Pregenerated sensors for KHDC1C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041722Ensembl transcript IDs: ENSMUST00000070223.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CTAGGTTGGATTAGTGTAGACAAAAGAGACCAACATCAAAGGCATTaGTGTCACAGATCACCTTTGCCAGAATCTTATACCAGCAAGAGT | + |
Preference number: 1 (lower is better) Translates to: LGWISVDKRDQHQRH*CHRSPLPESYTSKS Trigger: ACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTGGTCTCTTTTGTCTACACTAATCCAACCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR TCA 90 bp | ATTTGCTACATTAAAATGTTTAAAGTGTTGTGGGTCCTAAGTTTATaGTCTGGAGACCCAGCATTGCCTATACCAGAGAGAACTACTGGA | + |
Preference number: 1 (lower is better) Translates to: ICYIKMFKVLWVLSL*SGDPALPIPERTTG Trigger: TCCAGTAGTTCTCTCTGGTATAGGCAATGCTGGGTCTCCAGATCATAAACTTAGGACCCACAACACTTTAAACATTTTAATGTAGCAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR GCA 90 bp | AGATCACCTTTGCCAGAATCTTATACCAGCAAGAGTGTAATCTTATaGCTTACAATGCTAGAGATTGCCAATATGGTCCACAATTCAAAG | + |
Preference number: 1 (lower is better) Translates to: RSPLPESYTSKSVIL*LTMLEIANMVHNSK Trigger: CTTTGAATTGTGGACCATATTGGCAATCTCTAGCATTGTAAGGCATAAGATTACACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR CCA 90 bp | CAGATGGACAAAATCGAAAGTCAATGTCCATTGCTGATAGGAACATaGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCA | + |
Preference number: 1 (lower is better) Translates to: QMDKIESQCPLLIGT*ICQAPKSLRHIVKA Trigger: TGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACATTGACTTTCGATTTTGTCCATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR GCA 90 bp | ATCGAAAGTCAATGTCCATTGCTGATAGGAACATGGATATGTCAAGCACCTAAACCAGACCTTGGAATCTaGCTTGCCCAGAAATTCTAC | + |
Preference number: 2 (lower is better) Translates to: IESQCPLLIGTWICQAPKPDLGI*LAQKFY Trigger: GTAGAATTTCTGGGCAAGGCAGATTCCAAGGTCTGG...TTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACATTGACTTTCGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR CAA 90 bp | GACAAAAGAGACCAACATCAAAGGCATTGCTGTCACAGATCACCTTaGCCAGAATCTTATACCAGCAAGAGTGTAATCTTATGCCTTACA | + |
Preference number: 2 (lower is better) Translates to: DKRDQHQRHCCHRSP*PESYTSKSVILCLT Trigger: TGTAAGGCATAAGATTACACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTGGTCTCTTTTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR TCA 90 bp | ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTATCAGACACTCCCAGTaGAACAGCCTAATGTGCTTC | + |
Preference number: 2 (lower is better) Translates to: TWICQAPKSLRHIVKARSIRHSQ*NSLMCF Trigger: GAAGCACATTAGGCTGTTTCACTGGGAGTGTCTGAT...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR GCA 90 bp | AATACAACTTGCTTTAATCAGACACTCCCAGTGAAACAGCCTAATGTGCTTCTACAACATCAAAGGCATTaGTGTCACAGATCACCTTTG | + |
Preference number: 2 (lower is better) Translates to: NTTCFNQTLPVKQPNVLLQHQRH*CHRSPL Trigger: CAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTG...TAGAAGCACATTAGGCTGTTTCACTGGGAGTGTCTGATTAAAGCAAGTTGTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR GCA 90 bp | ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTCCTTGGAATCTGCCTTaGCCAGAAATTCTACCACTA | + |
Preference number: 2 (lower is better) Translates to: TWICQAPKSLRHIVKARSPWNLP*PEILPL Trigger: TAGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGG...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR CAA 90 bp | TGTCCATTGCTGATAGGAACATGGATATGTCAAGCACCTAAAAGTTaGAGACACATTGTAAAGGCAAGATCTTCCTCTGAACAAGAGAAT | + |
Preference number: 2 (lower is better) Translates to: CPLLIGTWICQAPKS*RHIVKARSSSEQEN Trigger: ATTCTCTTGTTCAGAGGAAGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR GCA 90 bp | ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTCACCAACAACAACACTaGTTTTCCAAACTGCTGCTT | + |
Preference number: 2 (lower is better) Translates to: TWICQAPKSLRHIVKARSHQQQH*FSKLLL Trigger: AAGCAGCAGTTTGGAAAAGCAGTGTTGTTGTTGGTG...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR GCA 90 bp | ACATGGATATGTCAAGCACCTAAAAGTTTGAGACACATTGTAAAGGCAAGATCTAATGGATGTTCCATCTaGAAAAAGTGTCAAGCATTC | + |
Preference number: 2 (lower is better) Translates to: TWICQAPKSLRHIVKARSNGCSI*KKCQAF Trigger: GAATGCTTGACACTTTTTGCAGATGGAACATCCATT...AGATCTTGCCTTTACAATGTGTCTCAAACTTTTAGGTGCTTGACATATCCATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR GCA 72 bp | AGAAATTGTAGCCTTCCCAGACCTTGGAATCTGCCTTaGCCAGAAATTCTACCACTAGGTTGGATTAGTGTA | + |
Preference number: 3 (lower is better) Translates to: RNCSLPRPWNLP*PEILPLGWISV Trigger: TACACTAATCCAACCTAGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGGTCTGGGAAGGCTACAATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR CCA 72 bp | TGGAATCTGCCTTGCCCAGAAATTCTACCACTAGGTTaGATTAGTGTAGACAAAAGAGACCAACATCAAAGG | + |
Preference number: 3 (lower is better) Translates to: WNLPCPEILPLG*ISVDKRDQHQR Trigger: CCTTTGATGTTGGTCTCTTTTGTCTACACTAATCCAACCTAGTGGTAGAATTTCTGGGCAAGGCAGATTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR-3UTR CAA 90 bp | GCAATTTTAAATACAACTTGCTTTAATCAGACACTCCCAGTGAAACAGCCTAATACCTTGGAATCTGCCTaGCCCAGAAATTCTACCACT | + |
Preference number: 3 (lower is better) Translates to: AILNTTCFNQTLPVKQPNTLESA*PRNSTT Trigger: AGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGGT...ATTAGGCTGTTTCACTGGGAGTGTCTGATTAAAGCAAGTTGTATTTAAAATTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR GCA 72 bp | TTGCCAGAATCTTATACCAGCAAGAGTGTAATCTTATaGCTTACAATGCTAGAGATTGCCAATATGGTCCAC | + |
Preference number: 3 (lower is better) Translates to: LPESYTSKSVIL*LTMLEIANMVH Trigger: GTGGACCATATTGGCAATCTCTAGCATTGTAAGGCATAAGATTACACTCTTGCTGGTATAAGATTCTGGCAA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR TCA 72 bp | ATTAAAATGTTTAAAGTGTTGTGGGTCCTAAGTTTATaGTCTGGAGACCCAGCATTGCCTATACCAGAGAGA | + |
Preference number: 3 (lower is better) Translates to: IKMFKVLWVLSL*SGDPALPIPER Trigger: TCTCTCTGGTATAGGCAATGCTGGGTCTCCAGATCATAAACTTAGGACCCACAACACTTTAAACATTTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS-3UTR TCA 90 bp | TGTCCCCCACCCACCCACCCACCACCACCACCAACAACAACACTGCTTTTCCAAGGAAACCTCGAGAAGTaGGGAACTTCCACAAAAGTC | + |
Preference number: 4 (lower is better) Translates to: CPPPTHPPPPPTTTLLFQGNLEK*GTSTKV Trigger: GACTTTTGTGGAAGTTCCTCACTTCTCGAGGTTTCC...TTGGAAAAGCAGTGTTGTTGTTGGTGGTGGTGGTGGGTGGGTGGGTGGGGGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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3UTR CAA 72 bp | GACCAACATCAAAGGCATTGCTGTCACAGATCACCTTaGCCAGAATCTTATACCAGCAAGAGTGTAATCTTA | + |
Preference number: 4 (lower is better) Translates to: DQHQRHCCHRSP*PESYTSKSVIL Trigger: TAAGATTACACTCTTGCTGGTATAAGATTCTGGCAAAGGTGATCTGTGACAGCAATGCCTTTGATGTTGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS CCA 90 bp | ACCCACAGCCTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTTaGCCTGTGGGTGTGAACCATCTTTCCAGCTGGATGAGGGTGTTG | + |
Preference number: 5 (lower is better) Translates to: THSLALSGPTTVTRV*PVGVNHLSSWMRVL Trigger: CAACACCCTCATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAGGCTGTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS-3UTR CAA 90 bp | TTGGGAGAAATTGTAGCCTTCCCAGACCTTGGAATCTGCCTTGCCCAGAAATTCAGCTGGATGAGGGTGTaGCTGTGGACCTCCAGGGTG | + |
Preference number: 5 (lower is better) Translates to: LGEIVAFPDLGICLAQKFSWMRV*LWTSRV Trigger: CACCCTGGAGGTCCACAGCAACACCCTCATCCAGCT...GAATTTCTGGGCAAGGCAGATTCCAAGGTCTGGGAAGGCTACAATTTCTCCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS TCA 90 bp | AAACCACAAAACAACCAAGCAACTGTCAAAGGAAACCTCGAGAAGTaGGGAACTTCCACAAAAGTCGTATCATTCATTGTGGTAATCCAA | + |
Preference number: 5 (lower is better) Translates to: KPQNNQATVKGNLEK*GTSTKVVSFIVVIQ Trigger: TTGGATTACCACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTCGAGGTTTCCTTTGACAGTTGCTTGGTTGTTTTGTGGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS CCA 72 bp | CTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTTaGCCTGTGGGTGTGAACCATCTTTCCAGCTGGATG | + |
Preference number: 6 (lower is better) Translates to: LALSGPTTVTRV*PVGVNHLSSWM Trigger: CATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS CAA 72 bp | CCTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTaGGCCTGTGGGTGTGAACCATCTTTCCAGCTGGAT | + |
Preference number: 6 (lower is better) Translates to: PCLKWPHHSDSG*ACGCEPSFQLD Trigger: ATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |
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CDS TCA 72 bp | AACAACCAAGCAACTGTCAAAGGAAACCTCGAGAAGTaGGGAACTTCCACAAAAGTCGTATCATTCATTGTG | + |
Preference number: 6 (lower is better) Translates to: NNQATVKGNLEK*GTSTKVVSFIV Trigger: CACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTCGAGGTTTCCTTTGACAGTTGCTTGGTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070223.6 |