Pregenerated sensors for KHDC1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067750

Ensembl transcript IDs: ENSMUST00000088407.4

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	CAGATACCTTTGCCAGAATCTTACACCAGCAAGAGTGTAATCTTATaGCTTACAATTCTAGAGATTGCCAATATGGTCCACAATTCAAAG	+
Preference number: 1 (lower is better) Translates to: QIPLPESYTSKSVIL*LTILEIANMVHNSK Trigger: CTTTGAATTGTGGACCATATTGGCAATCTCTAGAATTGTAAGGCATAAGATTACACTCTTGCTGGTGTAAGATTCTGGCAAAGGTATCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR-3UTR GCA 90 bp	CAACAGAGTCACATTTGCTACATCCAAATGTTTAAACTGTTGTGGGTCCTAAGTCACCACCACCAACACTaGTTTTCCAAACTGCTGCTT	+
Preference number: 2 (lower is better) Translates to: QQSHICYIQMFKLLWVLSHHHQH*FSKLLL Trigger: AAGCAGCAGTTTGGAAAAGCAGTGTTGGTGGTGGTG...ACTTAGGACCCACAACAGTTTAAACATTTGGATGTAGCAAATGTGACTCTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR-3UTR GCA 90 bp	AAGGAAAGATCTTCCTCTGAGCAAGAGAATGGATGTTCCATCTGCAAAAAGTGTTACAATTCTAGAGATTaGCAATATGGTCCACAATTC	+
Preference number: 2 (lower is better) Translates to: KERSSSEQENGCSICKKCYNSRD*QYGPQF Trigger: GAATTGTGGACCATATTGGCAATCTCTAGAATTGTA...ACACTTTTTGCAGATGGAACATCCATTCTCTTGCTCAGAGGAAGATCTTTCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR-3UTR GCA 90 bp	GTGTGCCAAGTAAATACTACCATGAACCAGTTTGATTTAAAAACTAACTATGGCTGTCACAGATACCTTTaGCAGAATCTTACACCAGCA	+
Preference number: 2 (lower is better) Translates to: VCQVNTTMNQFDLKTNYGCHRYL*QNLTPA Trigger: TGCTGGTGTAAGATTCTGGCAAAGGTATCTGTGACA...GCCATAGTTAGTTTTTAAATCAAACTGGTTCATGGTAGTATTTACTTGGCACAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR GCA 72 bp	AGAAATTGTAGCCTTCCCAGACCTTGGAATCTGCCTTaGCCAGAAATTCTACCACTAGGTCGGATTAGTGTA	+
Preference number: 3 (lower is better) Translates to: RNCSLPRPWNLP*PEILPLGRISV Trigger: TACACTAATCCGACCTAGTGGTAGAATTTCTGGGCAAGGCAGATTCCAAGGTCTGGGAAGGCTACAATTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR TCA 72 bp	AAGCCTGAGACACATTGTAAAGGAAAGATCTTCCTCTaGGCAAGAGAATGGATGTTCCATCTGCAAAAAGTG	+
Preference number: 3 (lower is better) Translates to: KPETHCKGKIFL*AREWMFHLQKV Trigger: CACTTTTTGCAGATGGAACATCCATTCTCTTGCTCAGAGGAAGATCTTTCCTTTACAATGTGTCTCAGGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR GCA 72 bp	TTGCCAGAATCTTACACCAGCAAGAGTGTAATCTTATaGCTTACAATTCTAGAGATTGCCAATATGGTCCAC	+
Preference number: 3 (lower is better) Translates to: LPESYTSKSVIL*LTILEIANMVH Trigger: GTGGACCATATTGGCAATCTCTAGAATTGTAAGGCATAAGATTACACTCTTGCTGGTGTAAGATTCTGGCAA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR CCA 90 bp	CCTGTCCCCCACCCACCCACCACCACCACCAACACTGCTTTTCCAAACTGCTGCCAGCCTTGCCTTAAGTaGCCCCACCACAGTGACTCG	+
Preference number: 4 (lower is better) Translates to: PVPHPPTTTTNTAFPNCCQPCLK*PHHSDS Trigger: CGAGTCACTGTGGTGGGGCCACTTAAGGCAAGGCTG...GCAGCAGTTTGGAAAAGCAGTGTTGGTGGTGGTGGTGGGTGGGTGGGGGACAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR TCA 90 bp	ATGAAACACCTGTCCCCCACCCACCCACCACCACCACCAACACTGCTTTTCCAAATCTTTCCAGCTGGATaGGGGTGTTGCTGTGGACCT	+
Preference number: 4 (lower is better) Translates to: MKHLSPTHPPPPPTLLFQIFPAG*GCCCGP Trigger: AGGTCCACAGCAACACCCTCATCCAGCTGGAAAGAT...TTGGAAAAGCAGTGTTGGTGGTGGTGGTGGGTGGGTGGGGGACAGGTGTTTCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR GCA 90 bp	AGGCATTGCCTGTCACAGATACCTTTGCCAGAATCTTACACCAGCAAGAGTGTACATCACCCACAGCCTTaGCTTAAGTGGCCCCACCAC	+
Preference number: 4 (lower is better) Translates to: RHCLSQIPLPESYTSKSVHHPQP*LKWPHH Trigger: GTGGTGGGGCCACTTAAGGCAAGGCTGTGGGTGATG...TACACTCTTGCTGGTGTAAGATTCTGGCAAAGGTATCTGTGACAGGCAATGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR TCA 90 bp	AGGCATTGCCTGTCACAGATACCTTTGCCAGAATCTTACACCAGCAAGAGTGTATACTCCCCACTTTTCTaGTCATGTCCATCACCCACA	+
Preference number: 4 (lower is better) Translates to: RHCLSQIPLPESYTSKSVYSPLF*SCPSPT Trigger: TGTGGGTGATGGACATGATCAGAAAAGTGGGGAGTA...TACACTCTTGCTGGTGTAAGATTCTGGCAAAGGTATCTGTGACAGGCAATGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR CCA 90 bp	ATCAAAGGCATTGCCTGTCACAGATACCTTTGCCAGAATCTTACACCAGCAAGAAACCATCTTTCCAGCTaGATGAGGGTGTTGCTGTGG	+
Preference number: 4 (lower is better) Translates to: IKGIACHRYLCQNLTPARNHLSS*MRVLLW Trigger: CCACAGCAACACCCTCATCCAGCTGGAAAGATGGTT...TCTTGCTGGTGTAAGATTCTGGCAAAGGTATCTGTGACAGGCAATGCCTTTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR CCA 90 bp	AAGGAAAGATCTTCCTCTGAGCAAGAGAATGGATGTTCCATCTGCAAAAAGTGTCATGTCAAACACCAGTaGGCTGTGGAAGTAGTCAGG	+
Preference number: 4 (lower is better) Translates to: KERSSSEQENGCSICKKCHVKHQ*AVEVVR Trigger: CCTGACTACTTCCACAGCCCACTGGTGTTTGACATG...ACACTTTTTGCAGATGGAACATCCATTCTCTTGCTCAGAGGAAGATCTTTCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS-3UTR TCA 90 bp	CTTACAATTCTAGAGATTGCCAATATGGTCCACAATTCAAAGTTCCTTGACTATGGAAACCTCAAGAAGTaGGGAACTTCCACAAAAGTC	+
Preference number: 4 (lower is better) Translates to: LTILEIANMVHNSKFLDYGNLKK*GTSTKV Trigger: GACTTTTGTGGAAGTTCCTCACTTCTTGAGGTTTCC...ATAGTCAAGGAACTTTGAATTGTGGACCATATTGGCAATCTCTAGAATTGTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
3UTR CAA 72 bp	GTATTAGAGATGGACAAAATCGAAAGTCAATGTCCATaGCTGATAGGAACATGGATATGTCAAGCACCTAAA	+
Preference number: 4 (lower is better) Translates to: VLEMDKIESQCP*LIGTWICQAPK Trigger: TTTAGGTGCTTGACATATCCATGTTCCTATCAGCAATGGACATTGACTTTCGATTTTGTCCATCTCTAATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS TCA 90 bp	AAACCACAAAACAACCAAGCAACTGTCAAAGGAAACCTCAAGAAGTaGGGAACTTCCACAAAAGTCGTATCATTCATTGTGGTAATCCAA	+
Preference number: 5 (lower is better) Translates to: KPQNNQATVKGNLKK*GTSTKVVSFIVVIQ Trigger: TTGGATTACCACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTTGAGGTTTCCTTTGACAGTTGCTTGGTTGTTTTGTGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS CAA 90 bp	CACCCACAGCCTTGCCTTAAGTGGCCCCACCACAGTGACTCGGGTTaGGCCTGTGGGTGTGAACCATCTTTCCAGCTGGATGAGGGTGTT	+
Preference number: 6 (lower is better) Translates to: HPQPCLKWPHHSDSG*ACGCEPSFQLDEGV Trigger: AACACCCTCATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCACTTAAGGCAAGGCTGTGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS TCA 72 bp	TCCCGGATCTGCAGTAGCATCATCTTGCCTTTAATTTaGTCCAAATTGTTCTTACTCCCCACTTTTCTGATC	+
Preference number: 6 (lower is better) Translates to: SRICSSIILPLI*SKLFLLPTFLI Trigger: GATCAGAAAAGTGGGGAGTAAGAACAATTTGGATCAAATTAAAGGCAAGATGATGCTACTGCAGATCCGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088407.4
CDS TCA 72 bp	AACAACCAAGCAACTGTCAAAGGAAACCTCAAGAAGTaGGGAACTTCCACAAAAGTCGTATCATTCATTGTG	+
Preference number: 6 (lower is better) Translates to: NNQATVKGNLKK*GTSTKVVSFIV Trigger: CACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTTGAGGTTTCCTTTGACAGTTGCTTGGTTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088407.4