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Pregenerated sensors for KHDC1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000085079

Ensembl transcript IDs: ENSMUST00000147615.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCCCAACTTCAGGCTTCAGGGACAGTGCTGAAGGCTCATGGTCATaGTCACCAGGTGACCTTCCTGTCCACTTAAAACTTGTCTCCATC +
Preference number: 1 (lower is better)
Translates to: PPTSGFRDSAEGSWS*SPGDLPVHLKLVSI
Trigger: GATGGAGACAAGTTTTAAGTGGACAGGAAGGTCACCTGGTGAGCATGACCATGAGCCTTCAGCACTGTCCCTGAAGCCTGAAGTTGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR CCA 90 bp AACCCTCCCCCAACTTCAGGCTTCAGGGACAGTGCTGAAGGCTCATaGTCATGCTCACCAGGTGACCTTCCTGTCCACTTAAAACTTGTC +
Preference number: 1 (lower is better)
Translates to: NPPPTSGFRDSAEGS*SCSPGDLPVHLKLV
Trigger: GACAAGTTTTAAGTGGACAGGAAGGTCACCTGGTGAGCATGACCATGAGCCTTCAGCACTGTCCCTGAAGCCTGAAGTTGGGGGAGGGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR CCA 90 bp CCCAGCCCTTGGAGACTGCCTTGCCCAGAGATTCCACAGCTCCTTTaGATTAGTGTAGACAAAGAAAAGAGACCAACATCAAAGGCATTA +
Preference number: 1 (lower is better)
Translates to: PSPWRLPCPEIPQLL*ISVDKEKRPTSKAL
Trigger: TAATGCCTTTGATGTTGGTCTCTTTTCTTTGTCTACACTAATCCAAAGGAGCTGTGGAATCTCTGGGCAAGGCAGTCTCCAAGGGCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR TCA 90 bp GAAGAGCCCTGTGAAGAGAACATGTTTAAGGAATTCCAATACCCTTaGTTGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCC +
Preference number: 1 (lower is better)
Translates to: EEPCEENMFKEFQYP*LSIYRSQKACFNPP
Trigger: GGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACAATCAAGGGTATTGGAATTCCTTAAACATGTTCTCTTCACAGGGCTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR GCA 90 bp TCAGTGTTTAAGACTAGGATAATCTTAAGTCTACTGAAAGTTCTCTaGAGAACCAATGTTTTCCACTCAAATCAGTTGAGAGCCCAAATC +
Preference number: 1 (lower is better)
Translates to: SVFKTRIILSLLKVL*RTNVFHSNQLRAQI
Trigger: GATTTGGGCTCTCAACTGATTTGAGTGGAAAACATTGGTTCTGCAGAGAACTTTCAGTAGACTTAAGATTATCCTAGTCTTAAACACTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR TCA 90 bp TCAGGTTCAGTTACTATTCTGAAACCAATCAAATTATTTAATTACTaGTCAAGGAAAGTAGGGAACTATGTTGGTAGCTTCAGACCAGTG +
Preference number: 1 (lower is better)
Translates to: SGSVTILKPIKLFNY*SRKVGNYVGSFRPV
Trigger: CACTGGTCTGAAGCTACCAACATAGTTCCCTACTTTCCTTGATCAGTAATTAAATAATTTGATTGGTTTCAGAATAGTAACTGAACCTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR TCA 90 bp GTACACTTCCCAGCCCTTGGAGACTGCCTTGCCCAGAGATTCCACAGCTCCTTTCCTACCCCCACTGGCTaGTTTCCCAAAGAAATTACC +
Preference number: 2 (lower is better)
Translates to: VHFPALGDCLAQRFHSSFPTPTG*FPKEIT
Trigger: GGTAATTTCTTTGGGAAATCAGCCAGTGGGGGTAGG...AAAGGAGCTGTGGAATCTCTGGGCAAGGCAGTCTCCAAGGGCTGGGAAGTGTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR TCA 90 bp TGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCCCCAACTTCAGGCTTCTCCATCAGGACCCTaGATCTTCTCACCTCTCACT +
Preference number: 2 (lower is better)
Translates to: CQFIDLRKHVLTLPQLQASPSGP*IFSPLT
Trigger: AGTGAGAGGTGAGAAGATTCAGGGTCCTGATGGAGA...AGCCTGAAGTTGGGGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR GCA 90 bp TGGTGTCCTGGTAAGACACAAGTGGCTGAAGAGCCCTGTGAAGAGAACATGTTTACAGTTTCCAGAATATaGAAAACTTGTAGCCCACTG +
Preference number: 2 (lower is better)
Translates to: WCPGKTQVAEEPCEENMFTVSRI*KTCSPL
Trigger: CAGTGGGCTACAAGTTTTGCATATTCTGGAAACTGT...AAACATGTTCTCTTCACAGGGCTCTTCAGCCACTTGTGTCTTACCAGGACACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR TCA 90 bp TGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCCCCAACTTCAGGCTAAACTTGTAGCCCACTaGTGTACACCTACCTCTTTG +
Preference number: 2 (lower is better)
Translates to: CQFIDLRKHVLTLPQLQAKLVAH*CTPTSL
Trigger: CAAAGAGGTAGGTGTACATCAGTGGGCTACAAGTTT...AGCCTGAAGTTGGGGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR GCA 90 bp TGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCCCCAACTTCAGGCTGTACACCTACCTCTTTaGCTTGCTAAACTCCAAGAC +
Preference number: 2 (lower is better)
Translates to: CQFIDLRKHVLTLPQLQAVHLPL*LAKLQD
Trigger: GTCTTGGAGTTTAGCAAGGCAAAGAGGTAGGTGTAC...AGCCTGAAGTTGGGGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR CCA 90 bp TGTGTAATCTTACACTGCCTGAAATTGCCAGTAAGGTCCTCCAAATCAAACTTATTCCCCTACCCCCACTaGCTGATTTCCCAAAGAAAT +
Preference number: 2 (lower is better)
Translates to: CVILHCLKLPVRSSKSNLFPYPH*LISQRN
Trigger: ATTTCTTTGGGAAATCAGCCAGTGGGGGTAGGGGAA...TAAGTTTGATTTGGAGGACCTTACTGGCAATTTCAGGCAGTGTAAGATTACACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR TCA 90 bp TGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCCCCAACTTCAGGCTAAGGTGCTGTTGATGTaGGAGAAGCAATTTATATCT +
Preference number: 2 (lower is better)
Translates to: CQFIDLRKHVLTLPQLQAKVLLM*EKQFIS
Trigger: AGATATAAATTGCTTCTCTCACATCAACAGCACCTT...AGCCTGAAGTTGGGGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR CCA 72 bp CCAACTTCAGGCTTCAGGGACAGTGCTGAAGGCTCATaGTCATGCTCACCAGGTGACCTTCCTGTCCACTTA +
Preference number: 3 (lower is better)
Translates to: PTSGFRDSAEGS*SCSPGDLPVHL
Trigger: TAAGTGGACAGGAAGGTCACCTGGTGAGCATGACCATGAGCCTTCAGCACTGTCCCTGAAGCCTGAAGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR CCA 72 bp GCTCAGGACACTGCTCCCTCTCCTAGAATAGGGAAATaGTGTCCTGGTAAGACACAAGTGGCTGAAGAGCCC +
Preference number: 3 (lower is better)
Translates to: AQDTAPSPRIGK*CPGKTQVAEEP
Trigger: GGGCTCTTCAGCCACTTGTGTCTTACCAGGACACCATTTCCCTATTCTAGGAGAGGGAGCAGTGTCCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR GCA 72 bp TCAGGCTTCAGGGACAGTGCTGAAGGCTCATGGTCATaGTCACCAGGTGACCTTCCTGTCCACTTAAAACTT +
Preference number: 3 (lower is better)
Translates to: SGFRDSAEGSWS*SPGDLPVHLKL
Trigger: AAGTTTTAAGTGGACAGGAAGGTCACCTGGTGAGCATGACCATGAGCCTTCAGCACTGTCCCTGAAGCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR CAA 90 bp ATAAGAAACCTCAAAACCAGTGAGAGGCTGTTCTCTGAAACCCTAAAGTGGCTGTACACTTCCCAGCCCTaGGAGACTGCCTTGCCCAGA +
Preference number: 3 (lower is better)
Translates to: IRNLKTSERLFSETLKWLYTSQP*ETALPR
Trigger: TCTGGGCAAGGCAGTCTCCAAGGGCTGGGAAGTGTA...CAGCCACTTTAGGGTTTCAGAGAACAGCCTCTCACTGGTTTTGAGGTTTCTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR GCA 72 bp AGACAATGTACACTTCCCAGCCCTTGGAGACTGCCTTaGCCAGAGATTCCACAGCTCCTTTGGATTAGTGTA +
Preference number: 3 (lower is better)
Translates to: RQCTLPSPWRLP*PEIPQLLWISV
Trigger: TACACTAATCCAAAGGAGCTGTGGAATCTCTGGGCAAGGCAGTCTCCAAGGGCTGGGAAGTGTACATTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR CCA 72 bp TGGAGACTGCCTTGCCCAGAGATTCCACAGCTCCTTTaGATTAGTGTAGACAAAGAAAAGAGACCAACATCA +
Preference number: 3 (lower is better)
Translates to: WRLPCPEIPQLL*ISVDKEKRPTS
Trigger: TGATGTTGGTCTCTTTTCTTTGTCTACACTAATCCAAAGGAGCTGTGGAATCTCTGGGCAAGGCAGTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR-3UTR CAA 90 bp TGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCCCCAACTTCAGGCTTTCCACTCAAATCAGTaGAGAGCCCAAATCAGGATC +
Preference number: 3 (lower is better)
Translates to: CQFIDLRKHVLTLPQLQAFHSNQ*RAQIRI
Trigger: GATCCTGATTTGGGCTCTCAACTGATTTGAGTGGAA...AGCCTGAAGTTGGGGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR TCA 72 bp TTCTCTGCAGAACCAATGTTTTCCACTCAAATCAGTTaGGAGCCCAAATCAGGATCCACATATCATTCATTG +
Preference number: 3 (lower is better)
Translates to: FSAEPMFSTQIS*EPKSGSTYHSL
Trigger: CAATGAATGATATGTGGATCCTGATTTGGGCTCTCAACTGATTTGAGTGGAAAACATTGGTTCTGCAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR GCA 72 bp AAGACTAGGATAATCTTAAGTCTACTGAAAGTTCTCTaGAGAACCAATGTTTTCCACTCAAATCAGTTGAGA +
Preference number: 3 (lower is better)
Translates to: KTRIILSLLKVL*RTNVFHSNQLR
Trigger: TCTCAACTGATTTGAGTGGAAAACATTGGTTCTGCAGAGAACTTTCAGTAGACTTAAGATTATCCTAGTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
CDS-3UTR TCA 90 bp TGTCAATTTATAGATCTCAGAAAGCATGTTTTAACCCTCCCCCAACTTCAGGCTTGGACCTCCAGGGTGTaGAGGTATTCATCATCAGGG +
Preference number: 4 (lower is better)
Translates to: CQFIDLRKHVLTLPQLQAWTSRV*RYSSSG
Trigger: CCCTGATGATGAATACCTTCACACCCTGGAGGTCCA...AGCCTGAAGTTGGGGGAGGGTTAAAACATGCTTTCTGAGATCTATAAATTGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
3UTR CAA 72 bp ACTTGTAGCCCACTGATGTACACCTACCTCTTTGCCTaGCTAAACTCCAAGACACAGGTGATAACTCTTTTT +
Preference number: 4 (lower is better)
Translates to: TCSPLMYTYLFA*LNSKTQVITLF
Trigger: AAAAAGAGTTATCACCTGTGTCTTGGAGTTTAGCAAGGCAAAGAGGTAGGTGTACATCAGTGGGCTACAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
CDS-3UTR TCA 90 bp AGCAATTTATATCTTGTTTCCACTCCAACCTCCCTAATAATAACTCTCGGGAGACCAACAACTGCTCCCTaGTATCAGATGAATCTGCAG +
Preference number: 4 (lower is better)
Translates to: SNLYLVSTPTSLIITLGRPTTAP*YQMNLQ
Trigger: CTGCAGATTCATCTGATATCAGGGAGCAGTTGTTGG...TCTCCCGAGAGTTATTATTAGGGAGGTTGGAGTGGAAACAAGATATAAATTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2
CDS-3UTR CAA 90 bp TGGTGTCCTGGTAAGACACAAGTGGCTGAAGAGCCCTGTGAAGAGAACATGTTTTGGAGTAGCATCAACTaGCCTTTAATTTTATCGAGA +
Preference number: 5 (lower is better)
Translates to: WCPGKTQVAEEPCEENMFWSSIN*PLILSR
Trigger: TCTCGATAAAATTAAAGGCAAGTTGATGCTACTCCA...AAACATGTTCTCTTCACAGGGCTCTTCAGCCACTTGTGTCTTACCAGGACACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147615.2