Pregenerated sensors for KHDRBS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028790Ensembl transcript IDs: ENSMUST00000066257.6, ENSMUST00000129342.8
Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAGTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTaGATCTCTAGGATTGGAAGGGTAACCCTCCTGGGCACCCAGGCT | + |
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Preference number: 1 (lower is better) Translates to: PVYGASSSPGQLNCY*ISRIGRVTLLGTQA Trigger: AGCCTGGGTGCCCAGGAGGGTTACCCTTCCAATCCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR TCA 90 bp | GATCCTGCCTGGCTTTCTGTGAGAAAATCAGATCAAGAGGTGGGGTaGAACACAACTGTTGACTCCTCTCCTGGGTTTCTATGGCCCAGG | + |
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Preference number: 1 (lower is better) Translates to: DPAWLSVRKSDQEVG*NTTVDSSPGFLWPR Trigger: CCTGGGCCATAGAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACCCCACCTCTTGATCTGATTTTCTCACAGAAAGCCAGGCAGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR CCA 90 bp | TGTTCTGACCTGGAGAGCCACACCAGGGATTTAGTCCCTGGTCTTTaGTGTTTCAAGACAGGTTTGTGTAGACCTGGCTGTCCTAGAACT | + |
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Preference number: 1 (lower is better) Translates to: CSDLESHTRDLVPGL*CFKTGLCRPGCPRT Trigger: AGTTCTAGGACAGCCAGGTCTACACAAACCTGTCTTGAAACACCAAAGACCAGGGACTAAATCCCTGGTGTGGCTCTCCAGGTCAGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR CCA 90 bp | GTGGTATCTGAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTaGTGTCATTCTTTAAGGCCACCTAGGGGCTCTACAGAAGACGGA | + |
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Preference number: 1 (lower is better) Translates to: VVSEHRWSQCLSTEI*CHSLRPPRGSTEDG Trigger: TCCGTCTTCTGTAGAGCCCCTAGGTGGCCTTAAAGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTCAGATACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR TCA 90 bp | TTCGTTCACTACTCACTACTTCACTCTCACCGTCTCTGCCTTTCCTaGTATGGGTCTCTGATACCCATTCTATTCCAGGAAATGCCTCAG | + |
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Preference number: 1 (lower is better) Translates to: FVHYSLLHSHRLCLS*YGSLIPILFQEMPQ Trigger: CTGAGGCATTTCCTGGAATAGAATGGGTATCAGAGACCCATATCAGGAAAGGCAGAGACGGTGAGAGTGAAGTAGTGAGTAGTGAACGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR TCA 90 bp | ACTACTGCCGTTGTTAACATTGTGGTTTTACATCTTAAGCAGCCCTaGATTTTGAAATGTAGCCTAGTTTGGGATTCTGCAACTATGACT | + |
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Preference number: 1 (lower is better) Translates to: TTAVVNIVVLHLKQP*ILKCSLVWDSATMT Trigger: AGTCATAGTTGCAGAATCCCAAACTAGGCTACATTTCAAAATTCAGGGCTGCTTAAGATGTAAAACCACAATGTTAACAACGGCAGTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR TCA 90 bp | CTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGCGTCTCTGCCTTTCCTaGTATGGGTCTCTGATACCC | + |
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Preference number: 2 (lower is better) Translates to: LWPRPASIQQVAPGIQALRLCLS*YGSLIP Trigger: GGGTATCAGAGACCCATATCAGGAAAGGCAGAGACG...CAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR TCA 90 bp | GTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTGCATCTCTAGGGCACCCAGGCTTTGCTaGATTGTGGTATCTGAACAC | + |
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Preference number: 2 (lower is better) Translates to: VYGASSSPGQLNCYCISRAPRLC*IVVSEH Trigger: GTGTTCAGATACCACAATTCAGCAAAGCCTGGGTGC...CCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR TCA 90 bp | ATCAAGAGGTGGGGTGAAACACAACTGTTGACTCCTCTCCTGGGTTTCTATGGCGGATCCAGGCTCTGTTaGCAGCTGGAGCACTGGGTA | + |
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Preference number: 2 (lower is better) Translates to: IKRWGETQLLTPLLGFYGGSRLC*QLEHWV Trigger: TACCCAGTGCTCCAGCTGTCAACAGAGCCTGGATCC...GCCATAGAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACCCCACCTCTTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTTCTGGGAGTCCTCTGGAATGTCCAAGGGCACCCAGGCTATAGGTTCCAATCTGTCTCTGCCTCCTaGGTGCGGGGATTAATGGTG | + |
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Preference number: 2 (lower is better) Translates to: SFLGVLWNVQGHPGYRFQSVSAS*VRGLMV Trigger: CACCATTAATCCCCGCACTCAGGAGGCAGAGACAGA...TTGGAACCTATAGCCTGGGTGCCCTTGGACATTCCAGAGGACTCCCAGAAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR GCA 90 bp | GAGTTCAGGACCAGTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACCTAGTTTGGGATTCTaGAACTATGACTTTACGGGG | + |
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Preference number: 2 (lower is better) Translates to: EFRTSLWRQLLPRPAQLLPSLGF*NYDFTG Trigger: CCCCGTAAAGTCATAGTTGCAGAATCCCAAACTAGG...TAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGACTGGTCCTGAACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR TCA 90 bp | AGGCCACCTAGGGGCTCTACAGAAGACGGAAGGCAGGATGGCTGGCACTTGAAGCTGCTGCAGACATTTTaGCATAAGTTTAAGCTACCT | + |
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Preference number: 2 (lower is better) Translates to: RPPRGSTEDGRQDGWHLKLLQTF*HKFKLP Trigger: AGGTAGCTTAAACTTATGTCAAAATGTCTGCAGCAG...CTTCAAGTGCCAGCCATCCTGCCTTCCGTCTTCTGTAGAGCCCCTAGGTGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR GCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATTCTATTCCAGGAAATaGCTCAGGAATTTTCAGTCA | + |
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Preference number: 2 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGFYSRK*LRNFQS Trigger: TGACTGAAAATTCCTGAGGCATTTCCTGGAATAGAA...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR TCA 90 bp | GTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTGCATCTCTAGGCATCTTAAGCAGCCCTaGATTTTGAAATGTAGCCTA | + |
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Preference number: 2 (lower is better) Translates to: VYGASSSPGQLNCYCISRHLKQP*ILKCSL Trigger: TAGGCTACATTTCAAAATTCAGGGCTGCTTAAGATG...CCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | AGTACAGAGGGGATGCAGAACAGCCCCACCCTTCAAGAACTTGTGGACAAGTGCCAGGGATTTAGTCCCTaGTCTTTGGTGTTTCAAGAC | + |
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Preference number: 2 (lower is better) Translates to: STEGMQNSPTLQELVDKCQGFSP*SLVFQD Trigger: GTCTTGAAACACCAAAGACCAGGGACTAAATCCCTG...GCACTTGTCCACAAGTTCTTGAAGGGTGGGGCTGTTCTGCATCCCCTCTGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR GCA 90 bp | GAGTTCAGGACCAGTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTATATGACTTTACGGGGTaGCTCAAATCAAAACTAAGA | + |
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Preference number: 2 (lower is better) Translates to: EFRTSLWRQLLPRPAQLLYDFTG*LKSKLR Trigger: TCTTAGTTTTGATTTGAGGCACCCCGTAAAGTCATA...TAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGACTGGTCCTGAACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR TCA 90 bp | CAGGATGGCTGGCACTTGAAGTACCTATCTGTGTCAGTTGGGTTTTTCTCTCTAGGGATTCTGCAACTATaGCTTTACGGGGTGCCTCAA | + |
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Preference number: 2 (lower is better) Translates to: QDGWHLKYLSVSVGFFSLGILQL*LYGVPQ Trigger: TTGAGGCACCCCGTAAAGTCATAGTTGCAGAATCCC...TAGAGAGAAAAACCCAACTGACACAGATAGGTACTTCAAGTGCCAGCCATCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | AGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGGAGCTGAGTGTTCTGACCTaGAGAGCCACACCAGGGATT | + |
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Preference number: 2 (lower is better) Translates to: RTFYGKLSRNKRPGIAQELSVLT*RATPGI Trigger: AATCCCTGGTGTGGCTCTCCAGGTCAGAACACTCAG...CTCCTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTTCTGGGAGTCCTCTGGAATGTCCAAGGGCACCCAGGCTATAGGTTCCAATATTGTAAGATAAAGTaGACCCAGGTCCTCTACAAG | + |
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Preference number: 2 (lower is better) Translates to: SFLGVLWNVQGHPGYRFQYCKIK*TQVLYK Trigger: CTTGTAGAGGACCTGGGTTCACTTTATCTTACAATA...TTGGAACCTATAGCCTGGGTGCCCTTGGACATTCCAGAGGACTCCCAGAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR TCA 90 bp | GTGACTTTTTACATAGTGACAACCAATTCCACTGTTTTCAGTCTTGTGGGAGGGAGGATGGCTGGCACTTaGAGTACCTATCTGTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: VTFYIVTTNSTVFSLVGGRMAGT*STYLCQ Trigger: CTGACACAGATAGGTACTTCAAGTGCCAGCCATCCT...CCCTCCCACAAGACTGAAAACAGTGGAATTGGTTGTCACTATGTAAAAAGTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | GTATCTGAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTGGTGTCATTCTAACTGCCTTCTACCTTaGGAACAGCTCAAAACTGAC | + |
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Preference number: 2 (lower is better) Translates to: VSEHRWSQCLSTEIWCHSNCLLP*EQLKTD Trigger: GTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTT...AGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTCAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | AGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGGAGTTAGTCCCTGGTCTTTaGTGTTTCAAGACAGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: RTFYGKLSRNKRPGIAQELVPGL*CFKTGL Trigger: CAAACCTGTCTTGAAACACCAAAGACCAGGGACTAA...CTCCTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR GCA 90 bp | AGCTCACTTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATATACAGAAGCCAGAATaGAGAGTTAAGAATGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: SSLLHGGTTAVVNIVVLHIQKPE*RVKNGG Trigger: TCCTCCATTCTTAACTCTGCATTCTGGCTTCTGTAT...ATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAAGTGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | AGCTCACTTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATATTACTTGTCTGTTGTaGGTAAAGCAACAGGAATCC | + |
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Preference number: 2 (lower is better) Translates to: SSLLHGGTTAVVNIVVLHITCLL*VKQQES Trigger: GGATTCCTGTTGCTTTACCCACAACAGACAAGTAAT...ATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAAGTGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | GTGACTTTTTACATAGTGACAACCAATTCCACTGTTTTCAGTCTTGTGGGAGGGAAATGTAGCCTAGTTTaGGATTCTGCAACTATGACT | + |
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Preference number: 2 (lower is better) Translates to: VTFYIVTTNSTVFSLVGGKCSLV*DSATMT Trigger: AGTCATAGTTGCAGAATCCCAAACTAGGCTACATTT...CCCTCCCACAAGACTGAAAACAGTGGAATTGGTTGTCACTATGTAAAAAGTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR GCA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCACTTTTCTCATTCAGCTaGAGTGTCCCTTTTTATATC | + |
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Preference number: 2 (lower is better) Translates to: THVAFNLPKTKWEDGTNPLFSFS*SVPFYI Trigger: GATATAAAAAGGGACACTGCAGCTGAATGAGAAAAG...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CCA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCACCGTTGTTAACATTGTaGTTTTACATCTTAAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: THVAFNLPKTKWEDGTNPPLLTL*FYILSS Trigger: GCTGCTTAAGATGTAAAACCACAATGTTAACAACGG...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR GCA 72 bp | GGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTaGATCTCTAGGATTGGAAGGGTAACCCTCCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: GASSSPGQLNCY*ISRIGRVTLLG Trigger: GCCCAGGAGGGTTACCCTTCCAATCCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR CCA 72 bp | TTTCAGTCTTGTGGGAGGGAGTTCAGGACCAGTCTATaGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTA | + |
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Preference number: 3 (lower is better) Translates to: FQSCGREFRTSL*RQLLPRPAQLL Trigger: TAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGACTGGTCCTGAACTCCCTCCCACAAGACTGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CAA 90 bp | GTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTGCATCTCTAGGCCAGGCTTTGCTGAATaGTGGTATCTGAACACAGGT | + |
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Preference number: 3 (lower is better) Translates to: VYGASSSPGQLNCYCISRPGFAE*WYLNTG Trigger: ACCTGTGTTCAGATACCACAATTCAGCAAAGCCTGG...CCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CAA 90 bp | ACAGGAGCTGAGTGTTCTGACCTGGAGAGCCACACCAGGGATTTAGTCCCTGGTGGTGAAACACAACTGTaGACTCCTCTCCTGGGTTTC | + |
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Preference number: 3 (lower is better) Translates to: TGAECSDLESHTRDLVPGGETQL*TPLLGF Trigger: GAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACC...ACCAGGGACTAAATCCCTGGTGTGGCTCTCCAGGTCAGAACACTCAGCTCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR CAA 90 bp | GTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTGCATCTCTAGGTCTGAGCACAGAGATTaGGTGTCATTCTTTAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: VYGASSSPGQLNCYCISRSEHRD*VSFFKA Trigger: GGCCTTAAAGAATGACACCAAATCTCTGTGCTCAGA...CCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR CCA 72 bp | CTGGAGAGCCACACCAGGGATTTAGTCCCTGGTCTTTaGTGTTTCAAGACAGGTTTGTGTAGACCTGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LESHTRDLVPGL*CFKTGLCRPGC Trigger: ACAGCCAGGTCTACACAAACCTGTCTTGAAACACCAAAGACCAGGGACTAAATCCCTGGTGTGGCTCTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR CCA 72 bp | TTTCCTTCACAGATTACAGAGGGTGACCTTCTTTTCTaGGAGTCCTCTGGAATGTCCAAGGGCACCCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: FPSQITEGDLLF*ESSGMSKGTQA Trigger: AGCCTGGGTGCCCTTGGACATTCCAGAGGACTCCCAGAAAAGAAGGTCACCCTCTGTAATCTGTGAAGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR CCA 72 bp | AGGGGATGCAGAACAGCCCCACCCTTCAAGAACTTGTaGACAAGTGCTAACAAAGACGAACACAGGCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: RGCRTAPPFKNL*TSANKDEHRLR Trigger: TCTGAGCCTGTGTTCGTCTTTGTTAGCACTTGTCCACAAGTTCTTGAAGGGTGGGGCTGTTCTGCATCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR TCA 72 bp | GCTCTACAGAAGACGGAAGGCAGGATGGCTGGCACTTaGAGTACCTATCTGTGTCAGTTGGGTTTTTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: ALQKTEGRMAGT*STYLCQLGFSL Trigger: GAGAGAAAAACCCAACTGACACAGATAGGTACTTCAAGTGCCAGCCATCCTGCCTTCCGTCTTCTGTAGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CAA 90 bp | TGCCCATCATGCACTGCTACAGGCAGCTTGGCACTTCACACAAGAGGATTTTTCCAAGCAATGCCACTTTaGAAACTAACATGTTTGTGG | + |
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Preference number: 3 (lower is better) Translates to: CPSCTATGSLALHTRGFFQAMPL*KLTCLW Trigger: CCACAAACATGTTAGTTTCAAAAGTGGCATTGCTTG...GAAAAATCCTCTTGTGTGAAGTGCCAAGCTGCCTGTAGCAGTGCATGATGGGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR TCA 72 bp | TACTCACTACTTCACTCTCACCGTCTCTGCCTTTCCTaGTATGGGTCTCTGATACCCATTCTATTCCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: YSLLHSHRLCLS*YGSLIPILFQE Trigger: TTCCTGGAATAGAATGGGTATCAGAGACCCATATCAGGAAAGGCAGAGACGGTGAGAGTGAAGTAGTGAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR TCA 72 bp | TGGCTTTCTGTGAGAAAATCAGATCAAGAGGTGGGGTaGAACACAACTGTTGACTCCTCTCCTGGGTTTCTA | + |
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Preference number: 3 (lower is better) Translates to: WLSVRKSDQEVG*NTTVDSSPGFL Trigger: TAGAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACCCCACCTCTTGATCTGATTTTCTCACAGAAAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR TCA 72 bp | AATGATTCTCAACTTTCCTTCACAGATTACAGAGGGTaGCCTTCTTTTCTGGGAGTCCTCTGGAATGTCCAA | + |
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Preference number: 3 (lower is better) Translates to: NDSQLSFTDYRG*PSFLGVLWNVQ Trigger: TTGGACATTCCAGAGGACTCCCAGAAAAGAAGGTCACCCTCTGTAATCTGTGAAGGAAAGTTGAGAATCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| 3UTR-3UTR CAA 90 bp | GTATCTGAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTGGTGTCATTCTCACTTAGACAATTACTaGTCTGTTGTGGGTAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: VSEHRWSQCLSTEIWCHSHLDNY*SVVGKA Trigger: TGCTTTACCCACAACAGACAAGTAATTGTCTAAGTG...AGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTCAGATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR-3UTR CAA 90 bp | GTTGAGACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGACAATTACTTGTCTGTaGTGGGTAAAGCAACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: VETYLTAFYLGNSSKLTMTITCL*WVKQQE Trigger: TTCCTGTTGCTTTACCCACAACAGACAAGTAATTGT...CATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTCTCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| 3UTR TCA 72 bp | GTTGTTAACATTGTGGTTTTACATCTTAAGCAGCCCTaGATTTTGAAATGTAGCCTAGTTTGGGATTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: VVNIVVLHLKQP*ILKCSLVWDSA Trigger: TGCAGAATCCCAAACTAGGCTACATTTCAAAATTCAGGGCTGCTTAAGATGTAAAACCACAATGTTAACAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | CTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGGACCGCGGCTGTGGCTaGCGGGGGCAGCAGCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LWPRPASIQQVAPGIQALDRGCG*RGQQRG Trigger: ACCCCGCTGCTGCCCCCGTCAGCCACAGCCGCGGTC...CAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | GAGTTCAGGACCAGTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTAGACCGCGGCTGTGGCTaGCGGGGGCAGCAGCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: EFRTSLWRQLLPRPAQLLDRGCG*RGQQRG Trigger: ACCCCGCTGCTGCCCCCGTCAGCCACAGCCGCGGTC...TAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGACTGGTCCTGAACTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGACGAGGGGTGGGCACCTaGCGGGTCCTTGGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGRGVGT*RVLGAA Trigger: AGCTGCTCCAAGGACCCGTCAGGTGCCCACCCCTCG...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | CTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGGCTGCATGGCGTGAGTaGAGGACGGGTCGAGCGAGT | + |
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Preference number: 4 (lower is better) Translates to: LWPRPASIQQVAPGIQALAAWRE*RTGRAS Trigger: ACTCGCTCGACCCGTCCTTCACTCACGCCATGCAGC...CAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | AGGCCACCTAGGGGCTCTACAGAAGACGGAAGGCAGGATGGCTGGCACTTGAAGTCTCCGGCTCCATCTTaGCCGCGGCTGTGGCTGACG | + |
|
Preference number: 4 (lower is better) Translates to: RPPRGSTEDGRQDGWHLKSPAPS*PRLWLT Trigger: CGTCAGCCACAGCCGCGGTCAAGATGGAGCCGGAGA...CTTCAAGTGCCAGCCATCCTGCCTTCCGTCTTCTGTAGAGCCCCTAGGTGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR GCA 90 bp | CTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGTGGGGTCTCCACCCTTaGGCAACTCTTCCTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LWPRPASIQQVAPGIQALWGLHP*ATLPPW Trigger: CCAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCA...CAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | GTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTGCATCTCTAGGCAGTGGCACCTCTGGTaGTGGAGCCTCTCACTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VYGASSSPGQLNCYCISRQWHLW*WSLSLG Trigger: CCCCAGTGAGAGGCTCCATCACCAGAGGTGCCACTG...CCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | GCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGTTGACAGCTGGTGGAGGAGCCTTCAGTaGTGGCCTGGTCCCATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: ASLYTAGRSWDPGSVDSWWRSLQ*WPGPIP Trigger: TGGAATGGGACCAGGCCATCACTGAAGGCTCCTCCA...CCAGCTGTCAACAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGACACAGTAGGTGGGGGTaGCACTCCTCGAGTCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGHSRWG*HSSSHS Trigger: ACTGTGACTCGAGGAGTGCCACCCCCACCTACTGTG...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CCA 90 bp | AGGCCACCTAGGGGCTCTACAGAAGACGGAAGGCAGGATGGCTGGCACTTGAAGACCCCTCACAGTAGGTaGGGGTGGCACTCCTCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: RPPRGSTEDGRQDGWHLKTPHSR*GWHSSS Trigger: ACTCGAGGAGTGCCACCCCCACCTACTGTGAGGGGT...CTTCAAGTGCCAGCCATCCTGCCTTCCGTCTTCTGTAGAGCCCCTAGGTGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGACCGAGCTCTTGGTGTTaGAGCACCCCTCACAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGPSSWC*STPHSR Trigger: CCTACTGTGAGGGGTGCTCCAACACCAAGAGCTCGG...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | AGTACAGAGGGGATGCAGAACAGCCCCACCCTTCAAGAACTTGTGGACAAGTGCACCCCTCACAGTAGGTaGGGGTGGCACTCCTCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: STEGMQNSPTLQELVDKCTPHSR*GWHSSS Trigger: ACTCGAGGAGTGCCACCCCCACCTACTGTGAGGGGT...GCACTTGTCCACAAGTTCTTGAAGGGTGGGGCTGTTCTGCATCCCCTCTGTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | CTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGATCTTCGTATGTTTCTaGTGCAGGTGTGGGAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LWPRPASIQQVAPGIQALIFVCF*CRCGRQ Trigger: TTGCCTCCCACACCTGCACCAGAAACATACGAAGAT...CAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGACCTTCAGTGATGGCCTaGTCCCATTCCAGTCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGPSVMA*SHSSHL Trigger: AAGATGACTGGAATGGGACCAGGCCATCACTGAAGG...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR TCA 90 bp | ATCAAGAGGTGGGGTGAAACACAACTGTTGACTCCTCTCCTGGGTTTCTATGGCCAGTGGCACCTCTGGTaGTGGAGCCTCTCACTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: IKRWGETQLLTPLLGFYGQWHLW*WSLSLG Trigger: CCCCAGTGAGAGGCTCCATCACCAGAGGTGCCACTG...GCCATAGAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACCCCACCTCTTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CCA 90 bp | AGTACAGAGGGGATGCAGAACAGCCCCACCCTTCAAGAACTTGTGGACAAGTGCAGCTGTCCGAGCTCTTaGTGTTGGAGCACCCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: STEGMQNSPTLQELVDKCSCPSS*CWSTPH Trigger: GTGAGGGGTGCTCCAACACCAAGAGCTCGGACAGCT...GCACTTGTCCACAAGTTCTTGAAGGGTGGGGCTGTTCTGCATCCCCTCTGTACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR TCA 90 bp | GTATCTGAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTGGTGTCATTCTGCTGCATGGCGTGAGTaGAGGACGGGTCGAGCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: VSEHRWSQCLSTEIWCHSAAWRE*RTGRAS Trigger: ACTCGCTCGACCCGTCCTTCACTCACGCCATGCAGC...AGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTCAGATAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR TCA 90 bp | AGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGGAGAGCAGCTGCATGGCGTaGGTGAAGGACGGGTCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: RTFYGKLSRNKRPGIAQESSCMA*VKDGSS Trigger: GCTCGACCCGTCCTTCACTCACGCCATGCAGCTGCT...CTCCTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGAGTCCAAAGACTTCAATaGAGACATGCAGATCCATAT | + |
|
Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGVQRLQ*RHADPY Trigger: ATATGGATCTGCATGTCTTCATTGAAGTCTTTGGAC...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | ATCAAGAGGTGGGGTGAAACACAACTGTTGACTCCTCTCCTGGGTTTCTATGGCGTATGCTCCCTTCACTaGCCTAGCTGGAGGAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: IKRWGETQLLTPLLGFYGVCSLH*PSWRSL Trigger: AAGGCTCCTCCAGCTAGGCCAGTGAAGGGAGCATAC...GCCATAGAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACCCCACCTCTTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATTAATAACGTCCATATaGATGCTCTCTGTATGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGLITSI*MLSVCS Trigger: GGAGCATACAGAGAGCATCCATATGGACGTTATTAA...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCACGAGGGGTGGGCACCTaGCGGGTCCTTGGAGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: THVAFNLPKTKWEDGTNPRGVGT*RVLGAA Trigger: AGCTGCTCCAAGGACCCGTCAGGTGCCCACCCCTCG...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR GCA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATTCGTAACTCTGTTCTaGGTATGTATCATCATATCC | + |
|
Preference number: 4 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGFVTLF*VCIIIS Trigger: GGATATGATGATACATACGCAGAACAGAGTTACGAA...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR GCA 90 bp | ATCAAGAGGTGGGGTGAAACACAACTGTTGACTCCTCTCCTGGGTTTCTATGGCTGGATGCTCTCTGTATaGTCCCTTCACTGGCCTAGC | + |
|
Preference number: 4 (lower is better) Translates to: IKRWGETQLLTPLLGFYGWMLSV*SLHWPS Trigger: GCTAGGCCAGTGAAGGGAGCATACAGAGAGCATCCA...GCCATAGAAACCCAGGAGAGGAGTCAACAGTTGTGTTTCACCCCACCTCTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR TCA 90 bp | GTCTATGGCGCCAGCTCCTCCCCAGGCCAGCTCAATTGTTACTGCATCTCTAGGTTTGACTCTCCCTTCTaGATCTTCTCAATTTCTACG | + |
|
Preference number: 4 (lower is better) Translates to: VYGASSSPGQLNCYCISRFDSPF*IFSIST Trigger: CGTAGAAATTGAGAAGATTCAGAAGGGAGAGTCAAA...CCTAGAGATGCAGTAACAATTGAGCTGGCCTGGGGAGGAGCTGGCGCCATAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | ACAGGAGCTGAGTGTTCTGACCTGGAGAGCCACACCAGGGATTTAGTCCCTGGTCTTCCTGGAGTCTTTTaGTTGTATTTCCTTGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: TGAECSDLESHTRDLVPGLPGVF*LYFLVV Trigger: GACCACAAGGAAATACAATCAAAAGACTCCAGGAAG...ACCAGGGACTAAATCCCTGGTGTGGCTCTCCAGGTCAGAACACTCAGCTCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | TCTTTTCTGGGAGTCCTCTGGAATGTCCAAGGGCACCCAGGCTATAGGTTCCAATTAAATGGGCATATTTaGGGTCTCCACCCTTGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: SFLGVLWNVQGHPGYRFQLNGHI*GLHPCA Trigger: TGCGCAAGGGTGGAGACCCCAAATATGCCCATTTAA...TTGGAACCTATAGCCTGGGTGCCCTTGGACATTCCAGAGGACTCCCAGAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | TCCAGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGCAACACCACGTCCTCTaGGAACAGGTGGAGGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SRTFYGKLSRNKRPGIAQQHHVL*EQVEEE Trigger: CTCCTCCTCCACCTGTTCCCAGAGGACGTGGTGTTG...CTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | GAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTGGTGTCATTCTTTAAGGCACAGTAGGTGGGGGTaGCACTCCTCGAGTCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: EHRWSQCLSTEIWCHSLRHSRWG*HSSSHS Trigger: ACTGTGACTCGAGGAGTGCCACCCCCACCTACTGTG...CCTTAAAGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | TTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATCTTAAGCAGCAGCTGCATGGCGTaGGTGAAGGACGGGTCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: FYMVALLPLLTLWFYILSSSCMA*VKDGSS Trigger: GCTCGACCCGTCCTTCACTCACGCCATGCAGCTGCT...GCTTAAGATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | ACAGGAGCTGAGTGTTCTGACCTGGAGAGCCACACCAGGGATTTAGTCCCTGGTTCTAGAAACTGCTCCTaGCAGATATCATCCATCATA | + |
|
Preference number: 4 (lower is better) Translates to: TGAECSDLESHTRDLVPGSRNCS*QISSII Trigger: TATGATGGATGATATCTGTCAGGAGCAGTTTCTAGA...ACCAGGGACTAAATCCCTGGTGTGGCTCTCCAGGTCAGAACACTCAGCTCCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR GCA 90 bp | GTGACTTTTTACATAGTGACAACCAATTCCACTGTTTTCAGTCTTGTGGGAGGGTGGGGTCTCCACCCTTaGGCAACTCTTCCTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VTFYIVTTNSTVFSLVGGWGLHP*ATLPPW Trigger: CCAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCA...CCCTCCCACAAGACTGAAAACAGTGGAATTGGTTGTCACTATGTAAAAAGTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR GCA 90 bp | CAGGATGGCTGGCACTTGAAGTACCTATCTGTGTCAGTTGGGTTTTTCTCTCTATGGATGCTCTCTGTATaGTCCCTTCACTGGCCTAGC | + |
|
Preference number: 4 (lower is better) Translates to: QDGWHLKYLSVSVGFFSLWMLSV*SLHWPS Trigger: GCTAGGCCAGTGAAGGGAGCATACAGAGAGCATCCA...TAGAGAGAAAAACCCAACTGACACAGATAGGTACTTCAAGTGCCAGCCATCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CCA 90 bp | AAATGTAGCCTAGTTTGGGATTCTGCAACTATGACTTTACGGGGTGCCTCAAATAGCTGTCCGAGCTCTTaGTGTTGGAGCACCCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: KCSLVWDSATMTLRGASNSCPSS*CWSTPH Trigger: GTGAGGGGTGCTCCAACACCAAGAGCTCGGACAGCT...ATTTGAGGCACCCCGTAAAGTCATAGTTGCAGAATCCCAAACTAGGCTACATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | AGCTCACTTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATTGGAGGAGCCTTCAGTaGTGGCCTGGTCCCATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SSLLHGGTTAVVNIVVLHWRSLQ*WPGPIP Trigger: TGGAATGGGACCAGGCCATCACTGAAGGCTCCTCCA...ATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAAGTGAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CCA 90 bp | TTATATCATGCTAGTGTTGAGACATACTTAACTGCCTTCTACCTTGGGAACAGCCAACACCACGTCCTCTaGGAACAGGTGGAGGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LYHASVETYLTAFYLGNSQHHVL*EQVEEE Trigger: CTCCTCCTCCACCTGTTCCCAGAGGACGTGGTGTTG...GCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTCTCAACACTAGCATGATATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CCA 90 bp | GAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTGGTGTCATTCTTTAAGGCAAAGCTCCTCTAGGTaGTCCAACACCACGTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: EHRWSQCLSTEIWCHSLRQSSSR*SNTTSS Trigger: AGAGGACGTGGTGTTGGACCACCTAGAGGAGCTTTG...CCTTAAAGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CCA 90 bp | TCCAGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGCAAAGCTCCTCTAGGTaGTCCAACACCACGTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SRTFYGKLSRNKRPGIAQQSSSR*SNTTSS Trigger: AGAGGACGTGGTGTTGGACCACCTAGAGGAGCTTTG...CTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CCA 90 bp | GACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGGTCAAGTATGCTCCCTTCACTaGCCTAGCTGGAGGAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: DILNCLLPWEQLKTDNGQVCSLH*PSWRSL Trigger: AAGGCTCCTCCAGCTAGGCCAGTGAAGGGAGCATAC...TTGACCATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | TGCCCATCATGCACTGCTACAGGCAGCTTGGCACTTCACACAAGAGGATTTTTCCTTCCTGGAGTCTTTTaGTTGTATTTCCTTGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: CPSCTATGSLALHTRGFFLPGVF*LYFLVV Trigger: GACCACAAGGAAATACAATCAAAAGACTCCAGGAAG...GAAAAATCCTCTTGTGTGAAGTGCCAAGCTGCCTGTAGCAGTGCATGATGGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR GCA 90 bp | GTATCTGAACACAGGTGGAGTCAATGTCTGAGCACAGAGATTTGGTGTCATTCTTTCGTATGTTTCTGGTaGAGGTGTGGGAGGCAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: VSEHRWSQCLSTEIWCHSFVCFW*RCGRQR Trigger: CCTTTGCCTCCCACACCTGCACCAGAAACATACGAA...AGAATGACACCAAATCTCTGTGCTCAGACATTGACTCCACCTGTGTTCAGATAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCACCGAGCTCTTGGTGTTaGAGCACCCCTCACAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: THVAFNLPKTKWEDGTNPPSSWC*STPHSR Trigger: CCTACTGTGAGGGGTGCTCCAACACCAAGAGCTCGG...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR GCA 90 bp | AGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGGAGCAAGACAGAGATCTTTaGACCAGTCTCTTCCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: RTFYGKLSRNKRPGIAQEQDRDL*TSLFLE Trigger: CTCCAGGAAGAGACTGGTGCAAAGATCTCTGTCTTG...CTCCTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CCA 90 bp | ATTTTGAAATGTAGCCTAGTTTGGGATTCTGCAACTATGACTTTACGGGGTGCCATCTTCGTATGTTTCTaGTGCAGGTGTGGGAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ILKCSLVWDSATMTLRGAIFVCF*CRCGRQ Trigger: TTGCCTCCCACACCTGCACCAGAAACATACGAAGAT...GGCACCCCGTAAAGTCATAGTTGCAGAATCCCAAACTAGGCTACATTTCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | TTATATCATGCTAGTGTTGAGACATACTTAACTGCCTTCTACCTTGGGAACAGCCCTTCAGTGATGGCCTaGTCCCATTCCAGTCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: LYHASVETYLTAFYLGNSPSVMA*SHSSHL Trigger: AAGATGACTGGAATGGGACCAGGCCATCACTGAAGG...GCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTCTCAACACTAGCATGATATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| 3UTR CAA 72 bp | AAGCCTTTATTGAACGCTTCATGCAGAGGCAGATACTaGAAAACTTTAGTACAGAGGGGATGCAGAACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KPLLNASCRGRY*KTLVQRGCRTA Trigger: GGCTGTTCTGCATCCCCTCTGTACTAAAGTTTTCAAGTATCTGCCTCTGCATGAAGCGTTCAATAAAGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR GCA 90 bp | AGCTCACTTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATCAAGACAGAGATCTTTaGACCAGTCTCTTCCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSLLHGGTTAVVNIVVLHQDRDL*TSLFLE Trigger: CTCCAGGAAGAGACTGGTGCAAAGATCTCTGTCTTG...ATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAAGTGAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | ATTTTGAAATGTAGCCTAGTTTGGGATTCTGCAACTATGACTTTACGGGGTGCCGCAACTCTTCCTCCTTaGCTTTGTCTCTCATTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: ILKCSLVWDSATMTLRGAATLPP*LCLSLN Trigger: GTTCAATGAGAGACAAAGCCAAGGAGGAAGAGTTGC...GGCACCCCGTAAAGTCATAGTTGCAGAATCCCAAACTAGGCTACATTTCAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | AACGCTTCATGCAGAGGCAGATACTTGAAAACTTTAGTACAGAGGGGATGCAGAGCACCAGTCTCTTCCTaGAGTCTTTTGATTGTATTT | + |
|
Preference number: 4 (lower is better) Translates to: NASCRGRYLKTLVQRGCRAPVSS*SLLIVF Trigger: AAATACAATCAAAAGACTCCAGGAAGAGACTGGTGC...TCTGCATCCCCTCTGTACTAAAGTTTTCAAGTATCTGCCTCTGCATGAAGCGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CCA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCATTAAATGGGCATATTTaGGGTCTCCACCCTTGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: THVAFNLPKTKWEDGTNPLNGHI*GLHPCA Trigger: TGCGCAAGGGTGGAGACCCCAAATATGCCCATTTAA...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR TCA 90 bp | GACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGGTCAAGTCCAAAGACTTCAATaGAGACATGCAGATCCATAT | + |
|
Preference number: 4 (lower is better) Translates to: DILNCLLPWEQLKTDNGQVQRLQ*RHADPY Trigger: ATATGGATCTGCATGTCTTCATTGAAGTCTTTGGAC...TTGACCATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CCA 90 bp | AAATGTAGCCTAGTTTGGGATTCTGCAACTATGACTTTACGGGGTGCCTCAAATGCACCAGTCTCTTCCTaGAGTCTTTTGATTGTATTT | + |
|
Preference number: 4 (lower is better) Translates to: KCSLVWDSATMTLRGASNAPVSS*SLLIVF Trigger: AAATACAATCAAAAGACTCCAGGAAGAGACTGGTGC...ATTTGAGGCACCCCGTAAAGTCATAGTTGCAGAATCCCAAACTAGGCTACATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | GACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGGTCAATTAATAACGTCCATATaGATGCTCTCTGTATGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: DILNCLLPWEQLKTDNGQLITSI*MLSVCS Trigger: GGAGCATACAGAGAGCATCCATATGGACGTTATTAA...TTGACCATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | TCTGATACCCATTCTATTCCAGGAAATGCCTCAGGAATTTTCAGTCACTTGTCTTTTGACTCTCCCTTCTaGATCTTCTCAATTTCTACG | + |
|
Preference number: 4 (lower is better) Translates to: SDTHSIPGNASGIFSHLSFDSPF*IFSIST Trigger: CGTAGAAATTGAGAAGATTCAGAAGGGAGAGTCAAA...AGACAAGTGACTGAAAATTCCTGAGGCATTTCCTGGAATAGAATGGGTATCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR GCA 90 bp | ATTTTGAAATGTAGCCTAGTTTGGGATTCTGCAACTATGACTTTACGGGGTGCCTTCGTAACTCTGTTCTaGGTATGTATCATCATATCC | + |
|
Preference number: 4 (lower is better) Translates to: ILKCSLVWDSATMTLRGAFVTLF*VCIIIS Trigger: GGATATGATGATACATACGCAGAACAGAGTTACGAA...GGCACCCCGTAAAGTCATAGTTGCAGAATCCCAAACTAGGCTACATTTCAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR TCA 90 bp | TTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATCTTAAGCTCTAGAAACTGCTCCTaGCAGATATCATCCATCATA | + |
|
Preference number: 4 (lower is better) Translates to: FYMVALLPLLTLWFYILSSRNCS*QISSII Trigger: TATGATGGATGATATCTGTCAGGAGCAGTTTCTAGA...GCTTAAGATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | GACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGGTCAACACAAAATTGAACTTTaGATACTGCTTGACAGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: DILNCLLPWEQLKTDNGQHKIEL*ILLDRY Trigger: ATACCTGTCAAGCAGTATCCAAAGTTCAATTTTGTG...TTGACCATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
||
| CDS-3UTR CCA 90 bp | TCTGATACCCATTCTATTCCAGGAAATGCCTCAGGAATTTTCAGTCACTTGTCTCACAAAATTGAACTTTaGATACTGCTTGACAGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: SDTHSIPGNASGIFSHLSHKIEL*ILLDRY Trigger: ATACCTGTCAAGCAGTATCCAAAGTTCAATTTTGTG...AGACAAGTGACTGAAAATTCCTGAGGCATTTCCTGGAATAGAATGGGTATCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS TCA 90 bp | CGGCGACGGCCGAGACGGGGTCAGACGCACCGAGGGGTGGGCACCTaGCGGGTCCTTGGAGCAGCTGCGGCCCGAGGACCGGGTGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: RRRPRRGQTHRGVGT*RVLGAAAARGPGEA Trigger: CGCCTCACCCGGTCCTCGGGCCGCAGCTGCTCCAAGGACCCGTCAGGTGCCCACCCCTCGGTGCGTCTGACCCCGTCTCGGCCGTCGCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS TCA 90 bp | AGGCAGGTACTTATTCTCCGGCTCCATCTTGACCGCGGCTGTGGCTaGCGGGGGCAGCAGCGGGGTCGGCGCGGAACCCACCACCGTCGC | + |
|
Preference number: 5 (lower is better) Translates to: RQVLILRLHLDRGCG*RGQQRGRRGTHHRR Trigger: GCGACGGTGGTGGGTTCCGCGCCGACCCCGCTGCTGCCCCCGTCAGCCACAGCCGCGGTCAAGATGGAGCCGGAGAATAAGTACCTGCCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | CTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGAGCACCTGACGGGTCCTaGGAGCAGCTGCGGCCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: LLGFYGPGQPLYSRSLLGAPDGS*EQLRPE Trigger: CTCGGGCCGCAGCTGCTCCAAGGACCCGTCAGGTGC...TCCCAGGAGCGACCTGCTGTATAGAGGCTGGCCTGGGCCATAGAAACCCAGGAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS CCA 90 bp | CCCAGCTGTCCGAGCTCTTGGTGTTGGAGCACCCCTCACAGTAGGTaGGGGTGGCACTCCTCGAGTCACAGTGGCACCTCTGGTGATGGA | + |
|
Preference number: 5 (lower is better) Translates to: PSCPSSWCWSTPHSR*GWHSSSHSGTSGDG Trigger: TCCATCACCAGAGGTGCCACTGTGACTCGAGGAGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAACACCAAGAGCTCGGACAGCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS CCA 90 bp | TGTCCGAGCTCTTGGTGTTGGAGCACCCCTCACAGTAGGTGGGGGTaGCACTCCTCGAGTCACAGTGGCACCTCTGGTGATGGAGCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: CPSSWCWSTPHSRWG*HSSSHSGTSGDGAS Trigger: AGAGGCTCCATCACCAGAGGTGCCACTGTGACTCGAGGAGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAACACCAAGAGCTCGGACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS-3UTR CAA 90 bp | GCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCTGTTGACAGCTGGTTGGGGTCTCCACCCTaGCGCAACTCTTCCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: ASLYTAGRSWDPGSVDSWLGSPP*RNSSSL Trigger: CAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCAA...CCAGCTGTCAACAGAGCCTGGATCCCAGGAGCGACCTGCTGTATAGAGGCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS CCA 90 bp | CACTCCTCGAGTCACAGTGGCACCTCTGGTGATGGAGCCTCTCACTaGGGTTCCACGAACCAAAGCTCCTCTAGGTGGTCCAACACCACG | + |
|
Preference number: 5 (lower is better) Translates to: HSSSHSGTSGDGASH*GSTNQSSSRWSNTT Trigger: CGTGGTGTTGGACCACCTAGAGGAGCTTTGGTTCGTGGAACCCCAGTGAGAGGCTCCATCACCAGAGGTGCCACTGTGACTCGAGGAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS-3UTR CAA 90 bp | TCTTTTCTGGGAGTCCTCTGGAATGTCCAAGGGCACCCAGGCTATAGGTTCCAATTCTCCGGCTCCATCTaGACCGCGGCTGTGGCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: SFLGVLWNVQGHPGYRFQFSGSI*TAAVAD Trigger: GTCAGCCACAGCCGCGGTCAAGATGGAGCCGGAGAA...TTGGAACCTATAGCCTGGGTGCCCTTGGACATTCCAGAGGACTCCCAGAAAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS TCA 90 bp | CTCTCTGTATGCTCCCTTCACTGGCCTAGCTGGAGGAGCCTTCAGTaGTGGCCTGGTCCCATTCCAGTCATCTTGTCCGTAGGCTTCGTA | + |
|
Preference number: 5 (lower is better) Translates to: LSVCSLHWPSWRSLQ*WPGPIPVILSVGFV Trigger: TACGAAGCCTACGGACAAGATGACTGGAATGGGACCAGGCCATCACTGAAGGCTCCTCCAGCTAGGCCAGTGAAGGGAGCATACAGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | AGGCCACCTAGGGGCTCTACAGAAGACGGAAGGCAGGATGGCTGGCACTTGAAGTTTAAATGGGCATATTaGGGGTCTCCACCCTTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: RPPRGSTEDGRQDGWHLKFKWAY*GSPPLR Trigger: GCGCAAGGGTGGAGACCCCAAATATGCCCATTTAAA...CTTCAAGTGCCAGCCATCCTGCCTTCCGTCTTCTGTAGAGCCCCTAGGTGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | TCTTTTCTGGGAGTCCTCTGGAATGTCCAAGGGCACCCAGGCTATAGGTTCCAACAGCTGTCCGAGCTCTaGGTGTTGGAGCACCCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SFLGVLWNVQGHPGYRFQQLSEL*VLEHPS Trigger: TGAGGGGTGCTCCAACACCAAGAGCTCGGACAGCTG...TTGGAACCTATAGCCTGGGTGCCCTTGGACATTCCAGAGGACTCCCAGAAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
||
| CDS-3UTR CAA 90 bp | GTGACTTTTTACATAGTGACAACCAATTCCACTGTTTTCAGTCTTGTGGGAGGGGCACCTGACGGGTCCTaGGAGCAGCTGCGGCCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: VTFYIVTTNSTVFSLVGGAPDGS*EQLRPE Trigger: CTCGGGCCGCAGCTGCTCCAAGGACCCGTCAGGTGC...CCCTCCCACAAGACTGAAAACAGTGGAATTGGTTGTCACTATGTAAAAAGTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | AGTACAGAGGGGATGCAGAACAGCCCCACCCTTCAAGAACTTGTGGACAAGTGCTTTAAATGGGCATATTaGGGGTCTCCACCCTTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: STEGMQNSPTLQELVDKCFKWAY*GSPPLR Trigger: GCGCAAGGGTGGAGACCCCAAATATGCCCATTTAAA...GCACTTGTCCACAAGTTCTTGAAGGGTGGGGCTGTTCTGCATCCCCTCTGTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | GACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGGTCAATTCTCCGGCTCCATCTaGACCGCGGCTGTGGCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: DILNCLLPWEQLKTDNGQFSGSI*TAAVAD Trigger: GTCAGCCACAGCCGCGGTCAAGATGGAGCCGGAGAA...TTGACCATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | AGTACAGAGGGGATGCAGAACAGCCCCACCCTTCAAGAACTTGTGGACAAGTGCTCTTCCTCCTTGGCTTaGTCTCTCATTGAACCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: STEGMQNSPTLQELVDKCSSSLA*SLIEPF Trigger: GAAGGGTTCAATGAGAGACAAAGCCAAGGAGGAAGA...GCACTTGTCCACAAGTTCTTGAAGGGTGGGGCTGTTCTGCATCCCCTCTGTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCACAGCTGTCCGAGCTCTaGGTGTTGGAGCACCCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: THVAFNLPKTKWEDGTNPQLSEL*VLEHPS Trigger: TGAGGGGTGCTCCAACACCAAGAGCTCGGACAGCTG...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | CAGGATGGCTGGCACTTGAAGTACCTATCTGTGTCAGTTGGGTTTTTCTCTCTACGCAACTCTTCCTCCTaGGCTTTGTCTCTCATTGAA | + |
|
Preference number: 5 (lower is better) Translates to: QDGWHLKYLSVSVGFFSLRNSSS*ALSLIE Trigger: TTCAATGAGAGACAAAGCCAAGGAGGAAGAGTTGCG...TAGAGAGAAAAACCCAACTGACACAGATAGGTACTTCAAGTGCCAGCCATCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | ACACATGTAGCATTTAATCTTCCGAAAACAAAATGGGAGGACGGTACAAATCCATTGGGGTCTCCACCCTaGCGCAACTCTTCCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: THVAFNLPKTKWEDGTNPLGSPP*RNSSSL Trigger: CAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCAA...TGGATTTGTACCGTCCTCCCATTTTGTTTTCGGAAGATTAAATGCTACATGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | AGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGGAGGGCTTCGTAAGAATCTaGGAGCTCCCCATGTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: RTFYGKLSRNKRPGIAQEGFVRI*ELPMSI Trigger: TATGGACATGGGGAGCTCCAAGATTCTTACGAAGCC...CTCCTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | GTTGAGACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGTCTTCCTCCTTGGCTTaGTCTCTCATTGAACCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VETYLTAFYLGNSSKLTMSSSLA*SLIEPF Trigger: GAAGGGTTCAATGAGAGACAAAGCCAAGGAGGAAGA...CATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTCTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | TCTGATACCCATTCTATTCCAGGAAATGCCTCAGGAATTTTCAGTCACTTGTCTCGCAACTCTTCCTCCTaGGCTTTGTCTCTCATTGAA | + |
|
Preference number: 5 (lower is better) Translates to: SDTHSIPGNASGIFSHLSRNSSS*ALSLIE Trigger: TTCAATGAGAGACAAAGCCAAGGAGGAAGAGTTGCG...AGACAAGTGACTGAAAATTCCTGAGGCATTTCCTGGAATAGAATGGGTATCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | TTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATCTTAAGCGGCTTCGTAAGAATCTaGGAGCTCCCCATGTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: FYMVALLPLLTLWFYILSGFVRI*ELPMSI Trigger: TATGGACATGGGGAGCTCCAAGATTCTTACGAAGCC...GCTTAAGATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | TCCAGAACATTCTATGGGAAACTAAGCAGAAACAAGAGACCGGGAATAGCACAGTCTTCCTGGAGTCTTTaGATTGTATTTCCTTGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: SRTFYGKLSRNKRPGIAQSSWSL*IVFPCG Trigger: ACCACAAGGAAATACAATCAAAAGACTCCAGGAAGA...CTGTGCTATTCCCGGTCTCTTGTTTCTGCTTAGTTTCCCATAGAATGTTCTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129342.8 |
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| CDS-3UTR CAA 90 bp | GTTGAGACATACTTAACTGCCTTCTACCTTGGGAACAGCTCAAAACTGACAATGTCTTCCTGGAGTCTTTaGATTGTATTTCCTTGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: VETYLTAFYLGNSSKLTMSSWSL*IVFPCG Trigger: ACCACAAGGAAATACAATCAAAAGACTCCAGGAAGA...CATTGTCAGTTTTGAGCTGTTCCCAAGGTAGAAGGCAGTTAAGTATGTCTCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS-3UTR CAA 90 bp | TTTTACATGGTGGCACTACTGCCGTTGTTAACATTGTGGTTTTACATCTTAAGCTTTGATTGTATTTCCTaGTGGTCCAAGAATCTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: FYMVALLPLLTLWFYILSFDCIS*WSKNLP Trigger: GGGAAGATTCTTGGACCACAAGGAAATACAATCAAA...GCTTAAGATGTAAAACCACAATGTTAACAACGGCAGTAGTGCCACCATGTAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066257.6 |
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| CDS TCA 72 bp | CCGAGACGGGGTCAGACGCACCGAGGGGTGGGCACCTaGCGGGTCCTTGGAGCAGCTGCGGCCCGAGGACCG | + |
|
Preference number: 6 (lower is better) Translates to: PRRGQTHRGVGT*RVLGAAAARGP Trigger: CGGTCCTCGGGCCGCAGCTGCTCCAAGGACCCGTCAGGTGCCCACCCCTCGGTGCGTCTGACCCCGTCTCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS CAA 72 bp | GTCAGACGCACCGAGGGGTGGGCACCTGACGGGTCCTaGGAGCAGCTGCGGCCCGAGGACCGGGTGAGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: VRRTEGWAPDGS*EQLRPEDRVRR Trigger: GCGCCTCACCCGGTCCTCGGGCCGCAGCTGCTCCAAGGACCCGTCAGGTGCCCACCCCTCGGTGCGTCTGAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS TCA 72 bp | CTTATTCTCCGGCTCCATCTTGACCGCGGCTGTGGCTaGCGGGGGCAGCAGCGGGGTCGGCGCGGAACCCAC | + |
|
Preference number: 6 (lower is better) Translates to: LILRLHLDRGCG*RGQQRGRRGTH Trigger: GTGGGTTCCGCGCCGACCCCGCTGCTGCCCCCGTCAGCCACAGCCGCGGTCAAGATGGAGCCGGAGAATAAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CAA 72 bp | ATGAGTTCAGGCAGGTACTTATTCTCCGGCTCCATCTaGACCGCGGCTGTGGCTGACGGGGGCAGCAGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: MSSGRYLFSGSI*TAAVADGGSSG Trigger: CCCGCTGCTGCCCCCGTCAGCCACAGCCGCGGTCAAGATGGAGCCGGAGAATAAGTACCTGCCTGAACTCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS TCA 72 bp | GGGGTGGCACTCCTCGAGTCACAGTGGCACCTCTGGTaGTGGAGCCTCTCACTGGGGTTCCACGAACCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: GVALLESQWHLW*WSLSLGFHEPK Trigger: CTTTGGTTCGTGGAACCCCAGTGAGAGGCTCCATCACCAGAGGTGCCACTGTGACTCGAGGAGTGCCACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CCA 72 bp | TCTTGGTGTTGGAGCACCCCTCACAGTAGGTGGGGGTaGCACTCCTCGAGTCACAGTGGCACCTCTGGTGAT | + |
|
Preference number: 6 (lower is better) Translates to: SWCWSTPHSRWG*HSSSHSGTSGD Trigger: ATCACCAGAGGTGCCACTGTGACTCGAGGAGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAACACCAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CCA 72 bp | AGTCACAGTGGCACCTCTGGTGATGGAGCCTCTCACTaGGGTTCCACGAACCAAAGCTCCTCTAGGTGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: SHSGTSGDGASH*GSTNQSSSRWS Trigger: GGACCACCTAGAGGAGCTTTGGTTCGTGGAACCCCAGTGAGAGGCTCCATCACCAGAGGTGCCACTGTGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CCA 72 bp | TATTCTCTGAATCCCAGCTGTCCGAGCTCTTGGTGTTaGAGCACCCCTCACAGTAGGTGGGGGTGGCACTCC | + |
|
Preference number: 6 (lower is better) Translates to: YSLNPSCPSSWC*STPHSRWGWHS Trigger: GGAGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAACACCAAGAGCTCGGACAGCTGGGATTCAGAGAATA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS TCA 72 bp | TGCTCCCTTCACTGGCCTAGCTGGAGGAGCCTTCAGTaGTGGCCTGGTCCCATTCCAGTCATCTTGTCCGTA | + |
|
Preference number: 6 (lower is better) Translates to: CSLHWPSWRSLQ*WPGPIPVILSV Trigger: TACGGACAAGATGACTGGAATGGGACCAGGCCATCACTGAAGGCTCCTCCAGCTAGGCCAGTGAAGGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS GCA 72 bp | CCATATTTAAATGGGCATATTTGGGGTCTCCACCCTTaGGCAACTCTTCCTCCTTGGCTTTGTCTCTCATTG | + |
|
Preference number: 6 (lower is better) Translates to: PYLNGHIWGLHP*ATLPPWLCLSL Trigger: CAATGAGAGACAAAGCCAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCAAATATGCCCATTTAAATATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CAA 72 bp | TCCATATTTAAATGGGCATATTTGGGGTCTCCACCCTaGCGCAACTCTTCCTCCTTGGCTTTGTCTCTCATT | + |
|
Preference number: 6 (lower is better) Translates to: SIFKWAYLGSPP*RNSSSLALSLI Trigger: AATGAGAGACAAAGCCAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCAAATATGCCCATTTAAATATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CAA 72 bp | ATGAAGACATGCAGATCCATATTTAAATGGGCATATTaGGGGTCTCCACCCTTGCGCAACTCTTCCTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: MKTCRSIFKWAY*GSPPLRNSSSL Trigger: CAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCAAATATGCCCATTTAAATATGGATCTGCATGTCTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
||
| CDS CAA 90 bp | AAGACTTCAATGAAGACATGCAGATCCATATTTAAATGGGCATATTaGGGGTCTCCACCCTTGCGCAACTCTTCCTCCTTGGCTTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: KTSMKTCRSIFKWAY*GSPPLRNSSSLALS Trigger: AGACAAAGCCAAGGAGGAAGAGTTGCGCAAGGGTGGAGACCCCAAATATGCCCATTTAAATATGGATCTGCATGTCTTCATTGAAGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS TCA 72 bp | CAGAGATCTTTGCACCAGTCTCTTCCTGGAGTCTTTTaGTTGTATTTCCTTGTGGTCCAAGAATCTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: QRSLHQSLPGVF*LYFLVVQESSP Trigger: TGGGGAAGATTCTTGGACCACAAGGAAATACAATCAAAAGACTCCAGGAAGAGACTGGTGCAAAGATCTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS GCA 72 bp | TGTATCATCATATCCATAATCTTCGTATGTTTCTGGTaGAGGTGTGGGAGGCAAAGGTATTCTCTGAATCCC | + |
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Preference number: 6 (lower is better) Translates to: CIIISIIFVCFW*RCGRQRYSLNP Trigger: GGGATTCAGAGAATACCTTTGCCTCCCACACCTGCACCAGAAACATACGAAGATTATGGATATGATGATACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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| CDS CCA 72 bp | GTATGTATCATCATATCCATAATCTTCGTATGTTTCTaGTGCAGGTGTGGGAGGCAAAGGTATTCTCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: VCIIISIIFVCF*CRCGRQRYSLN Trigger: ATTCAGAGAATACCTTTGCCTCCCACACCTGCACCAGAAACATACGAAGATTATGGATATGATGATACATAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066257.6 ENSMUST00000129342.8 |
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