCTCGCTCGCAGCGTCTAGATCGTaGTCCGCGGAACTGGTTTCTCTCTCAAAGTCTTTC +
Preference number: 6 (lower is better)
Translates to: GSEEASLAASRS*SAELVSLSKSF
Trigger: GAAAGACTTTGAGAGAGAAACCAGTTCCGCGGAGCACGATCTAGACGCTGCGAGCGAGGCTTCCTCGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS GCA 72 bp GCTTTCACCAGCTGCTCTCGAAGCTTGGCCAAGCTCTaGCTAAAGAGTTCATCCCTCTCCTCGGCCCACTGG +
Preference number: 6 (lower is better)
Translates to: AFTSCSRSLAKL*LKSSSLSSAHW
Trigger: CCAGTGGGCCGAGGAGAGGGATGAACTCTTTAGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp CAGGGCGATCCTTTGAAACAGAGCACAGCAGAGCCTTaGGATAAGGCCCAGCTGCTCTGCGTGGCCCATCAT +
Preference number: 6 (lower is better)
Translates to: QGDPLKQSTAEP*DKAQLLCVAHH
Trigger: ATGATGGGCCACGCAGAGCAGCTGGGCCTTATCCCAAGGCTCTGCTGTGCTCTGTTTCAAAGGATCGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp CCTCGCTCGCAGCGTCTAGATCGTGCTCCGCGGAACTaGTTTCTCTCTCAAAGTCTTTCAACCAGTCCCGCC +
Preference number: 6 (lower is better)
Translates to: PRSQRLDRAPRN*FLSQSLSTSPA
Trigger: GGCGGGACTGGTTGAAAGACTTTGAGAGAGAAACCAGTTCCGCGGAGCACGATCTAGACGCTGCGAGCGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
ENSMUST00000238722.2
CDS CCA 72 bp ACCGAGTGGCTGTGGCTTCCTGGTCGTTCTCTATCTTaGGATGCAGCCGGTCGGCATCTGGAGGTCTTTCTG +
Preference number: 6 (lower is better)
Translates to: TEWLWLPGRSLS*DAAGRHLEVFL
Trigger: CAGAAAGACCTCCAGATGCCGACCGGCTGCATCCCAAGATAGAGAACGACCAGGAAGCCACAGCCACTCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CAA 90 bp GCTTCCCTCACCAAAGTGTTGGCTTTCACCAGCTGCTCTCGAAGCTaGGCCAAGCTCTGCCTAAAGAGTTCATCCCTCTCCTCGGCCCAC +
Preference number: 6 (lower is better)
Translates to: ASLTKVLAFTSCSRS*AKLCLKSSSLSSAH
Trigger: GTGGGCCGAGGAGAGGGATGAACTCTTTAGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 72 bp TGTACAGGTTTCACTGTGACCTGCACTCTACGGGAGTaGCCCTGTCTGAGTTGGAAGACGCCGCCGGTGTTG +
Preference number: 6 (lower is better)
Translates to: CTGFTVTCTLRE*PCLSWKTPPVL
Trigger: CAACACCGGCGGCGTCTTCCAACTCAGACAGGGTCACTCCCGTAGAGTGCAGGTCACAGTGAAACCTGTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS GCA 72 bp ATAGTCCTTACAGTGAGAGAAGGTCACCGTGTACTGTaGGTCCTTGGACTGCGGGGAGGGCACATCTGGGTC +
Preference number: 6 (lower is better)
Translates to: IVLTVREGHRVL*VLGLRGGHIWV
Trigger: GACCCAGATGTGCCCTCCCCGCAGTCCAAGGACGCACAGTACACGGTGACCTTCTCTCACTGTAAGGACTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS GCA 72 bp GTGGCTGTGGCTTCCTGGTCGTTCTCTATCTTGGGATaGAGCCGGTCGGCATCTGGAGGTCTTTCTGGGATA +
Preference number: 6 (lower is better)
Translates to: VAVASWSFSILG*SRSASGGLSGI
Trigger: TATCCCAGAAAGACCTCCAGATGCCGACCGGCTGCATCCCAAGATAGAGAACGACCAGGAAGCCACAGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp TGCTTAGTGTTGGAAGGAGGAGGGTGCAGGACCGTCTaGTTCCCTTCCATCTCCACCACGCACTTGGTGTTC +
Preference number: 6 (lower is better)
Translates to: CLVLEGGGCRTV*FPSISTTHLVF
Trigger: GAACACCAAGTGCGTGGTGGAGATGGAAGGGAACCAGACGGTCCTGCACCCTCCTCCTTCCAACACTAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS CCA 72 bp CCTCGGCTAGGAAGTTGGCTTCCCTCACCAAAGTGTTaGCTTTCACCAGCTGCTCTCGAAGCTTGGCCAAGC +
Preference number: 6 (lower is better)
Translates to: PRLGSWLPSPKC*LSPAALEAWPS
Trigger: GCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGAAGCCAACTTCCTAGCCGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp ATGGACAACCTTCCTTGCTCCTGCGAGGTGAGTCCCTaGGTAAAGTCCCATAGCACGCGACGTCTTGGTAGC +
Preference number: 6 (lower is better)
Translates to: MDNLPCSCEVSP*VKSHSTRRLGS
Trigger: GCTACCAAGACGTCGCGTGCTATGGGACTTTACCCAGGGACTCACCTCGCAGGAGCAAGGAAGGTTGTCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp CTGCATGGCATTCTGGAACTTTCCTCAGGGATGCTCTaGGGTGACGGGGTCCCCTTGGGTAAGGCACTGTTT +
Preference number: 6 (lower is better)
Translates to: LHGILELSSGML*GDGVPLGKALF
Trigger: AAACAGTGCCTTACCCAAGGGGACCCCGTCACCCCAGAGCATCCCTGAGGAAAGTTCCAGAATGCCATGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CAA 72 bp AGGACCGTCTGGTTCCCTTCCATCTCCACCACGCACTaGGTGTTCAGTTCCAGCTCTCTTCGGTTCATGGGC +
Preference number: 6 (lower is better)
Translates to: RTVWFPSISTTH*VFSSSSLRFMG
Trigger: GCCCATGAACCGAAGAGAGCTGGAACTGAACACCAAGTGCGTGGTGGAGATGGAAGGGAACCAGACGGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS CAA 72 bp TTCGGTGTACTGAGGCTTCTCCGAATGTGCCTCGCTTaGGTGGAAAGCGCTTCCTTCACCGTGACAGCCTGC +
Preference number: 6 (lower is better)
Translates to: FGVLRLLRMCLA*VESASFTVTAC
Trigger: GCAGGCTGTCACGGTGAAGGAAGCGCTTTCCACCAAAGCGAGGCACATTCGGAGAAGCCTCAGTACACCGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CAA 72 bp TACCGAGTGGCTGTGGCTTCCTGGTCGTTCTCTATCTaGGGATGCAGCCGGTCGGCATCTGGAGGTCTTTCT +
Preference number: 6 (lower is better)
Translates to: YRVAVASWSFSI*GCSRSASGGLS
Trigger: AGAAAGACCTCCAGATGCCGACCGGCTGCATCCCAAGATAGAGAACGACCAGGAAGCCACAGCCACTCGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 72 bp AAGCCAGAGAGATCTGGCCGGCTAGAGGAGACGTTGTaGACGTTCGGTGTACTGAGGCTTCTCCGAATGTGC +
Preference number: 6 (lower is better)
Translates to: KPERSGRLEETL*TFGVLRLLRMC
Trigger: GCACATTCGGAGAAGCCTCAGTACACCGAACGTTCACAACGTCTCCTCTAGCCGGCCAGATCTCTCTGGCTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp CTCCTGGGCAGAATTCTCTGGCTTGGTGGCCATCTTTaGTGGGGCCGACATCCAGTTCTGAACATGAAGCAG +
Preference number: 6 (lower is better)
Translates to: LLGRILWLGGHL*WGRHPVLNMKQ
Trigger: CTGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CCA 72 bp TCATTCCACCTGTCATGCAATGTCCTTGTCTTCGCATaGAGCGAGTCCACCTCCCAGATGGGGCTTCCGTTC +
Preference number: 6 (lower is better)
Translates to: SFHLSCNVLVFA*SESTSQMGLPF
Trigger: GAACGGAAGCCCCATCTGGGAGGTGGACTCGCTCCATGCGAAGACAAGGACATTGCATGACAGGTGGAATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CCA 72 bp CTGGGCAGAATTCTCTGGCTTGGTGGCCATCTTTGCTaGGGCCGACATCCAGTTCTGAACATGAAGCAGTCC +
Preference number: 6 (lower is better)
Translates to: LGRILWLGGHLC*GRHPVLNMKQS
Trigger: GGACTGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CCA 72 bp CTTCCTGGGGTTACAATGCAGCCAGGGTTATGTGCCTaGGATGGAGGCATGCTCTCTTGGCTTAGGAGAGGT +
Preference number: 6 (lower is better)
Translates to: LPGVTMQPGLCA*DGGMLSWLRRG
Trigger: ACCTCTCCTAAGCCAAGAGAGCATGCCTCCATCCCAGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CAA 72 bp TCCTCGGCTAGGAAGTTGGCTTCCCTCACCAAAGTGTaGGCTTTCACCAGCTGCTCTCGAAGCTTGGCCAAG +
Preference number: 6 (lower is better)
Translates to: SSARKLASLTKV*AFTSCSRSLAK
Trigger: CTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGAAGCCAACTTCCTAGCCGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 72 bp TCCGGGTCACTTCATTCCACCTGTCATGCAATGTCCTaGTCTTCGCATGGAGCGAGTCCACCTCCCAGATGG +
Preference number: 6 (lower is better)
Translates to: SGSLHSTCHAMS*SSHGASPPPRW
Trigger: CCATCTGGGAGGTGGACTCGCTCCATGCGAAGACAAGGACATTGCATGACAGGTGGAATGAAGTGACCCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CAA 90 bp TTGCTCATCTCCTCGGCTAGGAAGTTGGCTTCCCTCACCAAAGTGTaGGCTTTCACCAGCTGCTCTCGAAGCTTGGCCAAGCTCTGCCTA +
Preference number: 6 (lower is better)
Translates to: LLISSARKLASLTKV*AFTSCSRSLAKLCL
Trigger: TAGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGAAGCCAACTTCCTAGCCGAGGAGATGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 90 bp ATCGTCACCTCTCCTGGGCAGAATTCTCTGGCTTGGTGGCCATCTTaGCTGGGGCCGACATCCAGTTCTGAACATGAAGCAGTCCTGCAT +
Preference number: 6 (lower is better)
Translates to: IVTSPGQNSLAWWPS*LGPTSSSEHEAVLH
Trigger: ATGCAGGACTGCTTCATGTTCAGAACTGGATGTCGGCCCCAGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS GCA 72 bp ATTTTCTTTGGGCGTGAGAGTGATGTCTCCATCCGCTaGGATGTCGATCTCACAGTGCTCGGGCTGAATCCC +
Preference number: 6 (lower is better)
Translates to: IFFGRESDVSIR*DVDLTVLGLNP
Trigger: GGGATTCAGCCCGAGCACTGTGAGATCGACATCGCAGCGGATGGAGACATCACTCTCACGCCCAAAGAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 72 bp AGGATGGCTTCAACCATGAGTGGCAGTGTCCCTGAGTaGTGTACAGGTTTCACTGTGACCTGCACTCTACGG +
Preference number: 6 (lower is better)
Translates to: RMASTMSGSVPE*CTGFTVTCTLR
Trigger: CCGTAGAGTGCAGGTCACAGTGAAACCTGTACAGCACTCAGGGACACTGCCACTCATGGTTGAAGCCATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS GCA 72 bp TCTCGGGTTTGCTACTGTGTTCTACTGGCATGCTGCTaGCATTGCTTCCTGGGGTTACAATGCAGCCAGGGT +
Preference number: 6 (lower is better)
Translates to: SRVCYCVLLACC*HCFLGLQCSQG
Trigger: ACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 72 bp TATGCTCTCGGACTTTCAGAGACTGCCTGCTCCCTTTaGGGTCCAAGAGGTCCCGGACCTTCTCGTTATAGA +
Preference number: 6 (lower is better)
Translates to: YALGLSETACSL*GPRGPGPSRYR
Trigger: TCTATAACGAGAAGGTCCGGGACCTCTTGGACCCCAAAGGGAGCAGGCAGTCTCTGAAAGTCCGAGAGCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp TGGGTAAAGTCCCATAGCACGCGACGTCTTGGTAGCTaGAGCTGTAGTCAGACACGTCTAACTGGTTCTCGG +
Preference number: 6 (lower is better)
Translates to: WVKSHSTRRLGS*SCSQTRLTGSR
Trigger: CCGAGAACCAGTTAGACGTGTCTGACTACAGCTCCAGCTACCAAGACGTCGCGTGCTATGGGACTTTACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp CCTCCTCTTCCGAGTCCTCTTGGCTTAGGAGAGGTCTaGCTTCCAGGGCCAACCTTTTCTTATGCTCCTCTT +
Preference number: 6 (lower is better)
Translates to: PPLPSPLGLGEV*LPGPTFSYAPL
Trigger: AAGAGGAGCATAAGAAAAGGTTGGCCCTGGAAGCCAGACCTCTCCTAAGCCAAGAGGACTCGGAAGAGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS CCA 72 bp GGGATGGAGGCATGCTCTCTTGGCTTAGGAGAGGTCTaGCTTCCAGGGCCAACCTTTTCTTATGCTCCTCTT +
Preference number: 6 (lower is better)
Translates to: GMEACSLGLGEV*LPGPTFSYAPL
Trigger: AAGAGGAGCATAAGAAAAGGTTGGCCCTGGAAGCCAGACCTCTCCTAAGCCAAGAGAGCATGCCTCCATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 72 bp ACTGTGTTCTACTGGCATGCTGCTGCCATTGCTTCCTaGGGTTACAATGCAGCCAGGGTTATGTGCCTGGGA +
Preference number: 6 (lower is better)
Translates to: TVFYWHAAAIAS*GYNAARVMCLG
Trigger: TCCCAGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CAA 72 bp TGGGTAAGGCACTGTTTTCCTCCAGCGGCACAGCGATaGTCTCATCCTTCCCTGAGCCTCTTCCTACTTCTG +
Preference number: 6 (lower is better)
Translates to: WVRHCFPPAAQR*SHPSLSLFLLL
Trigger: CAGAAGTAGGAAGAGGCTCAGGGAAGGATGAGACAATCGCTGTGCCGCTGGAGGAAAACAGTGCCTTACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CAA 72 bp TCAGAGAGTGGGTGGAAGTTCTGGTCGTTCTCTATCTaGGGATGCAGCCGGTCGGCATCTGGAGGTCTTTCT +
Preference number: 6 (lower is better)
Translates to: SESGWKFWSFSI*GCSRSASGGLS
Trigger: AGAAAGACCTCCAGATGCCGACCGGCTGCATCCCAAGATAGAGAACGACCAGAACTTCCACCCACTCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225836.2
CDS TCA 72 bp ACCACTCCCTGTTCTCCAAGCTGGCATTGTAAACACTaGAGTCAGCGAACTCCACGGGCACATAAGGCTGTG +
Preference number: 6 (lower is better)
Translates to: TTPCSPSWHCKH*SQRTPRAHKAV
Trigger: CACAGCCTTATGTGCCCGTGGAGTTCGCTGACTTCAGTGTTTACAATGCCAGCTTGGAGAACAGGGAGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS TCA 72 bp TTCCTCCAGCGGCACAGCGATTGTCTCATCCTTCCCTaGGCCTCTTCCTACTTCTGTAAGCTCCTGATTCGA +
Preference number: 6 (lower is better)
Translates to: FLQRHSDCLILP*ASSYFCKLLIR
Trigger: TCGAATCAGGAGCTTACAGAAGTAGGAAGAGGCTCAGGGAAGGATGAGACAATCGCTGTGCCGCTGGAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS GCA 72 bp TCAAAGGCAAACACCTTGGGAGGTTTTCTTTCTCCCTaGTTAGTGTTGGAAGGAGGAGGGTGCAGGACCGTC +
Preference number: 6 (lower is better)
Translates to: SKANTLGGFLSP*LVLEGGGCRTV
Trigger: GACGGTCCTGCACCCTCCTCCTTCCAACACTAAGCAGGGAGAAAGAAAACCTCCCAAGGTGTTTGCCTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056978.8
CDS GCA 72 bp TTGGCTTCCCTCACCAAAGTGTTGGCTTTCACCAGCTaGTCTCGAAGCTTGGCCAAGCTCTGCCTAAAGAGT +
Preference number: 6 (lower is better)
Translates to: LASLTKVLAFTS*SRSLAKLCLKS
Trigger: ACTCTTTAGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGTGAGGGAAGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS GCA 72 bp ACCTCTATTCTCCGGGTCACTTCATTCCACCTGTCATaGAATGTCCTTGTCTTCGCATGGAGCGAGTCCACC +
Preference number: 6 (lower is better)
Translates to: TSILRVTSFHLS*NVLVFAWSEST
Trigger: GGTGGACTCGCTCCATGCGAAGACAAGGACATTGCATGACAGGTGGAATGAAGTGACCCGGAGAATAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS GCA 72 bp TGGGGCCGACATCCAGTTCTGAACATGAAGCAGTCCTaGATGGCATTCTGGAACTTTCCTCAGGGATGCTCT +
Preference number: 6 (lower is better)
Translates to: WGRHPVLNMKQS*MAFWNFPQGCS
Trigger: AGAGCATCCCTGAGGAAAGTTCCAGAATGCCATGCAGGACTGCTTCATGTTCAGAACTGGATGTCGGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS GCA 72 bp TCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATGCTaGTGCCATTGCTTCCTGGGGTTACAATGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: SSRVCYCVLLAC*CHCFLGLQCSQ
Trigger: CTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 72 bp CAGCGGCATAATCCCCGAGCTCATTCAGCTCCAGAATaGAGATCCACACCTCTATTCTCCGGGTCACTTCAT +
Preference number: 6 (lower is better)
Translates to: QRHNPRAHSAPE*RSTPLFSGSLH
Trigger: ATGAAGTGACCCGGAGAATAGAGGTGTGGATCTCCATTCTGGAGCTGAATGAGCTCGGGGATTATGCCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000056978.8
ENSMUST00000223856.2
ENSMUST00000224756.2
ENSMUST00000225591.2
CDS CAA 72 bp ACAAGGGTGCCATTGACACAGGACCTTGCATTTTCTTaGGGCGTGAGAGTGATGTCTCCATCCGCTGCGATG +
Preference number: 6 (lower is better)
Translates to: TRVPLTQDLAFS*GVRVMSPSAAM
Trigger: CATCGCAGCGGATGGAGACATCACTCTCACGCCCAAAGAAAATGCAAGGTCCTGTGTCAATGGCACCCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 72 bp TGCCACAGCTGGGTAGTACTGCAGACAAGGGTGCCATaGACACAGGACCTTGCATTTTCTTTGGGCGTGAGA +
Preference number: 6 (lower is better)
Translates to: CHSWVVLQTRVP*TQDLAFSLGVR
Trigger: TCTCACGCCCAAAGAAAATGCAAGGTCCTGTGTCAATGGCACCCTTGTCTGCAGTACTACCCAGCTGTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 72 bp ACCAAAGTGTTGGCTTTCACCAGCTGCTCTCGAAGCTaGGCCAAGCTCTGCCTAAAGAGTTCATCCCTCTCC +
Preference number: 6 (lower is better)
Translates to: TKVLAFTSCSRS*AKLCLKSSSLS
Trigger: GGAGAGGGATGAACTCTTTAGGCAGAGCTTGGCCAAGCTTCGAGAGCAGCTGGTGAAAGCCAACACTTTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 72 bp GAGGTCTTTCTGGGATACCTTTATGGTCTGTTTCGTTaGTTAGAGCCCTCCTCCTGGAGGGCTCCCCTACAG +
Preference number: 6 (lower is better)
Translates to: EVFLGYLYGLFR*LEPSSWRAPLQ
Trigger: CTGTAGGGGAGCCCTCCAGGAGGAGGGCTCTAACAAACGAAACAGACCATAAAGGTATCCCAGAAAGACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS CAA 72 bp CTGAACCACATTTTGAACTGGATCTCTCTCCCAGTGTaGGTGGACGAGCTTCGTCTGAAACCACAGGAGGGG +
Preference number: 6 (lower is better)
Translates to: LNHILNWISLPV*VDELRLKPQEG
Trigger: CCCCTCCTGTGGTTTCAGACGAAGCTCGTCCACCAACACTGGGAGAGAGATCCAGTTCAAAATGTGGTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238722.2
CDS CAA 90 bp GGACCATCTCTCTCTTACACAATTCAAGTCTTCTTCCTGTCTGAGTaGGAAGACGCCGCCGGTGTTGACGTCTTTCGCCTGGTGAAGCTC +
Preference number: 6 (lower is better)
Translates to: GPSLSYTIQVFFLSE*EDAAGVDVFRLVKL
Trigger: GAGCTTCACCAGGCGAAAGACGTCAACACCGGCGGCGTCTTCCAACTCAGACAGGAAGAAGACTTGAATTGTGTAAGAGAGAGATGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223856.2
CDS CAA 90 bp TTCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATGCTGCTGCCATaGCTTCCTGGGGTTACAATGCAGCCAGGGTTATGTGCCTGGGAT +
Preference number: 6 (lower is better)
Translates to: FFSGLLLCSTGMLLP*LPGVTMQPGLCAWD
Trigger: ATCCCAGGCACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CAA 90 bp TCCAGCTCGTTTTCCTCCTCTTCCGAGTCAATCTTCTTCTCGGGTTaGCTACTGTGTTCTACTGGCATGCTGCTGCCATTGCTTCCTGGG +
Preference number: 6 (lower is better)
Translates to: SSSFSSSSESIFFSG*LLCSTGMLLPLLPG
Trigger: CCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGACTCGGAAGAGGAGGAAAACGAGCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS TCA 72 bp TCTTCACGATCAGGTAGATCCTTTCATTCTGCGGTGTaGCCCGATTCAGGTGAAGAGAGTCGTGCACAGAGG +
Preference number: 6 (lower is better)
Translates to: SSRSGRSFHSAV*PDSGEESRAQR
Trigger: CCTCTGTGCACGACTCTCTTCACCTGAATCGGGTCACACCGCAGAATGAAAGGATCTACCTGATCGTGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp GTTTGCTACTGTGTTCTACTGGCATGCTGCTGCCATTaGTTCCTGGGGTTACAATGCAGCCAGGGTTATGTG +
Preference number: 6 (lower is better)
Translates to: VCYCVLLACCCH*FLGLQCSQGYV
Trigger: CACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS GCA 72 bp TCTTCTTCTCGGGTTTGCTACTGTGTTCTACTGGCATaGTGCTGCCATTGCTTCCTGGGGTTACAATGCAGC +
Preference number: 6 (lower is better)
Translates to: SSSRVCYCVLLA*CCHCFLGLQCS
Trigger: GCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 72 bp GTACTGCTTCTCCAGGACCTGAACCACATTTTGAACTaGATCTCTCTCCCAGTGTTGGTGGACGAGCTTCGT +
Preference number: 6 (lower is better)
Translates to: VLLLQDLNHILN*ISLPVLVDELR
Trigger: ACGAAGCTCGTCCACCAACACTGGGAGAGAGATCCAGTTCAAAATGTGGTTCAGGTCCTGGAGAAGCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238722.2
CDS CAA 72 bp CTCTCTTACACAATTCAAGTCTTCTTCCTGTCTGAGTaGGAAGACGCCGCCGGTGTTGACGTCTTTCGCCTG +
Preference number: 6 (lower is better)
Translates to: LSYTIQVFFLSE*EDAAGVDVFRL
Trigger: CAGGCGAAAGACGTCAACACCGGCGGCGTCTTCCAACTCAGACAGGAAGAAGACTTGAATTGTGTAAGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223856.2
CDS CAA 72 bp GGTTTGCTACTGTGTTCTACTGGCATGCTGCTGCCATaGCTTCCTGGGGTTACAATGCAGCCAGGGTTATGT +
Preference number: 6 (lower is better)
Translates to: GLLLCSTGMLLP*LPGVTMQPGLC
Trigger: ACATAACCCTGGCTGCATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CAA 90 bp CTGGAGGGCTCCCCTACAGAACAATCTGCCAAACCATCAAAGTCTTaGCCATCAGAAACACCCATGAACTCTGTGAAGGAATGGTCCTCC +
Preference number: 6 (lower is better)
Translates to: LEGSPTEQSAKPSKS*PSETPMNSVKEWSS
Trigger: GGAGGACCATTCCTTCACAGAGTTCATGGGTGTTTCTGATGGCAAAGACTTTGATGGTTTGGCAGATTGTTCTGTAGGGGAGCCCTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS TCA 72 bp GCCACTGTAGACTCACACTGGTCCCAGAACGTGTACTaGCAGAAGACGAAATTTGAGAGGCTTATGGGTAGC +
Preference number: 6 (lower is better)
Translates to: ATVDSHWSQNVY*QKTKFERLMGS
Trigger: GCTACCCATAAGCCTCTCAAATTTCGTCTTCTGTCAGTACACGTTCTGGGACCAGTGTGAGTCTACAGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 72 bp AGGCTGTGGCTGAAACCTCGTCATCACTGTGCTTTATaGTGGGCAGGTAGAAAAACTGACTGCCGTGTTCCT +
Preference number: 6 (lower is better)
Translates to: RLWLKPRHHCAL*WAGRKTDCRVP
Trigger: AGGAACACGGCAGTCAGTTTTTCTACCTGCCCATCATAAAGCACAGTGATGACGAGGTTTCAGCCACAGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS GCA 72 bp AGTACTGCAGACAAGGGTGCCATTGACACAGGACCTTaGATTTTCTTTGGGCGTGAGAGTGATGTCTCCATC +
Preference number: 6 (lower is better)
Translates to: STADKGAIDTGP*IFFGRESDVSI
Trigger: GATGGAGACATCACTCTCACGCCCAAAGAAAATGCAAGGTCCTGTGTCAATGGCACCCTTGTCTGCAGTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CCA 72 bp TCTGCTGCTGGGCTGATGGTCGCTATCATAGAGGTCTaGCTGTTCCCTCCTAAATTGTCCTTAAGAAGCCAA +
Preference number: 6 (lower is better)
Translates to: SAAGLMVAIIEV*LFPPKLSLRSQ
Trigger: TTGGCTTCTTAAGGACAATTTAGGAGGGAACAGCCAGACCTCTATGATAGCGACCATCAGCCCAGCAGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 72 bp TTAATTATCACCCTGCATGTCAGCTTTTTGACCCGGTaGATGACTTCGCCGCTGCTGTCGACCACTTCAAGA +
Preference number: 6 (lower is better)
Translates to: LIITLHVSFLTR*MTSPLLSTTSR
Trigger: TCTTGAAGTGGTCGACAGCAGCGGCGAAGTCATTCACCGGGTCAAAAAGCTGACATGCAGGGTGATAATTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS TCA 72 bp GGAGAGAACGCTTTAAAAGGGCTGACTGTTAAGGCATaGGGATTCTCTGATGGACAACCTTCCTTGCTCCTG +
Preference number: 6 (lower is better)
Translates to: GENALKGLTVKA*GFSDGQPSLLL
Trigger: CAGGAGCAAGGAAGGTTGTCCATCAGAGAATCCTCATGCCTTAACAGTCAGCCCTTTTAAAGCGTTCTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CCA 72 bp GTCAATCTTCTTCTCGGGTTTGCTACTGTGTTCTACTaGCATGCTGCTGCCATTGCTTCCTGGGGTTACAAT +
Preference number: 6 (lower is better)
Translates to: VNLLLGFATVFY*HAAAIASWGYN
Trigger: ATTGTAACCCCAGGAAGCAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CAA 72 bp TTTTCCTCCTCTTCCGAGTCAATCTTCTTCTCGGGTTaGCTACTGTGTTCTACTGGCATGCTGCTGCCATTG +
Preference number: 6 (lower is better)
Translates to: FSSSSESIFFSG*LLCSTGMLLPL
Trigger: CAATGGCAGCAGCATGCCAGTAGAACACAGTAGCAAACCCGAGAAGAAGATTGACTCGGAAGAGGAGGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223881.2
CDS CCA 72 bp CAAAATGTTTGTAGTGTGTTCTATCGTCACCTCTCCTaGGCAGAATTCTCTGGCTTGGTGGCCATCTTTGCT +
Preference number: 6 (lower is better)
Translates to: QNVCSVFYRHLS*AEFSGLVAIFA
Trigger: AGCAAAGATGGCCACCAAGCCAGAGAATTCTGCCCAGGAGAGGTGACGATAGAACACACTACAAACATTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2
CDS TCA 72 bp TTTACAGGCATGAGGGGTTTGAAGAACTTTGGTGGCTaGGGAGAGAACGCTTTAAAAGGGCTGACTGTTAAG +
Preference number: 6 (lower is better)
Translates to: FTGMRGLKNFGG*GENALKGLTVK
Trigger: CTTAACAGTCAGCCCTTTTAAAGCGTTCTCTCCTCAGCCACCAAAGTTCTTCAAACCCCTCATGCCTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
CDS CAA 72 bp AACCTCCCCCTGCTGGCTGATGATGGGTACTGCATATaGAAGCTTCACATCACAGAAGAGACATTCCAAAAA +
Preference number: 6 (lower is better)
Translates to: NLPLLADDGYCI*KLHITEETFQK
Trigger: TTTTTGGAATGTCTCTTCTGTGATGTGAAGCTTCAATATGCAGTACCCATCATCAGCCAGCAGGGGGAGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056978.8
ENSMUST00000225591.2
CDS CAA 72 bp TCCCCTACAGAACAATCTGCCAAACCATCAAAGTCTTaGCCATCAGAAACACCCATGAACTCTGTGAAGGAA +
Preference number: 6 (lower is better)
Translates to: SPTEQSAKPSKS*PSETPMNSVKE
Trigger: TTCCTTCACAGAGTTCATGGGTGTTTCTGATGGCAAAGACTTTGATGGTTTGGCAGATTGTTCTGTAGGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056978.8
ENSMUST00000223881.2
ENSMUST00000225836.2