Pregenerated sensors for KHDC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092622Ensembl transcript IDs: ENSMUST00000034737.13, ENSMUST00000167514.2, ENSMUST00000172578.2, ENSMUST00000173734.9
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCTGTGTACCATCTATCCTaGCTCACACCAGAGATGCAT | + |
|
Preference number: 2 (lower is better) Translates to: PIPRAKTRKKDEGSLRQAVYHLS*LTPEMH Trigger: ATGCATCTCTGGTGTGAGCCAGGATAGATGGTACAC...AGCCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| 3UTR-3UTR CCA 90 bp | CGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCTGCCTGCCTTTAGGTTCTaGATTTGCAGACGTGTACCA | + |
|
Preference number: 2 (lower is better) Translates to: RFLGQKPERKMKGVLGRLPAFRF*ICRRVP Trigger: TGGTACACGTCTGCAAATCCAGAACCTAAAGGCAGG...CAGCCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| 3UTR GCA 72 bp | CAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTaGAGACGTGTACCATCTATCCTGGCTCACACCAGA | + |
|
Preference number: 3 (lower is better) Translates to: QPKLTPAFRFWI*RRVPSILAHTR Trigger: TCTGGTGTGAGCCAGGATAGATGGTACACGTCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR TCA 90 bp | TTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCTGAGGTGCACCGGAGCGGGCTaGGGGGCAGCCTCGCGGACC | + |
|
Preference number: 4 (lower is better) Translates to: FLGQKPERKMKGVLGRLRCTGAG*GAASRT Trigger: GGTCCGCGAGGCTGCCCCTCAGCCCGCTCCGGTGCA...CCTCAGCCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR GCA 90 bp | CATTGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGAGCTGGGTGGCCGCCTTaGGGACCTTCCCGGGAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: HCLTQPKLTPAFRFWICRAGWPP*GPSREP Trigger: CGGCTCCCGGGAAGGTCCGCAAGGCGGCCACCCAGC...TCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR GCA 90 bp | TGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGACGTGCCTCGCTGACCTCCTaGACGGGAGCCTGCTCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: CLTQPKLTPAFRFWICRRASLTS*TGACSV Trigger: CACCGAGCAGGCTCCCGTGCAGGAGGTCAGCGAGGC...ACGTCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR TCA 90 bp | TTCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGTGCACGGAAGCCTGCTaGGGGGCAGCCTCGCGGACC | + |
|
Preference number: 4 (lower is better) Translates to: FPIPRAKTRKKDEGSLRQCTEAC*GAASRT Trigger: GGTCCGCGAGGCTGCCCCTCAGCAGGCTTCCGTGCA...CTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | GCCTTTAGGTTCTGGATTTGCAGACGTGTACCATCTATCCTGGCTCACACCAGATTCACAGGAGCCAACTaGGTGGCCGCCTCGCGGACC | + |
|
Preference number: 4 (lower is better) Translates to: AFRFWICRRVPSILAHTRFTGAN*VAASRT Trigger: GGTCCGCGAGGCGGCCACCCAGTTGGCTCCTGTGAA...TCTGGTGTGAGCCAGGATAGATGGTACACGTCTGCAAATCCAGAACCTAAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR TCA 90 bp | TTAGGTTCTGGATTTGCAGACGTGTACCATCTATCCTGGCTCACACCAGAGATGCTGGTGGGCCTCCCCTaGAGTGTGCTGGGCAAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LGSGFADVYHLSWLTPEMLVGLP*SVLGKG Trigger: GCCTTTGCCCAGCACACTTCAGGGGAGGCCCACCAG...CATCTCTGGTGTGAGCCAGGATAGATGGTACACGTCTGCAAATCCAGAACCTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR GCA 90 bp | CATTGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGATCCACGGGAGACAGCTaGGTGGCAGCCTCACGAACC | + |
|
Preference number: 4 (lower is better) Translates to: HCLTQPKLTPAFRFWICRSTGDS*VAASRT Trigger: GGTTCGTGAGGCTGCCACGCAGCTGTCTCCCGTGGA...TCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TTAGGTTCTGGATTTGCAGACGTGTACCATCTATCCTGGCTCACACCAGAGATGTTCACGGGAGCAGGCTaGGTGGCCGTCTCAGGGACC | + |
|
Preference number: 4 (lower is better) Translates to: LGSGFADVYHLSWLTPEMFTGAG*VAVSGT Trigger: GGTCCCTGAGACGGCCACCCAGCCTGCTCCCGTGAA...CATCTCTGGTGTGAGCCAGGATAGATGGTACACGTCTGCAAATCCAGAACCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR TCA 90 bp | TTAACACAATGGGGAAACAAAAACAGCTCTACTCTGTTCTTCCCGATTCCTAGGCGGTGGCAGCCTCGCTaGCCTCCTGCACGGGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LTQWGNKNSSTLFFPIPRRWQPR*PPAREP Trigger: AGGCTCCCGTGCAGGAGGTCAGCGAGGCTGCCACCG...CCTAGGAATCGGGAAGAACAGAGTAGAGCTGTTTTTGTTTCCCCATTGTGTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGTTCACGGGAGCAGGCTaGGTGGCAGCCTTATGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SRFLGQKPERKMKGVLGRFTGAG*VAALWA Trigger: GGCCCATAAGGCTGCCACCCAGCCTGCTCCCGTGAA...CCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TTCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGCGGGAGCAGGCTGGGTaGCCGTCTCAGGGACCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: FPIPRAKTRKKDEGSLRQREQAG*PSQGPS Trigger: TGAAGGTCCCTGAGACGGCCACCCAGCCTGCTCCCG...CTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGAACTGGGTGGCCTCCTaGCAAACCTGCACCGGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SRFLGQKPERKMKGVLGRNWVAS*QTCTGA Trigger: GGCTCCGGTGCAGGTTTGCCAGGAGGCCACCCAGTT...CCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR GCA 90 bp | ATGAAGGGAGTCTTAGGCAGGCTGAGGTTTAAGATCATTGCCTTACTCAGCCCAAGCCAACTGGGTGGCTaGCTTGCGGACCTTCACAGG | + |
|
Preference number: 4 (lower is better) Translates to: MKGVLGRLRFKIIALLSPSQLGG*LADLHR Trigger: CCTGTGAAGGTCCGCAAGGCAGCCACCCAGTTGGCT...TGGGCTGAGTAAGGCAATGATCTTAAACCTCAGCCTGCCTAAGACTCCCTTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | CGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCTGTGCCCATTGGCAACCTaGTGGGCCTCCCCTGAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: RFLGQKPERKMKGVLGRLCPLAT*WASPEV Trigger: CACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCA...CAGCCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR GCA 90 bp | TGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGACGTACATCTAGAGAATGCTaGCCGGTGGCAGTCTCACAG | + |
|
Preference number: 4 (lower is better) Translates to: CLTQPKLTPAFRFWICRRTSREC*PVAVSQ Trigger: CTGTGAGACTGCCACCGGGCAGCATTCTCTAGATGT...ACGTCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TTCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGTTCACAGGAGCCAACTaGGTGGCTGCCTTGCGGACC | + |
|
Preference number: 4 (lower is better) Translates to: FPIPRAKTRKKDEGSLRQFTGAN*VAALRT Trigger: GGTCCGCAAGGCAGCCACCCAGTTGGCTCCTGTGAA...CTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGACGTACCTCAGGACACTTCTaGGACAAGGCCCTAGAGACA | + |
|
Preference number: 4 (lower is better) Translates to: CLTQPKLTPAFRFWICRRTSGHF*DKALET Trigger: TGTCTCTAGGGCCTTGTCCCAGAAGTGTCCTGAGGT...ACGTCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCTGAGGTCTCACAGACTTCAATaGGAGACTGCCCATTGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: FLGQKPERKMKGVLGRLRSHRLQ*ETAHWQ Trigger: TTGCCAATGGGCAGTCTCCCATTGAAGTCTGTGAGA...CCTCAGCCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | CCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCTTTCCCAGGCATCCCTTaGAGGCTGAACTATGACATA | + |
|
Preference number: 4 (lower is better) Translates to: PIPRAKTRKKDEGSLRQAFPGIP*RLNYDI Trigger: TATGTCATAGTTCAGCCTCCAAGGGATGCCTGGGAA...AGCCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR GCA 90 bp | CATTGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGATTTCCATCAGTTTCATaGGGCAATAGTGAGCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: HCLTQPKLTPAFRFWICRFPSVS*GNSEPD Trigger: ATCTGGCTCACTATTGCCGCATGAAACTGATGGAAA...TCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGGCATAGATTCAAGATGTaGGATGTGCTCTCCATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SRFLGQKPERKMKGVLGRHRFKM*DVLSIL Trigger: AAGGATGGAGAGCACATCCCACATCTTGAATCTATG...CCTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CCA 90 bp | TTAACACAATGGGGAAACAAAAACAGCTCTACTCTGTTCTTCCCGATTCCTAGGCACGTACAGTCTTTTTaGATCTTCCAGGCATTCGAC | + |
|
Preference number: 4 (lower is better) Translates to: LTQWGNKNSSTLFFPIPRHVQSF*IFQAFD Trigger: GTCGAATGCCTGGAAGATCCAAAAAGACTGTACGTG...CCTAGGAATCGGGAAGAACAGAGTAGAGCTGTTTTTGTTTCCCCATTGTGTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR TCA 90 bp | ACATTTAACACAATGGGGAAACAAAAACAGCTCTACTCTGTTCTTCCCGATTCCCATCCTTACCAAACATaGTTTCCAGTAGCCGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: TFNTMGKQKQLYSVLPDSHPYQT*FPVAEV Trigger: AACCTCGGCTACTGGAAATCATGTTTGGTAAGGATG...GGAATCGGGAAGAACAGAGTAGAGCTGTTTTTGTTTCCCCATTGTGTTAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS GCA 90 bp | TGGCCTCCTGGCAAACCTGCACCGGAGCCGGCTGGGTGGCCGCCTTaGGGACCTTCCCGGGAGCCGGCCGGGTGGCAGCCTCGCGGACCG | + |
|
Preference number: 5 (lower is better) Translates to: WPPGKPAPEPAGWPP*GPSREPAGWQPRGP Trigger: CGGTCCGCGAGGCTGCCACCCGGCCGGCTCCCGGGAAGGTCCGCAAGGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCCAGGAGGCCA 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 90 bp | GGAGCCTGCTCGGTGGCAGCCTCGCTGACCTCCTGCACGGGAGCCTaGTCGGTGGCAGCCTCGCGGACCTCCTGCACGGGAGCCTGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: GACSVAASLTSCTGA*SVAASRTSCTGACS Trigger: CGAGCAGGCTCCCGTGCAGGAGGTCCGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAGCGAGGCTGCCACCGAGCAGGCTCC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CCA 90 bp | GTGGCCGCCTCGCGGACCTTCACGGGAGCCAACTGGGTGGCCTCCTaGCAAACCTGCACCGGAGCCGGCTGGGTGGCCGCCTTGCGGACC | + |
|
Preference number: 5 (lower is better) Translates to: VAASRTFTGANWVAS*QTCTGAGWVAALRT Trigger: GGTCCGCAAGGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCCAGGAGGCCACCCAGTTGGCTCCCGTGAAGGTCCGCGAGGCGGCCAC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 90 bp | TCGCGGACCTTCACGGGAGCCAACTGGGTGGCCTCCTGGCAAACCTaGACCGGAGCCGGCTGGGTGGCCGCCTTGCGGACCTTCCCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: SRTFTGANWVASWQT*TGAGWVAALRTFPG Trigger: TCCCGGGAAGGTCCGCAAGGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCCAGGAGGCCACCCAGTTGGCTCCCGTGAAGGTCCGCGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 90 bp | ACCGCCTGCACGGAAGCCTGCTCGGTGGCAGCCTCGTTGACCTCCTaGACGGGAGCCTGCTCGGTGGCAGCCTCGCTGACCTCCTGCACG | + |
|
Preference number: 5 (lower is better) Translates to: TACTEACSVAASLTS*TGACSVAASLTSCT Trigger: CGTGCAGGAGGTCAGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAACGAGGCTGCCACCGAGCAGGCTTCCGTGCAGGCGGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 90 bp | CTGGGTGGCCGCCTCGTGGACCTTCACAGGAGCCAACTGGGTGGCTaGCTTGCGGACCTTCACAGGAGCCAACTGGGTGGCCGCCTCGCG | + |
|
Preference number: 5 (lower is better) Translates to: LGGRLVDLHRSQLGG*LADLHRSQLGGRLA Trigger: CGCGAGGCGGCCACCCAGTTGGCTCCTGTGAAGGTCCGCAAGGCAGCCACCCAGTTGGCTCCTGTGAAGGTCCACGAGGCGGCCACCCAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS TCA 90 bp | GCCTCCCCTGAAGTGTGCTGGGCAAAGGCTTCATCAGCCTTCACCTaGGCCAACTGGCTAGTATCAGTGGCCTCCACGGGAGACAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: ASPEVCWAKASSAFT*ANWLVSVASTGDSC Trigger: GCAGCTGTCTCCCGTGGAGGCCACTGATACTAGCCAGTTGGCTCAGGTGAAGGCTGATGAAGCCTTTGCCCAGCACACTTCAGGGGAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 90 bp | GTGGCAGTCTCACAGACTTCAATGGGAGACTGCCCATTGGCAACCTaGTGGGCCTCCCCTGAAGTGTGCTGGGCAAAGGCTTCATCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: VAVSQTSMGDCPLAT*WASPEVCWAKASSA Trigger: GGCTGATGAAGCCTTTGCCCAGCACACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCCATTGAAGTCTGTGAGACTGCCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 90 bp | GCAGTCTCACAGACTTCAATGGGAGACTGCCCATTGGCAACCTGGTaGGCCTCCCCTGAAGTGTGCTGGGCAAAGGCTTCATCAGCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: AVSQTSMGDCPLATW*ASPEVCWAKASSAF Trigger: GAAGGCTGATGAAGCCTTTGCCCAGCACACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCCATTGAAGTCTGTGAGACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 90 bp | TCCAAACAACTCTGGGTCTCCCACTCAAAAACCTCAGGACACTTCTaGGACAAGGCCCTAGAGACATCTAGAGAATGCTGCCCGGTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SKQLWVSHSKTSGHF*DKALETSRECCPVA Trigger: TGCCACCGGGCAGCATTCTCTAGATGTCTCTAGGGCCTTGTCCCAGAAGTGTCCTGAGGTTTTTGAGTGGGAGACCCAGAGTTGTTTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS-3UTR CAA 90 bp | ACATTTAACACAATGGGGAAACAAAAACAGCTCTACTCTGTTCTTCCCGATTCCTCGGTGGCAGCCTCGTaGACCTCCTGCACGGGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: TFNTMGKQKQLYSVLPDSSVAAS*TSCTGA Trigger: GGCTCCCGTGCAGGAGGTCAACGAGGCTGCCACCGA...GGAATCGGGAAGAACAGAGTAGAGCTGTTTTTGTTTCCCCATTGTGTTAAATGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CAA 90 bp | TGCCTTACTCAGCCCAAGCTAACCCCTGCCTTTAGGTTCTGGATTTGCAGACGTAACCACTTGGGCAACTaGGGCTCTCCAATAATTTCA | + |
|
Preference number: 5 (lower is better) Translates to: CLTQPKLTPAFRFWICRRNHLGN*GSPIIS Trigger: TGAAATTATTGGAGAGCCCAAGTTGCCCAAGTGGTT...ACGTCTGCAAATCCAGAACCTAAAGGCAGGGGTTAGCTTGGGCTGAGTAAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS-3UTR CAA 90 bp | TTCCCGATTCCTAGGGCAAAAACCAGAAAGAAAGATGAAGGGAGTCTTAGGCAGCCACGTACAGTCTTTTaGGATCTTCCAGGCATTCGA | + |
|
Preference number: 5 (lower is better) Translates to: FPIPRAKTRKKDEGSLRQPRTVF*DLPGIR Trigger: TCGAATGCCTGGAAGATCCAAAAAGACTGTACGTGG...CTGCCTAAGACTCCCTTCATCTTTCTTTCTGGTTTTTGCCCTAGGAATCGGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034737.13 |
||
| CDS GCA 72 bp | GGCAAACCTGCACCGGAGCCGGCTGGGTGGCCGCCTTaGGGACCTTCCCGGGAGCCGGCCGGGTGGCAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: GKPAPEPAGWPP*GPSREPAGWQP Trigger: AGGCTGCCACCCGGCCGGCTCCCGGGAAGGTCCGCAAGGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CAA 72 bp | TGGCAAACCTGCACCGGAGCCGGCTGGGTGGCCGCCTaGCGGACCTTCCCGGGAGCCGGCCGGGTGGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: WQTCTGAGWVAA*RTFPGAGRVAA Trigger: GGCTGCCACCCGGCCGGCTCCCGGGAAGGTCCGCAAGGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCCA 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS TCA 72 bp | GCAGCCTCGCGGACCTCCTCCTGCACGGAAGCCTGCTaGGGGGCAGCCTCGCGGACCTCCTGCACCGGAGCG | + |
|
Preference number: 6 (lower is better) Translates to: AASRTSSCTEAC*GAASRTSCTGA Trigger: CGCTCCGGTGCAGGAGGTCCGCGAGGCTGCCCCTCAGCAGGCTTCCGTGCAGGAGGAGGTCCGCGAGGCTGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 72 bp | ACGGGAGCCTGCTCGGTGGCAGCCTCGCTGACCTCCTaGACGGGAGCCTGCTCGGTGGCAGCCTCGCGGACC | + |
|
Preference number: 6 (lower is better) Translates to: TGACSVAASLTS*TGACSVAASRT Trigger: GGTCCGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAGCGAGGCTGCCACCGAGCAGGCTCCCGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CAA 90 bp | GCCTCGCGGACCGCCTGCACGGAAGCCTGCTCGGTGGCAGCCTCGTaGACCTCCTGCACGGGAGCCTGCTCGGTGGCAGCCTCGCTGACC | + |
|
Preference number: 6 (lower is better) Translates to: ASRTACTEACSVAAS*TSCTGACSVAASLT Trigger: GGTCAGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAACGAGGCTGCCACCGAGCAGGCTTCCGTGCAGGCGGTCCGCGAGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 72 bp | TCGGTGGCAGCCTCGCTGACCTCCTGCACGGGAGCCTaGTCGGTGGCAGCCTCGCGGACCTCCTGCACGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SVAASLTSCTGA*SVAASRTSCTG Trigger: TCCCGTGCAGGAGGTCCGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAGCGAGGCTGCCACCGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | GGGCAGCCTCGCGGACCTTCACGGGAGCAGGCTGGGTaGCCGTCTCAGGGACCTTCACGGAAGCGGGCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: GQPRGPSREQAG*PSQGPSRKRAE Trigger: CTCGGCCCGCTTCCGTGAAGGTCCCTGAGACGGCCACCCAGCCTGCTCCCGTGAAGGTCCGCGAGGCTGCCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | CAGCCTCGCGGACCTCCTGCACGGGAGCCTGCTCGGTaGCAGCCTCGCGGACCTCCTCCTGCACGGAAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: QPRGPPAREPAR*QPRGPPPARKP Trigger: AGGCTTCCGTGCAGGAGGAGGTCCGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCCGCGAGGCTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | TCGCGGACCTTCACGGGAGCCAACTGGGTGGCCTCCTaGCAAACCTGCACCGGAGCCGGCTGGGTGGCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: SRTFTGANWVAS*QTCTGAGWVAA Trigger: GGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCCAGGAGGCCACCCAGTTGGCTCCCGTGAAGGTCCGCGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 72 bp | TTCACGGGAGCCAACTGGGTGGCCTCCTGGCAAACCTaGACCGGAGCCGGCTGGGTGGCCGCCTTGCGGACC | + |
|
Preference number: 6 (lower is better) Translates to: FTGANWVASWQT*TGAGWVAALRT Trigger: GGTCCGCAAGGCGGCCACCCAGCCGGCTCCGGTGCAGGTTTGCCAGGAGGCCACCCAGTTGGCTCCCGTGAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | CGAGGGGCAGCCTCGCGGACCTTCACGGGAGCAGGCTaGGTGGCAGCCTTATGGGCCGCCATACGACGACGC | + |
|
Preference number: 6 (lower is better) Translates to: RGAASRTFTGAG*VAALWAAIRRR Trigger: GCGTCGTCGTATGGCGGCCCATAAGGCTGCCACCCAGCCTGCTCCCGTGAAGGTCCGCGAGGCTGCCCCTCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000173734.9 |
||
| CDS CAA 72 bp | ACCGCCTGCACGGAAGCCTGCTCGGTGGCAGCCTCGTaGACCTCCTGCACGGGAGCCTGCTCGGTGGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: TACTEACSVAAS*TSCTGACSVAA Trigger: GGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAACGAGGCTGCCACCGAGCAGGCTTCCGTGCAGGCGGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 72 bp | TCGGTGGCAGCCTCGTTGACCTCCTGCACGGGAGCCTaGTCGGTGGCAGCCTCGCTGACCTCCTGCACGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SVAASLTSCTGA*SVAASLTSCTG Trigger: TCCCGTGCAGGAGGTCAGCGAGGCTGCCACCGAGCAGGCTCCCGTGCAGGAGGTCAACGAGGCTGCCACCGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | CGGACCTTCACGGGAGCAGGCTGGGTGGCAGCCTTATaGGCCGCCATACGACGACGCTCAACTCCAGCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: RTFTGAGWVAAL*AAIRRRSTPAS Trigger: GGAGGCTGGAGTTGAGCGTCGTCGTATGGCGGCCCATAAGGCTGCCACCCAGCCTGCTCCCGTGAAGGTCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS GCA 72 bp | CGCCTCGTGGACCTTCACAGGAGCCAACTGGGTGGCTaGCTTGCGGACCTTCACAGGAGCCAACTGGGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: RLVDLHRSQLGG*LADLHRSQLGG Trigger: GCCACCCAGTTGGCTCCTGTGAAGGTCCGCAAGGCAGCCACCCAGTTGGCTCCTGTGAAGGTCCACGAGGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | TGGGTGGCCGCCTCGTGGACCTTCACAGGAGCCAACTaGGTGGCTGCCTTGCGGACCTTCACAGGAGCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: WVAASWTFTGAN*VAALRTFTGAN Trigger: GTTGGCTCCTGTGAAGGTCCGCAAGGCAGCCACCCAGTTGGCTCCTGTGAAGGTCCACGAGGCGGCCACCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||
| CDS TCA 72 bp | GGGAGACTGCCCATTGGCAACCTGGTGGGCCTCCCCTaGAGTGTGCTGGGCAAAGGCTTCATCAGCCTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: GRLPIGNLVGLP*SVLGKGFISLH Trigger: GTGAAGGCTGATGAAGCCTTTGCCCAGCACACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS GCA 72 bp | TGCCCGGTGGCAGTCTCACAGACTTCAATGGGAGACTaGCCATTGGCAACCTGGTGGGCCTCCCCTGAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: CPVAVSQTSMGD*PLATWWASPEV Trigger: CACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCCATTGAAGTCTGTGAGACTGCCACCGGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 72 bp | GAGAATGCTGCCCGGTGGCAGTCTCACAGACTTCAATaGGAGACTGCCCATTGGCAACCTGGTGGGCCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: ENAARWQSHRLQ*ETAHWQPGGPP Trigger: GGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCCATTGAAGTCTGTGAGACTGCCACCGGGCAGCATTCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 72 bp | CAGACTTCAATGGGAGACTGCCCATTGGCAACCTGGTaGGCCTCCCCTGAAGTGTGCTGGGCAAAGGCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: QTSMGDCPLATW*ASPEVCWAKAS Trigger: TGAAGCCTTTGCCCAGCACACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCCATTGAAGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 72 bp | TCACAGACTTCAATGGGAGACTGCCCATTGGCAACCTaGTGGGCCTCCCCTGAAGTGTGCTGGGCAAAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: SQTSMGDCPLAT*WASPEVCWAKA Trigger: AGCCTTTGCCCAGCACACTTCAGGGGAGGCCCACCAGGTTGCCAATGGGCAGTCTCCCATTGAAGTCTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS TCA 72 bp | GAAGTGTGCTGGGCAAAGGCTTCATCAGCCTTCACCTaGGCCAACTGGCTAGTATCAGTGGCCTCCACGGGA | + |
|
Preference number: 6 (lower is better) Translates to: EVCWAKASSAFT*ANWLVSVASTG Trigger: TCCCGTGGAGGCCACTGATACTAGCCAGTTGGCTCAGGTGAAGGCTGATGAAGCCTTTGCCCAGCACACTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS CCA 72 bp | CTCTGGGTCTCCCACTCAAAAACCTCAGGACACTTCTaGGACAAGGCCCTAGAGACATCTAGAGAATGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LWVSHSKTSGHF*DKALETSRECC Trigger: GCAGCATTCTCTAGATGTCTCTAGGGCCTTGTCCCAGAAGTGTCCTGAGGTTTTTGAGTGGGAGACCCAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 |
||
| CDS TCA 72 bp | CAAGATGTGGGATGTGCTCTCCATCCTTACCAAACATaGTTTCCAGTAGCCGAGGTTCCACGTACAGTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: QDVGCALHPYQT*FPVAEVPRTVF Trigger: AAAGACTGTACGTGGAACCTCGGCTACTGGAAATCATGTTTGGTAAGGATGGAGAGCACATCCCACATCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000172578.2 ENSMUST00000173734.9 |
||
| CDS GCA 72 bp | ATCAGGGTGTGCAACATAGATTCAAGATGTGGGATGTaGTCTCCATCCTTACCAAACATGATTTCCAGTAGC | + |
|
Preference number: 6 (lower is better) Translates to: IRVCNIDSRCGM*SPSLPNMISSS Trigger: GCTACTGGAAATCATGTTTGGTAAGGATGGAGAGCACATCCCACATCTTGAATCTATGTTGCACACCCTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000172578.2 ENSMUST00000173734.9 |
||
| CDS CAA 72 bp | TCTTCCAGGCATTCGACATGGAACCACTTGGGCAACTaGGGCTCTCCAATAATTTCAAATAAGGTACCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: SSRHSTWNHLGN*GSPIISNKVPC Trigger: ACAAGGTACCTTATTTGAAATTATTGGAGAGCCCAAGTTGCCCAAGTGGTTCCATGTCGAATGCCTGGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000172578.2 ENSMUST00000173734.9 |
||
| CDS CAA 90 bp | ACGTACAGTCTTTTTGGATCTTCCAGGCATTCGACATGGAACCACTaGGGCAACTTGGGCTCTCCAATAATTTCAAATAAGGTACCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: TYSLFGSSRHSTWNH*GNLGSPIISNKVPC Trigger: ACAAGGTACCTTATTTGAAATTATTGGAGAGCCCAAGTTGCCCAAGTGGTTCCATGTCGAATGCCTGGAAGATCCAAAAAGACTGTACGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000172578.2 ENSMUST00000173734.9 |
||
| CDS CCA 72 bp | CACATGTATCAGGGTGTGCAACATAGATTCAAGATGTaGGATGTGCTCTCCATCCTTACCAAACATGATTTC | + |
|
Preference number: 6 (lower is better) Translates to: HMYQGVQHRFKM*DVLSILTKHDF Trigger: GAAATCATGTTTGGTAAGGATGGAGAGCACATCCCACATCTTGAATCTATGTTGCACACCCTGATACATGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034737.13 ENSMUST00000167514.2 ENSMUST00000173734.9 |
||