RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KHDC4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028060

Ensembl transcript IDs: ENSMUST00000029696.11, ENSMUST00000198042.5, ENSMUST00000198078.2, ENSMUST00000199684.5

Found 325 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTTTATCAACTAGAGGCACGGAATACAGCGAGCCCATGCACAGGATaGAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCAGCTCCCAAC +
Preference number: 1 (lower is better)
Translates to: FYQLEARNTASPCTG*RVQGCCGVMSSAPN
Trigger: GTTGGGAGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCTCGCTGTATTCCGTGCCTCTAGTTGATAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR GCA 90 bp TCTGTTCACTTTTATCAACTAGAGGCACGGAATACAGCGAGCCCATaGACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCA +
Preference number: 1 (lower is better)
Translates to: SVHFYQLEARNTASP*TGCRVQGCCGVMSS
Trigger: TGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCTCGCTGTATTCCGTGCCTCTAGTTGATAAAAGTGAACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR CCA 90 bp ACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAATaGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCA +
Preference number: 1 (lower is better)
Translates to: TQLETGSLEGQCQQQ*LSETSVPKGASFGS
Trigger: TGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR CCA 90 bp GAATACAGCGAGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTaGGGTGATGAGCTCAGCTCCCAACACATAGGAAAAGTAACTTTT +
Preference number: 1 (lower is better)
Translates to: EYSEPMHRMQSAGML*GDELSSQHIGKVTF
Trigger: AAAAGTTACTTTTCCTATGTGTTGGGAGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCTCGCTGTATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR CCA 90 bp TATGACAGGGGACACTGTGTCCCTAACATCTTCGAAGATCCAAGATaGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCATG +
Preference number: 1 (lower is better)
Translates to: YDRGHCVPNIFEDPR*PPEQVPESCLIKCM
Trigger: CATGCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAGGGACACAGTGTCCCCTGTCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR CCA 90 bp ATCAGGTCAAACATATGTAGCAATGACTCTGTCCTGGTATCTCACTaGACAAGCACATTTCATCAACTGTTAAAAAGCTTGATGCAAATT +
Preference number: 1 (lower is better)
Translates to: IRSNICSNDSVLVSH*TSTFHQLLKSLMQI
Trigger: AATTTGCATCAAGCTTTTTAACAGTTGATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGTTTGACCTGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp AGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCAGCTCTCTCGCTCTTTGCCTaGGGAACTTGCCGGCTTCGA +
Preference number: 2 (lower is better)
Translates to: SPCTGCRVQGCCGVMSSALSLFA*GTCRLR
Trigger: TCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAG...AGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTTTCGAAGATCCAAGATaGCCCCCAGAACAGGTCCCA +
Preference number: 2 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASFEDPR*PPEQVP
Trigger: TGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCCCTCTCTCGCTCTTTaGCTGAGGAACTTGCCGGCT +
Preference number: 2 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPPSLAL*LRNLPA
Trigger: AGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGG...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp TATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGGGTGGAGGCATCAACTaGCTGTCCCTCTCTCGCTCT +
Preference number: 2 (lower is better)
Translates to: YSSHWKGWWRHQLPVPLSGGGIN*LSLSRS
Trigger: AGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACC...CGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp CTACTTGTCATCCCACCCCCAGCTGCACTGTACTCACCATGGCTTCCGGCTAAGCACTGGAAAGGCTGGTaGAGGCATCAACTGCCTGTC +
Preference number: 2 (lower is better)
Translates to: LLVIPPPAALYSPWLPAKHWKGW*RHQLPV
Trigger: GACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTG...CTTAGCCGGAAGCCATGGTGAGTACAGTGCAGCTGGGGGTGGGATGACAAGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp TATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCACTGGAAAGGCTGGTaGAGGCATCAACTGCCTGTC +
Preference number: 2 (lower is better)
Translates to: YSSHWKGWWRHQLPVPLSHWKGW*RHQLPV
Trigger: GACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTG...CGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp AGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCAGCTGCAATGACTCTGTCCTaGTATCTCACTGGACAAGCA +
Preference number: 2 (lower is better)
Translates to: SPCTGCRVQGCCGVMSSAAMTLS*YLTGQA
Trigger: TGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGC...AGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTAGTCACTGGAAAGGCTaGTGGAGGCATCAACTGCCT +
Preference number: 2 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPSHWKG*WRHQLP
Trigger: AGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACT...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGCTCTCGCTCTTTGCCTaGGGAACTTGCCGGCTTCGA +
Preference number: 2 (lower is better)
Translates to: LRETDECFAFSLTQLETGLSLFA*GTCRLR
Trigger: TCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAG...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGCCCTCTCTCGCTCTTTaGCTGAGGAACTTGCCGGCT +
Preference number: 2 (lower is better)
Translates to: LRETDECFAFSLTQLETGPSLAL*LRNLPA
Trigger: AGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGG...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTCCCTCTCTCGCTCTTTaGCTGAGGAACTTGCCGGCT +
Preference number: 2 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVPSLAL*LRNLPA
Trigger: AGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGG...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGGGTGGAGGCATCAACTaGCTGTCCCTCTCTCGCTCT +
Preference number: 2 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVGGGIN*LSLSRS
Trigger: AGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACC...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTACTCTCGCTCTTTGCCTaGGGAACTTGCCGGCTTCGA +
Preference number: 2 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLLSLFA*GTCRLR
Trigger: TCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAG...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCACTGGAAAGGCTGGTaGAGGCATCAACTGCCTGTC +
Preference number: 2 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVHWKGW*RHQLPV
Trigger: GACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTG...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAATTCGAAGATCCAAGATaGCCCCCAGAACAGGTCCCA +
Preference number: 2 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQFEDPR*PPEQVP
Trigger: TGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR CAA 90 bp GTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTaGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAATGGCTA +
Preference number: 2 (lower is better)
Translates to: VLRETDECFAFSLTQ*ETGSLEGQCQQQWL
Trigger: TAGCCATTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTAAGAAGAGTCACTaGGGGTCAAAGCTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPAKKSH*GSKLCP
Trigger: TGGACAGAGCTTTGACCCTCAGTGACTCTTCTTAGC...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp TTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCAAATGGAAAGAGGGATaGGGAGCTCTTAGAATTACA +
Preference number: 2 (lower is better)
Translates to: LQFQSVTVLSVAPHPSSRKWKEG*GALRIT
Trigger: TGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTT...GCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTCGCTGCAGCCAGTTCTaGGAGAGACAGATGAGTGTT +
Preference number: 2 (lower is better)
Translates to: QCQQQWLSETSVPKGASFRCSQF*ERQMSV
Trigger: AACACTCATCTGTCTCTCTCAGAACTGGCTGCAGCG...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTGAATGCAAAAATAACTaGATTTTCCTGTTCAGGATC +
Preference number: 2 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASECKNN*IFLFRI
Trigger: GATCCTGAACAGGAAAATGCAGTTATTTTTGCATTC...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGAGTCACTGGAAAGGCTaGTGGAGGCATCAACTGCCT +
Preference number: 2 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKSHWKG*WRHQLP
Trigger: AGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACT...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGGGGCCATCCAAAATaGCATCTGCTGCTTAGCTCG +
Preference number: 2 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKWGHPK*HLLLSS
Trigger: CGAGCTAAGCAGCAGATGCCATTTTGGATGGCCCCA...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTGTCCACTATTTTCTATaGGGCCATCCAAAATGGCAT +
Preference number: 2 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPVHYFL*GHPKWH
Trigger: ATGCCATTTTGGATGGCCCCATAGAAAATAGTGGAC...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATGCTAAGAAGAGTCACTaGGGGTCAAAGCTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNAKKSH*GSKLCP
Trigger: TGGACAGAGCTTTGACCCTCAGTGACTCTTCTTAGC...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCCCTTCTATCTCATTCTaGCTGGAGAAGCCTGTACCT +
Preference number: 2 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCPSISF*LEKPVP
Trigger: AGGTACAGGCTTCTCCAGTCAGAATGAGATAGAAGG...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
3UTR-3UTR GCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCATCCAAAATGGCATCTaGTGCTTAGCTCGTGGCTGT +
Preference number: 2 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCIQNGI*CLARGC
Trigger: ACAGCCACGAGCTAAGCAGCAGATGCCATTTTGGAT...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAATCCAAAATGGCATCTaGTGCTTAGCTCGTGGCTGT +
Preference number: 2 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPIQNGI*CLARGC
Trigger: ACAGCCACGAGCTAAGCAGCAGATGCCATTTTGGAT...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCAAAATGGCATCTGCTaGTTAGCTCGTGGCTGTGAT +
Preference number: 2 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKQNGIC*LARGCD
Trigger: ATCACAGCCACGAGCTAAGCAGCAGATGCCATTTTG...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCTTTTATTCCAGTCACTaGAAAGGCTGGTGGAGGCAT +
Preference number: 2 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSFYSSH*KGWWRH
Trigger: ATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAA...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAAGGTGGAGGCATCAACTaGCTGTCCCTCTCTCGCTCT +
Preference number: 2 (lower is better)
Translates to: RDEELLELHVSMEGRVLKGGGIN*LSLSRS
Trigger: AGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACC...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCTTCGAAGATCCAAGATaGCCCCCAGAACAGGTCCCA +
Preference number: 2 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFIFEDPR*PPEQVP
Trigger: TGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAGTGCCAACAGCAATaGCTATCTGAAACAAGTGTG +
Preference number: 2 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNQCQQQ*LSETSV
Trigger: CACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp AGGGTCAATGGTCACCCCATAACGTTGATGATATCACGAAAAACAGCCAGCACCCAGTGCCAACAGCAATaGCTATCTGAAACAAGTGTG +
Preference number: 2 (lower is better)
Translates to: RVNGHPITLMISRKTASTQCQQQ*LSETSV
Trigger: CACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG...GGTGCTGGCTGTTTTTCGTGATATCATCAACGTTATGGGGTGACCATTGACCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATTTTTATTCCAGTCACTaGAAAGGCTGGTGGAGGCAT +
Preference number: 2 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNFYSSH*KGWWRH
Trigger: ATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAA...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp GGGATGCTGTGGGGTGATGAGCTCAGCTCCCAACACATAGGAAAAGTAACTTTTTTTTATTCCAGTCACTaGAAAGGCTGGTGGAGGCAT +
Preference number: 2 (lower is better)
Translates to: GMLWGDELSSQHIGKVTFFYSSH*KGWWRH
Trigger: ATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAA...AAAAGTTACTTTTCCTATGTGTTGGGAGCTGAGCTCATCACCCCACAGCATCCC
47% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTATTTCATCTTCTTGGCTaGATAATCATGGCTTCCGGC +
Preference number: 2 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLFHLLG*IIMASG
Trigger: GCCGGAAGCCATGATTATCCAGCCAAGAAGATGAAA...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
3UTR-3UTR CCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCCGTTTTCATCTTCTTaGCTGGATAATCATGGCTTC +
Preference number: 2 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVPFSSS*LDNHGF
Trigger: GAAGCCATGATTATCCAGCCAAGAAGATGAAAACGG...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
3UTR-3UTR CCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCGTCCACTATTTTCTATaGGGCCATCCAAAATGGCAT +
Preference number: 2 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCVHYFL*GHPKWH
Trigger: ATGCCATTTTGGATGGCCCCATAGAAAATAGTGGAC...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAGCTAAGAAGAGTCACTaGGGGTCAAAGCTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: PNGKRDEELLELHVSMEGAKKSH*GSKLCP
Trigger: TGGACAGAGCTTTGACCCTCAGTGACTCTTCTTAGC...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCTACTTGCATTTTTATaGCCTCCATGTTCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNLLAFL*PPCSSS
Trigger: AGAGGAAGAACATGGAGGTCATAAAAATGCAAGTAG...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp ATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCCTACTTGCATTTTTATaGCCTCCATGTTCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: IFEDPRWPPEQVPESCLILLAFL*PPCSSS
Trigger: AGAGGAAGAACATGGAGGTCATAAAAATGCAAGTAG...GATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCTGTGGAAAGCTACTTaGATTTTTATGACCTCCATG +
Preference number: 2 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKLWKAT*IFMTSM
Trigger: CATGGAGGTCATAAAAATGCAAGTAGCTTTCCACAG...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCTGTGGAAAGCTACTTaGATTTTTATGACCTCCATG +
Preference number: 2 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNLWKAT*IFMTSM
Trigger: CATGGAGGTCATAAAAATGCAAGTAGCTTTCCACAG...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTCAAAATGGCATCTGCTaGTTAGCTCGTGGCTGTGAT +
Preference number: 2 (lower is better)
Translates to: SKMCKNDSISDAPGSPPIQNGIC*LARGCD
Trigger: ATCACAGCCACGAGCTAAGCAGCAGATGCCATTTTG...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp GATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACCAAATACAGCGAGCCCATaGACAGGATGCAGAGTGCAG +
Preference number: 2 (lower is better)
Translates to: DEELLELHVSMEGRVLKPNTASP*TGCRVQ
Trigger: CTGCACTCTGCATCCTGTGCATGGGCTCGCTGTATT...TGGTTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACATCACCGTCCTGTCGGTaGCACCACATCCCTCTTCTC +
Preference number: 2 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTSPSCR*HHIPLL
Trigger: GAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGA...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp CTGCAGCCAGTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGATTCCTGACACAGAATaGCTAAAAACGGAAAGCTAT +
Preference number: 2 (lower is better)
Translates to: LQPVLRETDECFAFSLTQIPDTE*LKTESY
Trigger: ATAGCTTTCCGTTTTTAGCCATTCTGTGTCAGGAAT...CTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAACTGGCTGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR CAA 90 bp CCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCATGCATTATaGCTAAGAAGAGTCACTGAGGGTCAAAGCTCTGTCCACTATTTT +
Preference number: 2 (lower is better)
Translates to: PRTGPRVLFNQVHAL*LRRVTEGQSSVHYF
Trigger: AAAATAGTGGACAGAGCTTTGACCCTCAGTGACTCTTCTTAGCAATAATGCATGCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR TCA 90 bp GATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACCAGCTAAGAAGAGTCACTaGGGGTCAAAGCTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: DEELLELHVSMEGRVLKPAKKSH*GSKLCP
Trigger: TGGACAGAGCTTTGACCCTCAGTGACTCTTCTTAGC...TGGTTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR GCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGATATCTGAAACAAGTGTaGCTAAAGGTGCCAGCTTTG +
Preference number: 2 (lower is better)
Translates to: PNGKRDEELLELHVSMEGYLKQV*LKVPAL
Trigger: CAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATA...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACAGCAATGACTCTGTCCTaGTATCTCACTGGACAAGCA +
Preference number: 2 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTAMTLS*YLTGQA
Trigger: TGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGC...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR CCA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACAGAAATTGGATTAATCTaGTTGACCACCGGGATAGAA +
Preference number: 2 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTEIGLI*LTTGIE
Trigger: TTCTATCCCGGTGGTCAACCAGATTAATCCAATTTC...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp AGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCAGCTCTTTGCCTGAGGAACTaGCCGGCTTCGATCCTGCGC +
Preference number: 3 (lower is better)
Translates to: SPCTGCRVQGCCGVMSSALCLRN*PASILR
Trigger: GCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAG...AGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
3UTR GCA 72 bp GTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTaGCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTT +
Preference number: 3 (lower is better)
Translates to: VEASTACPSLAL*LRNLPASILRL
Trigger: AAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCCTTTGCCTGAGGAACTaGCCGGCTTCGATCCTGCGC +
Preference number: 3 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRLCLRN*PASILR
Trigger: GCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAG...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR CCA 72 bp ACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTaGCACCACATCCCTCTTCTCGCTGCAGCCAGTTCT +
Preference number: 3 (lower is better)
Translates to: TSCNSSQSPSCR*HHIPLLAAASS
Trigger: AGAACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCTCCCTCTCTCGCTCTTaGCCTGAGGAACTTGCCGGC +
Preference number: 3 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSSLSRS*PEELAG
Trigger: GCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGGA...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR CCA 72 bp GAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAATaGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGC +
Preference number: 3 (lower is better)
Translates to: ETGSLEGQCQQQ*LSETSVPKGAS
Trigger: GCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp TCCCTCTCTCGCTCTTTGCCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTTCTCAAGTGCATGCATTATaGCTAAGAAGAGTCACTGAG +
Preference number: 3 (lower is better)
Translates to: SLSRSLPEELAGFDPAPSQVHAL*LRRVTE
Trigger: CTCAGTGACTCTTCTTAGCAATAATGCATGCACTTG...AGAAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
3UTR CCA 72 bp GGACACTGTGTCCCTAACATCTTCGAAGATCCAAGATaGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATC +
Preference number: 3 (lower is better)
Translates to: GHCVPNIFEDPR*PPEQVPESCLI
Trigger: GATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAGGGACACAGTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR CCA 72 bp AGACTCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTaGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTT +
Preference number: 3 (lower is better)
Translates to: RLSFYSSHWKGW*RHQLPVPLSLF
Trigger: AAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGAGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR CCA 72 bp GTCACTGAGGGTCAAAGCTCTGTCCACTATTTTCTATaGGGCCATCCAAAATGGCATCTGCTGCTTAGCTCG +
Preference number: 3 (lower is better)
Translates to: VTEGQSSVHYFL*GHPKWHLLLSS
Trigger: CGAGCTAAGCAGCAGATGCCATTTTGGATGGCCCCATAGAAAATAGTGGACAGAGCTTTGACCCTCAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCATTTTCTTTGACCCAGTaGGAAACCGGGAGCTTAGAA +
Preference number: 3 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPFSLTQ*ETGSLE
Trigger: TTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACTTTGCCTGAGGAACTaGCCGGCTTCGATCCTGCGC +
Preference number: 3 (lower is better)
Translates to: RDEELLELHVSMEGRVLKLCLRN*PASILR
Trigger: GCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAG...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCAAGTGCATGCATTATaGCTAAGAAGAGTCACTGAG +
Preference number: 3 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSQVHAL*LRRVTE
Trigger: CTCAGTGACTCTTCTTAGCAATAATGCATGCACTTG...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTCTAAAGGTGCCAGCTTaGGATCATCCCAGTAAAGAA +
Preference number: 3 (lower is better)
Translates to: QCQQQWLSETSVPKGASFLKVPA*DHPSKE
Trigger: TTCTTTACTGGGATGATCCAAAGCTGGCACCTTTAG...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR GCA 72 bp CTGATAGCCCAAACTCCAGCCCTGTGGAAAGCTACTTaGATTTTTATGACCTCCATGTTCTTCCTCTTCATC +
Preference number: 3 (lower is better)
Translates to: LIAQTPALWKAT*IFMTSMFFLFI
Trigger: GATGAAGAGGAAGAACATGGAGGTCATAAAAATGCAAGTAGCTTTCCACAGGGCTGGAGTTTGGGCTATCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGCTGTTCAGGATCCAGTaGTATTTGACCATTCTAAAT +
Preference number: 3 (lower is better)
Translates to: LRETDECFAFSLTQLETGLFRIQ*YLTILN
Trigger: ATTTAGAATGGTCAAATACAACTGGATCCTGAACAG...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTACAGGTCCCAGAGTCTaGTTTAATCAAGTGCATGCA +
Preference number: 3 (lower is better)
Translates to: SKMCKNDSISDAPGSPPITGPRV*FNQVHA
Trigger: TGCATGCACTTGATTAAACAAGACTCTGGGACCTGT...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCTGTTCAGGATCCAGTaGTATTTGACCATTCTAAAT +
Preference number: 3 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNLFRIQ*YLTILN
Trigger: ATTTAGAATGGTCAAATACAACTGGATCCTGAACAG...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR CCA 72 bp AGATCAGGTCAAACATATGTAGCAATGACTCTGTCCTaGTATCTCACTGGACAAGCACATTTCATCAACTGT +
Preference number: 3 (lower is better)
Translates to: RSGQTYVAMTLS*YLTGQAHFINC
Trigger: ACAGTTGATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGTTTGACCTGATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACACAGGTCCCAGAGTCTaGTTTAATCAAGTGCATGCA +
Preference number: 3 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDTGPRV*FNQVHA
Trigger: TGCATGCACTTGATTAAACAAGACTCTGGGACCTGT...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACCAAGTGCATGCATTATaGCTAAGAAGAGTCACTGAG +
Preference number: 3 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDQVHAL*LRRVTE
Trigger: CTCAGTGACTCTTCTTAGCAATAATGCATGCACTTG...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR TCA 72 bp CATTTTCCAAACAAAGACTCCAAATGGAAAGAGGGATaGGGAGCTCTTAGAATTACATGTAAGTATGGAAGG +
Preference number: 3 (lower is better)
Translates to: HFPNKDSKWKEG*GALRITCKYGR
Trigger: CCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGGAGTCTTTGTTTGGAAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR CCA 72 bp AACATATGTAGCAATGACTCTGTCCTGGTATCTCACTaGACAAGCACATTTCATCAACTGTTAAAAAGCTTG +
Preference number: 3 (lower is better)
Translates to: NICSNDSVLVSH*TSTFHQLLKSL
Trigger: CAAGCTTTTTAACAGTTGATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
3UTR-3UTR CAA 90 bp GATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACCACTGTTCAGGATCCAGTaGTATTTGACCATTCTAAAT +
Preference number: 3 (lower is better)
Translates to: DEELLELHVSMEGRVLKPLFRIQ*YLTILN
Trigger: ATTTAGAATGGTCAAATACAACTGGATCCTGAACAG...TGGTTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp GGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCGCTGATCCCATTTGCTaGGGCGCCCGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: GTCRLRSCAFYLILTGEAADPIC*GARQRQ
Trigger: CTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGC...GGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTGGCTCTGTCCAGTGCTaGCTGGAGGTTGCACTTGTG +
Preference number: 4 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASGSVQC*LEVALV
Trigger: CACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCC...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCGAACCGTCCCCGAGTTaGCACAGCAGCCCCACTAAG +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSREPSPS*HSSPTK
Trigger: CTTAGTGGGGCTGCTGTGTCAACTCGGGGACGGTTC...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCAAGCGGAGCTGGCGCTaGCTGATCCCATTTGCTGCG +
Preference number: 4 (lower is better)
Translates to: LQFQSVTVLSVAPHPSSRKRSWR*LIPFAA
Trigger: CGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTT...GCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGGGAGCTGGCGCTGGCTaGTCCCATTTGCTGCGGCGC +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVGAGAG*SHLLRR
Trigger: GCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCC...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCTGTACCGAACCGTCCCCGAGTTaGCACAGCAGCCCCACTAAG +
Preference number: 4 (lower is better)
Translates to: CRLRSCAFYLILTGEACTEPSPS*HSSPTK
Trigger: CTTAGTGGGGCTGCTGTGTCAACTCGGGGACGGTTC...GGTACAGGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR TCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTGACTCCAGGTGCCAATaGAACAGCTGGTGGCACTAT +
Preference number: 4 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASDSRCQ*NSWWHY
Trigger: ATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTC...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTGATCCCATTTGCTaGGGCGCCCGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPADPIC*GARQRQ
Trigger: CTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGC...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAAGCTGATCCCATTTGCTaGGGCGCCCGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQADPIC*GARQRQ
Trigger: CTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGC...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTGGAGAAGCCTGTACCTaGTATCCAAGCAGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASGEACT*YPSSPE
Trigger: CTCTGGACTGCTTGGATACCAGGTACAGGCTTCTCC...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGGGAGCTGGCGCTGGCTaGTCCCATTTGCTGCGGCGC +
Preference number: 4 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKGAGAG*SHLLRR
Trigger: GCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCC...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGGGCATCCAAGGCTCCTaGAGGAGCGGCGGCGGTGGT +
Preference number: 4 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKGIQGS*RSGGGG
Trigger: ACCACCGCCGCCGCTCCTTCAGGAGCCTTGGATGCC...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp ATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCGCTGATCCCATTTGCTaGGGCGCCCGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: IFEDPRWPPEQVPESCLIADPIC*GARQRQ
Trigger: CTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGC...GATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCCAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRQLVAL*LVLRRE
Trigger: CTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTG...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTTTGGGCTCTGTCCAGTaGTGGCTGGAGGTTGCACTT +
Preference number: 4 (lower is better)
Translates to: FQSLERLVEASTACPSLALGSVQ*WLEVAL
Trigger: AAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAA...AGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTTGGGCTCTGTCCAGTaGTGGCTGGAGGTTGCACTT +
Preference number: 4 (lower is better)
Translates to: LQFQSVTVLSVAPHPSSRLGSVQ*WLEVAL
Trigger: AAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAA...GCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCTGAAGCGGAGCTGGCGCTaGCTGATCCCATTTGCTGCG +
Preference number: 4 (lower is better)
Translates to: NLPASILRLLSHSDWRSLKRSWR*LIPFAA
Trigger: CGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTT...CAGGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGTCCACCTGGGGCCGTTaGCGGCAGGAAGAGAAGCGG +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVSTWGR*RQEEKR
Trigger: CCGCTTCTCTTCCTGCCGCCAACGGCCCCAGGTGGA...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TCCCTCTCTCGCTCTTTGCCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTTCTCTGAGCAATGGGAGCTaGCTGGTGATAGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: SLSRSLPEELAGFDPAPSLSNGS*LVIDSD
Trigger: GTCACTGTCTATCACCAGCCAGCTCCCATTGCTCAG...AGAAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp TTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGGTGGCACTATGCTTaGTACTCCGTAGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: LQFQSVTVLSVAPHPSSRWWHYA*YSVGRL
Trigger: CAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCA...GCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTGGTGGCACTATGCTTaGTACTCCGTAGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRWWHYA*YSVGRL
Trigger: CAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCA...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGTGGTGGCACTATGCTTaGTACTCCGTAGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLWWHYA*YSVGRL
Trigger: CAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCA...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTTCTCGGCCGCATTCTaGGATGGTTTCAGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRFSAAF*DGFSFP
Trigger: AGGGAAGCTGAAACCATCTCAGAATGCGGCCGAGAA...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGTTCTCGGCCGCATTCTaGGATGGTTTCAGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLFSAAF*DGFSFP
Trigger: AGGGAAGCTGAAACCATCTCAGAATGCGGCCGAGAA...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTATCCAAAATGGCATCTaGTGCTTAGCTCGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASIQNGI*CLARGC
Trigger: ACAGCCACGAGCTAAGCAGCAGATGCCATTTTGGAT...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp CTCGCTCTTTGCCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATCTCCAGGTCCCACTTTaGCCTTCTCCTCAGTCGTCA +
Preference number: 4 (lower is better)
Translates to: LALCLRNLPASILRLLSHLQVPL*PSPQSS
Trigger: TGACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAG...ATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTCCAGGTCCCACTTTaGCCTTCTCCTCAGTCGTCA +
Preference number: 4 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPLQVPL*PSPQSS
Trigger: TGACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAG...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGTTGGACTTGTCCCTGTaGCAGCCTTCACCACTCCAT +
Preference number: 4 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLLDLSL*QPSPLH
Trigger: ATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAA...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp AGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCAGCTTCAGAGGCACGTCATTaGTTTCTACTTCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: SPCTGCRVQGCCGVMSSASEARH*FLLQPP
Trigger: TGGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGA...AGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGGTGCTGGCTGGAGGTTaGACTTGTGTTATCGGATAC +
Preference number: 4 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLVLAGG*TCVIGY
Trigger: GTATCCGATAACACAAGTGCAACCTCCAGCCAGCAC...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAATCCACCTGGGGCCGTTaGCGGCAGGAAGAGAAGCGG +
Preference number: 4 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKSTWGR*RQEEKR
Trigger: CCGCTTCTCTTCCTGCCGCCAACGGCCCCAGGTGGA...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTTTGGACTTGTCCCTGTaGCAGCCTTCACCACTCCAT +
Preference number: 4 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPLDLSL*QPSPLH
Trigger: ATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAA...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCTTGGACTTGTCCCTGTaGCAGCCTTCACCACTCCAT +
Preference number: 4 (lower is better)
Translates to: GTCRLRSCAFYLILTGEALDLSL*QPSPLH
Trigger: ATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAA...GGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp CTACTTGTCATCCCACCCCCAGCTGCACTGTACTCACCATGGCTTCCGGCTAAGTGCACCATTGAAAGTTaGACTTGTCCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: LLVIPPPAALYSPWLPAKCTIES*TCPCGS
Trigger: GCTGCCACAGGGACAAGTCCAACTTTCAATGGTGCA...CTTAGCCGGAAGCCATGGTGAGTACAGTGCAGCTGGGGGTGGGATGACAAGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTGAGCAATGGGAGCTaGCTGGTGATAGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: YSSHWKGWWRHQLPVPLSLSNGS*LVIDSD
Trigger: GTCACTGTCTATCACCAGCCAGCTCCCATTGCTCAG...CGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGTATCGGATACTGTGTTaGCACAGGTGGGACCCCAGT +
Preference number: 4 (lower is better)
Translates to: YSSHWKGWWRHQLPVPLSYRILC*HRWDPS
Trigger: ACTGGGGTCCCACCTGTGCCAACACAGTATCCGATA...CGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCCTGTCCAGTGCTGGCTaGAGGTTGCACTTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRLSSAG*RLHLCY
Trigger: ATAACACAAGTGCAACCTCCAGCCAGCACTGGACAG...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGAAAAGGAGCACTTATTaGGCTCTGTCCAGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLKRSTY*ALSSAG
Trigger: GCCAGCACTGGACAGAGCCCAATAAGTGCTCCTTTT...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTGGAGCTGGCGCTGGCTaGTCCCATTTGCTGCGGCGC +
Preference number: 4 (lower is better)
Translates to: SKMCKNDSISDAPGSPPIGAGAG*SHLLRR
Trigger: GCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCC...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGAACCGTCCCCGAGTTaGCACAGCAGCCCCACTAAG +
Preference number: 4 (lower is better)
Translates to: QCQQQWLSETSVPKGASFEPSPS*HSSPTK
Trigger: CTTAGTGGGGCTGCTGTGTCAACTCGGGGACGGTTC...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTGACGCTGGCTCAATaGAGCCTGAGCCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSLTLAQ*SLSLSL
Trigger: GAGGGAAAGGCTCAGGCTGCATTGAGCCAGCGTCAG...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCGGAGCTGGCGCTaGCTGATCCCATTTGCTGCG +
Preference number: 4 (lower is better)
Translates to: IFEDPRWPPEQVPESCLIKRSWR*LIPFAA
Trigger: CGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTT...GATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTCTGATAGCCATTGGATaGATAATATGGTGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASLIAIG*IIWWLR
Trigger: CCTCAACCACCATATTATCCATCCAATGGCTATCAG...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTTGGTGGCACTATGCTTaGTACTCCGTAGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTWWHYA*YSVGRL
Trigger: CAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCA...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp AACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCTGTATCGGATACTGTGTTaGCACAGGTGGGACCCCAGT +
Preference number: 4 (lower is better)
Translates to: NLPASILRLLSHSDWRSLYRILC*HRWDPS
Trigger: ACTGGGGTCCCACCTGTGCCAACACAGTATCCGATA...CAGGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp GGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCCTGTCCAGTGCTGGCTaGAGGTTGCACTTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: GTCRLRSCAFYLILTGEALSSAG*RLHLCY
Trigger: ATAACACAAGTGCAACCTCCAGCCAGCACTGGACAG...GGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTGGCTCTGTCCAGTGCTaGCTGGAGGTTGCACTTGTG +
Preference number: 4 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVGSVQC*LEVALV
Trigger: CACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCC...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAAGGCTCTGTCCAGTGCTaGCTGGAGGTTGCACTTGTG +
Preference number: 4 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQGSVQC*LEVALV
Trigger: CACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCC...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TGCCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGTCAGAGGCACGTCATTaGTTTCTACTTCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: CLRNLPASILRLLSHSDWSEARH*FLLQPP
Trigger: TGGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGA...CCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR TCA 90 bp GGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTATAGCAGGTGATAACTaGGCAATGGGAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: GSANSNGYLKQVCLKVPAIAGDN*AMGAGW
Trigger: CCAGCCAGCTCCCATTGCTCAGTTATCACCTGCTAT...AGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTCAGGCAGCTCCTCTGTaGATCGCCTCTTCTGTGACT +
Preference number: 4 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVQAAPL*IASSVT
Trigger: AGTCACAGAAGAGGCGATTCACAGAGGAGCTGCCTG...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTCTACTTGCATTTTTATaGCCTCCATGTTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASLLAFL*PPCSSS
Trigger: AGAGGAAGAACATGGAGGTCATAAAAATGCAAGTAG...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR GCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCTGACGCTGGCTCAATaGAGCCTGAGCCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKLTLAQ*SLSLSL
Trigger: GAGGGAAAGGCTCAGGCTGCATTGAGCCAGCGTCAG...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAACAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQQLVAL*LVLRRE
Trigger: CTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTG...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSQLVAL*LVLRRE
Trigger: CTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTG...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CTGCAGCCAGTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGGCTCTGTCCAGTaGTGGCTGGAGGTTGCACTT +
Preference number: 4 (lower is better)
Translates to: LQPVLRETDECFAFSLTQLGSVQ*WLEVAL
Trigger: AAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAA...CTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAACTGGCTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGTTGGGCTCTGTCCAGTaGTGGCTGGAGGTTGCACTT +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVLGSVQ*WLEVAL
Trigger: AAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAA...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTCCCTCTCTCGCTCTTTaGCTGAGGAACTTGCCGGCT +
Preference number: 4 (lower is better)
Translates to: QCQQQWLSETSVPKGASFPSLAL*LRNLPA
Trigger: AGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGG...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGGAAGAGAAGCGGAGCTaGCGCTGGCTGATCCCATTT +
Preference number: 4 (lower is better)
Translates to: LRETDECFAFSLTQLETGEEKRS*RWLIPF
Trigger: AAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTC...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCTCCACCTGGGGCCGTTaGCGGCAGGAAGAGAAGCGG +
Preference number: 4 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFISTWGR*RQEEKR
Trigger: CCGCTTCTCTTCCTGCCGCCAACGGCCCCAGGTGGA...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGACTTGTCCCTGTaGCAGCCTTCACCACTCCAT +
Preference number: 4 (lower is better)
Translates to: GSANSNGYLKQVCLKVPALDLSL*QPSPLH
Trigger: ATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAA...AGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCGTGATAACTGAGCAATaGGAGCTGGCTGGTGATAGA +
Preference number: 4 (lower is better)
Translates to: GTCRLRSCAFYLILTGEAVITEQ*ELAGDR
Trigger: TCTATCACCAGCCAGCTCCCATTGCTCAGTTATCAC...GGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGCTCTGTCCAGTGCTaGCTGGAGGTTGCACTTGTG +
Preference number: 4 (lower is better)
Translates to: QCQQQWLSETSVPKGASFGSVQC*LEVALV
Trigger: CACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCC...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCCTATCTCATTCTGACTaGAGAAGCCTGTACCTGGTA +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRLSHSD*RSLYLV
Trigger: TACCAGGTACAGGCTTCTCCAGTCAGAATGAGATAG...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACGGAGCTGGCGCTGGCTaGTCCCATTTGCTGCGGCGC +
Preference number: 4 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDGAGAG*SHLLRR
Trigger: GCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCC...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCATTCTCGGCCGCATTCTaGGATGGTTTCAGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPFSAAF*DGFSFP
Trigger: AGGGAAGCTGAAACCATCTCAGAATGCGGCCGAGAA...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGTTCTCGGCCGCATTCTaGGATGGTTTCAGCTTCCCT +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVFSAAF*DGFSFP
Trigger: AGGGAAGCTGAAACCATCTCAGAATGCGGCCGAGAA...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCATAGCAGGTGATAACTaGGCAATGGGAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCIAGDN*AMGAGW
Trigger: CCAGCCAGCTCCCATTGCTCAGTTATCACCTGCTAT...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGGACTCCAGGTGCCAATaGAACAGCTGGTGGCACTAT +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVDSRCQ*NSWWHY
Trigger: ATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTC...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTACAGGCAGCTCCTCTGTaGATCGCCTCTTCTGTGACT +
Preference number: 4 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLQAAPL*IASSVT
Trigger: AGTCACAGAAGAGGCGATTCACAGAGGAGCTGCCTG...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCAGGCAGCTCCTCTGTaGATCGCCTCTTCTGTGACT +
Preference number: 4 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKQAAPL*IASSVT
Trigger: AGTCACAGAAGAGGCGATTCACAGAGGAGCTGCCTG...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTGTGCTGGCTGGAGGTTaGACTTGTGTTATCGGATAC +
Preference number: 4 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTVLAGG*TCVIGY
Trigger: GTATCCGATAACACAAGTGCAACCTCCAGCCAGCAC...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAAGGCCGCATTCTGAGATaGTTTCAGCTTCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQGRILR*FQLPFG
Trigger: GCCAAAGGGAAGCTGAAACCATCTCAGAATGCGGCC...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTTGCACCATTGAAAGTTaGACTTGTCCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTCTIES*TCPCGS
Trigger: GCTGCCACAGGGACAAGTCCAACTTTCAATGGTGCA...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
CDS-3UTR CCA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTCTGAGCAATGGGAGCTaGCTGGTGATAGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVLSNGS*LVIDSD
Trigger: GTCACTGTCTATCACCAGCCAGCTCCCATTGCTCAG...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATGAGCTCAGCTATTGGATGGATAATATaGTGGTTGAGGAGGGATACT +
Preference number: 4 (lower is better)
Translates to: SPCTGCRVQGCCGVMSSAIGWII*WLRRDT
Trigger: AGTATCCCTCCTCAACCACCATATTATCCATCCAAT...AGCTGAGCTCATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTCACTGGAAAGGCTGGTaGAGGCATCAACTGCCTGTC +
Preference number: 4 (lower is better)
Translates to: QCQQQWLSETSVPKGASFHWKGW*RHQLPV
Trigger: GACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTG...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCAGTCACTGGAAAGGCTaGTGGAGGCATCAACTGCCT +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCSHWKG*WRHQLP
Trigger: AGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACT...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR TCA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTTCAGAGGCACGTCATTaGTTTCTACTTCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTSEARH*FLLQPP
Trigger: TGGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGA...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
CDS-3UTR TCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTATAGCAGGTGATAACTaGGCAATGGGAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: QCQQQWLSETSVPKGASFIAGDN*AMGAGW
Trigger: CCAGCCAGCTCCCATTGCTCAGTTATCACCTGCTAT...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCGTGTCAGCAGGTTTCTaGATGTCAGAGGCACGTCAT +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCVSAGF*MSEARH
Trigger: ATGACGTGCCTCTGACATGCAGAAACCTGCTGACAC...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCATAGACAGTGACTGTTaGACCATTGAAAGTTGGACT +
Preference number: 4 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRIDSDC*TIESWT
Trigger: AGTCCAACTTTCAATGGTGCAACAGTCACTGTCTAT...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTGTGCTGGCTGGAGGTTaGACTTGTGTTATCGGATAC +
Preference number: 4 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVVLAGG*TCVIGY
Trigger: GTATCCGATAACACAAGTGCAACCTCCAGCCAGCAC...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGGTGCTGGCTGGAGGTTaGACTTGTGTTATCGGATAC +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVVLAGG*TCVIGY
Trigger: GTATCCGATAACACAAGTGCAACCTCCAGCCAGCAC...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATGGCCGCATTCTGAGATaGTTTCAGCTTCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNGRILR*FQLPFG
Trigger: GCCAAAGGGAAGCTGAAACCATCTCAGAATGCGGCC...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CAGCCAGTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGCTGAGCAATGGGAGCTaGCTGGTGATAGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: QPVLRETDECFAFSLTQLLSNGS*LVIDSD
Trigger: GTCACTGTCTATCACCAGCCAGCTCCCATTGCTCAG...CAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAACTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGCAAATAAGAGCAGCCTaGACCTTCTACTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLQIRAA*TFYFLF
Trigger: AAAGAGAAAGTAGAAGGTCCAGGCTGCTCTTATTTG...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGCTGTCCAGTGCTGGCTaGAGGTTGCACTTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: LRETDECFAFSLTQLETGLSSAG*RLHLCY
Trigger: ATAACACAAGTGCAACCTCCAGCCAGCACTGGACAG...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTAAAAGGAGCACTTATTaGGCTCTGTCCAGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVKRSTY*ALSSAG
Trigger: GCCAGCACTGGACAGAGCCCAATAAGTGCTCCTTTT...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAGGAGAAGCCTGTACCTaGTATCCAAGCAGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLGEACT*YPSSPE
Trigger: CTCTGGACTGCTTGGATACCAGGTACAGGCTTCTCC...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCAGGTTTGGGATGACTaGTATAAATATACATGGGTT +
Preference number: 4 (lower is better)
Translates to: FQSLERLVEASTACPSLAQVWDD*YKYTWV
Trigger: AACCCATGTATATTTATATCAGTCATCCCAAACCTG...AGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAAGACTCCAGGTGCCAATaGAACAGCTGGTGGCACTAT +
Preference number: 4 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKDSRCQ*NSWWHY
Trigger: ATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTC...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTCTCTCGCTCTTTGCCTaGGGAACTTGCCGGCTTCGA +
Preference number: 4 (lower is better)
Translates to: SKMCKNDSISDAPGSPPILSLFA*GTCRLR
Trigger: TCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAG...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAAGGCCGCATTCTGAGATaGTTTCAGCTTCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKGRILR*FQLPFG
Trigger: GCCAAAGGGAAGCTGAAACCATCTCAGAATGCGGCC...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTATGCACCATTGAAAGTTaGACTTGTCCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLCTIES*TCPCGS
Trigger: GCTGCCACAGGGACAAGTCCAACTTTCAATGGTGCA...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGGTGATAACTGAGCAATaGGAGCTGGCTGGTGATAGA +
Preference number: 4 (lower is better)
Translates to: LRETDECFAFSLTQLETGVITEQ*ELAGDR
Trigger: TCTATCACCAGCCAGCTCCCATTGCTCAGTTATCAC...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCGTGATAACTGAGCAATaGGAGCTGGCTGGTGATAGA +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCVITEQ*ELAGDR
Trigger: TCTATCACCAGCCAGCTCCCATTGCTCAGTTATCAC...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGTGATAACTGAGCAATaGGAGCTGGCTGGTGATAGA +
Preference number: 4 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPVITEQ*ELAGDR
Trigger: TCTATCACCAGCCAGCTCCCATTGCTCAGTTATCAC...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAAGAACCGTCCCCGAGTTaGCACAGCAGCCCCACTAAG +
Preference number: 4 (lower is better)
Translates to: RDEELLELHVSMEGRVLKEPSPS*HSSPTK
Trigger: CTTAGTGGGGCTGCTGTGTCAACTCGGGGACGGTTC...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCCTTCTATCTCATTCTaGCTGGAGAAGCCTGTACCT +
Preference number: 4 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNPSISF*LEKPVP
Trigger: AGGTACAGGCTTCTCCAGTCAGAATGAGATAGAAGG...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR GCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGACTGACGCTGGCTCAATaGAGCCTGAGCCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: PNGKRDEELLELHVSMEGLTLAQ*SLSLSL
Trigger: GAGGGAAAGGCTCAGGCTGCATTGAGCCAGCGTCAG...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTCAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: SKMCKNDSISDAPGSPPIQLVAL*LVLRRE
Trigger: CTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTG...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAGGTGGAGGCATCAACTaGCTGTCCCTCTCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: PNGKRDEELLELHVSMEGGGGIN*LSLSRS
Trigger: AGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACC...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCCTCCAGGTCCCACTTTaGCCTTCTCCTCAGTCGTCA +
Preference number: 4 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFILQVPL*PSPQSS
Trigger: TGACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAG...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCGTAGAAAGACTTTaGCACCAGTTTCAATTTGAA +
Preference number: 4 (lower is better)
Translates to: YSSHWKGWWRHQLPVPLSLVERL*HQFQFE
Trigger: TTCAAATTGAAACTGGTGCCAAAGTCTTTCTACGAG...CGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAACTGTCCAGTGCTGGCTaGAGGTTGCACTTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKLSSAG*RLHLCY
Trigger: ATAACACAAGTGCAACCTCCAGCCAGCACTGGACAG...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAAAAAAGGAGCACTTATTaGGCTCTGTCCAGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKKRSTY*ALSSAG
Trigger: GCCAGCACTGGACAGAGCCCAATAAGTGCTCCTTTT...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCATTTTATTCCAGTCACTaGAAAGGCTGGTGGAGGCAT +
Preference number: 4 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPFYSSH*KGWWRH
Trigger: ATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAA...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAACTATCTCATTCTGACTaGAGAAGCCTGTACCTGGTA +
Preference number: 4 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQLSHSD*RSLYLV
Trigger: TACCAGGTACAGGCTTCTCCAGTCAGAATGAGATAG...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTATAGCAGGTGATAACTaGGCAATGGGAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: SKMCKNDSISDAPGSPPIIAGDN*AMGAGW
Trigger: CCAGCCAGCTCCCATTGCTCAGTTATCACCTGCTAT...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGACAGGCAGCTCCTCTGTaGATCGCCTCTTCTGTGACT +
Preference number: 4 (lower is better)
Translates to: PNGKRDEELLELHVSMEGQAAPL*IASSVT
Trigger: AGTCACAGAAGAGGCGATTCACAGAGGAGCTGCCTG...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACCTGACGCTGGCTCAATaGAGCCTGAGCCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDLTLAQ*SLSLSL
Trigger: GAGGGAAAGGCTCAGGCTGCATTGAGCCAGCGTCAG...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTATTGGATGGATAATATaGTGGTTGAGGAGGGATACT +
Preference number: 4 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTIGWII*WLRRDT
Trigger: AGTATCCCTCCTCAACCACCATATTATCCATCCAAT...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198042.5
CDS-3UTR CCA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTGATAGCCATTGGATaGATAATATGGTGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSLIAIG*IIWWLR
Trigger: CCTCAACCACCATATTATCCATCCAATGGCTATCAG...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATTTTCATCTTCTTGGCTaGATAATCATGGCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNFHLLG*IIMASG
Trigger: GCCGGAAGCCATGATTATCCAGCCAAGAAGATGAAA...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR TCA 90 bp GGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTCTAGAATACTCAGCATaGACTGTTTGTAAGAGATTC +
Preference number: 4 (lower is better)
Translates to: GSANSNGYLKQVCLKVPALEYSA*TVCKRF
Trigger: GAATCTCTTACAAACAGTTCATGCTGAGTATTCTAG...AGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAGACTCCAGGTGCCAATaGAACAGCTGGTGGCACTAT +
Preference number: 4 (lower is better)
Translates to: PNGKRDEELLELHVSMEGDSRCQ*NSWWHY
Trigger: ATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTC...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp AAGGGCAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCACTGTGGAAAGCTACTTaGATTTTTATGACCTCCATG +
Preference number: 4 (lower is better)
Translates to: KGSANSNGYLKQVCLKVPLWKAT*IFMTSM
Trigger: CATGGAGGTCATAAAAATGCAAGTAGCTTTCCACAG...TGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTGCCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAAGAAGAGAAGCGGAGCTaGCGCTGGCTGATCCCATTT +
Preference number: 4 (lower is better)
Translates to: RDEELLELHVSMEGRVLKEEKRS*RWLIPF
Trigger: AAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTC...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACTCCAGGTCCCACTTTaGCCTTCTCCTCAGTCGTCA +
Preference number: 4 (lower is better)
Translates to: RDEELLELHVSMEGRVLKLQVPL*PSPQSS
Trigger: TGACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAG...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CTGCAGCCAGTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGCAAATAAGAGCAGCCTaGACCTTCTACTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: LQPVLRETDECFAFSLTQQIRAA*TFYFLF
Trigger: AAAGAGAAAGTAGAAGGTCCAGGCTGCTCTTATTTG...CTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAACTGGCTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCCAAATAAGAGCAGCCTaGACCTTCTACTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCQIRAA*TFYFLF
Trigger: AAAGAGAAAGTAGAAGGTCCAGGCTGCTCTTATTTG...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCCAGACTGATAGCCATTaGATGGATAATATGGTGGTT +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCQTDSH*MDNMVV
Trigger: AACCACCATATTATCCATCCAATGGCTATCAGTCTG...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTACCGTTTTCATCTTCTTaGCTGGATAATCATGGCTTC +
Preference number: 4 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLPFSSS*LDNHGF
Trigger: GAAGCCATGATTATCCAGCCAAGAAGATGAAAACGG...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGATGGGGCCATCCAAAATaGCATCTGCTGCTTAGCTCG +
Preference number: 4 (lower is better)
Translates to: PNGKRDEELLELHVSMEGWGHPK*HLLLSS
Trigger: CGAGCTAAGCAGCAGATGCCATTTTGGATGGCCCCA...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR TCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCTCAGAGGCACGTCATTaGTTTCTACTTCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFISEARH*FLLQPP
Trigger: TGGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGA...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp CGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCAGGTTTGGGATGACTaGTATAAATATACATGGGTT +
Preference number: 4 (lower is better)
Translates to: RRSKMAPRTGPRVLFNQVQVWDD*YKYTWV
Trigger: AACCCATGTATATTTATATCAGTCATCCCAAACCTG...CACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCCTAGAATACTCAGCATaGACTGTTTGTAAGAGATTC +
Preference number: 4 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCLEYSA*TVCKRF
Trigger: GAATCTCTTACAAACAGTTCATGCTGAGTATTCTAG...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp CAGCCAGTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGATAGACAGTGACTGTTaGACCATTGAAAGTTGGACT +
Preference number: 4 (lower is better)
Translates to: QPVLRETDECFAFSLTQLIDSDC*TIESWT
Trigger: AGTCCAACTTTCAATGGTGCAACAGTCACTGTCTAT...CAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAACTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTACAAATAAGAGCAGCCTaGACCTTCTACTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLQIRAA*TFYFLF
Trigger: AAAGAGAAAGTAGAAGGTCCAGGCTGCTCTTATTTG...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CAGTGCCAACAGCAATGGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTCAGACTGATAGCCATTaGATGGATAATATGGTGGTT +
Preference number: 4 (lower is better)
Translates to: QCQQQWLSETSVPKGASFQTDSH*MDNMVV
Trigger: AACCACCATATTATCCATCCAATGGCTATCAGTCTG...AAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCCATTGCTGTTGGCACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAATATCGGATACTGTGTTaGCACAGGTGGGACCCCAGT +
Preference number: 4 (lower is better)
Translates to: RDEELLELHVSMEGRVLKYRILC*HRWDPS
Trigger: ACTGGGGTCCCACCTGTGCCAACACAGTATCCGATA...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCAGGTTTGGGATGACTaGTATAAATATACATGGGTT +
Preference number: 4 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKQVWDD*YKYTWV
Trigger: AACCCATGTATATTTATATCAGTCATCCCAAACCTG...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGCTAGAATACTCAGCATaGACTGTTTGTAAGAGATTC +
Preference number: 4 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKLEYSA*TVCKRF
Trigger: GAATCTCTTACAAACAGTTCATGCTGAGTATTCTAG...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTACTCGTAGAAAGACTTTaGCACCAGTTTCAATTTGAA +
Preference number: 4 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLLVERL*HQFQFE
Trigger: TTCAAATTGAAACTGGTGCCAAAGTCTTTCTACGAG...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCTCGTAGAAAGACTTTaGCACCAGTTTCAATTTGAA +
Preference number: 4 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNLVERL*HQFQFE
Trigger: TTCAAATTGAAACTGGTGCCAAAGTCTTTCTACGAG...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAAAAAAGGAGCACTTATTaGGCTCTGTCCAGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: RDEELLELHVSMEGRVLKKRSTY*ALSSAG
Trigger: GCCAGCACTGGACAGAGCCCAATAAGTGCTCCTTTT...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
43% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR TCA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAACAGGTTTGGGATGACTaGTATAAATATACATGGGTT +
Preference number: 4 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKQVWDD*YKYTWV
Trigger: AACCCATGTATATTTATATCAGTCATCCCAAACCTG...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACATGCCGGCTTCGATCCTaGGCCTTCTATCTCATTCTG +
Preference number: 4 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTCRLRS*AFYLIL
Trigger: CAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCA...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR GCA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACCAAAATGGCATCTGCTaGTTAGCTCGTGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDQNGIC*LARGCD
Trigger: ATCACAGCCACGAGCTAAGCAGCAGATGCCATTTTG...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CCA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACATATCGGATACTGTGTTaGCACAGGTGGGACCCCAGT +
Preference number: 4 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTYRILC*HRWDPS
Trigger: ACTGGGGTCCCACCTGTGCCAACACAGTATCCGATA...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCATAGACAGTGACTGTTaGACCATTGAAAGTTGGACT +
Preference number: 4 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFIIDSDC*TIESWT
Trigger: AGTCCAACTTTCAATGGTGCAACAGTCACTGTCTAT...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACATGCACCATTGAAAGTTaGACTTGTCCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTCTIES*TCPCGS
Trigger: GCTGCCACAGGGACAAGTCCAACTTTCAATGGTGCA...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGACTGATAGCCATTGGATaGATAATATGGTGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: PNGKRDEELLELHVSMEGLIAIG*IIWWLR
Trigger: CCTCAACCACCATATTATCCATCCAATGGCTATCAG...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp TCAAAAATGTGCAAAAATGACAGTATCTCAGACGCTCCTGGCTCACCACCAATTCTATCTCATTCTGACTaGAGAAGCCTGTACCTAAAT +
Preference number: 4 (lower is better)
Translates to: SKMCKNDSISDAPGSPPILSHSD*RSLYLN
Trigger: ATTTAGGTACAGGCTTCTCCAGTCAGAATGAGATAG...AATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACATTTTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR TCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCCTAGAATACTCAGCATaGACTGTTTGTAAGAGATTC +
Preference number: 4 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFILEYSA*TVCKRF
Trigger: GAATCTCTTACAAACAGTTCATGCTGAGTATTCTAG...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCCTCGTAGAAAGACTTTaGCACCAGTTTCAATTTGAA +
Preference number: 4 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFILVERL*HQFQFE
Trigger: TTCAAATTGAAACTGGTGCCAAAGTCTTTCTACGAG...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR GCA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAAATAGACAGTGACTGTTaGACCATTGAAAGTTGGACT +
Preference number: 4 (lower is better)
Translates to: RDEELLELHVSMEGRVLKIDSDC*TIESWT
Trigger: AGTCCAACTTTCAATGGTGCAACAGTCACTGTCTAT...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACATTGGATGGATAATATaGTGGTTGAGGAGGGATACT +
Preference number: 4 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDIGWII*WLRRDT
Trigger: AGTATCCCTCCTCAACCACCATATTATCCATCCAAT...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CCA 90 bp GATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACCACAGACTGATAGCCATTaGATGGATAATATGGTGGTT +
Preference number: 4 (lower is better)
Translates to: DEELLELHVSMEGRVLKPQTDSH*MDNMVV
Trigger: AACCACCATATTATCCATCCAATGGCTATCAGTCTG...TGGTTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS TCA 90 bp CCTGGGGCCGTTGGCGGCAGGAAGAGAAGCGGAGCTGGCGCTGGCTaGTCCCATTTGCTGCGGCGCCCGCCAGCGGCAGGATGTGTCGCG +
Preference number: 5 (lower is better)
Translates to: PGAVGGRKRSGAGAG*SHLLRRPPAAGCVA
Trigger: CGCGACACATCCTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCCTGCCGCCAACGGCCCCAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 90 bp GACTTCTCCACCTGGGGCCGTTGGCGGCAGGAAGAGAAGCGGAGCTaGCGCTGGCTGATCCCATTTGCTGCGGCGCCCGCCAGCGGCAGG +
Preference number: 5 (lower is better)
Translates to: DFSTWGRWRQEEKRS*RWLIPFAAAPASGR
Trigger: CCTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCCTGCCGCCAACGGCCCCAGGTGGAGAAGTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 90 bp TCCACCTGGGGCCGTTGGCGGCAGGAAGAGAAGCGGAGCTGGCGCTaGCTGATCCCATTTGCTGCGGCGCCCGCCAGCGGCAGGATGTGT +
Preference number: 5 (lower is better)
Translates to: STWGRWRQEEKRSWR*LIPFAAAPASGRMC
Trigger: ACACATCCTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCCTGCCGCCAACGGCCCCAGGTGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp AGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCTGCAGCCAGTGCCATGAGCATAGCATaGATCTTGGCAGCCACGGCA +
Preference number: 5 (lower is better)
Translates to: SQSPSCRWHHIPLLAAASAMSIA*ILAATA
Trigger: TGCCGTGGCTGCCAAGATCAATGCTATGCTCATGGC...ACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS GCA 90 bp ATGCTGGCAAGACTCCAGGTGCCAATGAAACAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAGGCTGAACTGGCTGCTGAGGAGGGG +
Preference number: 5 (lower is better)
Translates to: MLARLQVPMKQLVAL*LVLRREAELAAEEG
Trigger: CCCCTCCTCAGCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTCTTGCCAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGCTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCT +
Preference number: 5 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLLVALC*VLRREA
Trigger: AGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAG...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS TCA 90 bp TCCCACTTTGGCCTTCTCCTCAGTCGTCATGAACCGTCCCCGAGTTaGCACAGCAGCCCCACTAAGCCGACTGATCTCATCTTGTGTCTG +
Preference number: 5 (lower is better)
Translates to: SHFGLLLSRHEPSPS*HSSPTKPTDLILCL
Trigger: CAGACACAAGATGAGATCAGTCGGCTTAGTGGGGCTGCTGTGTCAACTCGGGGACGGTTCATGACGACTGAGGAGAAGGCCAAAGTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTTCTCCAGGTCCCACTTaGGCCTTCTCCTCAGTCGTC +
Preference number: 5 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTSPGPT*AFSSVV
Trigger: GACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAGA...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
CDS-3UTR CAA 90 bp CTGGATAATCATGGCTTCCGGCTAAGGCCCCAGACCCATTCCTTTCATCAGACTTTCTCGCAGAGCTTCTaGGCAGCAGCCAGGCCTTCA +
Preference number: 5 (lower is better)
Translates to: LDNHGFRLRPQTHSFHQTFSQSF*AAARPS
Trigger: TGAAGGCCTGGCTGCTGCCAAGAAGCTCTGCGAGAA...AGTCTGATGAAAGGAATGGGTCTGGGGCCTTAGCCGGAAGCCATGATTATCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
CDS GCA 90 bp ATGCTGGCAAGACTCCAGGTGCCAATGAAACAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAGGCTGAACTGGCTGGTAATGGTACA +
Preference number: 5 (lower is better)
Translates to: MLARLQVPMKQLVAL*LVLRREAELAGNGT
Trigger: TGTACCATTACCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTCTTGCCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CAA 90 bp TTTTCTTTGACCCAGTTGGAAACCGGGAGCTTAGAAGGGCAGTGCCAACAGCAATCTCCAGGTCCCACTTaGGCCTTCTCCTCAGTCGTC +
Preference number: 5 (lower is better)
Translates to: FSLTQLETGSLEGQCQQQSPGPT*AFSSVV
Trigger: GACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAGA...TTGCTGTTGGCACTGCCCTTCTAAGCTCCCGGTTTCCAACTGGGTCAAAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTCTTCTCGCGTGACTGTTGCACCATaGAAAGTTGGACTTGTCCCT +
Preference number: 5 (lower is better)
Translates to: LQFQSVTVLSVAPHPSSRVTVAP*KVGLVP
Trigger: AGGGACAAGTCCAACTTTCAATGGTGCAACAGTCAC...GCGAGAAGAGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTAGTGCTGGCTGGAGGTaGCACTTGTGTTATCGGATA +
Preference number: 5 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPSAGWR*HLCYRI
Trigger: TATCCGATAACACAAGTGCAACCTCCAGCCAGCACT...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TGCCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGTGCTGGCTGGAGGTaGCACTTGTGTTATCGGATA +
Preference number: 5 (lower is better)
Translates to: CLRNLPASILRLLSHSDWSAGWR*HLCYRI
Trigger: TATCCGATAACACAAGTGCAACCTCCAGCCAGCACT...CCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CAA 90 bp ATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCCTTTGCCTGAGGAACTaGCCGGCTTCGATCCTGCGC +
Preference number: 5 (lower is better)
Translates to: IFEDPRWPPEQVPESCLILCLRN*PASILR
Trigger: GCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAG...GATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS GCA 90 bp ATAAAAGGAGCACTTATTGGGCTCTGTCCAGTGCTGGCTGGAGGTTaGACTTGTGTTATCGGATACTGTGTTGGCACAGGTGGGACCCCA +
Preference number: 5 (lower is better)
Translates to: IKGALIGLCPVLAGG*TCVIGYCVGTGGTP
Trigger: TGGGGTCCCACCTGTGCCAACACAGTATCCGATAACACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAATAAGTGCTCCTTTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTCTCCAGGTCCCACTTaGGCCTTCTCCTCAGTCGTC +
Preference number: 5 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKSPGPT*AFSSVV
Trigger: GACGACTGAGGAGAAGGCCAAAGTGGGACCTGGAGA...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TGCCGGCTTCGATCCTGCGCCTTCTATCTCATTCTGACTGGAGAAGCCTGTACCGTGACTGTTGCACCATaGAAAGTTGGACTTGTCCCT +
Preference number: 5 (lower is better)
Translates to: CRLRSCAFYLILTGEACTVTVAP*KVGLVP
Trigger: AGGGACAAGTCCAACTTTCAATGGTGCAACAGTCAC...GGTACAGGCTTCTCCAGTCAGAATGAGATAGAAGGCGCAGGATCGAAGCCGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS-3UTR CAA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTATTCTCGCAGAGCTTCTaGGCAGCAGCCAGGCCTTCA +
Preference number: 5 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLFSQSF*AAARPS
Trigger: TGAAGGCCTGGCTGCTGCCAAGAAGCTCTGCGAGAA...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp AACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTACTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCT +
Preference number: 5 (lower is better)
Translates to: NIFEDPRWPPEQVPESCLLVALC*VLRREA
Trigger: AGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAG...TAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 90 bp GGGAGCTGGCTGGTGATAGACAGTGACTGTTGCACCATTGAAAGTTaGACTTGTCCCTGTGGCAGCCTTCACCACTCCATTGGTGATTAT +
Preference number: 5 (lower is better)
Translates to: GSWLVIDSDCCTIES*TCPCGSLHHSIGDY
Trigger: ATAATCACCAATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAACTTTCAATGGTGCAACAGTCACTGTCTATCACCAGCCAGCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATGCCATGAGCATAGCATaGATCTTGGCAGCCACGGCA +
Preference number: 5 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNAMSIA*ILAATA
Trigger: TGCCGTGGCTGCCAAGATCAATGCTATGCTCATGGC...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTACCACCAGGTCATCTTaGCTTTTATTGCTAGTTAGG +
Preference number: 5 (lower is better)
Translates to: FQSLERLVEASTACPSLATTRSS*LLLLVR
Trigger: CCTAACTAGCAATAAAAGCAAAGATGACCTGGTGGT...AGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TCCCTCTCTCGCTCTTTGCCTGAGGAACTTGCCGGCTTCGATCCTGCGCCTTCTGCCTTCACCACTCCATaGGTGATTATTTCTTTGATT +
Preference number: 5 (lower is better)
Translates to: SLSRSLPEELAGFDPAPSAFTTP*VIISLI
Trigger: AATCAAAGAAATAATCACCAATGGAGTGGTGAAGGC...AGAAGGCGCAGGATCGAAGCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS GCA 90 bp AAATATACATGGGTTCAAAAGCCTCTCGGCCTGACGCTGGCTCAATaGAGCCTGAGCCTTTCCCTCGTAGAAAGACTTTGGCACCAGTTT +
Preference number: 5 (lower is better)
Translates to: KYTWVQKPLGLTLAQ*SLSLSLVERLWHQF
Trigger: AAACTGGTGCCAAAGTCTTTCTACGAGGGAAAGGCTCAGGCTGCATTGAGCCAGCGTCAGGCCGAGAGGCTTTTGAACCCATGTATATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTACCACCAGGTCATCTTaGCTTTTATTGCTAGTTAGG +
Preference number: 5 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPTTRSS*LLLLVR
Trigger: CCTAACTAGCAATAAAAGCAAAGATGACCTGGTGGT...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGGTCAGAGGCACGTCATaGATTTCTACTTCAGCCACC +
Preference number: 5 (lower is better)
Translates to: LRETDECFAFSLTQLETGVRGTS*ISTSAT
Trigger: GGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGAC...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCGTCAGAGGCACGTCATaGATTTCTACTTCAGCCACC +
Preference number: 5 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCVRGTS*ISTSAT
Trigger: GGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGAC...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCGCCTTCACCACTCCATaGGTGATTATTTCTTTGATT +
Preference number: 5 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRAFTTP*VIISLI
Trigger: AATCAAAGAAATAATCACCAATGGAGTGGTGAAGGC...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTGGATAATATGGTGGTaGAGGAGGGATACTACTTAT +
Preference number: 5 (lower is better)
Translates to: IPVTGKAGGGINCLSLSRWIIWW*RRDTTY
Trigger: ATAAGTAGTATCCCTCCTCAACCACCATATTATCCA...GCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCCTCTCTCGCTCTTTGTGGATAATATGGTGGTaGAGGAGGGATACTACTTAT +
Preference number: 5 (lower is better)
Translates to: VTGKAGGGINCLSLSRSLWIIWW*RRDTTY
Trigger: ATAAGTAGTATCCCTCCTCAACCACCATATTATCCA...CAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCAGTGCTGGCTGGAGGTaGCACTTGTGTTATCGGATA +
Preference number: 5 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSSAGWR*HLCYRI
Trigger: TATCCGATAACACAAGTGCAACCTCCAGCCAGCACT...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 90 bp CTGAGGAGGGGGAACAACAGGGTAACCAGACTGATAGCCATTGGATaGATAATATGGTGGTTGAGGAGGGATACTACTTATAGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: LRRGNNRVTRLIAIG*IIWWLRRDTTYSRG
Trigger: CCCTCTGCTATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTTCCCCCTCCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GGGATGCTGTGGGGTGATGAGCTCAGCTCCCAACACATAGGAAAAGTAACTTTTGTCAGAGGCACGTCATaGATTTCTACTTCAGCCACC +
Preference number: 5 (lower is better)
Translates to: GMLWGDELSSQHIGKVTFVRGTS*ISTSAT
Trigger: GGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGAC...AAAAGTTACTTTTCCTATGTGTTGGGAGCTGAGCTCATCACCCCACAGCATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GAATACAGCGAGCCCATGCACAGGATGCAGAGTGCAGGGATGCTGTGGGGTGATTTGGTGATTATTTCTTaGATTCGGTTTACAGCTCTG +
Preference number: 5 (lower is better)
Translates to: EYSEPMHRMQSAGMLWGDLVIIS*IRFTAL
Trigger: CAGAGCTGTAAACCGAATCAAAGAAATAATCACCAA...ATCACCCCACAGCATCCCTGCACTCTGCATCCTGTGCATGGGCTCGCTGTATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp AGGACAAGTTGCAATTCCAGTCAGTCACCGTCCTGTCGGTGGCACCACATCCCTGCCTTCACCACTCCATaGGTGATTATTTCTTTGATT +
Preference number: 5 (lower is better)
Translates to: RTSCNSSQSPSCRWHHIPAFTTP*VIISLI
Trigger: AATCAAAGAAATAATCACCAATGGAGTGGTGAAGGC...AGGGATGTGGTGCCACCGACAGGACGGTGACTGACTGGAATTGCAACTTGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS TCA 90 bp TCTGTCCTCGTGTCAGCAGGTTTCTGCATGTCAGAGGCACGTCATTaGTTTCTACTTCAGCCACCACCAGGTCATCTTTGCTTTTATTGC +
Preference number: 5 (lower is better)
Translates to: SVLVSAGFCMSEARH*FLLQPPPGHLCFYC
Trigger: GCAATAAAAGCAAAGATGACCTGGTGGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGACATGCAGAAACCTGCTGACACGAGGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GGCTATCTGAAACAAGTGTGCCTAAAGGTGCCAGCTTTGGATCATCCCAGTAAAGGTTTCAGCTTCCCTTaGGCCATGAGCATAGCATTG +
Preference number: 5 (lower is better)
Translates to: GYLKQVCLKVPALDHPSKGFSFP*AMSIAL
Trigger: CAATGCTATGCTCATGGCCAAAGGGAAGCTGAAACC...TTTACTGGGATGATCCAAAGCTGGCACCTTTAGGCACACTTGTTTCAGATAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCGTGACTGTTGCACCATaGAAAGTTGGACTTGTCCCT +
Preference number: 5 (lower is better)
Translates to: IFEDPRWPPEQVPESCLIVTVAP*KVGLVP
Trigger: AGGGACAAGTCCAACTTTCAATGGTGCAACAGTCAC...GATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGGTGACTGTTGCACCATaGAAAGTTGGACTTGTCCCT +
Preference number: 5 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKVTVAP*KVGLVP
Trigger: AGGGACAAGTCCAACTTTCAATGGTGCAACAGTCAC...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGACTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCT +
Preference number: 5 (lower is better)
Translates to: PNGKRDEELLELHVSMEGLVALC*VLRREA
Trigger: AGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAG...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACTCCCTCTCTCGCTCTTaGCCTGAGGAACTTGCCGGC +
Preference number: 5 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDSLSRS*PEELAG
Trigger: GCCGGCAAGTTCCTCAGGCAAAGAGCGAGAGAGGGA...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029696.11
CDS-3UTR CAA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAATTCTCGCAGAGCTTCTaGGCAGCAGCCAGGCCTTCA +
Preference number: 5 (lower is better)
Translates to: RDEELLELHVSMEGRVLKFSQSF*AAARPS
Trigger: TGAAGGCCTGGCTGCTGCCAAGAAGCTCTGCGAGAA...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ATGTTATGCCACTGCAGAAATAGGGTTTTAAAAAGAATGGCGTCCCTTTATGACCTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCT +
Preference number: 5 (lower is better)
Translates to: MLCHCRNRVLKRMASLYDLVALC*VLRREA
Trigger: AGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAG...GTCATAAAGGGACGCCATTCTTTTTAAAACCCTATTTCTGCAGTGGCATAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAACCAGCCATGAGCATAGCATaGATCTTGGCAGCCACGGCA +
Preference number: 5 (lower is better)
Translates to: DEELLELHVSMEGRVLKPAMSIA*ILAATA
Trigger: TGCCGTGGCTGCCAAGATCAATGCTATGCTCATGGC...TGGTTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGACCACCAGGTCATCTTaGCTTTTATTGCTAGTTAGG +
Preference number: 5 (lower is better)
Translates to: FEDPRWPPEQVPESCLIKTTRSS*LLLLVR
Trigger: CCTAACTAGCAATAAAAGCAAAGATGACCTGGTGGT...CTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCGTCAGAGGCACGTCATaGATTTCTACTTCAGCCACC +
Preference number: 5 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFIVRGTS*ISTSAT
Trigger: GGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGAC...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CTGCAGCCAGTTCTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTGGATAATATGGTGGTaGAGGAGGGATACTACTTAT +
Preference number: 5 (lower is better)
Translates to: LQPVLRETDECFAFSLTQWIIWW*RRDTTY
Trigger: ATAAGTAGTATCCCTCCTCAACCACCATATTATCCA...CTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAGAACTGGCTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS CCA 90 bp AACAACAGGGTAACCAGACTGATAGCCATTGGATGGATAATATGGTaGTTGAGGAGGGATACTACTTATAGCAGAGGGTTGTGTATAGCC +
Preference number: 5 (lower is better)
Translates to: NNRVTRLIAIGWIIW*LRRDTTYSRGLCIA
Trigger: GGCTATACACAACCCTCTGCTATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CCA 90 bp GGGAACAACAGGGTAACCAGACTGATAGCCATTGGATGGATAATATaGTGGTTGAGGAGGGATACTACTTATAGCAGAGGGTTGTGTATA +
Preference number: 5 (lower is better)
Translates to: GNNRVTRLIAIGWII*WLRRDTTYSRGLCI
Trigger: TATACACAACCCTCTGCTATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CCAAATGGAAAGAGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAGGTTTCAGCTTCCCTTaGGCCATGAGCATAGCATTG +
Preference number: 5 (lower is better)
Translates to: PNGKRDEELLELHVSMEGGFSFP*AMSIAL
Trigger: CAATGCTATGCTCATGGCCAAAGGGAAGCTGAAACC...TCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCTCTTTCCATTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CTAACATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTCATCTTTGCTTTTATaGCTAGTTAGGCTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: LTSSKIQDGPQNRSQSLVSSLLL*LVRLLP
Trigger: TGGCAAAAGCCTAACTAGCAATAAAAGCAAAGATGA...AACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCTCATCTTTGCTTTTATaGCTAGTTAGGCTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSSSLLL*LVRLLP
Trigger: TGGCAAAAGCCTAACTAGCAATAAAAGCAAAGATGA...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCTTGGTGATTATTTCTTaGATTCGGTTTACAGCTCTG +
Preference number: 5 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSLVIIS*IRFTAL
Trigger: CAGAGCTGTAAACCGAATCAAAGAAATAATCACCAA...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATGCCTTCACCACTCCATaGGTGATTATTTCTTTGATT +
Preference number: 5 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNAFTTP*VIISLI
Trigger: AATCAAAGAAATAATCACCAATGGAGTGGTGAAGGC...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp TCAGTTTTTATTCCAGTCACTGGAAAGGCTGGTGGAGGCATCAACTGCCTGTCCGGCACCAGTTTCAATTaGAATGTGTTGCAAATAAGA +
Preference number: 5 (lower is better)
Translates to: SVFIPVTGKAGGGINCLSGTSFN*NVLQIR
Trigger: TCTTATTTGCAACACATTCAAATTGAAACTGGTGCC...GGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp GAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATCAAGTGCGGCACCAGTTTCAATTaGAATGTGTTGCAAATAAGA +
Preference number: 5 (lower is better)
Translates to: EDPRWPPEQVPESCLIKCGTSFN*NVLQIR
Trigger: TCTTATTTGCAACACATTCAAATTGAAACTGGTGCC...GCACTTGATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CTGAGAGAGACAGATGAGTGTTTCGCGTTTTCTTTGACCCAGTTGGAAACCGGGGGCACCAGTTTCAATTaGAATGTGTTGCAAATAAGA +
Preference number: 5 (lower is better)
Translates to: LRETDECFAFSLTQLETGGTSFN*NVLQIR
Trigger: TCTTATTTGCAACACATTCAAATTGAAACTGGTGCC...CCCGGTTTCCAACTGGGTCAAAGAAAACGCGAAACACTCATCTGTCTCTCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATTTGGTGATTATTTCTTaGATTCGGTTTACAGCTCTG +
Preference number: 5 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNLVIIS*IRFTAL
Trigger: CAGAGCTGTAAACCGAATCAAAGAAATAATCACCAA...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp CATCTTCGAAGATCCAAGATGGCCCCCAGAACAGGTCCCAGAGTCTTGTTTAATGGCACCAGTTTCAATTaGAATGTGTTGCAAATAAGA +
Preference number: 5 (lower is better)
Translates to: HLRRSKMAPRTGPRVLFNGTSFN*NVLQIR
Trigger: TCTTATTTGCAACACATTCAAATTGAAACTGGTGCC...ATTAAACAAGACTCTGGGACCTGTTCTGGGGGCCATCTTGGATCTTCGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp AGGGATGAGGAGCTCTTAGAATTACATGTAAGTATGGAAGGAAGGGTCTTAAAAAGTGCTGGCTGGAGGTaGCACTTGTGTTATCGGATA +
Preference number: 5 (lower is better)
Translates to: RDEELLELHVSMEGRVLKSAGWR*HLCYRI
Trigger: TATCCGATAACACAAGTGCAACCTCCAGCCAGCACT...TTTTAAGACCCTTCCTTCCATACTTACATGTAATTCTAAGAGCTCCTCATCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ACATATGTAGCAATGACTCTGTCCTGGTATCTCACTGGACAAGCACATTTCATCTCATCTTTGCTTTTATaGCTAGTTAGGCTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: TYVAMTLSWYLTGQAHFISSLLL*LVRLLP
Trigger: TGGCAAAAGCCTAACTAGCAATAAAAGCAAAGATGA...GATGAAATGTGCTTGTCCAGTGAGATACCAGGACAGAGTCATTGCTACATATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS-3UTR CAA 90 bp ATAAGTTTGTACAAAGCCAGCCCGCAAAGTATTCAAAAATGTGCAAAAATGACATTGGTGATTATTTCTTaGATTCGGTTTACAGCTCTG +
Preference number: 5 (lower is better)
Translates to: ISLYKASPQSIQKCAKMTLVIIS*IRFTAL
Trigger: CAGAGCTGTAAACCGAATCAAAGAAATAATCACCAA...TGTCATTTTTGCACATTTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029696.11
ENSMUST00000199684.5
CDS CCA 72 bp GGCCGTTGGCGGCAGGAAGAGAAGCGGAGCTGGCGCTaGCTGATCCCATTTGCTGCGGCGCCCGCCAGCGGC +
Preference number: 6 (lower is better)
Translates to: GRWRQEEKRSWR*LIPFAAAPASG
Trigger: GCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCCTGCCGCCAACGGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 72 bp ACCTGGGGCCGTTGGCGGCAGGAAGAGAAGCGGAGCTaGCGCTGGCTGATCCCATTTGCTGCGGCGCCCGCC +
Preference number: 6 (lower is better)
Translates to: TWGRWRQEEKRS*RWLIPFAAAPA
Trigger: GGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCCTGCCGCCAACGGCCCCAGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS TCA 72 bp GTTGGCGGCAGGAAGAGAAGCGGAGCTGGCGCTGGCTaGTCCCATTTGCTGCGGCGCCCGCCAGCGGCAGGA +
Preference number: 6 (lower is better)
Translates to: VGGRKRSGAGAG*SHLLRRPPAAG
Trigger: TCCTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCCTGCCGCCAAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS GCA 72 bp GGAAGAGAAGCGGAGCTGGCGCTGGCTGATCCCATTTaGTGCGGCGCCCGCCAGCGGCAGGATGTGTCGCGC +
Preference number: 6 (lower is better)
Translates to: GREAELALADPI*CGARQRQDVSR
Trigger: GCGCGACACATCCTGCCGCTGGCGGGCGCCGCAGCAAATGGGATCAGCCAGCGCCAGCTCCGCTTCTCTTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 90 bp CTGGCAAGACTCCAGGTGCCAATGAAACAGCTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCTGAACTGGCTGCTGAGGAGGGGGAA +
Preference number: 6 (lower is better)
Translates to: LARLQVPMKQLVALC*VLRREAELAAEEGE
Trigger: TTCCCCCTCCTCAGCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTCTTGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS TCA 72 bp GGCCTTCTCCTCAGTCGTCATGAACCGTCCCCGAGTTaGCACAGCAGCCCCACTAAGCCGACTGATCTCATC +
Preference number: 6 (lower is better)
Translates to: GLLLSRHEPSPS*HSSPTKPTDLI
Trigger: GATGAGATCAGTCGGCTTAGTGGGGCTGCTGTGTCAACTCGGGGACGGTTCATGACGACTGAGGAGAAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 72 bp TGGCACTATGCTTGGTACTCCGTAGGGAGGCTGAACTaGCTGCTGAGGAGGGGGAACAACAGGGTAACCAGA +
Preference number: 6 (lower is better)
Translates to: WHYAWYSVGRLN*LLRRGNNRVTR
Trigger: TCTGGTTACCCTGTTGTTCCCCCTCCTCAGCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CAA 72 bp GATGGTTTCAGCTTCCCTTTGGCCATGAGCATAGCATaGATCTTGGCAGCCACGGCAGCGGCGGCATCCAAG +
Preference number: 6 (lower is better)
Translates to: DGFSFPLAMSIA*ILAATAAAASK
Trigger: CTTGGATGCCGCCGCTGCCGTGGCTGCCAAGATCAATGCTATGCTCATGGCCAAAGGGAAGCTGAAACCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 72 bp CTCCAGGTGCCAATGAAACAGCTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCTGAACTGGCTGCTGAG +
Preference number: 6 (lower is better)
Translates to: LQVPMKQLVALC*VLRREAELAAE
Trigger: CTCAGCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CAA 90 bp AGGAGCACTTATTGGGCTCTGTCCAGTGCTGGCTGGAGGTTGCACTaGTGTTATCGGATACTGTGTTGGCACAGGTGGGACCCCAGTAGG +
Preference number: 6 (lower is better)
Translates to: RSTYWALSSAGWRLH*CYRILCWHRWDPSR
Trigger: CCTACTGGGGTCCCACCTGTGCCAACACAGTATCCGATAACACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAATAAGTGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS GCA 72 bp TGGGTTCAAAAGCCTCTCGGCCTGACGCTGGCTCAATaGAGCCTGAGCCTTTCCCTCGTAGAAAGACTTTGG +
Preference number: 6 (lower is better)
Translates to: WVQKPLGLTLAQ*SLSLSLVERLW
Trigger: CCAAAGTCTTTCTACGAGGGAAAGGCTCAGGCTGCATTGAGCCAGCGTCAGGCCGAGAGGCTTTTGAACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS GCA 72 bp AGACTCCAGGTGCCAATGAAACAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAGGCTGAACTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: RLQVPMKQLVAL*LVLRREAELAA
Trigger: AGCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS GCA 72 bp AGACTCCAGGTGCCAATGAAACAGCTGGTGGCACTATaGTTGGTACTCCGTAGGGAGGCTGAACTGGCTGGT +
Preference number: 6 (lower is better)
Translates to: RLQVPMKQLVAL*LVLRREAELAG
Trigger: ACCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS CCA 72 bp GCCAGGGGCCTGAAGCTTCTCGGCCGCATTCTGAGATaGTTTCAGCTTCCCTTTGGCCATGAGCATAGCATT +
Preference number: 6 (lower is better)
Translates to: ARGLKLLGRILR*FQLPFGHEHSI
Trigger: AATGCTATGCTCATGGCCAAAGGGAAGCTGAAACCATCTCAGAATGCGGCCGAGAAGCTTCAGGCCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 90 bp CTGGCAAGACTCCAGGTGCCAATGAAACAGCTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCTGAACTGGCTGGTAATGGTACAGCA +
Preference number: 6 (lower is better)
Translates to: LARLQVPMKQLVALC*VLRREAELAGNGTA
Trigger: TGCTGTACCATTACCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAGTCTTGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS CAA 72 bp TATTGGGCTCTGTCCAGTGCTGGCTGGAGGTTGCACTaGTGTTATCGGATACTGTGTTGGCACAGGTGGGAC +
Preference number: 6 (lower is better)
Translates to: YWALSSAGWRLH*CYRILCWHRWD
Trigger: GTCCCACCTGTGCCAACACAGTATCCGATAACACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 72 bp CTCCAGGTGCCAATGAAACAGCTGGTGGCACTATGCTaGGTACTCCGTAGGGAGGCTGAACTGGCTGGTAAT +
Preference number: 6 (lower is better)
Translates to: LQVPMKQLVALC*VLRREAELAGN
Trigger: ATTACCAGCCAGTTCAGCCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTGGCACCTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198078.2
CDS GCA 72 bp GCACTTATTGGGCTCTGTCCAGTGCTGGCTGGAGGTTaGACTTGTGTTATCGGATACTGTGTTGGCACAGGT +
Preference number: 6 (lower is better)
Translates to: ALIGLCPVLAGG*TCVIGYCVGTG
Trigger: ACCTGTGCCAACACAGTATCCGATAACACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAATAAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 72 bp AGCACTTATTGGGCTCTGTCCAGTGCTGGCTGGAGGTaGCACTTGTGTTATCGGATACTGTGTTGGCACAGG +
Preference number: 6 (lower is better)
Translates to: STYWALSSAGWR*HLCYRILCWHR
Trigger: CCTGTGCCAACACAGTATCCGATAACACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAATAAGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 90 bp AATAAAAGGAGCACTTATTGGGCTCTGTCCAGTGCTGGCTGGAGGTaGCACTTGTGTTATCGGATACTGTGTTGGCACAGGTGGGACCCC +
Preference number: 6 (lower is better)
Translates to: NKRSTYWALSSAGWR*HLCYRILCWHRWDP
Trigger: GGGGTCCCACCTGTGCCAACACAGTATCCGATAACACAAGTGCAACCTCCAGCCAGCACTGGACAGAGCCCAATAAGTGCTCCTTTTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS TCA 72 bp GTGTCAGCAGGTTTCTGCATGTCAGAGGCACGTCATTaGTTTCTACTTCAGCCACCACCAGGTCATCTTTGC +
Preference number: 6 (lower is better)
Translates to: VSAGFCMSEARH*FLLQPPPGHLC
Trigger: GCAAAGATGACCTGGTGGTGGCTGAAGTAGAAATCAATGACGTGCCTCTGACATGCAGAAACCTGCTGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 72 bp CTGGTGATAGACAGTGACTGTTGCACCATTGAAAGTTaGACTTGTCCCTGTGGCAGCCTTCACCACTCCATT +
Preference number: 6 (lower is better)
Translates to: LVIDSDCCTIES*TCPCGSLHHSI
Trigger: AATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAACTTTCAATGGTGCAACAGTCACTGTCTATCACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CCA 72 bp GAGGGGGAACAACAGGGTAACCAGACTGATAGCCATTaGATGGATAATATGGTGGTTGAGGAGGGATACTAC +
Preference number: 6 (lower is better)
Translates to: EGEQQGNQTDSH*MDNMVVEEGYY
Trigger: GTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTTCCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CAA 72 bp GTTGGACTTGTCCCTGTGGCAGCCTTCACCACTCCATaGGTGATTATTTCTTTGATTCGGTTTACAGCTCTG +
Preference number: 6 (lower is better)
Translates to: VGLVPVAAFTTP*VIISLIRFTAL
Trigger: CAGAGCTGTAAACCGAATCAAAGAAATAATCACCAATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 90 bp AACAGGGTAACCAGACTGATAGCCATTGGATGGATAATATGGTGGTaGAGGAGGGATACTACTTATAGCAGAGGGTTGTGTATAGCCTGG +
Preference number: 6 (lower is better)
Translates to: NRVTRLIAIGWIIWW*RRDTTYSRGLCIAW
Trigger: CCAGGCTATACACAACCCTCTGCTATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CCA 72 bp AGGGTAACCAGACTGATAGCCATTGGATGGATAATATaGTGGTTGAGGAGGGATACTACTTATAGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: RVTRLIAIGWII*WLRRDTTYSRG
Trigger: CCCTCTGCTATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CCA 72 bp GGGAACAACAGGGTAACCAGACTGATAGCCATTGGATaGATAATATGGTGGTTGAGGAGGGATACTACTTAT +
Preference number: 6 (lower is better)
Translates to: GNNRVTRLIAIG*IIWWLRRDTTY
Trigger: ATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CAA 72 bp GTGGCAGCCTTCACCACTCCATTGGTGATTATTTCTTaGATTCGGTTTACAGCTCTGTCTACTAATTCCCGT +
Preference number: 6 (lower is better)
Translates to: VAAFTTPLVIIS*IRFTALSTNSR
Trigger: ACGGGAATTAGTAGACAGAGCTGTAAACCGAATCAAAGAAATAATCACCAATGGAGTGGTGAAGGCTGCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5
CDS CAA 72 bp ACCAGACTGATAGCCATTGGATGGATAATATGGTGGTaGAGGAGGGATACTACTTATAGCAGAGGGTTGTGT +
Preference number: 6 (lower is better)
Translates to: TRLIAIGWIIWW*RRDTTYSRGLC
Trigger: ACACAACCCTCTGCTATAAGTAGTATCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000199684.5
CDS CAA 90 bp CCATTGAAAGTTGGACTTGTCCCTGTGGCAGCCTTCACCACTCCATaGGTGATTATTTCTTTGATTCGGTTTACAGCTCTGTCTACTAAT +
Preference number: 6 (lower is better)
Translates to: PLKVGLVPVAAFTTP*VIISLIRFTALSTN
Trigger: ATTAGTAGACAGAGCTGTAAACCGAATCAAAGAAATAATCACCAATGGAGTGGTGAAGGCTGCCACAGGGACAAGTCCAACTTTCAATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029696.11
ENSMUST00000198042.5
ENSMUST00000198078.2
ENSMUST00000199684.5