RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KHNYN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047153

Ensembl transcript IDs: ENSMUST00000022831.5, ENSMUST00000228462.2

Found 279 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGGCAGTACGGTTCCCGCTGCAGGATGAAGTCCACCTTGTGGTCCTaGCCCCAAAACACTTCGAGCAGCTGGCGCCGCAGCCGCTCTGTC +
Preference number: 1 (lower is better)
Translates to: RQYGSRCRMKSTLWS*PQNTSSSWRRSRSV
Trigger: GACAGAGCGGCTGCGGCGCCAGCTGCTCGAAGTGTTTTGGGGTCAGGACCACAAGGTGGACTTCATCCTGCAGCGGGAACCGTACTGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp CATGTACCACCTCTCTACTTTAGGGGTTGTGCTGGGCCGTGGAGGTaGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGG +
Preference number: 1 (lower is better)
Translates to: HVPPLYFRGCAGPWR*RHQSHASALPPGPR
Trigger: CCTAGGCCCAGGCGGAAGGGCAGAAGCATGTGACTGATGGCGCCACCTCCACGGCCCAGCACAACCCCTAAAGTAGAGAGGTGGTACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp AGCCTCCATGTACCACCTCTCTACTTTAGGGGTTGTGCTGGGCCGTaGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGG +
Preference number: 1 (lower is better)
Translates to: SLHVPPLYFRGCAGP*RWRHQSHASALPPG
Trigger: CCCAGGCGGAAGGGCAGAAGCATGTGACTGATGGCGCCACCTCCACGGCCCAGCACAACCCCTAAAGTAGAGAGGTGGTACATGGAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 90 bp CCTGTGGAAACCCAAAGGGCAGAGGAGACTGAGGCTAAGGAGCCTTaGACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACA +
Preference number: 1 (lower is better)
Translates to: PVETQRAEETEAKEP*TTKGPAGQGPPEQT
Trigger: TGTTTGCTCTGGCGGTCCCTGGCCTGCTGGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTCAGTCTCCTCTGCCCTTTGGGTTTCCACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR TCA 90 bp GTTCTGGCTAGGGAGCCTGAACAGCCAGCCACAGGCAGACACGCCTaGGCCATGACCCAAGTACAGGTCCTCATGGGAGCCTTCTCTGTT +
Preference number: 1 (lower is better)
Translates to: VLAREPEQPATGRHA*AMTQVQVLMGAFSV
Trigger: AACAGAGAAGGCTCCCATGAGGACCTGTACTTGGGTCATGGCTCAGGCGTGTCTGCCTGTGGCTGGCTGTTCAGGCTCCCTAGCCAGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 90 bp GCTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTaGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTGCCTTGAAGGA +
Preference number: 1 (lower is better)
Translates to: AVGRAKSGPSADTGY*LPVLLPRAEGCLEG
Trigger: TCCTTCAAGGCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 90 bp CTGGAAGCCTGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTaGAACAGCCCACGTAGCGCTATGACCCCTCTGGGAGTCAGTATT +
Preference number: 1 (lower is better)
Translates to: LEACPPLPSGSQLAH*NSPRSAMTPLGVSI
Trigger: AATACTGACTCCCAGAGGGGTCATAGCGCTACGTGGGCTGTTGCAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 90 bp CAACTCTGTCAAGGTCACAGGCAGGCACAGCTGAGACTGGAAGCCTaGCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTGCAACAGC +
Preference number: 1 (lower is better)
Translates to: QLCQGHRQAQLRLEA*PPLPSGSQLAHCNS
Trigger: GCTGTTGCAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGCTGTGCCTGCCTGTGACCTTGACAGAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 90 bp GACACTGGCTACTGGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTaGCTTGAAGGATGTTGTAGCCTGAGCAGAGAAGGAGCCCCAAGG +
Preference number: 1 (lower is better)
Translates to: DTGYWLPVLLPRAEG*LEGCCSLSREGAPR
Trigger: CCTTGGGGCTCCTTCTCTGCTCAGGCTACAACATCCTTCAAGGCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTAGCCAGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 90 bp TCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATaGTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTA +
Preference number: 1 (lower is better)
Translates to: SPALWYERSLENVPS*CWKGKKWSLGGHWL
Trigger: TAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp GCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTaGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCT +
Preference number: 1 (lower is better)
Translates to: ALWYERSLENVPSCC*KGKKWSLGGHWLLA
Trigger: AGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR TCA 90 bp CTAGGGAGCCTGAACAGCCAGCCACAGGCAGACACGCCTGAGCCATaGCCCAAGTACAGGTCCTCATGGGAGCCTTCTCTGTTCTCATTT +
Preference number: 1 (lower is better)
Translates to: LGSLNSQPQADTPEP*PKYRSSWEPSLFSF
Trigger: AAATGAGAACAGAGAAGGCTCCCATGAGGACCTGTACTTGGGTCATGGCTCAGGCGTGTCTGCCTGTGGCTGGCTGTTCAGGCTCCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 90 bp CCCAGCCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTaGAGAACGTGCCATCATGCTGTTGGAAGGGCAAAAAGTGGTCCC +
Preference number: 1 (lower is better)
Translates to: PSLHTCPQHCGTSGL*RTCHHAVGRAKSGP
Trigger: GGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGGCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp GGCAGAAAGGCTCAGAAGTTGAGACTCAGCAGGGCCTCAGAAAGCTaGTTAATATCCCGGCAGTACGGTTCCCGCTGCAGGATGAAGTCC +
Preference number: 1 (lower is better)
Translates to: GRKAQKLRLSRASES*LISRQYGSRCRMKS
Trigger: GGACTTCATCCTGCAGCGGGAACCGTACTGCCGGGATATTAACCAGCTTTCTGAGGCCCTGCTGAGTCTCAACTTCTGAGCCTTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp CTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTaGATACACATTGGTGACCTGGCAGGAATTCTGAACTATGCCCTT +
Preference number: 1 (lower is better)
Translates to: LGLGGPIGSGRQFFP*IHIGDLAGILNYAL
Trigger: AAGGGCATAGTTCAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGAACCGATGGGGCCTCCTAGGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 90 bp CAGCCTTCCAGGGCACTCAGGGAAGGGAAGATAACCCCAGCCTTCTaGATACCCACCATCATGGCAAGAGAAAAGAGAAGACACCAATCC +
Preference number: 1 (lower is better)
Translates to: QPSRALREGKITPAF*IPTIMAREKRRHQS
Trigger: GGATTGGTGTCTTCTCTTTTCTCTTGCCATGATGGTGGGTATGCAGAAGGCTGGGGTTATCTTCCCTTCCCTGAGTGCCCTGGAAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp CAGAGAAGCTCAAGGGGGAAACAGTTATGGTTCTTTCTTCTCCTGTaGAAACCCAAAGGGCAGAGGAGACTGAGGCTAAGGAGCCTTGCA +
Preference number: 1 (lower is better)
Translates to: QRSSRGKQLWFFLLL*KPKGQRRLRLRSLA
Trigger: TGCAAGGCTCCTTAGCCTCAGTCTCCTCTGCCCTTTGGGTTTCCACAGGAGAAGAAAGAACCATAACTGTTTCCCCCTTGAGCTTCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR TCA 90 bp AAGGTTGCTGAAAAGGGATGCAGCCATTTACAGGGCATGTTCTACTaGAAGCCCAGCGTTAACATCGAGGGAGTGGACAGTGGACATCTC +
Preference number: 1 (lower is better)
Translates to: KVAEKGCSHLQGMFY*KPSVNIEGVDSGHL
Trigger: GAGATGTCCACTGTCCACTCCCTCGATGTTAACGCTGGGCTTTCAGTAGAACATGCCCTGTAAATGGCTGCATCCCTTTTCAGCAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 90 bp TGTTCAGGCATGGACACACAGAGAAGCTCAAGGGGGAAACAGTTATaGTTCTTTCTTCTCCTGTGGAAACCCAAAGGGCAGAGGAGACTG +
Preference number: 1 (lower is better)
Translates to: CSGMDTQRSSRGKQL*FFLLLWKPKGQRRL
Trigger: CAGTCTCCTCTGCCCTTTGGGTTTCCACAGGAGAAGAAAGAACCATAACTGTTTCCCCCTTGAGCTTCTCTGTGTGTCCATGCCTGAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 90 bp TACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTaGTTCCTCTGGCCAAAGCACCATCTTAGAGTGGGTCTAGGTCAT +
Preference number: 1 (lower is better)
Translates to: YPRQRVFPHSNSLLW*FLWPKHHLRVGLGH
Trigger: ATGACCTAGACCCACTCTAAGATGGTGCTTTGGCCAGAGGAAGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 90 bp CAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTTCCTCTaGCCAAAGCACCATCTTAGAGTGGGTCTAGGTCATGGTCTGAGC +
Preference number: 1 (lower is better)
Translates to: QRVFPHSNSLLWCFL*PKHHLRVGLGHGLS
Trigger: GCTCAGACCATGACCTAGACCCACTCTAAGATGGTGCTTTGGCCAGAGGAAGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 90 bp ACTAAGTCAGAGCTAGAAAGGCATCTAATTCAGGGACTTGCTACATaGACCCAGTGGCACCTGCCTTACCTTTTTATACCTCTACCCGAC +
Preference number: 1 (lower is better)
Translates to: TKSELERHLIQGLAT*TQWHLPYLFIPLPD
Trigger: GTCGGGTAGAGGTATAAAAAGGTAAGGCAGGTGCCACTGGGTTCATGTAGCAAGTCCCTGAATTAGATGCCTTTCTAGCTCTGACTTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 90 bp CCCCTAATCAACTTGTCCCCAACACCTAATCAATCTGGTGTGAAATaGAAATCACCCAAGGAAACAGACAAAGACACTGGGACCCAGAGA +
Preference number: 1 (lower is better)
Translates to: PLINLSPTPNQSGVK*KSPKETDKDTGTQR
Trigger: TCTCTGGGTCCCAGTGTCTTTGTCTGTTTCCTTGGGTGATTTTCATTTCACACCAGATTGATTAGGTGTTGGGGACAAGTTGATTAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 90 bp GGAGCCTTCTCTGTTCTCATTTCCCTCAACGGTTATCTTTATGCCTaGTGTGTAGACATAAGTAAAGGCCAAGCAACTCTGTCAAGGTCA +
Preference number: 1 (lower is better)
Translates to: GAFSVLISLNGYLYA*CVDISKGQATLSRS
Trigger: TGACCTTGACAGAGTTGCTTGGCCTTTACTTATGTCTACACATCAGGCATAAAGATAACCGTTGAGGGAAATGAGAACAGAGAAGGCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 90 bp TTAAGTAATGCAGCCATCCACCCTAACTTGCCTATTTTGATAACGTaGGTTTCGAAGGTTGCTGAAAAGGGATGCAGCCATTTACAGGGC +
Preference number: 1 (lower is better)
Translates to: LSNAAIHPNLPILIT*VSKVAEKGCSHLQG
Trigger: GCCCTGTAAATGGCTGCATCCCTTTTCAGCAACCTTCGAAACTCACGTTATCAAAATAGGCAAGTTAGGGTGGATGGCTGCATTACTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 90 bp ACTGGCTTCCGCTGTCTCTTTGGCTTATATTCCCCTAGAATTATCTaGAGAACTATTACCCTACATGGCTCTTCTCCTAAGCTGGGTTCT +
Preference number: 1 (lower is better)
Translates to: TGFRCLFGLYSPRII*RTITLHGSSPKLGS
Trigger: AGAACCCAGCTTAGGAGAAGAGCCATGTAGGGTAATAGTTCTTCAGATAATTCTAGGGGAATATAAGCCAAAGAGACAGCGGAAGCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 90 bp CACCTCTTCAACTTCTTCTGTGGCTTCTGTGTTACATTGTTGCCCTaGTTCTCATATATGCTGTGTAGACAATGTTCTACAGTTATGGCA +
Preference number: 1 (lower is better)
Translates to: HLFNFFCGFCVTLLP*FSYMLCRQCSTVMA
Trigger: TGCCATAACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAAGCCACAGAAGAAGTTGAAGAGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 90 bp ACCTTCACCTCTTCAACTTCTTCTGTGGCTTCTGTGTTACATTGTTaGCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGTTA +
Preference number: 1 (lower is better)
Translates to: TFTSSTSSVASVLHC*PGSHICCVDNVLQL
Trigger: TAACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAAGCCACAGAAGAAGTTGAAGAGGTGAAGGT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp CGGCGGACACTGGCTACTGGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTGCCGTTCCCGCTGCAGGATaGAGTCCACCTTGTGGTCCT +
Preference number: 2 (lower is better)
Translates to: RRTLATGYQYSFPELRAAVPAAG*SPPCGP
Trigger: AGGACCACAAGGTGGACTTCATCCTGCAGCGGGAAC...GGCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTAGCCAGTGTCCGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR GCA 90 bp CGGCGGACACTGGCTACTGGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTGCCCTGAGACTGGAAGCCTaGCCACCTCTGCCTTCTGGT +
Preference number: 2 (lower is better)
Translates to: RRTLATGYQYSFPELRAALRLEA*PPLPSG
Trigger: ACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAG...GGCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTAGCCAGTGTCCGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp CCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATCCAAGGAGTCCTGAATaGAGTGGCTCCAGCATCTAC +
Preference number: 2 (lower is better)
Translates to: PPGPRRPHRFRSPILPLDPRSPE*SGSSIY
Trigger: GTAGATGCTGGAGCCACTCCATTCAGGACTCCTTGG...ATCCAGGGGAAGAATTGGCGACCTGAACCGATGGGGCCTCCTAGGCCCAGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGTCCACCTTGTGGTCCTaGCCCCAAAACACTTCGAGC +
Preference number: 2 (lower is better)
Translates to: PNGKQQPGFLESLHARSWSTLWS*PQNTSS
Trigger: GCTCGAAGTGTTTTGGGGTCAGGACCACAAGGTGGA...CCACGACCTGGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCTTCCCATTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 90 bp AGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTaGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGC +
Preference number: 2 (lower is better)
Translates to: STVVRAVFGERAIML*EGQKVVPRRTLATG
Trigger: GCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp CCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCACAGGGACTTGCTACATaGACCCAGTGGCACCTGCCT +
Preference number: 2 (lower is better)
Translates to: PSYLSPALWYERSLENVPQGLAT*TQWHLP
Trigger: AGGCAGGTGCCACTGGGTTCATGTAGCAAGTCCCTG...TGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR GCA 90 bp CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGATAGGGCAGCAGCTATaGAGGGCAGAAAGGCTCAGA +
Preference number: 2 (lower is better)
Translates to: PNGKQQPGFLESLHARSWIGQQL*RAERLR
Trigger: TCTGAGCCTTTCTGCCCTGCATAGCTGCTGCCCTAT...CCACGACCTGGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCTTCCCATTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 90 bp GCCCAGCCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTaGGAGAACGTGCCATCATGCTGTTGGAAGGGCAAAAAGTGGTCC +
Preference number: 2 (lower is better)
Translates to: AQPSYLSPALWYERS*ENVPSCCWKGKKWS
Trigger: GGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGGCTGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp TGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTACCAGTGAAAGGCTCAGAAGTTaGGACTCAGCAGGGCCTCAG +
Preference number: 2 (lower is better)
Translates to: CWKGKKWSLGGHWLLATSERLRS*DSAGPQ
Trigger: CTGAGGCCCTGCTGAGTCTCAACTTCTGAGCCTTTC...ACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR GCA 90 bp GCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCCTGAGACTGGAAGCCTaGCCACCTCTGCCTTCTGGT +
Preference number: 2 (lower is better)
Translates to: ARGCFLSQLSLFVASSLPLRLEA*PPLPSG
Trigger: ACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAG...GGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp GGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGAACAACACTTCGAGCAGCTaGCGCCGCAGCCGCTCTGTC +
Preference number: 2 (lower is better)
Translates to: GRQFFPWIHIGDLAGILNNTSSS*RRSRSV
Trigger: GACAGAGCGGCTGCGGCGCCAGCTGCTCGAAGTGTT...GTTCAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATAGGGCAGCAGGCCAGTaGCCAGAGAAGAGCTGGTTT +
Preference number: 2 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDRAAGQ*PEKSWF
Trigger: AAACCAGCTCTTCTCTGGCCACTGGCCTGCTGCCCT...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp AGAGAAGACACCAATCCTAAGCTTAAAAGGCAGCTCTACCAGCCCCCAGTCCAGGGAACTCATCCAGGGTaGGGCCATTTCGTCCCAGTG +
Preference number: 2 (lower is better)
Translates to: REDTNPKLKRQLYQPPVQGTHPG*GHFVPV
Trigger: CACTGGGACGAAATGGCCCCACCCTGGATGAGTTCC...CTGGACTGGGGGCTGGTAGAGCTGCCTTTTAAGCTTAGGATTGGTGTCTTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 90 bp GACTCTAATAGGGCAGCAGCTATGCAGGGCAGAAAGGCTCAGAAGTaGAGACTCAGCAGGGCCTCAGAAAGCTGGTTAATATCCCGGCAG +
Preference number: 2 (lower is better)
Translates to: DSNRAAAMQGRKAQK*RLSRASESWLISRQ
Trigger: CTGCCGGGATATTAACCAGCTTTCTGAGGCCCTGCTGAGTCTCAACTTCTGAGCCTTTCTGCCCTGCATAGCTGCTGCCCTATTAGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp GGTCTCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAAAAGAACCCTGCTTCCTaGCTGGCTTCTTCAGGAACT +
Preference number: 2 (lower is better)
Translates to: GLSSSQEHSAFQGTQGREKNPAS*LASSGT
Trigger: AGTTCCTGAAGAAGCCAGTCAGGAAGCAGGGTTCTT...TTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGCTCTGGTGCTTCCTCTaGCCAAAGCACCATCTTAGA +
Preference number: 2 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLLWCFL*PKHHLR
Trigger: TCTAAGATGGTGCTTTGGCCAGAGGAAGCACCAGAG...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp GGTCTCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAACTCTGGTGCTTCCTCTaGCCAAAGCACCATCTTAGA +
Preference number: 2 (lower is better)
Translates to: GLSSSQEHSAFQGTQGRELWCFL*PKHHLR
Trigger: TCTAAGATGGTGCTTTGGCCAGAGGAAGCACCAGAG...TTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 90 bp CCGGCTCGTCATACTGCAGTAAGATGTCAGTGTCCCTCTATAAGCTaGGTCTCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTC +
Preference number: 2 (lower is better)
Translates to: PARHTAVRCQCPSIS*VSHLLRNTQPSRAL
Trigger: GAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGAGACCAAGCTTATAGAGGGACACTGACATCTTACTGCAGTATGACGAGCCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp TGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTACCAGTAGTTTCGAAGGTTGCTaGAAAGGGATGCAGCCATTT +
Preference number: 2 (lower is better)
Translates to: CWKGKKWSLGGHWLLATSSFEGC*KGMQPF
Trigger: AAATGGCTGCATCCCTTTTCAGCAACCTTCGAAACT...ACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 90 bp CAAGGGCCTGGGAATCAGGCAACATGGACGATTCCTGGGCTGAGCTaGCAGGGAGAGGACACTATTACTTTAGCTAGCAGAGGGAAAAAT +
Preference number: 2 (lower is better)
Translates to: QGPGNQATWTIPGLS*QGEDTITLASRGKN
Trigger: ATTTTTCCCTCTGCTAGCTAAAGTAATAGTGTCCTCTCCCTGCAAGCTCAGCCCAGGAATCGTCCATGTTGCCTGATTCCCAGGCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR GCA 90 bp GTCCAGACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCACAGTACGGTTCCCGCTaGAGGATGAAGTCCACCTTG +
Preference number: 2 (lower is better)
Translates to: VQTILFFSLVIPLINLSPQYGSR*RMKSTL
Trigger: CAAGGTGGACTTCATCCTGCAGCGGGAACCGTACTG...TGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGTCTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp TCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGACCCTGCTTCCTGACTaGCTTCTTCAGGAACTCATC +
Preference number: 2 (lower is better)
Translates to: SGRQFFPWIHIGDLAGILTLLPD*LLQELI
Trigger: GATGAGTTCCTGAAGAAGCCAGTCAGGAAGCAGGGT...CAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp ACCCAAGGAAACAGACAAAGACACTGGGACCCAGAGAGCCACATAGTTAACTCCGTCATTTTAAGGACCTaGCCTCAAACTACCCCAGGC +
Preference number: 2 (lower is better)
Translates to: TQGNRQRHWDPESHIVNSVILRT*PQTTPG
Trigger: GCCTGGGGTAGTTTGAGGTCAGGTCCTTAAAATGAC...GGAGTTAACTATGTGGCTCTCTGGGTCCCAGTGTCTTTGTCTGTTTCCTTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp TTAACATCGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGCCTTTAGAGGGCTGCTaGGTCTTAGAAGAACCCTGC +
Preference number: 2 (lower is better)
Translates to: LTSREWTVDISECEVLARPLEGC*VLEEPC
Trigger: GCAGGGTTCTTCTAAGACTCAGCAGCCCTCTAAAGG...CCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCGATGTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR GCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATGTCTTAGAAGAACCCTaGTTCCTGACTGGCTTCTTC +
Preference number: 2 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDVLEEP*FLTGFF
Trigger: GAAGAAGCCAGTCAGGAAGCAGGGTTCTTCTAAGAC...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATCACTTGAAATGCAACTaGGCAGCTGCCATTTATAGG +
Preference number: 2 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDHLKCN*AAAIYR
Trigger: CCTATAAATGGCAGCTGCTCAGTTGCATTTCAAGTG...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATTCAAATTCTCTTCTCTaGTGCTTCCTCTGGCCAAAG +
Preference number: 2 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDSNSLL*CFLWPK
Trigger: CTTTGGCCAGAGGAAGCACCAGAGAAGAGAATTTGA...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp TCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGTCAAATTCTCTTCTCTaGTGCTTCCTCTGGCCAAAG +
Preference number: 2 (lower is better)
Translates to: SGRQFFPWIHIGDLAGILSNSLL*CFLWPK
Trigger: CTTTGGCCAGAGGAAGCACCAGAGAAGAGAATTTGA...CAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp GTCCAGACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCAAAACCTCCTAAGAGCTaGCTTCGTGGTCCTTCCTCA +
Preference number: 2 (lower is better)
Translates to: VQTILFFSLVIPLINLSPKPPKS*LRGPSS
Trigger: TGAGGAAGGACCACGAAGCCAGCTCTTAGGAGGTTT...TGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGTCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp TCCATGACAGCTTACTACCAGCCAAGCCTGACTAAGGAGTATGATGAAGACAGCAGGGCCTCAGAAAGCTaGTTAATATCCCGGCAGTAC +
Preference number: 2 (lower is better)
Translates to: SMTAYYQPSLTKEYDEDSRASES*LISRQY
Trigger: GTACTGCCGGGATATTAACCAGCTTTCTGAGGCCCT...GCTGTCTTCATCATACTCCTTAGTCAGGCTTGGCTGGTAGTAAGCTGTCATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp ACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCAACACCTGTCATTTTAAGGACCTaGCCTCAAACTACCCCAGGC +
Preference number: 2 (lower is better)
Translates to: TILFFSLVIPLINLSPTPVILRT*PQTTPG
Trigger: GCCTGGGGTAGTTTGAGGTCAGGTCCTTAAAATGAC...AGGTGTTGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp GTCCAGACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCAAACAGACAAAGACACTaGGACCCAGAGAGCCACATA +
Preference number: 2 (lower is better)
Translates to: VQTILFFSLVIPLINLSPNRQRH*DPESHI
Trigger: TATGTGGCTCTCTGGGTCCCAGTGTCTTTGTCTGTT...TGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGTCTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CCA 90 bp AGTAAGATGTCAGTGTCCCTCTATAAGCTTGGTCTCTCATCTTCTCAGGAACACGCCATTTCGTCCCAGTaGGTCATCTGGGACCATGAA +
Preference number: 2 (lower is better)
Translates to: SKMSVSLYKLGLSSSQEHAISSQ*VIWDHE
Trigger: TTCATGGTCCCAGATGACCCACTGGGACGAAATGGC...GTGTTCCTGAGAAGATGAGAGACCAAGCTTATAGAGGGACACTGACATCTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp TTATGGTTCTTTCTTCTCCTGTGGAAACCCAAAGGGCAGAGGAGACTGAGGCTATGTCACTGCCAAACATaGCATCGTGAGTTTGGTGAA +
Preference number: 2 (lower is better)
Translates to: LWFFLLLWKPKGQRRLRLCHCQT*HREFGE
Trigger: TTCACCAAACTCACGATGTCATGTTTGGCAGTGACA...TAGCCTCAGTCTCCTCTGCCCTTTGGGTTTCCACAGGAGAAGAAAGAACCATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp ACAGCTTACTACCAGCCAAGCCTGACTAAGGAGTATGATGAAGACAGCCCAGGAACAGATACAGAGCAATaGCTTGTGGGAGTTAGAATG +
Preference number: 2 (lower is better)
Translates to: TAYYQPSLTKEYDEDSPGTDTEQ*LVGVRM
Trigger: CATTCTAACTCCCACAAGTCATTGCTCTGTATCTGT...TCCTGGGCTGTCTTCATCATACTCCTTAGTCAGGCTTGGCTGGTAGTAAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp TCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAAGATACAATCTGGTGTGAAATaGAAATCACCCAAGGAAACA +
Preference number: 2 (lower is better)
Translates to: SHLLRNTQPSRALREGKIQSGVK*KSPKET
Trigger: TGTTTCCTTGGGTGATTTTCATTTCACACCAGATTG...TATCTTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR TCA 90 bp GGGAGCCTTCTCTGTTCTCATTTCCCTCAACGGTTATCTTTATGCCTGATGTGTCACTTGAAATGCAACTaGGCAGCTGCCATTTATAGG +
Preference number: 2 (lower is better)
Translates to: GSLLCSHFPQRLSLCLMCHLKCN*AAAIYR
Trigger: CCTATAAATGGCAGCTGCTCAGTTGCATTTCAAGTG...ACACATCAGGCATAAAGATAACCGTTGAGGGAAATGAGAACAGAGAAGGCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CAA 90 bp AACCTTCACCTCTTCAACTTCTTCTGTGGCTTCTGTGTTACATTGTaGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGTT +
Preference number: 2 (lower is better)
Translates to: NLHLFNFFCGFCVTL*PWFSYMLCRQCSTV
Trigger: AACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAAGCCACAGAAGAAGTTGAAGAGGTGAAGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp GGCGCCGCAGCCGCTCTGTCTCCCGGGTCTTCCGAATaGCACCATTGCTCCTGTCCGCGTCCTTCCCCTGCT +
Preference number: 3 (lower is better)
Translates to: GAAAALSPGSSE*HHCSCPRPSPA
Trigger: AGCAGGGGAAGGACGCGGACAGGAGCAATGGTGGCATTCGGAAGACCCGGGAGACAGAGCGGCTGCGGCGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR TCA 72 bp GGTTCCCGCTGCAGGATGAAGTCCACCTTGTGGTCCTaGCCCCAAAACACTTCGAGCAGCTGGCGCCGCAGC +
Preference number: 3 (lower is better)
Translates to: GSRCRMKSTLWS*PQNTSSSWRRS
Trigger: GCTGCGGCGCCAGCTGCTCGAAGTGTTTTGGGGTCAGGACCACAAGGTGGACTTCATCCTGCAGCGGGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp ACCCAAAGGGCAGAGGAGACTGAGGCTAAGGAGCCTTaGACTACAAAGGGCCCAGCAGGCCAGGGACCGCCA +
Preference number: 3 (lower is better)
Translates to: TQRAEETEAKEP*TTKGPAGQGPP
Trigger: TGGCGGTCCCTGGCCTGCTGGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTCAGTCTCCTCTGCCCTTTGGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR TCA 72 bp GCCCCAAGGCAGAAGCTGGGGCCTGCTCCCGCACTCTaGGAAGTGGGTCAGGTGATGATCCCTGCACTTGAT +
Preference number: 3 (lower is better)
Translates to: APRQKLGPAPAL*EVGQVMIPALD
Trigger: ATCAAGTGCAGGGATCATCACCTGACCCACTTCTCAGAGTGCGGGAGCAGGCCCCAGCTTCTGCCTTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp GAGCAGAGAAGGAGCCCCAAGGCAGAAGCTGGGGCCTaGTCCCGCACTCTGAGAAGTGGGTCAGGTGATGAT +
Preference number: 3 (lower is better)
Translates to: EQRRSPKAEAGA*SRTLRSGSGDD
Trigger: ATCATCACCTGACCCACTTCTCAGAGTGCGGGAGCAGGCCCCAGCTTCTGCCTTGGGGCTCCTTCTCTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp AGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTaGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTGC +
Preference number: 3 (lower is better)
Translates to: RAKSGPSADTGY*LPVLLPRAEGC
Trigger: GCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp TGGGCCGCCCAGCCTTCATACCTGTCCCCAGCACTGTaGTACGAGCGGTCTTTGGAGAACGTGCCATCATGC +
Preference number: 3 (lower is better)
Translates to: WAAQPSYLSPAL*YERSLENVPSC
Trigger: GCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGGCTGGGCGGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp CCTCTCTACTTTAGGGGTTGTGCTGGGCCGTGGAGGTaGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCT +
Preference number: 3 (lower is better)
Translates to: PLYFRGCAGPWR*RHQSHASALPP
Trigger: AGGCGGAAGGGCAGAAGCATGTGACTGATGGCGCCACCTCCACGGCCCAGCACAACCCCTAAAGTAGAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp CAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTaGTACGTTCAGGTGAGGACCAAGGGCCTGGGAATC +
Preference number: 3 (lower is better)
Translates to: QPGFLESLHARS*YVQVRTKGLGI
Trigger: GATTCCCAGGCCCTTGGTCCTCACCTGAACGTACCACGACCTGGCGTGTAGACTCTCCAGGAAGCCTGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR TCA 72 bp CTGAACAGCCAGCCACAGGCAGACACGCCTGAGCCATaGCCCAAGTACAGGTCCTCATGGGAGCCTTCTCTG +
Preference number: 3 (lower is better)
Translates to: LNSQPQADTPEP*PKYRSSWEPSL
Trigger: CAGAGAAGGCTCCCATGAGGACCTGTACTTGGGTCATGGCTCAGGCGTGTCTGCCTGTGGCTGGCTGTTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 72 bp TGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTaGAACAGCCCACGTAGCGCTATGACCCCTCTGGGA +
Preference number: 3 (lower is better)
Translates to: CPPLPSGSQLAH*NSPRSAMTPLG
Trigger: TCCCAGAGGGGTCATAGCGCTACGTGGGCTGTTGCAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 72 bp CAAGGTCACAGGCAGGCACAGCTGAGACTGGAAGCCTaGCCACCTCTGCCTTCTGGTTCTCAACTAGCCCAC +
Preference number: 3 (lower is better)
Translates to: QGHRQAQLRLEA*PPLPSGSQLAH
Trigger: GTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGCTGTGCCTGCCTGTGACCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 72 bp GTACCACCTCTCTACTTTAGGGGTTGTGCTGGGCCGTaGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTT +
Preference number: 3 (lower is better)
Translates to: VPPLYFRGCAGP*RWRHQSHASAL
Trigger: AAGGGCAGAAGCATGTGACTGATGGCGCCACCTCCACGGCCCAGCACAACCCCTAAAGTAGAGAGGTGGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CAA 90 bp CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGCTCCAACTAAGGAACTaGGTAGTAAAGCCACAGGCG +
Preference number: 3 (lower is better)
Translates to: PNGKQQPGFLESLHARSWLQLRN*VVKPQA
Trigger: CGCCTGTGGCTTTACTACCAAGTTCCTTAGTTGGAG...CCACGACCTGGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCTTCCCATTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp CTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATaGTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGA +
Preference number: 3 (lower is better)
Translates to: LWYERSLENVPS*CWKGKKWSLGG
Trigger: TCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp AAAAGACCCACAGCCCTCAACGCTGCCCACTCCACGTaGACACGGGAAGACCATAAGGGAGAAGGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: KRPTALNAAHST*TREDHKGEGKA
Trigger: TGCTTTCCCTTCTCCCTTATGGTCTTCCCGTGTGCACGTGGAGTGGGCAGCGTTGAGGGCTGTGGGTCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp GGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTaGCTAGGGAGCCTGAACAGCCAGCCACAGGCAGAC +
Preference number: 3 (lower is better)
Translates to: GSGQWTSLNVKF*LGSLNSQPQAD
Trigger: GTCTGCCTGTGGCTGGCTGTTCAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 72 bp GCTCAGAAGTTGAGACTCAGCAGGGCCTCAGAAAGCTaGTTAATATCCCGGCAGTACGGTTCCCGCTGCAGG +
Preference number: 3 (lower is better)
Translates to: AQKLRLSRASES*LISRQYGSRCR
Trigger: CCTGCAGCGGGAACCGTACTGCCGGGATATTAACCAGCTTTCTGAGGCCCTGCTGAGTCTCAACTTCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp TACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTaGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGG +
Preference number: 3 (lower is better)
Translates to: YERSLENVPSCC*KGKKWSLGGHW
Trigger: CCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp GGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTaGATACACATTGGTGACCTGGCAGGAATTCTGAAC +
Preference number: 3 (lower is better)
Translates to: GGPIGSGRQFFP*IHIGDLAGILN
Trigger: GTTCAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGAACCGATGGGGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp CAGCCTATCCTACCACTCAGAGGAGCAGCCAGAGGGTaGTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCC +
Preference number: 3 (lower is better)
Translates to: QPILPLRGAARG*FLSQLSLFVAS
Trigger: GGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGCTGCTCCTCTGAGTGGTAGGATAGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 72 bp TACTGGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTaGCTTGAAGGATGTTGTAGCCTGAGCAGAGAAGGA +
Preference number: 3 (lower is better)
Translates to: YWLPVLLPRAEG*LEGCCSLSREG
Trigger: TCCTTCTCTGCTCAGGCTACAACATCCTTCAAGGCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp CATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTaGAGAACGTGCCATCATGCTGTTGGAAGGGCAAAA +
Preference number: 3 (lower is better)
Translates to: HTCPQHCGTSGL*RTCHHAVGRAK
Trigger: TTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp CCAAGGGCCTGGGAATCAGGCAACATGGACGATTCCTaGGCTGAGCTTGCAGGGAGAGGACACTATTACTTT +
Preference number: 3 (lower is better)
Translates to: PRAWESGNMDDS*AELAGRGHYYF
Trigger: AAAGTAATAGTGTCCTCTCCCTGCAAGCTCAGCCCAGGAATCGTCCATGTTGCCTGATTCCCAGGCCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp TCAGAGGATGCCAGCAAAAGTGGGAAAAGGGCCCTGTaGGCTAGCCTTCAGCATTTACCAAACAGCCATGAG +
Preference number: 3 (lower is better)
Translates to: SEDASKSGKRAL*ASLQHLPNSHE
Trigger: CTCATGGCTGTTTGGTAAATGCTGAAGGCTAGCCCACAGGGCCCTTTTCCCACTTTTGCTGGCATCCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CAA 90 bp TCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGCGTGAGTTTCGAAGGTaGCTGAAAAGGGATGCAGCC +
Preference number: 3 (lower is better)
Translates to: SGRQFFPWIHIGDLAGILREFRR*LKRDAA
Trigger: GGCTGCATCCCTTTTCAGCAACCTTCGAAACTCACG...CAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CAA 90 bp TTAACATCGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGTTCCGAATGCCACCATaGCTCCTGTCCGCGTCCTTC +
Preference number: 3 (lower is better)
Translates to: LTSREWTVDISECEVLARFRMPP*LLSASF
Trigger: GAAGGACGCGGACAGGAGCAATGGTGGCATTCGGAA...CCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCGATGTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CAA 90 bp ACCCAAGGAAACAGACAAAGACACTGGGACCCAGAGAGCCACATAGTTAACTCCCGTGAGTTTCGAAGGTaGCTGAAAAGGGATGCAGCC +
Preference number: 3 (lower is better)
Translates to: TQGNRQRHWDPESHIVNSREFRR*LKRDAA
Trigger: GGCTGCATCCCTTTTCAGCAACCTTCGAAACTCACG...GGAGTTAACTATGTGGCTCTCTGGGTCCCAGTGTCTTTGTCTGTTTCCTTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp TCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTaGACTATGCCCTTGAAGCAAACCACGTCCAAGGAG +
Preference number: 3 (lower is better)
Translates to: SPGYTLVTWQEF*TMPLKQTTSKE
Trigger: CTCCTTGGACGTGGTTTGCTTCAAGGGCATAGTTCAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR GCA 72 bp AGGGCACTCAGGGAAGGGAAGATAACCCCAGCCTTCTaGATACCCACCATCATGGCAAGAGAAAAGAGAAGA +
Preference number: 3 (lower is better)
Translates to: RALREGKITPAF*IPTIMAREKRR
Trigger: TCTTCTCTTTTCTCTTGCCATGATGGTGGGTATGCAGAAGGCTGGGGTTATCTTCCCTTCCCTGAGTGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR-3UTR CAA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATTGGTCCTTCCTCAGGTaGAGTCATTTTAAGGACCTG +
Preference number: 3 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDWSFLR*SHFKDL
Trigger: CAGGTCCTTAAAATGACTCAACCTGAGGAAGGACCA...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp GAAAAGGGATGCAGCCATTTACAGGGCATGTTCTACTaGAAGCCCAGCGTTAACATCGAGGGAGTGGACAGT +
Preference number: 3 (lower is better)
Translates to: EKGCSHLQGMFY*KPSVNIEGVDS
Trigger: ACTGTCCACTCCCTCGATGTTAACGCTGGGCTTTCAGTAGAACATGCCCTGTAAATGGCTGCATCCCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR-3UTR CAA 90 bp GGGAGCCTTCTCTGTTCTCATTTCCCTCAACGGTTATCTTTATGCCTGATGTGTTGGTCCTTCCTCAGGTaGAGTCATTTTAAGGACCTG +
Preference number: 3 (lower is better)
Translates to: GSLLCSHFPQRLSLCLMCWSFLR*SHFKDL
Trigger: CAGGTCCTTAAAATGACTCAACCTGAGGAAGGACCA...ACACATCAGGCATAAAGATAACCGTTGAGGGAAATGAGAACAGAGAAGGCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp GCAGCCATCCACCCTAACTTGCCTATTTTGATAACGTaGGTTTCGAAGGTTGCTGAAAAGGGATGCAGCCAT +
Preference number: 3 (lower is better)
Translates to: AAIHPNLPILIT*VSKVAEKGCSH
Trigger: ATGGCTGCATCCCTTTTCAGCAACCTTCGAAACTCACGTTATCAAAATAGGCAAGTTAGGGTGGATGGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp ACTCTGAGAAGTGGGTCAGGTGATGATCCCTGCACTTaGTTGAGATCAGAATCCATCAGGGTCTTAGACTCT +
Preference number: 3 (lower is better)
Translates to: TLRSGSGDDPCT*LRSESIRVLDS
Trigger: AGAGTCTAAGACCCTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCACTTCTCAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp AGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTaGTGCTTCCTCTGGCCAAAGCACCATCTTAGAGTG +
Preference number: 3 (lower is better)
Translates to: RQRVFPHSNSLL*CFLWPKHHLRV
Trigger: CACTCTAAGATGGTGCTTTGGCCAGAGGAAGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp GAGCTAGAAAGGCATCTAATTCAGGGACTTGCTACATaGACCCAGTGGCACCTGCCTTACCTTTTTATACCT +
Preference number: 3 (lower is better)
Translates to: ELERHLIQGLAT*TQWHLPYLFIP
Trigger: AGGTATAAAAAGGTAAGGCAGGTGCCACTGGGTTCATGTAGCAAGTCCCTGAATTAGATGCCTTTCTAGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CCA 72 bp GAGTTAGAATGTAAACAGCTTGTCATGACAGGTCAATaGAGTCCGTCTGTAACCAATCAGGTATCTCGATCC +
Preference number: 3 (lower is better)
Translates to: ELECKQLVMTGQ*SPSVTNQVSRS
Trigger: GGATCGAGATACCTGATTGGTTACAGACGGACTCCATTGACCTGTCATGACAAGCTGTTTACATTCTAACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp CTTGCCTATTTTGATAACGTGAGTTTCGAAGGTTGCTaGAAAGGGATGCAGCCATTTACAGGGCATGTTCTA +
Preference number: 3 (lower is better)
Translates to: LAYFDNVSFEGC*KGMQPFTGHVL
Trigger: TAGAACATGCCCTGTAAATGGCTGCATCCCTTTTCAGCAACCTTCGAAACTCACGTTATCAAAATAGGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 72 bp TTCCGCTTCCCATACACAGAAGGTAGCAGTGTGTCTTaGCGAAAGAAACCTGTCTTCCATAAAGGAAATATT +
Preference number: 3 (lower is better)
Translates to: FRFPYTEGSSVS*RKKPVFHKGNI
Trigger: AATATTTCCTTTATGGAAGACAGGTTTCTTTCGGCAAGACACACTGCTACCTTCTGTGTATGGGAAGCGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR TCA 72 bp CGCTGTCTCTTTGGCTTATATTCCCCTAGAATTATCTaGAGAACTATTACCCTACATGGCTCTTCTCCTAAG +
Preference number: 3 (lower is better)
Translates to: RCLFGLYSPRII*RTITLHGSSPK
Trigger: CTTAGGAGAAGAGCCATGTAGGGTAATAGTTCTTCAGATAATTCTAGGGGAATATAAGCCAAAGAGACAGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp CAGACAGAGTTCAAACAGATACAGAGCAATGACTTGTaGGAGTTAGAATGTAAACAGCTTGTCATGACAGGT +
Preference number: 3 (lower is better)
Translates to: QTEFKQIQSNDL*ELECKQLVMTG
Trigger: ACCTGTCATGACAAGCTGTTTACATTCTAACTCCCACAAGTCATTGCTCTGTATCTGTTTGAACTCTGTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR GCA 72 bp TCTTCAACTTCTTCTGTGGCTTCTGTGTTACATTGTTaGCCTGGTTCTCATATATGCTGTGTAGACAATGTT +
Preference number: 3 (lower is better)
Translates to: SSTSSVASVLHC*PGSHICCVDNV
Trigger: AACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAAGCCACAGAAGAAGTTGAAGA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CCA 72 bp AACTTCTTCTGTGGCTTCTGTGTTACATTGTTGCCCTaGTTCTCATATATGCTGTGTAGACAATGTTCTACA +
Preference number: 3 (lower is better)
Translates to: NFFCGFCVTLLP*FSYMLCRQCST
Trigger: TGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAAGCCACAGAAGAAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCTGTCCGCGTCCTTCCCCTGCTGCTGATTAGCCTGCTCTGTGGAGCCTTTAGAAGGCACTCTCGGAGGTaGGGCGCTCCCATTGTGGAG +
Preference number: 4 (lower is better)
Translates to: PVRVLPLLLISLLCGAFRRHSRR*GAPIVE
Trigger: CTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCT...TCTAAAGGCTCCACAGAGCAGGCTAATCAGCAGCAGGGGAAGGACGCGGACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp CCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATGCATCCTCCCTAGTCTaGAGCAGGGCAGAGAAGTCT +
Preference number: 4 (lower is better)
Translates to: PPGPRRPHRFRSPILPLDASSLV*SRAEKS
Trigger: AGACTTCTCTGCCCTGCTGCAGACTAGGGAGGATGC...ATCCAGGGGAAGAATTGGCGACCTGAACCGATGGGGCCTCCTAGGCCCAGGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp GCTGAGACTGGAAGCCTGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTGAACACTTCGAGCAGCTaGCGCCGCAGCCGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: AETGSLPTSAFWFSTSPLNTSSS*RRSRSV
Trigger: GACAGAGCGGCTGCGGCGCCAGCTGCTCGAAGTGTT...CAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR GCA 90 bp GCTGAGACTGGAAGCCTGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTGCCTGGAAACGCTGCGTaGCAGTCACCAAGTTGCCCC +
Preference number: 4 (lower is better)
Translates to: AETGSLPTSAFWFSTSPLPGNAA*QSPSCP
Trigger: GGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGG...CAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp GCTGAGACTGGAAGCCTGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTGGGACAAGACTGTAGCTaGAGGTCCCAGCTCAGCCGT +
Preference number: 4 (lower is better)
Translates to: AETGSLPTSAFWFSTSPLGQDCS*RSQLSR
Trigger: ACGGCTGAGCTGGGACCTTCAGCTACAGTCTTGTCC...CAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp GATCTGTCTCCAGTGAGCTCTGGTGTCACCCTGACACCTGTTCAGAGGATGCCACAGCTCCTTCCGCCCTaGACCCATGTCCCTGACAGC +
Preference number: 4 (lower is better)
Translates to: DLSPVSSGVTLTPVQRMPQLLPP*THVPDS
Trigger: GCTGTCAGGGACATGGGTTCAGGGCGGAAGGAGCTG...TGGCATCCTCTGAACAGGTGTCAGGGTGACACCAGAGCTCACTGGAGACAGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATCCTTGGAATCTTTACTaGAGCGCCACTGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: PPGPRRPHRFRSPILPLDPWNLY*SATEAQ
Trigger: TTGTGCCTCAGTGGCGCTTCAGTAAAGATTCCAAGG...ATCCAGGGGAAGAATTGGCGACCTGAACCGATGGGGCCTCCTAGGCCCAGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GATCTGTCTCCAGTGAGCTCTGGTGTCACCCTGACACCTGTTCAGAGGATGCCACGAGCTCCAGCCTGCTaGTTGTCTCCCCTGTCTCCC +
Preference number: 4 (lower is better)
Translates to: DLSPVSSGVTLTPVQRMPRAPAC*LSPLSP
Trigger: GGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCG...TGGCATCCTCTGAACAGGTGTCAGGGTGACACCAGAGCTCACTGGAGACAGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp AGTAAGGAGTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCCCATTGTGGAGCCGCTaGAGGAGAGAGGCTCCCCGG +
Preference number: 4 (lower is better)
Translates to: SKECATLQTVHSPAQTEFPLWSR*RREAPR
Trigger: CCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGG...GAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACACTCCTTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp GGAGCAGCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCGAGGCGCTCCCATTGTaGAGCCGCTGGAGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: GAARGCFLSQLSLFVASSEALPL*SRWRRE
Trigger: CTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTC...GCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGCTGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCACTGACTCCCTGGAACTaGGGACTCAACAGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PSYLSPALWYERSLENVPLTPWN*GLNRPE
Trigger: CTCAGGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAG...TGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATCAGCCAGCTTCACCATaGACCTGTCATCATAAGAAG +
Preference number: 4 (lower is better)
Translates to: PPGPRRPHRFRSPILPLDQPASP*TCHHKK
Trigger: CTTCTTATGATGACAGGTTCATGGTGAAGCTGGCTG...ATCCAGGGGAAGAATTGGCGACCTGAACCGATGGGGCCTCCTAGGCCCAGGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGCCAGGTGGGCAGATGTaGTCCAGGCCAGGCAGTCAA +
Preference number: 4 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLPGGQM*SRPGSQ
Trigger: TTGACTGCCTGGCCTGGAGCACATCTGCCCACCTGG...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GCTGAGACTGGAAGCCTGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTGGCTTCCTGGAAACGCTaGGTGCCAGTCACCAAGTTG +
Preference number: 4 (lower is better)
Translates to: AETGSLPTSAFWFSTSPLASWKR*VPVTKL
Trigger: CAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGC...CAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGCTGAACCCATGTCCCTaGCAGCATCCTGTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: PNGKQQPGFLESLHARSWLNPCP*QHPVSF
Trigger: AAAGGAAACAGGATGCTGTCAGGGACATGGGTTCAG...CCACGACCTGGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCTTCCCATTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp AGTAAGGAGTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCATTGGAGCTGCCCTCTaGCAGGGCACATGCGCACCT +
Preference number: 4 (lower is better)
Translates to: SKECATLQTVHSPAQTEFIGAAL*QGTCAP
Trigger: AGGTGCGCATGTGCCCTGTCAGAGGGCAGCTCCAAT...GAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACACTCCTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp GCTGAGACTGGAAGCCTGCCCACCTCTGCCTTCTGGTTCTCAACTAGCCCACTGCCATCAATGACAATGTaGCGGAGATCTGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: AETGSLPTSAFWFSTSPLPSMTM*RRSGWP
Trigger: TGGCCAGCCAGATCTCCGTCACATTGTCATTGATGG...CAGTGGGCTAGTTGAGAACCAGAAGGCAGAGGTGGGCAGGCTTCCAGTCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGTCCTCTTGCCATCCATaGCTCGTGAGGGTGTCAGGG +
Preference number: 4 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLSSCHP*LVRVSG
Trigger: CCCTGACACCCTCACGAGTCATGGATGGCAAGAGGA...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GGTCTCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAAGGGCTCCCAGAAAGATaGAGTGCAGTCTGGGTGGGT +
Preference number: 4 (lower is better)
Translates to: GLSSSQEHSAFQGTQGREGLPER*SAVWVG
Trigger: ACCCACCCAGACTGCACTGCATCTTTCTGGGAGCCC...TTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GATCTGTCTCCAGTGAGCTCTGGTGTCACCCTGACACCTGTTCAGAGGATGCCATCACGAGATGGACCCTaGCCTCTAGATGCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: DLSPVSSGVTLTPVQRMPSRDGP*PLDASC
Trigger: GCAGGAGGCATCTAGAGGGCAGGGTCCATCTCGTGA...TGGCATCCTCTGAACAGGTGTCAGGGTGACACCAGAGCTCACTGGAGACAGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp GGAGCAGCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCTGCAGACGTTCTCCTTaGGGCCCTCAAGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: GAARGCFLSQLSLFVASSCRRSP*GPQAAT
Trigger: GGTTGCAGCTTGAGGGCCCCAAGGAGAACGTCTGCA...GCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGCTGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CAA 72 bp GTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTaGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTG +
Preference number: 4 (lower is better)
Translates to: VRAVFGERAIML*EGQKVVPRRTL
Trigger: CAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTTCCTCTGGCCAGCTCCTTCCGCCCTaGACCCATGTCCCTGACAGC +
Preference number: 4 (lower is better)
Translates to: PGKEYSHTQILFSGASSGQLLPP*THVPDS
Trigger: GCTGTCAGGGACATGGGTTCAGGGCGGAAGGAGCTG...GCCAGAGGAAGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp GCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTCCACCTTGTGGTCCTaGCCCCAAAACACTTCGAGC +
Preference number: 4 (lower is better)
Translates to: ARGCFLSQLSLFVASSLPSTLWS*PQNTSS
Trigger: GCTCGAAGTGTTTTGGGGTCAGGACCACAAGGTGGA...GGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR GCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGCAGTACGGTTCCCGCTaGAGGATGAAGTCCACCTTG +
Preference number: 4 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLQYGSR*RMKSTL
Trigger: CAAGGTGGACTTCATCCTGCAGCGGGAACCGTACTG...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR CCA 90 bp GGTCTCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAATTGTCCTCTTACTGCTaGCGACTTTCCCGACCCTGC +
Preference number: 4 (lower is better)
Translates to: GLSSSQEHSAFQGTQGRELSSYC*RLSRPC
Trigger: GCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAA...TTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGAATGTGACGGAGATCTaGCTGGCCAGGCACATTGGC +
Preference number: 4 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLNVTEI*LARHIG
Trigger: GCCAATGTGCCTGGCCAGCCAGATCTCCGTCACATT...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp AGTAAGGAGTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCGGAGTCCGTGCACCATaGCCACGTTGCTGCCATCAA +
Preference number: 4 (lower is better)
Translates to: SKECATLQTVHSPAQTEFGVRAP*PRCCHQ
Trigger: TTGATGGCAGCAACGTGGCCATGGTGCACGGACTCC...GAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACACTCCTTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGACGGTTATGTCACGGTaGCCACGGTCCCAGAAGTAC +
Preference number: 4 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLTVMSR*PRSQKY
Trigger: GTACTTCTGGGACCGTGGCCACCGTGACATAACCGT...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp AGTAAGGAGTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCGGAACTCATCCAGGGTaGGGCCATTTCGTCCCAGTG +
Preference number: 4 (lower is better)
Translates to: SKECATLQTVHSPAQTEFGTHPG*GHFVPV
Trigger: CACTGGGACGAAATGGCCCCACCCTGGATGAGTTCC...GAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACACTCCTTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR TCA 90 bp TTAACATCGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGAGGCACTCTCGGAGGTaGGGCGCTCCCATTGTGGAG +
Preference number: 4 (lower is better)
Translates to: LTSREWTVDISECEVLARRHSRR*GAPIVE
Trigger: CTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCT...CCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCGATGTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATTACTGAAGCGCCACTaGGGCACAAAGACGGTTATG +
Preference number: 4 (lower is better)
Translates to: PSYLSPALWYERSLENVPLLKRH*GTKTVM
Trigger: CATAACCGTCTTTGTGCCTCAGTGGCGCTTCAGTAA...TGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATCTTTCCCTTCAAGGGTaGCACCTCCTCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDLSLQG*HLLCSS
Trigger: GGAGGAGCAGAGGAGGTGGCACCCTTGAAGGGAAAG...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAAGATACTTTCCCTTCAAGGGTaGCACCTCCTCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SHLLRNTQPSRALREGKILSLQG*HLLCSS
Trigger: GGAGGAGCAGAGGAGGTGGCACCCTTGAAGGGAAAG...TATCTTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TTAACATCGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGCGAGCTCCAGCCTGCTaGTTGTCTCCCCTGTCTCCC +
Preference number: 4 (lower is better)
Translates to: LTSREWTVDISECEVLARRAPAC*LSPLSP
Trigger: GGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCG...CCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCGATGTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAATGCCAGTCACCAAGTTaGCCCCACGAGTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKECQSPS*PHECLA
Trigger: AGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCA...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp GCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCAGATGCAGTGCAGTCTaGGTGGGTAGTGGATCTCAC +
Preference number: 4 (lower is better)
Translates to: ARGCFLSQLSLFVASSLPRCSAV*VGSGSH
Trigger: GTGAGATCCACTACCCACCCAGACTGCACTGCATCT...GGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp TGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTACCAGTGCCAGATCCCGGAACTaGTCATTGGAGACAATGATC +
Preference number: 4 (lower is better)
Translates to: CWKGKKWSLGGHWLLATSARSRN*SLETMI
Trigger: GATCATTGTCTCCAATGACCAGTTCCGGGATCTGGC...ACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 72 bp TCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTaGGTAGTAAAGCCACAGGCGCAGTCTCCTGGAACA +
Preference number: 4 (lower is better)
Translates to: SPPAYPILQLRN*VVKPQAQSPGT
Trigger: TGTTCCAGGAGACTGCGCCTGTGGCTTTACTACCAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CAA 72 bp TCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTaGGAGAACGTGCCATCATGCTGTTGGAAGGGCAAA +
Preference number: 4 (lower is better)
Translates to: SYLSPALWYERS*ENVPSCCWKGK
Trigger: TTTGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp ACAGCTTACTACCAGCCAAGCCTGACTAAGGAGTATGATGAAGACAGCCCAGGAGCCATCCATGACTCGTaGGGGTGTCAGGGAAAGCAG +
Preference number: 4 (lower is better)
Translates to: TAYYQPSLTKEYDEDSPGAIHDS*GCQGKQ
Trigger: CTGCTTTCCCTGACACCCTCACGAGTCATGGATGGC...TCCTGGGCTGTCTTCATCATACTCCTTAGTCAGGCTTGGCTGGTAGTAAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAATCCTCTTGCCATCCATaGCTCGTGAGGGTGTCAGGG +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKESSCHP*LVRVSG
Trigger: CCCTGACACCCTCACGAGTCATGGATGGCAAGAGGA...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GGTCTCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAATCTGTAGTTCTGGGCTaGAGAGCCCCTTCAGGTATT +
Preference number: 4 (lower is better)
Translates to: GLSSSQEHSAFQGTQGRESVVLG*RAPSGI
Trigger: AATACCTGAAGGGGCTCTGCAGCCCAGAACTACAGA...TTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAAGGGCTCCCAGAAAGATaGAGTGCAGTCTGGGTGGGT +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKEGLPER*SAVWVG
Trigger: ACCCACCCAGACTGCACTGCATCTTTCTGGGAGCCC...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACGACTTTCCCGACCCTaGCACTCTGGTGCCTACGAA +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKERLSRP*HSGAYE
Trigger: TTCGTAGGCACCAGAGTGGCAGGGTCGGGAAAGTCG...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TTAACATCGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGCCTGGAAACGCTGCGTaGCAGTCACCAAGTTGCCCC +
Preference number: 4 (lower is better)
Translates to: LTSREWTVDISECEVLARPGNAA*QSPSCP
Trigger: GGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGG...CCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCGATGTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp CCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTTCCTCTGGCTGCAGACGTTCTCCTTaGGGCCCTCAAGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: PGKEYSHTQILFSGASSGCRRSP*GPQAAT
Trigger: GGTTGCAGCTTGAGGGCCCCAAGGAGAACGTCTGCA...GCCAGAGGAAGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp TCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGAATGTGACGGAGATCTaGCTGGCCAGGCACATTGGC +
Preference number: 4 (lower is better)
Translates to: SGRQFFPWIHIGDLAGILNVTEI*LARHIG
Trigger: GCCAATGTGCCTGGCCAGCCAGATCTCCGTCACATT...CAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
3UTR CAA 72 bp CAGCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTaGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGG +
Preference number: 4 (lower is better)
Translates to: QPEGAFFLSLAF*SPPAYPILQLR
Trigger: CCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CAA 72 bp AGGGCAGCAGCTATGCAGGGCAGAAAGGCTCAGAAGTaGAGACTCAGCAGGGCCTCAGAAAGCTGGTTAATA +
Preference number: 4 (lower is better)
Translates to: RAAAMQGRKAQK*RLSRASESWLI
Trigger: TATTAACCAGCTTTCTGAGGCCCTGCTGAGTCTCAACTTCTGAGCCTTTCTGCCCTGCATAGCTGCTGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGTGCCTACGAATTCCCTaGCTTCATTCAAGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: SGRQFFPWIHIGDLAGILCLRIP*LHSREP
Trigger: GGGCTCCCTTGAATGAAGGCAGGGAATTCGTAGGCA...CAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp CAAACTACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTTGCCAGTCACCAAGTTaGCCCCACGAGTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: QTTPGKEYSHTQILFSGACQSPS*PHECLA
Trigger: AGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCA...AGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGGTCTTAGAAGAACCCTaGTTCCTGACTGGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLVLEEP*FLTGFF
Trigger: GAAGAAGCCAGTCAGGAAGCAGGGTTCTTCTAAGAC...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR CCA 90 bp GCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCGATATGAGGATTCTCTaGGCAGTCTTTGGAGAGGAC +
Preference number: 4 (lower is better)
Translates to: ARGCFLSQLSLFVASSLPDMRIL*AVFGED
Trigger: GTCCTCTCCAAAGACTGCCCAGAGAATCCTCATATC...GGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp TCTAAGAAGTTGACTAGCCCTAAATTACTCCTGGGGAAAGTGAAAGTCACAGAGCCATTGTGGAGCCGCTaGAGGAGAGAGGCTCCCCGG +
Preference number: 4 (lower is better)
Translates to: SKKLTSPKLLLGKVKVTEPLWSR*RREAPR
Trigger: CCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGG...CTCTGTGACTTTCACTTTCCCCAGGAGTAATTTAGGGCTAGTCAACTTCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp AGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGACGGTTATGTCACGGTaGCCACGGTCCCAGAAGTAC +
Preference number: 4 (lower is better)
Translates to: SLAFLSPPAYPILQLRNLTVMSR*PRSQKY
Trigger: GTACTTCTGGGACCGTGGCCACCGTGACATAACCGT...CAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGGTAGTAAAGGGACAAGACTGTAGCTaGAGGTCCCAGCTCAGCCGT +
Preference number: 4 (lower is better)
Translates to: FLSPPAYPILQLRNLVVKGQDCS*RSQLSR
Trigger: ACGGCTGAGCTGGGACCTTCAGCTACAGTCTTGTCC...CTTTACTACCAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGGTAGTAAAGCTGACTCCCTGGAACTaGGGACTCAACAGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: FLSPPAYPILQLRNLVVKLTPWN*GLNRPE
Trigger: CTCAGGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAG...CTTTACTACCAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp GGGAGCCTTCTCTGTTCTCATTTCCCTCAACGGTTATCTTTATGCCTGATGTGTCATTCAAGGGAGCCCTaGCTCCCTGGAACTGAGGAC +
Preference number: 4 (lower is better)
Translates to: GSLLCSHFPQRLSLCLMCHSREP*LPGTED
Trigger: GTCCTCAGTTCCAGGGAGTCAGGGCTCCCTTGAATG...ACACATCAGGCATAAAGATAACCGTTGAGGGAAATGAGAACAGAGAAGGCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TTAACATCGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGTTCACCCTGCACACTaGACCCTCCTCTTTGCTGAG +
Preference number: 4 (lower is better)
Translates to: LTSREWTVDISECEVLARVHPAH*TLLFAE
Trigger: CTCAGCAAAGAGGAGGGTTCAGTGTGCAGGGTGAAC...CCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCGATGTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp AGTAAGATGTCAGTGTCCCTCTATAAGCTTGGTCTCTCATCTTCTCAGGAACACATTGGAGCTGCCCTCTaGCAGGGCACATGCGCACCT +
Preference number: 4 (lower is better)
Translates to: SKMSVSLYKLGLSSSQEHIGAAL*QGTCAP
Trigger: AGGTGCGCATGTGCCCTGTCAGAGGGCAGCTCCAAT...GTGTTCCTGAGAAGATGAGAGACCAAGCTTATAGAGGGACACTGACATCTTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp AGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGCCATCAATGACAATGTaGCGGAGATCTGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: SLAFLSPPAYPILQLRNLPSMTM*RRSGWP
Trigger: TGGCCAGCCAGATCTCCGTCACATTGTCATTGATGG...CAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGGTAGTAAAGGCCATCCATGACTCGTaGGGGTGTCAGGGAAAGCAG +
Preference number: 4 (lower is better)
Translates to: FLSPPAYPILQLRNLVVKAIHDS*GCQGKQ
Trigger: CTGCTTTCCCTGACACCCTCACGAGTCATGGATGGC...CTTTACTACCAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATAAGAACCCTGCTTCCTaGCTGGCTTCTTCAGGAACT +
Preference number: 4 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDKNPAS*LASSGT
Trigger: AGTTCCTGAAGAAGCCAGTCAGGAAGCAGGGTTCTT...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR TCA 90 bp GGGAGCCTTCTCTGTTCTCATTTCCCTCAACGGTTATCTTTATGCCTGATGTGTGTTCCCGCTGCAGGATaGAGTCCACCTTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: GSLLCSHFPQRLSLCLMCVPAAG*SPPCGP
Trigger: AGGACCACAAGGTGGACTTCATCCTGCAGCGGGAAC...ACACATCAGGCATAAAGATAACCGTTGAGGGAAATGAGAACAGAGAAGGCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR GCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATTCTGTAGTTCTGGGCTaGAGAGCCCCTTCAGGTATT +
Preference number: 4 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDSVVLG*RAPSGI
Trigger: AATACCTGAAGGGGCTCTGCAGCCCAGAACTACAGA...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GTCCAGACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCAGCATCCTCCCTAGTCTaGAGCAGGGCAGAGAAGTCT +
Preference number: 4 (lower is better)
Translates to: VQTILFFSLVIPLINLSPASSLV*SRAEKS
Trigger: AGACTTCTCTGCCCTGCTGCAGACTAGGGAGGATGC...TGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGTCTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGGTAGTAAAGTCACGAGATGGACCCTaGCCTCTAGATGCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: FLSPPAYPILQLRNLVVKSRDGP*PLDASC
Trigger: GCAGGAGGCATCTAGAGGGCAGGGTCCATCTCGTGA...CTTTACTACCAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAATGCCTACGAATTCCCTaGCTTCATTCAAGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKECLRIP*LHSREP
Trigger: GGGCTCCCTTGAATGAAGGCAGGGAATTCGTAGGCA...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp CAAACTACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTCGACTTTCCCGACCCTaGCACTCTGGTGCCTACGAA +
Preference number: 4 (lower is better)
Translates to: QTTPGKEYSHTQILFSGARLSRP*HSGAYE
Trigger: TTCGTAGGCACCAGAGTGGCAGGGTCGGGAAAGTCG...AGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR GCA 90 bp GTCCAGACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCAGCTTCCTGGAAACGCTaGGTGCCAGTCACCAAGTTG +
Preference number: 4 (lower is better)
Translates to: VQTILFFSLVIPLINLSPASWKR*VPVTKL
Trigger: CAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGC...TGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGTCTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp CAAACTACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTGGAGTCCGTGCACCATaGCCACGTTGCTGCCATCAA +
Preference number: 4 (lower is better)
Translates to: QTTPGKEYSHTQILFSGAGVRAP*PRCCHQ
Trigger: TTGATGGCAGCAACGTGGCCATGGTGCACGGACTCC...AGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATAGGGCCTCAGAAAGCTaGTTAATATCCCGGCAGTAC +
Preference number: 4 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDRASES*LISRQY
Trigger: GTACTGCCGGGATATTAACCAGCTTTCTGAGGCCCT...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR TCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTGAACCCATGTCCCTaGCAGCATCCTGTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKELNPCP*QHPVSF
Trigger: AAAGGAAACAGGATGCTGTCAGGGACATGGGTTCAG...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACCTTGGAATCTTTACTaGAGCGCCACTGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKEPWNLY*SATEAQ
Trigger: TTGTGCCTCAGTGGCGCTTCAGTAAAGATTCCAAGG...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp TCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGGGTCATTGGAGACAATaGTCCCATCCGTTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: SGRQFFPWIHIGDLAGILGHWRQ*SHPFLQ
Trigger: CTGAAGAAACGGATGGGATCATTGTCTCCAATGACC...CAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTGGCGACCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp GTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCAAACAGATGATATGAGGATTCTCTaGGCAGTCTTTGGAGAGGAC +
Preference number: 4 (lower is better)
Translates to: VCHLADSTFPGTDRVQTDDMRIL*AVFGED
Trigger: GTCCTCTCCAAAGACTGCCCAGAGAATCCTCATATC...ATCTGTTTGAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp ACCCAAGGAAACAGACAAAGACACTGGGACCCAGAGAGCCACATAGTTAACTCCGCCAGATCCCGGAACTaGTCATTGGAGACAATGATC +
Preference number: 4 (lower is better)
Translates to: TQGNRQRHWDPESHIVNSARSRN*SLETMI
Trigger: GATCATTGTCTCCAATGACCAGTTCCGGGATCTGGC...GGAGTTAACTATGTGGCTCTCTGGGTCCCAGTGTCTTTGTCTGTTTCCTTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAAACCCTGCTTCCTGACTaGCTTCTTCAGGAACTCATC +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKETLLPD*LLQELI
Trigger: GATGAGTTCCTGAAGAAGCCAGTCAGGAAGCAGGGT...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR TCA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACAGCCAGCTTCACCATaGACCTGTCATCATAAGAAG +
Preference number: 4 (lower is better)
Translates to: SQLSLFVASSLPYPPTKEQPASP*TCHHKK
Trigger: CTTCTTATGATGACAGGTTCATGGTGAAGCTGGCTG...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp CCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTTCCTCTGGCGGTCATTGGAGACAATaGTCCCATCCGTTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: PGKEYSHTQILFSGASSGGHWRQ*SHPFLQ
Trigger: CTGAAGAAACGGATGGGATCATTGTCTCCAATGACC...GCCAGAGGAAGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp AAACAGATACAGAGCAATGACTTGTGGGAGTTAGAATGTAAACAGCTTGTCATGGAGGCGCTCCCATTGTaGAGCCGCTGGAGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: KQIQSNDLWELECKQLVMEALPL*SRWRRE
Trigger: CTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTC...CATGACAAGCTGTTTACATTCTAACTCCCACAAGTCATTGCTCTGTATCTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp CAAACTACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTGCCATTTCGTCCCAGTaGGTCATCTGGGACCATGAA +
Preference number: 4 (lower is better)
Translates to: QTTPGKEYSHTQILFSGAAISSQ*VIWDHE
Trigger: TTCATGGTCCCAGATGACCCACTGGGACGAAATGGC...AGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS-3UTR TCA 90 bp AAACAGATACAGAGCAATGACTTGTGGGAGTTAGAATGTAAACAGCTTGTCATGGTTCACCCTGCACACTaGACCCTCCTCTTTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KQIQSNDLWELECKQLVMVHPAH*TLLFAE
Trigger: CTCAGCAAAGAGGAGGGTTCAGTGTGCAGGGTGAAC...CATGACAAGCTGTTTACATTCTAACTCCCACAAGTCATTGCTCTGTATCTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CCA 90 bp AAACAGATACAGAGCAATGACTTGTGGGAGTTAGAATGTAAACAGCTTGTCATGTTGTCCTCTTACTGCTaGCGACTTTCCCGACCCTGC +
Preference number: 4 (lower is better)
Translates to: KQIQSNDLWELECKQLVMLSSYC*RLSRPC
Trigger: GCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAA...CATGACAAGCTGTTTACATTCTAACTCCCACAAGTCATTGCTCTGTATCTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR TCA 90 bp AAACAGATACAGAGCAATGACTTGTGGGAGTTAGAATGTAAACAGCTTGTCATGTTACTGAAGCGCCACTaGGGCACAAAGACGGTTATG +
Preference number: 4 (lower is better)
Translates to: KQIQSNDLWELECKQLVMLLKRH*GTKTVM
Trigger: CATAACCGTCTTTGTGCCTCAGTGGCGCTTCAGTAA...CATGACAAGCTGTTTACATTCTAACTCCCACAAGTCATTGCTCTGTATCTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CAA 72 bp GCACAGACAGAGTTCAAACAGATACAGAGCAATGACTaGTGGGAGTTAGAATGTAAACAGCTTGTCATGACA +
Preference number: 4 (lower is better)
Translates to: AQTEFKQIQSND*WELECKQLVMT
Trigger: TGTCATGACAAGCTGTTTACATTCTAACTCCCACAAGTCATTGCTCTGTATCTGTTTGAACTCTGTCTGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
3UTR CAA 72 bp CTCTTCAACTTCTTCTGTGGCTTCTGTGTTACATTGTaGCCCTGGTTCTCATATATGCTGTGTAGACAATGT +
Preference number: 4 (lower is better)
Translates to: LFNFFCGFCVTL*PWFSYMLCRQC
Trigger: ACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAAGCCACAGAAGAAGTTGAAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS TCA 90 bp CCATGGGGGTTCCGGCGCGGGCGGAGGGCTAGGCACTCTCGGAGGTaGGGCGCTCCCATTGTGGAGCCGCTGGAGGAGAGAGGCTCCCCG +
Preference number: 5 (lower is better)
Translates to: PWGFRRGRRARHSRR*GAPIVEPLEERGSP
Trigger: CGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCTAGCCCTCCGCCCGCGCCGGAACCCCCATGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 90 bp GCGGGCGGAGGGCTAGGCACTCTCGGAGGTGAGGCGCTCCCATTGTaGAGCCGCTGGAGGAGAGAGGCTCCCCGGATTGGAGCTGCCCTC +
Preference number: 5 (lower is better)
Translates to: AGGGLGTLGGEALPL*SRWRREAPRIGAAL
Trigger: GAGGGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCTAGCCCTCCGCCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp GAGCTCCCCACCTCACGAGATGGACCCTGCCCTCTAGATGCCTCCTaGACCAGGCTTAGGAGCTCCTCCTGCACGGCCAGGGGCAGCCGC +
Preference number: 5 (lower is better)
Translates to: ELPTSRDGPCPLDAS*TRLRSSSCTARGSR
Trigger: GCGGCTGCCCCTGGCCGTGCAGGAGGAGCTCCTAAGCCTGGTGCAGGAGGCATCTAGAGGGCAGGGTCCATCTCGTGAGGTGGGGAGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp CGAGTGCCTCGCTTCCACGGAGACCCTCGGCCTCGAGCTCCAGCCTaGTGCTTGTCTCCCCTGTCTCCCCGATCTCGATCTCGGTCTCGG +
Preference number: 5 (lower is better)
Translates to: RVPRFHGDPRPRAPA*CLSPLSPRSRSRSR
Trigger: CCGAGACCGAGATCGAGATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGCGAGGCACTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp GTGCCTCGCTTCCACGGAGACCCTCGGCCTCGAGCTCCAGCCTGCTaGTTGTCTCCCCTGTCTCCCCGATCTCGATCTCGGTCTCGGTCT +
Preference number: 5 (lower is better)
Translates to: VPRFHGDPRPRAPAC*LSPLSPRSRSRSRS
Trigger: AGACCGAGACCGAGATCGAGATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGCGAGGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp CTTCCTGGAAACGCTGCGTGCCAGTCACCAAGTTGCCCCCACGAGTaGCTCGCTTCCACGGAGACCCTCGGCCTCGAGCTCCAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: LPGNAACQSPSCPHE*LASTETLGLELQPA
Trigger: AGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp TGGAGCCGCTGGAGGAGAGAGGCTCCCCGGATTGGAGCTGCCCTCTaGCAGGGCACATGCGCACCTGAAGGTTCACCCTGCACACTGAAC +
Preference number: 5 (lower is better)
Translates to: WSRWRREAPRIGAAL*QGTCAPEGSPCTLN
Trigger: GTTCAGTGTGCAGGGTGAACCTTCAGGTGCGCATGTGCCCTGTCAGAGGGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp GATCCTGTAAGGCTTCCTGGAAACGCTGCGTGCCAGTCACCAAGTTaGCCCCACGAGTGCCTCGCTTCCACGGAGACCCTCGGCCTCGAG +
Preference number: 5 (lower is better)
Translates to: DPVRLPGNAACQSPS*PHECLASTETLGLE
Trigger: CTCGAGGCCGAGGGTCTCCGTGGAAGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp CTCAGCACTCCGCCATTGTCAGGGGCTCCGGGACAAGACTGTAGCTaGAGGTCCCAGCTCAGCCGTTGCACTAACTCCTCCACCCGGCTC +
Preference number: 5 (lower is better)
Translates to: LSTPPLSGAPGQDCS*RSQLSRCTNSSTRL
Trigger: GAGCCGGGTGGAGGAGTTAGTGCAACGGCTGAGCTGGGACCTTCAGCTACAGTCTTGTCCCGGAGCCCCTGACAATGGCGGAGTGCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp GGCTCCCCGGATTGGAGCTGCCCTCTGACAGGGCACATGCGCACCTaGAGGTTCACCCTGCACACTGAACCCTCCTCTTTGCTGAGGAAC +
Preference number: 5 (lower is better)
Translates to: GSPDWSCPLTGHMRT*RFTLHTEPSSLLRN
Trigger: GTTCCTCAGCAAAGAGGAGGGTTCAGTGTGCAGGGTGAACCTTCAGGTGCGCATGTGCCCTGTCAGAGGGCAGCTCCAATCCGGGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp AGGACGCTCATTCCCACGTTGAAGATACGCTCCAAGCGAGTCTGCTaGTCCCGAACCTTGTCCTCGGCCTCCGCAGACACCGCAAAGCGG +
Preference number: 5 (lower is better)
Translates to: RTLIPTLKIRSKRVC*SRTLSSASADTAKR
Trigger: CCGCTTTGCGGTGTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGGAATGAGCGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp CCCTCTGACAGGGCACATGCGCACCTGAAGGTTCACCCTGCACACTaGACCCTCCTCTTTGCTGAGGAACCTCCTGTTTCCCCGAGGCCT +
Preference number: 5 (lower is better)
Translates to: PSDRAHAHLKVHPAH*TLLFAEEPPVSPRP
Trigger: AGGCCTCGGGGAAACAGGAGGTTCCTCAGCAAAGAGGAGGGTTCAGTGTGCAGGGTGAACCTTCAGGTGCGCATGTGCCCTGTCAGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp GAGAGGACGCTCATTCCCACGTTGAAGATACGCTCCAAGCGAGTCTaGTGCTCCCGAACCTTGTCCTCGGCCTCCGCAGACACCGCAAAG +
Preference number: 5 (lower is better)
Translates to: ERTLIPTLKIRSKRV*CSRTLSSASADTAK
Trigger: CTTTGCGGTGTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGGAATGAGCGTCCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp GCAAGGCACAGGGTGAAAGGATCCTGTAAGGCTTCCTGGAAACGCTaGGTGCCAGTCACCAAGTTGCCCCCACGAGTGCCTCGCTTCCAC +
Preference number: 5 (lower is better)
Translates to: ARHRVKGSCKASWKR*VPVTKLPPRVPRFH
Trigger: GTGGAAGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATCCTTTCACCCTGTGCCTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp GCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCGAGAGGCTCCCCGGATaGGAGCTGCCCTCTGACAGG +
Preference number: 5 (lower is better)
Translates to: ARGCFLSQLSLFVASSLPERLPG*ELPSDR
Trigger: CCTGTCAGAGGGCAGCTCCAATCCGGGGAGCCTCTC...GGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp ACGAATTCCCTGCCTTCATTCAAGGGAGCCCTGACTCCCTGGAACTaGGGACTCAACAGGCCTGAGCTCCCCACCTCACGAGATGGACCC +
Preference number: 5 (lower is better)
Translates to: TNSLPSFKGALTPWN*GLNRPELPTSRDGP
Trigger: GGGTCCATCTCGTGAGGTGGGGAGCTCAGGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAGGGCTCCCTTGAATGAAGGCAGGGAATTCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 90 bp GGCACATTGGCAAGGCACAGGGTGAAAGGATCCTGTAAGGCTTCCTaGAAACGCTGCGTGCCAGTCACCAAGTTGCCCCCACGAGTGCCT +
Preference number: 5 (lower is better)
Translates to: GTLARHRVKGSCKAS*KRCVPVTKLPPRVP
Trigger: AGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATCCTTTCACCCTGTGCCTTGCCAATGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp TGTGACGGAGATCTGGCTGGCCAGGCACATTGGCAAGGCACAGGGTaGAAGGATCCTGTAAGGCTTCCTGGAAACGCTGCGTGCCAGTCA +
Preference number: 5 (lower is better)
Translates to: CDGDLAGQAHWQGTG*KDPVRLPGNAACQS
Trigger: TGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATCCTTTCACCCTGTGCCTTGCCAATGTGCCTGGCCAGCCAGATCTCCGTCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 90 bp GGCCACGGTCCCAGAAGTACTGTACAGCGAGAGCAATACCCCGACTaGAAAAGTAATGCTGGAGTCCGTGCACCATGGCCACGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: GHGPRSTVQREQYPD*KSNAGVRAPWPRCC
Trigger: GCAGCAACGTGGCCATGGTGCACGGACTCCAGCATTACTTTTCCAGTCGGGGTATTGCTCTCGCTGTACAGTACTTCTGGGACCGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp TCTCATCTTCTCAGGAACACTCAGCCTTCCAGGGCACTCAGGGAAGGGAAGATATGCTGCTCCCGAACCTaGTCCTCGGCCTCCGCAGAC +
Preference number: 5 (lower is better)
Translates to: SHLLRNTQPSRALREGKICCSRT*SSASAD
Trigger: GTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCA...TATCTTCCCTTCCCTGAGTGCCCTGGAAGGCTGAGTGTTCCTGAGAAGATGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp CCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATTCTCTGGGCAGTCTTaGGAGAGGACGCTCATTCCC +
Preference number: 5 (lower is better)
Translates to: PSYLSPALWYERSLENVPFSGQS*ERTLIP
Trigger: GGGAATGAGCGTCCTCTCCAAAGACTGCCCAGAGAA...TGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAAGGTGAGGCGCTCCCATaGTGGAGCCGCTGGAGGAGA +
Preference number: 5 (lower is better)
Translates to: SQLSLFVASSLPYPPTKEGEALP*WSRWRR
Trigger: TCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACC...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp ACCCAAGGAAACAGACAAAGACACTGGGACCCAGAGAGCCACATAGTTAACTCCGTGCCAGTCACCAAGTaGCCCCCACGAGTGCCTCGC +
Preference number: 5 (lower is better)
Translates to: TQGNRQRHWDPESHIVNSVPVTK*PPRVPR
Trigger: GCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCAC...GGAGTTAACTATGTGGCTCTCTGGGTCCCAGTGTCTTTGTCTGTTTCCTTGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp AGTAAGGAGTGTGCCACCTTGCAGACAGTACATTCCCCGGCACAGACAGAGTTCGGCTGGCCAGGCACATaGGCAAGGCACAGGGTGAAA +
Preference number: 5 (lower is better)
Translates to: SKECATLQTVHSPAQTEFGWPGT*ARHRVK
Trigger: TTTCACCCTGTGCCTTGCCAATGTGCCTGGCCAGCC...GAACTCTGTCTGTGCCGGGGAATGTACTGTCTGCAAGGTGGCACACTCCTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp GAGGATTCTCTGGGCAGTCTTTGGAGAGGACGCTCATTCCCACGTTaGAGATACGCTCCAAGCGAGTCTGCTGCTCCCGAACCTTGTCCT +
Preference number: 5 (lower is better)
Translates to: EDSLGSLWRGRSFPR*RYAPSESAAPEPCP
Trigger: AGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGGAATGAGCGTCCTCTCCAAAGACTGCCCAGAGAATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 90 bp TCCAGGCCAGGCAGTCAAGGAAGAAACCGTGGGCTCCCAGAAAGATaGAGTGCAGTCTGGGTGGGTAGTGGATCTCACTCTGTAGTTCTG +
Preference number: 5 (lower is better)
Translates to: SRPGSQGRNRGLPER*SAVWVGSGSHSVVL
Trigger: CAGAACTACAGAGTGAGATCCACTACCCACCCAGACTGCACTGCATCTTTCTGGGAGCCCACGGTTTCTTCCTTGACTGCCTGGCCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 90 bp TGCAGAGCCCCTTCAGGTATTCCTTGGCTCTGCAGACGTTCTCCTTaGGGCCCTCAAGCTGCAACCAGATATGAGGATTCTCTGGGCAGT +
Preference number: 5 (lower is better)
Translates to: CRAPSGIPWLCRRSP*GPQAATRYEDSLGS
Trigger: ACTGCCCAGAGAATCCTCATATCTGGTTGCAGCTTGAGGGCCCCAAGGAGAACGTCTGCAGAGCCAAGGAATACCTGAAGGGGCTCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp GTCCAGACCATTCTCTTCTTCTCCCTTGTCATTCCCCTAATCAACTTGTCCCCATGCTGCTCCCGAACCTaGTCCTCGGCCTCCGCAGAC +
Preference number: 5 (lower is better)
Translates to: VQTILFFSLVIPLINLSPCCSRT*SSASAD
Trigger: GTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCA...TGGGGACAAGTTGATTAGGGGAATGACAAGGGAGAAGAAGAGAATGGTCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp CGAGGGAGTGGACAGTGGACATCTCTGAATGTGAAGTTCTGGCTAGGGAGCCTGTTCTCTGGGCAGTCTTaGGAGAGGACGCTCATTCCC +
Preference number: 5 (lower is better)
Translates to: RGSGQWTSLNVKFWLGSLFSGQS*ERTLIP
Trigger: GGGAATGAGCGTCCTCTCCAAAGACTGCCCAGAGAA...CAGGCTCCCTAGCCAGAACTTCACATTCAGAGATGTCCACTGTCCACTCCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp TGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTACCAGTATGATCGCCATCCACTaGTCAGACTCCTCAGCCAGA +
Preference number: 5 (lower is better)
Translates to: CWKGKKWSLGGHWLLATSMIAIH*SDSSAR
Trigger: TCTGGCTGAGGAGTCTGACAAGTGGATGGCGATCAT...ACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228462.2
CDS GCA 90 bp CACAGTATGACTTTGTCCTCTTACTGCTGGCGACTTTCCCGACCCTaGCACTCTGGTGCCTACGAATTCCCTGCCTTCATTCAAGGGAGC +
Preference number: 5 (lower is better)
Translates to: HSMTLSSYCWRLSRP*HSGAYEFPAFIQGS
Trigger: GCTCCCTTGAATGAAGGCAGGGAATTCGTAGGCACCAGAGTGGCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAAAGTCATACTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp CAAACTACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTGGTGAGGCGCTCCCATaGTGGAGCCGCTGGAGGAGA +
Preference number: 5 (lower is better)
Translates to: QTTPGKEYSHTQILFSGAGEALP*WSRWRR
Trigger: TCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACC...AGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp CAAACTACCCCAGGCAAAGAGTATTCCCACACTCAAATTCTCTTCTCTGGTGCTGCTCCAGCCTGCTGCTaGTCTCCCCTGTCTCCCCGA +
Preference number: 5 (lower is better)
Translates to: QTTPGKEYSHTQILFSGAAPACC*SPLSPR
Trigger: TCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGC...AGCACCAGAGAAGAGAATTTGAGTGTGGGAATACTCTTTGCCTGGGGTAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp GGGAGCCTTCTCTGTTCTCATTTCCCTCAACGGTTATCTTTATGCCTGATGTGTGTGCCAGTCACCAAGTaGCCCCCACGAGTGCCTCGC +
Preference number: 5 (lower is better)
Translates to: GSLLCSHFPQRLSLCLMCVPVTK*PPRVPR
Trigger: GCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCAC...ACACATCAGGCATAAAGATAACCGTTGAGGGAAATGAGAACAGAGAAGGCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp ACCCAAGGAAACAGACAAAGACACTGGGACCCAGAGAGCCACATAGTTAACTCCGGCTGGCCAGGCACATaGGCAAGGCACAGGGTGAAA +
Preference number: 5 (lower is better)
Translates to: TQGNRQRHWDPESHIVNSGWPGT*ARHRVK
Trigger: TTTCACCCTGTGCCTTGCCAATGTGCCTGGCCAGCC...GGAGTTAACTATGTGGCTCTCTGGGTCCCAGTGTCTTTGTCTGTTTCCTTGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp GGAGCAGCCAGAGGGTGCTTTCTTTCTCAGCTTAGCCTTTTTGTCGCCTCCAGCTCCCGGAACTGGTCATaGGAGACAATGATCCCATCC +
Preference number: 5 (lower is better)
Translates to: GAARGCFLSQLSLFVASSSRNWS*ETMIPS
Trigger: GGATGGGATCATTGTCTCCAATGACCAGTTCCGGGA...GCTGGAGGCGACAAAAAGGCTAAGCTGAGAAAGAAAGCACCCTCTGGCTGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 90 bp GTTCTCCTTGGGGCCCTCAAGCTGCAACCAGATATGAGGATTCTCTaGGCAGTCTTTGGAGAGGACGCTCATTCCCACGTTGAAGATACG +
Preference number: 5 (lower is better)
Translates to: VLLGALKLQPDMRIL*AVFGEDAHSHVEDT
Trigger: CGTATCTTCAACGTGGGAATGAGCGTCCTCTCCAAAGACTGCCCAGAGAATCCTCATATCTGGTTGCAGCTTGAGGGCCCCAAGGAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAATTCCGAATGCCACCATaGCTCCTGTCCGCGTCCTTC +
Preference number: 5 (lower is better)
Translates to: SQLSLFVASSLPYPPTKEFRMPP*LLSASF
Trigger: GAAGGACGCGGACAGGAGCAATGGTGGCATTCGGAA...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS CCA 90 bp TTTCCTTTCCTCCTTCTCCACAGTATGACTTTGTCCTCTTACTGCTaGCGACTTTCCCGACCCTGCCACTCTGGTGCCTACGAATTCCCT +
Preference number: 5 (lower is better)
Translates to: FPFLLLHSMTLSSYC*RLSRPCHSGAYEFP
Trigger: AGGGAATTCGTAGGCACCAGAGTGGCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAAAGTCATACTGTGGAGAAGGAGGAAAGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 90 bp ATGATCGCCATCCACTTGTCAGACTCCTCAGCCAGATCCCGGAACTaGTCATTGGAGACAATGATCCCATCCGTTTCTTCAGCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: MIAIHLSDSSARSRN*SLETMIPSVSSASF
Trigger: GAAGCTGGCTGAAGAAACGGATGGGATCATTGTCTCCAATGACCAGTTCCGGGATCTGGCTGAGGAGTCTGACAAGTGGATGGCGATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp TCTCAGCTTAGCCTTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAATCCCGGAACTGGTCATaGGAGACAATGATCCCATCC +
Preference number: 5 (lower is better)
Translates to: SQLSLFVASSLPYPPTKESRNWS*ETMIPS
Trigger: GGATGGGATCATTGTCTCCAATGACCAGTTCCGGGA...TTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAAGGCTAAGCTGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS-3UTR CAA 90 bp TTTTTGTCGCCTCCAGCCTACCCTATCCTCCAACTAAGGAACTTGGTAGTAAAGATGATCGCCATCCACTaGTCAGACTCCTCAGCCAGA +
Preference number: 5 (lower is better)
Translates to: FLSPPAYPILQLRNLVVKMIAIH*SDSSAR
Trigger: TCTGGCTGAGGAGTCTGACAAGTGGATGGCGATCAT...CTTTACTACCAAGTTCCTTAGTTGGAGGATAGGGTAGGCTGGAGGCGACAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 90 bp GAACCTGTCATCATAAGAAGAAATCCTCTTGCCATCCATGACTCGTaGGGGTGTCAGGGAAAGCAGACTCAGGGAATACAACTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: EPVIIRRNPLAIHDS*GCQGKQTQGIQLLQ
Trigger: CTGCAGAAGTTGTATTCCCTGAGTCTGCTTTCCCTGACACCCTCACGAGTCATGGATGGCAAGAGGATTTCTTCTTATGATGACAGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 90 bp GGCGCGGGCGGAGGGCTAGGCACTCTCGGAGGTGAGGCGCTCCCATaGTGGAGCCGCTGGAGGAGAGAGGCTCCCCGGATTGGAGCTGCC +
Preference number: 6 (lower is better)
Translates to: GAGGGLGTLGGEALP*WSRWRREAPRIGAA
Trigger: GGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCTAGCCCTCCGCCCGCGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp TTCCGGCGCGGGCGGAGGGCTAGGCACTCTCGGAGGTaGGGCGCTCCCATTGTGGAGCCGCTGGAGGAGAGA +
Preference number: 6 (lower is better)
Translates to: FRRGRRARHSRR*GAPIVEPLEER
Trigger: TCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCTAGCCCTCCGCCCGCGCCGGAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp CCGATCTCGATCTCGGTCTCGGTCTCCACAGGGCCATaGGGGTTCCGGCGCGGGCGGAGGGCTAGGCACTCT +
Preference number: 6 (lower is better)
Translates to: PISISVSVSTGP*GFRRGRRARHS
Trigger: AGAGTGCCTAGCCCTCCGCCCGCGCCGGAACCCCCATGGCCCTGTGGAGACCGAGACCGAGATCGAGATCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp ACTCTCGGAGGTGAGGCGCTCCCATTGTGGAGCCGCTaGAGGAGAGAGGCTCCCCGGATTGGAGCTGCCCTC +
Preference number: 6 (lower is better)
Translates to: TLGGEALPLWSR*RREAPRIGAAL
Trigger: GAGGGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCTCCGAGAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp GGGCTAGGCACTCTCGGAGGTGAGGCGCTCCCATTGTaGAGCCGCTGGAGGAGAGAGGCTCCCCGGATTGGA +
Preference number: 6 (lower is better)
Translates to: GLGTLGGEALPL*SRWRREAPRIG
Trigger: TCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCTCCGAGAGTGCCTAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 90 bp CCTCGCTTCCACGGAGACCCTCGGCCTCGAGCTCCAGCCTGCTGCTaGTCTCCCCTGTCTCCCCGATCTCGATCTCGGTCTCGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: PRFHGDPRPRAPACC*SPLSPRSRSRSRSP
Trigger: TGGAGACCGAGACCGAGATCGAGATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGCGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp TTCCACGGAGACCCTCGGCCTCGAGCTCCAGCCTGCTaGTTGTCTCCCCTGTCTCCCCGATCTCGATCTCGG +
Preference number: 6 (lower is better)
Translates to: FHGDPRPRAPAC*LSPLSPRSRSR
Trigger: CCGAGATCGAGATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp CGCTTCCACGGAGACCCTCGGCCTCGAGCTCCAGCCTaGTGCTTGTCTCCCCTGTCTCCCCGATCTCGATCT +
Preference number: 6 (lower is better)
Translates to: RFHGDPRPRAPA*CLSPLSPRSRS
Trigger: AGATCGAGATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 72 bp CATTGTGGAGCCGCTGGAGGAGAGAGGCTCCCCGGATaGGAGCTGCCCTCTGACAGGGCACATGCGCACCTG +
Preference number: 6 (lower is better)
Translates to: HCGAAGGERLPG*ELPSDRAHAHL
Trigger: CAGGTGCGCATGTGCCCTGTCAGAGGGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 72 bp CACGGAGACCCTCGGCCTCGAGCTCCAGCCTGCTGCTaGTCTCCCCTGTCTCCCCGATCTCGATCTCGGTCT +
Preference number: 6 (lower is better)
Translates to: HGDPRPRAPACC*SPLSPRSRSRS
Trigger: AGACCGAGATCGAGATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 90 bp CCCACGTTGAAGATACGCTCCAAGCGAGTCTGCTGCTCCCGAACCTaGTCCTCGGCCTCCGCAGACACCGCAAAGCGGTCGGGAGTCGGG +
Preference number: 6 (lower is better)
Translates to: PTLKIRSKRVCCSRT*SSASADTAKRSGVG
Trigger: CCCGACTCCCGACCGCTTTGCGGTGTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 90 bp AGGCGCTCCCATTGTGGAGCCGCTGGAGGAGAGAGGCTCCCCGGATaGGAGCTGCCCTCTGACAGGGCACATGCGCACCTGAAGGTTCAC +
Preference number: 6 (lower is better)
Translates to: RRSHCGAAGGERLPG*ELPSDRAHAHLKVH
Trigger: GTGAACCTTCAGGTGCGCATGTGCCCTGTCAGAGGGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp ACCTCACGAGATGGACCCTGCCCTCTAGATGCCTCCTaGACCAGGCTTAGGAGCTCCTCCTGCACGGCCAGG +
Preference number: 6 (lower is better)
Translates to: TSRDGPCPLDAS*TRLRSSSCTAR
Trigger: CCTGGCCGTGCAGGAGGAGCTCCTAAGCCTGGTGCAGGAGGCATCTAGAGGGCAGGGTCCATCTCGTGAGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp AGGCTTCCTGGAAACGCTGCGTGCCAGTCACCAAGTTaGCCCCACGAGTGCCTCGCTTCCACGGAGACCCTC +
Preference number: 6 (lower is better)
Translates to: RLPGNAACQSPS*PHECLASTETL
Trigger: GAGGGTCTCCGTGGAAGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 90 bp GGATCCTGTAAGGCTTCCTGGAAACGCTGCGTGCCAGTCACCAAGTaGCCCCCACGAGTGCCTCGCTTCCACGGAGACCCTCGGCCTCGA +
Preference number: 6 (lower is better)
Translates to: GSCKASWKRCVPVTK*PPRVPRFHGDPRPR
Trigger: TCGAGGCCGAGGGTCTCCGTGGAAGCGAGGCACTCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp AGCCCTGACTCCCTGGAACTGAGGACTCAACAGGCCTaGGCTCCCCACCTCACGAGATGGACCCTGCCCTCT +
Preference number: 6 (lower is better)
Translates to: SPDSLELRTQQA*APHLTRWTLPS
Trigger: AGAGGGCAGGGTCCATCTCGTGAGGTGGGGAGCTCAGGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 72 bp AAGATACGCTCCAAGCGAGTCTGCTGCTCCCGAACCTaGTCCTCGGCCTCCGCAGACACCGCAAAGCGGTCG +
Preference number: 6 (lower is better)
Translates to: KIRSKRVCCSRT*SSASADTAKRS
Trigger: CGACCGCTTTGCGGTGTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp CCGCCATTGTCAGGGGCTCCGGGACAAGACTGTAGCTaGAGGTCCCAGCTCAGCCGTTGCACTAACTCCTCC +
Preference number: 6 (lower is better)
Translates to: PPLSGAPGQDCS*RSQLSRCTNSS
Trigger: GGAGGAGTTAGTGCAACGGCTGAGCTGGGACCTTCAGCTACAGTCTTGTCCCGGAGCCCCTGACAATGGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp CAGCTCAGCCGTTGCACTAACTCCTCCACCCGGCTCTaGGCCATCACAAACGCCTCGGTTAGGCCACTGATC +
Preference number: 6 (lower is better)
Translates to: QLSRCTNSSTRL*AITNASVRPLI
Trigger: GATCAGTGGCCTAACCGAGGCGTTTGTGATGGCCCAGAGCCGGGTGGAGGAGTTAGTGCAACGGCTGAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp CTGCCTTCATTCAAGGGAGCCCTGACTCCCTGGAACTaGGGACTCAACAGGCCTGAGCTCCCCACCTCACGA +
Preference number: 6 (lower is better)
Translates to: LPSFKGALTPWN*GLNRPELPTSR
Trigger: TCGTGAGGTGGGGAGCTCAGGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAGGGCTCCCTTGAATGAAGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp ATTCCCACGTTGAAGATACGCTCCAAGCGAGTCTGCTaGTCCCGAACCTTGTCCTCGGCCTCCGCAGACACC +
Preference number: 6 (lower is better)
Translates to: IPTLKIRSKRVC*SRTLSSASADT
Trigger: GGTGTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp CTCATTCCCACGTTGAAGATACGCTCCAAGCGAGTCTaGTGCTCCCGAACCTTGTCCTCGGCCTCCGCAGAC +
Preference number: 6 (lower is better)
Translates to: LIPTLKIRSKRV*CSRTLSSASAD
Trigger: GTCTGCGGAGGCCGAGGACAAGGTTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGGAATGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp GCAAGGCACAGGGTGAAAGGATCCTGTAAGGCTTCCTaGAAACGCTGCGTGCCAGTCACCAAGTTGCCCCCA +
Preference number: 6 (lower is better)
Translates to: ARHRVKGSCKAS*KRCVPVTKLPP
Trigger: TGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATCCTTTCACCCTGTGCCTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CAA 72 bp AAGGGCAGCAGGCGCTCTCTGATGATCGCCATCCACTaGTCAGACTCCTCAGCCAGATCCCGGAACTGGTCA +
Preference number: 6 (lower is better)
Translates to: KGSRRSLMIAIH*SDSSARSRNWS
Trigger: TGACCAGTTCCGGGATCTGGCTGAGGAGTCTGACAAGTGGATGGCGATCATCAGAGAGCGCCTGCTGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022831.5
CDS TCA 72 bp TGCCTACGAATTCCCTGCCTTCATTCAAGGGAGCCCTaGCTCCCTGGAACTGAGGACTCAACAGGCCTGAGC +
Preference number: 6 (lower is better)
Translates to: CLRIPCLHSREP*LPGTEDSTGLS
Trigger: GCTCAGGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAGGGCTCCCTTGAATGAAGGCAGGGAATTCGTAGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp AGGGCACATGCGCACCTGAAGGTTCACCCTGCACACTaGACCCTCCTCTTTGCTGAGGAACCTCCTGTTTCC +
Preference number: 6 (lower is better)
Translates to: RAHAHLKVHPAH*TLLFAEEPPVS
Trigger: GGAAACAGGAGGTTCCTCAGCAAAGAGGAGGGTTCAGTGTGCAGGGTGAACCTTCAGGTGCGCATGTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp CTCTTACTGCTGGCGACTTTCCCGACCCTGCCACTCTaGTGCCTACGAATTCCCTGCCTTCATTCAAGGGAG +
Preference number: 6 (lower is better)
Translates to: LLLLATFPTLPL*CLRIPCLHSRE
Trigger: CTCCCTTGAATGAAGGCAGGGAATTCGTAGGCACCAGAGTGGCAGGGTCGGGAAAGTCGCCAGCAGTAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp ACGTTCTCCTTGGGGCCCTCAAGCTGCAACCAGATATaGGGATTCTCTGGGCAGTCTTTGGAGAGGACGCTC +
Preference number: 6 (lower is better)
Translates to: TFSLGPSSCNQI*GFSGQSLERTL
Trigger: GAGCGTCCTCTCCAAAGACTGCCCAGAGAATCCTCATATCTGGTTGCAGCTTGAGGGCCCCAAGGAGAACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp GGCAGTCAAGGAAGAAACCGTGGGCTCCCAGAAAGATaGAGTGCAGTCTGGGTGGGTAGTGGATCTCACTCT +
Preference number: 6 (lower is better)
Translates to: GSQGRNRGLPER*SAVWVGSGSHS
Trigger: AGAGTGAGATCCACTACCCACCCAGACTGCACTGCATCTTTCTGGGAGCCCACGGTTTCTTCCTTGACTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS GCA 72 bp TTCCTCCTTCTCCACAGTATGACTTTGTCCTCTTACTaGTGGCGACTTTCCCGACCCTGCCACTCTGGTGCC +
Preference number: 6 (lower is better)
Translates to: FLLLHSMTLSSY*WRLSRPCHSGA
Trigger: GGCACCAGAGTGGCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAAAGTCATACTGTGGAGAAGGAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp GGGGCCCTCAAGCTGCAACCAGATATGAGGATTCTCTaGGCAGTCTTTGGAGAGGACGCTCATTCCCACGTT +
Preference number: 6 (lower is better)
Translates to: GALKLQPDMRIL*AVFGEDAHSHV
Trigger: AACGTGGGAATGAGCGTCCTCTCCAAAGACTGCCCAGAGAATCCTCATATCTGGTTGCAGCTTGAGGGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp AGAAACCGTGGGCTCCCAGAAAGATGCAGTGCAGTCTaGGTGGGTAGTGGATCTCACTCTGTAGTTCTGGGC +
Preference number: 6 (lower is better)
Translates to: RNRGLPERCSAV*VGSGSHSVVLG
Trigger: GCCCAGAACTACAGAGTGAGATCCACTACCCACCCAGACTGCACTGCATCTTTCTGGGAGCCCACGGTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp CTCCTTCTCCACAGTATGACTTTGTCCTCTTACTGCTaGCGACTTTCCCGACCCTGCCACTCTGGTGCCTAC +
Preference number: 6 (lower is better)
Translates to: LLLHSMTLSSYC*RLSRPCHSGAY
Trigger: GTAGGCACCAGAGTGGCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAAAGTCATACTGTGGAGAAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp CTCTCTCTGACCTTGGAATCTTTACTGAAGCGCCACTaGGGCACAAAGACGGTTATGTCACGGTGGCCACGG +
Preference number: 6 (lower is better)
Translates to: LSLTLESLLKRH*GTKTVMSRWPR
Trigger: CCGTGGCCACCGTGACATAACCGTCTTTGTGCCTCAGTGGCGCTTCAGTAAAGATTCCAAGGTCAGAGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp CCCAGAAGTACTGTACAGCGAGAGCAATACCCCGACTaGAAAAGTAATGCTGGAGTCCGTGCACCATGGCCA +
Preference number: 6 (lower is better)
Translates to: PRSTVQREQYPD*KSNAGVRAPWP
Trigger: TGGCCATGGTGCACGGACTCCAGCATTACTTTTCCAGTCGGGGTATTGCTCTCGCTGTACAGTACTTCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp ACCTGTCATCATAAGAAGAAATCCTCTTGCCATCCATaGCTCGTGAGGGTGTCAGGGAAAGCAGACTCAGGG +
Preference number: 6 (lower is better)
Translates to: TCHHKKKSSCHP*LVRVSGKADSG
Trigger: CCCTGAGTCTGCTTTCCCTGACACCCTCACGAGTCATGGATGGCAAGAGGATTTCTTCTTATGATGACAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS CCA 72 bp ATCCACTTGTCAGACTCCTCAGCCAGATCCCGGAACTaGTCATTGGAGACAATGATCCCATCCGTTTCTTCA +
Preference number: 6 (lower is better)
Translates to: IHLSDSSARSRN*SLETMIPSVSS
Trigger: TGAAGAAACGGATGGGATCATTGTCTCCAATGACCAGTTCCGGGATCTGGCTGAGGAGTCTGACAAGTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2
CDS TCA 72 bp ATCATAAGAAGAAATCCTCTTGCCATCCATGACTCGTaGGGGTGTCAGGGAAAGCAGACTCAGGGAATACAA +
Preference number: 6 (lower is better)
Translates to: IIRRNPLAIHDS*GCQGKQTQGIQ
Trigger: TTGTATTCCCTGAGTCTGCTTTCCCTGACACCCTCACGAGTCATGGATGGCAAGAGGATTTCTTCTTATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022831.5
ENSMUST00000228462.2