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Pregenerated sensors for KHDC1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041722

Ensembl transcript IDs: ENSMUST00000070223.6

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTAGGTTGGATTAGTGTAGACAAAAGAGACCAACATCAAAGGCATTaGTGTCACAGATCACCTTTGCCAGAATCTTATACCAGCAAGAGT +
Preference number: 1 (lower is better)
Translates to: LGWISVDKRDQHQRH*CHRSPLPESYTSKS
Trigger: ACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTGGTCTCTTTTGTCTACACTAATCCAACCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR TCA 90 bp ATTTGCTACATTAAAATGTTTAAAGTGTTGTGGGTCCTAAGTTTATaGTCTGGAGACCCAGCATTGCCTATACCAGAGAGAACTACTGGA +
Preference number: 1 (lower is better)
Translates to: ICYIKMFKVLWVLSL*SGDPALPIPERTTG
Trigger: TCCAGTAGTTCTCTCTGGTATAGGCAATGCTGGGTCTCCAGATCATAAACTTAGGACCCACAACACTTTAAACATTTTAATGTAGCAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR GCA 90 bp AGATCACCTTTGCCAGAATCTTATACCAGCAAGAGTGTAATCTTATaGCTTACAATGCTAGAGATTGCCAATATGGTCCACAATTCAAAG +
Preference number: 1 (lower is better)
Translates to: RSPLPESYTSKSVIL*LTMLEIANMVHNSK
Trigger: CTTTGAATTGTGGACCATATTGGCAATCTCTAGCATTGTAAGGCATAAGATTACACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR CCA 90 bp CAGATGGACAAAATCGAAAGTCAATGTCCATTGCTGATAGGAACATaGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCA +
Preference number: 1 (lower is better)
Translates to: QMDKIESQCPLLIGT*ICQAPKSLRHIVKA
Trigger: TGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACATTGACTTTCGATTTTGTCCATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR GCA 90 bp ATCGAAAGTCAATGTCCATTGCTGATAGGAACATGGATATGTCAAGCACCTAAACCAGACCTTGGAATCTaGCTTGCCCAGAAATTCTAC +
Preference number: 2 (lower is better)
Translates to: IESQCPLLIGTWICQAPKPDLGI*LAQKFY
Trigger: GTAGAATTTCTGGGCAAGGCAGATTCCAAGGTCTGG...TTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACATTGACTTTCGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR CAA 90 bp GACAAAAGAGACCAACATCAAAGGCATTGCTGTCACAGATCACCTTaGCCAGAATCTTATACCAGCAAGAGTGTAATCTTATGCCTTACA +
Preference number: 2 (lower is better)
Translates to: DKRDQHQRHCCHRSP*PESYTSKSVILCLT
Trigger: TGTAAGGCATAAGATTACACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTGGTCTCTTTTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR TCA 90 bp ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTATCAGACACTCCCAGTaGAACAGCCTAATGTGCTTC +
Preference number: 2 (lower is better)
Translates to: TWICQAPKSLRHIVKARSIRHSQ*NSLMCF
Trigger: GAAGCACATTAGGCTGTTTCACTGGGAGTGTCTGAT...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR GCA 90 bp AATACAACTTGCTTTAATCAGACACTCCCAGTGAAACAGCCTAATGTGCTTCTACAACATCAAAGGCATTaGTGTCACAGATCACCTTTG +
Preference number: 2 (lower is better)
Translates to: NTTCFNQTLPVKQPNVLLQHQRH*CHRSPL
Trigger: CAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTG...TAGAAGCACATTAGGCTGTTTCACTGGGAGTGTCTGATTAAAGCAAGTTGTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR GCA 90 bp ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTCCTTGGAATCTGCCTTaGCCAGAAATTCTACCACTA +
Preference number: 2 (lower is better)
Translates to: TWICQAPKSLRHIVKARSPWNLP*PEILPL
Trigger: TAGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGG...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR CAA 90 bp TGTCCATTGCTGATAGGAACATGGATATGTCAAGCACCTAAAAGTTaGAGACACATTGTAAAGGCAAGATCTTCCTCTGAACAAGAGAAT +
Preference number: 2 (lower is better)
Translates to: CPLLIGTWICQAPKS*RHIVKARSSSEQEN
Trigger: ATTCTCTTGTTCAGAGGAAGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR GCA 90 bp ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTCACCAACAACAACACTaGTTTTCCAAACTGCTGCTT +
Preference number: 2 (lower is better)
Translates to: TWICQAPKSLRHIVKARSHQQQH*FSKLLL
Trigger: AAGCAGCAGTTTGGAAAAGCAGTGTTGTTGTTGGTG...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR GCA 90 bp ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTAATGGATGTTCCATCTaGAAAAAGTGTCAAGCATTC +
Preference number: 2 (lower is better)
Translates to: TWICQAPKSLRHIVKARSNGCSI*KKCQAF
Trigger: GAATGCTTGACACTTTTTGCAGATGGAACATCCATT...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR GCA 72 bp AGAAATTGTAGCCTTCCCAGACCTTGGAATCTGCCTTaGCCAGAAATTCTACCACTAGGTTGGATTAGTGTA +
Preference number: 3 (lower is better)
Translates to: RNCSLPRPWNLP*PEILPLGWISV
Trigger: TACACTAATCCAACCTAGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGGTCTGGGAAGGCTACAATTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR CCA 72 bp TGGAATCTGCCTTGCCCAGAAATTCTACCACTAGGTTaGATTAGTGTAGACAAAAGAGACCAACATCAAAGG +
Preference number: 3 (lower is better)
Translates to: WNLPCPEILPLG*ISVDKRDQHQR
Trigger: CCTTTGATGTTGGTCTCTTTTGTCTACACTAATCCAACCTAGTGGTAGAATTTCTGGGCAAGGCAGATTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR-3UTR CAA 90 bp GCAATTTTAAATACAACTTGCTTTAATCAGACACTCCCAGTGAAACAGCCTAATACCTTGGAATCTGCCTaGCCCAGAAATTCTACCACT +
Preference number: 3 (lower is better)
Translates to: AILNTTCFNQTLPVKQPNTLESA*PRNSTT
Trigger: AGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGGT...ATTAGGCTGTTTCACTGGGAGTGTCTGATTAAAGCAAGTTGTATTTAAAATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR GCA 72 bp TTGCCAGAATCTTATACCAGCAAGAGTGTAATCTTATaGCTTACAATGCTAGAGATTGCCAATATGGTCCAC +
Preference number: 3 (lower is better)
Translates to: LPESYTSKSVIL*LTMLEIANMVH
Trigger: GTGGACCATATTGGCAATCTCTAGCATTGTAAGGCATAAGATTACACTCTTGCTGGTATAAGATTCTGGCAA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR TCA 72 bp ATTAAAATGTTTAAAGTGTTGTGGGTCCTAAGTTTATaGTCTGGAGACCCAGCATTGCCTATACCAGAGAGA +
Preference number: 3 (lower is better)
Translates to: IKMFKVLWVLSL*SGDPALPIPER
Trigger: TCTCTCTGGTATAGGCAATGCTGGGTCTCCAGATCATAAACTTAGGACCCACAACACTTTAAACATTTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS-3UTR TCA 90 bp TGTCCCCCACCCACCCACCCACCACCACCACCAACAACAACACTGCTTTTCCAAGGAAACCTCGAGAAGTaGGGAACTTCCACAAAAGTC +
Preference number: 4 (lower is better)
Translates to: CPPPTHPPPPPTTTLLFQGNLEK*GTSTKV
Trigger: GACTTTTGTGGAAGTTCCTCACTTCTCGAGGTTTCC...TTGGAAAAGCAGTGTTGTTGTTGGTGGTGGTGGTGGGTGGGTGGGTGGGGGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
3UTR CAA 72 bp GACCAACATCAAAGGCATTGCTGTCACAGATCACCTTaGCCAGAATCTTATACCAGCAAGAGTGTAATCTTA +
Preference number: 4 (lower is better)
Translates to: DQHQRHCCHRSP*PESYTSKSVIL
Trigger: TAAGATTACACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS CCA 90 bp ACCCACAGCCTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTTaGCCTGTGGGTGTGAACCATCTTTCCAGCTGGATGAGGGTGTTG +
Preference number: 5 (lower is better)
Translates to: THSLALSGPTTVTRV*PVGVNHLSSWMRVL
Trigger: CAACACCCTCATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAGGCTGTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS-3UTR CAA 90 bp TTGGGAGAAATTGTAGCCTTCCCAGACCTTGGAATCTGCCTTGCCCAGAAATTCAGCTGGATGAGGGTGTaGCTGTGGACCTCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: LGEIVAFPDLGICLAQKFSWMRV*LWTSRV
Trigger: CACCCTGGAGGTCCACAGCAACACCCTCATCCAGCT...GAATTTCTGGGCAAGGCAGATTCCAAGGTCTGGGAAGGCTACAATTTCTCCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS TCA 90 bp AAACCACAAAACAACCAAGCAACTGTCAAAGGAAACCTCGAGAAGTaGGGAACTTCCACAAAAGTCGTATCATTCATTGTGGTAATCCAA +
Preference number: 5 (lower is better)
Translates to: KPQNNQATVKGNLEK*GTSTKVVSFIVVIQ
Trigger: TTGGATTACCACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTCGAGGTTTCCTTTGACAGTTGCTTGGTTGTTTTGTGGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS CCA 72 bp CTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTTaGCCTGTGGGTGTGAACCATCTTTCCAGCTGGATG +
Preference number: 6 (lower is better)
Translates to: LALSGPTTVTRV*PVGVNHLSSWM
Trigger: CATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS CAA 72 bp CCTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTaGGCCTGTGGGTGTGAACCATCTTTCCAGCTGGAT +
Preference number: 6 (lower is better)
Translates to: PCLKWPHHSDSG*ACGCEPSFQLD
Trigger: ATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6
CDS TCA 72 bp AACAACCAAGCAACTGTCAAAGGAAACCTCGAGAAGTaGGGAACTTCCACAAAAGTCGTATCATTCATTGTG +
Preference number: 6 (lower is better)
Translates to: NNQATVKGNLEK*GTSTKVVSFIV
Trigger: CACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTCGAGGTTTCCTTTGACAGTTGCTTGGTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070223.6