Pregenerated sensors for KERA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019932Ensembl transcript IDs: ENSMUST00000105286.4
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCAGGTGTCTCTTCCTGCTAGCTCATTGTaGTGCTTATGGGGAGTCTGC | + |
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Preference number: 2 (lower is better) Translates to: PEPLSLALLFHSNNQVSLPASSL*CLWGVC Trigger: GCAGACTCCCCATAAGCACCACAATGAGCTAGCAGG...AAGAGACACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR-3UTR GCA 90 bp | TTCAACTCTGTGTCTGTTTTGTTAATCAGAAGAAAGCAAACTAATACACGTGGCGTGGGTAAGAACAATTaGAAGTGTGGTCTAGGACCT | + |
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Preference number: 2 (lower is better) Translates to: FNSVSVLLIRRKQTNTRGVGKNN*KCGLGP Trigger: AGGTCCTAGACCACACTTGCAATTGTTCTTACCCAC...GCCACGTGTATTAGTTTGCTTTCTTCTGATTAACAAAACAGACACAGAGTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CAA 90 bp | ATATTTCATTTATTCCTATTTTCAGAGCTTCCTCCTGCTAGCTCATaGTGGTGCTTATGGGGAGTCTGCACTACCAGTACTCATAAATTT | + |
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Preference number: 2 (lower is better) Translates to: IFHLFLFSELPPASS*WCLWGVCTTSTHKF Trigger: AAATTTATGAGTACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGAAAATAGGAATAAATGAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CAA 90 bp | TTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTaGCTTTATTGTTTCATTCTAATAACCAGGTGTCTCTTTTTAGAA | + |
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Preference number: 2 (lower is better) Translates to: LLLYCFAPRDLNLSL*LYCFILITRCLFLE Trigger: TTCTAAAAAGAGACACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATAAAGCAGTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CCA 72 bp | TCAGAGCTTCCTCCTGCTAGCTCATTGTGGTGCTTATaGGGAGTCTGCACTACCAGTACTCATAAATTTGGT | + |
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Preference number: 3 (lower is better) Translates to: SELPPASSLWCL*GVCTTSTHKFG Trigger: ACCAAATTTATGAGTACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CCA 72 bp | TTCCTATTTTCAGAGCTTCCTCCTGCTAGCTCATTGTaGTGCTTATGGGGAGTCTGCACTACCAGTACTCAT | + |
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Preference number: 3 (lower is better) Translates to: FLFSELPPASSL*CLWGVCTTSTH Trigger: ATGAGTACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGAAAATAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR GCA 72 bp | CCTCCTGCTAGCTCATTGTGGTGCTTATGGGGAGTCTaGACTACCAGTACTCATAAATTTGGTCATATGCAA | + |
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Preference number: 3 (lower is better) Translates to: PPASSLWCLWGV*TTSTHKFGHMQ Trigger: TTGCATATGACCAAATTTATGAGTACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR GCA 72 bp | CTATTTTCAGAGCTTCCTCCTGCTAGCTCATTGTGGTaGTTATGGGGAGTCTGCACTACCAGTACTCATAAA | + |
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Preference number: 3 (lower is better) Translates to: LFSELPPASSLW*LWGVCTTSTHK Trigger: TTTATGAGTACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGAAAATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR TCA 72 bp | AGAGCATCCTCAAACAGAAAGAACAAGCTGCACATATaGAAATGGTGGGTAAGAACAATTGCAAGTGTGGTC | + |
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Preference number: 3 (lower is better) Translates to: RASSNRKNKLHI*KWWVRTIASVV Trigger: GACCACACTTGCAATTGTTCTTACCCACCATTTTCATATGTGCAGCTTGTTCTTTCTGTTTGAGGATGCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR-3UTR CAA 90 bp | GAAATGATAGTGAACCACCACCTTTTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTaGCTTTATTGTTTCATTCTA | + |
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Preference number: 3 (lower is better) Translates to: EMIVNHHLLLLYCFAPRDLNLSL*LYCFIL Trigger: TAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAG...GTCCCTTGGAGCGAAACAATAAAGCAGTAAAAGGTGGTGGTTCACTATCATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GAGCTTCCTCCTGCTAGCTCATTGTGGTGCTTATGGGGAGTCTGCACTACCAGTTTGATCCATCTCAGCTaGGTGGCATTCTCAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: ELPPASSLWCLWGVCTTSLIHLS*VAFSKG Trigger: GCCCTTTGAGAATGCCACCCAGCTGAGATGGATCAA...ACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR TCA 90 bp | CCACCTTTTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTTTCGGGATCGGTGGCTTaGTTTCATTCCCATCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: PPFTALLFRSKGPEPLSLSGSVA*FHSHPD Trigger: GTCTGGATGGGAATGAAATCAAGCCACCGATCCCGA...AAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATAAAGCAGTAAAAGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GAGCTTCCTCCTGCTAGCTCATTGTGGTGCTTATGGGGAGTCTGCACTACCAGTCTAGAAAGAGTTGCATaGTGTTGGCTGGTAATCTTG | + |
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Preference number: 4 (lower is better) Translates to: ELPPASSLWCLWGVCTTSLERVA*CWLVIL Trigger: CAAGATTACCAGCCAACACCATGCAACTCTTTCTAG...ACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | CCACCTTTTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTTTCCATCTCAGCTGGGTaGCATTCTCAAAGGGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PPFTALLFRSKGPEPLSLSISAG*HSQRAS Trigger: AGAAGCCCTTTGAGAATGCCACCCAGCTGAGATGGA...AAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATAAAGCAGTAAAAGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR TCA 90 bp | CCACCTTTTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTTTTACTGAAGGTCCCCTaGGGGATTCTGGATACTTTG | + |
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Preference number: 4 (lower is better) Translates to: PPFTALLFRSKGPEPLSLLLKVP*GILDTL Trigger: CAAAGTATCCAGAATCCCTCAGGGGACCTTCAGTAA...AAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATAAAGCAGTAAAAGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR TCA 90 bp | TTATTCCTATTTTCAGAGCTTCCTCCTGCTAGCTCATTGTGGTGCTTATGGGGAGAGGTACCAGATCCTTaGAGGAATAGGAGGGATTTC | + |
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Preference number: 4 (lower is better) Translates to: LFLFSELPPASSLWCLWGEVPDP*RNRRDF Trigger: GAAATCCCTCCTATTCCTTCAAGGATCTGGTACCTC...TCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGAAAATAGGAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CAA 72 bp | TTATTCCTATTTTCAGAGCTTCCTCCTGCTAGCTCATaGTGGTGCTTATGGGGAGTCTGCACTACCAGTACT | + |
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Preference number: 4 (lower is better) Translates to: LFLFSELPPASS*WCLWGVCTTST Trigger: AGTACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGAAAATAGGAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR TCA 90 bp | GGTCTAGGACCTAGAAGTAACAATCAAAATCTCATACCACATACATCTACCCTTGTTGTGGTCCGTGAATaGAGGCATCCTGTTCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: GLGPRSNNQNLIPHTSTLVVVRE*RHPVLH Trigger: GTGCAGAACAGGATGCCTTCATTCACGGACCACAAC...AAGGGTAGATGTATGTGGTATGAGATTTTGATTGTTACTTCTAGGTCCTAGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCAGGTGTCTAGAGTTGCATGGTGTTaGCTGGTAATCTTGGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GPEPLSLALLFHSNNQVSRVAWC*LVILGA Trigger: TGCCCCCAAGATTACCAGCCAACACCATGCAACTCT...AGACACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | CCACCTTTTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTTGTTGAAGATCCAGAATaGATGACACATCAAAACCCC | + |
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Preference number: 4 (lower is better) Translates to: PPFTALLFRSKGPEPLSLVEDPE*MTHQNP Trigger: GGGGTTTTGATGTGTCATCCATTCTGGATCTTCAAC...AAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATAAAGCAGTAAAAGGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GCTCCAAGGGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCCTGCACGCAGTGTGGTaGGACATATTACAGACATGT | + |
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Preference number: 4 (lower is better) Translates to: APRDLNLSLLLYCFILITLHAVW*DILQTC Trigger: ACATGTCTGTAATATGTCCCACCACACTGCGTGCAG...GGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GCTCCAAGGGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCGTTCTGCACGCAGTGTaGTGGGACATATTACAGACA | + |
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Preference number: 4 (lower is better) Translates to: APRDLNLSLLLYCFILITVLHAV*WDILQT Trigger: TGTCTGTAATATGTCCCACCACACTGCGTGCAGAAC...GGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | TTATTCCTATTTTCAGAGCTTCCTCCTGCTAGCTCATTGTGGTGCTTATGGGGATTGTTCCAAACTTCTTaGCAATGGAGAAGGTACCTC | + |
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Preference number: 4 (lower is better) Translates to: LFLFSELPPASSLWCLWGLFQTS*QWRRYL Trigger: GAGGTACCTTCTCCATTGCCAAGAAGTTTGGAACAA...TCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTCTGAAAATAGGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GACCTAGAAGTAACAATCAAAATCTCATACCACATACATCTACCCTTAAACCAGGACATCCCAGTCCTCTaGGTCCTGTATTTCATAGGC | + |
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Preference number: 4 (lower is better) Translates to: DLEVTIKISYHIHLPLNQDIPVL*VLYFIG Trigger: GCCTATGAAATACAGGACCCAGAGGACTGGGATGTC...CTGGTTTAAGGGTAGATGTATGTGGTATGAGATTTTGATTGTTACTTCTAGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CAA 72 bp | TATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTaGCTTTATTGTTTCATTCTAATAACCAGGTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: YCFAPRDLNLSL*LYCFILITRCL Trigger: GAGACACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR TCA 90 bp | AAGGGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCAGGTGTATATTATGAAAGCCTaGAGAAGCTTGAAGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: KGPEPLSLALLFHSNNQVYIMKA*RSLKQA Trigger: GGCTTGCTTCAAGCTTCTTCAGGCTTTCATAATATA...CACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCAGGTGTCTAGGGCTTCTCTGGTATaGATTCAATCAGGTTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: GPEPLSLALLFHSNNQVSRASLV*IQSGCF Trigger: AAAACAACCTGATTGAATCCATACCAGAGAAGCCCT...AGACACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CCA 90 bp | GCTCCAAGGGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCCAGGTATTCCTTCAATaGAGTTGTTGTCTAGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: APRDLNLSLLLYCFILITQVFLQ*SCCLER Trigger: TCTTTCTAGACAACAACTCCATTGAAGGAATACCTG...GGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR GCA 90 bp | TTCAACTCTGTGTCTGTTTTGTTAATCAGAAGAAAGCAAACTAATACACGTGGCTTCGCCATATTTAACTaGATGAGGTTCTTAAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: FNSVSVLLIRRKQTNTRGFAIFN*MRFLRP Trigger: GGGCCTTAAGAACCTCATGCAGTTAAATATGGCGAA...GCCACGTGTATTAGTTTGCTTTCTTCTGATTAACAAAACAGACACAGAGTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR GCA 90 bp | CAGGTGTCTCTTTTTAGAAAGCTTTTGACTAGTGGGCTCATTATAATGATGACATTGTCTAGAAAGAGTTaGATGGTGTTGGCTGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: QVSLFRKLLTSGLIIMMTLSRKS*MVLAGN Trigger: ATTACCAGCCAACACCATGCAACTCTTTCTAGACAA...TGTCATCATTATAATGAGCCCACTAGTCAAAAGCTTTCTAAAAAGAGACACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CAA 72 bp | TTTGAGTTGAGGAGCTTTTTCAACTCTGTGTCTGTTTaGTTAATCAGAAGAAAGCAAACTAATACACGTGGC | + |
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Preference number: 4 (lower is better) Translates to: FELRSFFNSVSV*LIRRKQTNTRG Trigger: GCCACGTGTATTAGTTTGCTTTCTTCTGATTAACAAAACAGACACAGAGTTGAAAAAGCTCCTCAACTCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR GCA 90 bp | GGACCTAGAAGTAACAATCAAAATCTCATACCACATACATCTACCCTTAAACCATCTAATAGTTTGTTATaGTGCAGATCAAGAAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: GPRSNNQNLIPHTSTLKPSNSLL*CRSRRV Trigger: GACCCTTCTTGATCTGCAGCATAACAAACTATTAGA...TGGTTTAAGGGTAGATGTATGTGGTATGAGATTTTGATTGTTACTTCTAGGTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| 3UTR CAA 72 bp | CATTCTAATAACCAGGTGTCTCTTTTTAGAAAGCTTTaGACTAGTGGGCTCATTATAATGATGACAGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: HSNNQVSLFRKL*TSGLIIMMTEE Trigger: TTCCTCTGTCATCATTATAATGAGCCCACTAGTCAAAAGCTTTCTAAAAAGAGACACCTGGTTATTAGAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 90 bp | CGGTGGCTTGATTTCATTCCCATCCAGACGCAGGTAGCTCAGTTGTaGTCCGTGAATGAAGGCATCCTGTTCTGCACGCAGTGTGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: RWLDFIPIQTQVAQL*SVNEGILFCTQCGG Trigger: CCCACCACACTGCGTGCAGAACAGGATGCCTTCATTCACGGACCACAACTGAGCTACCTGCGTCTGGATGGGAATGAAATCAAGCCACCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | GAGCTTCCTCCTGCTAGCTCATTGTGGTGCTTATGGGGAGTCTGCACTACCAGTAAGAGTTGCATGGTGTaGGCTGGTAATCTTGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: ELPPASSLWCLWGVCTTSKSCMV*AGNLGG Trigger: GCCCCCAAGATTACCAGCCAACACCATGCAACTCTT...ACTGGTAGTGCAGACTCCCCATAAGCACCACAATGAGCTAGCAGGAGGAAGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 90 bp | TTTCATTCCCATCCAGACGCAGGTAGCTCAGTTGTGGTCCGTGAATaGAGGCATCCTGTTCTGCACGCAGTGTGGTGGGACATATTACAG | + |
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Preference number: 5 (lower is better) Translates to: FHSHPDAGSSVVVRE*RHPVLHAVWWDILQ Trigger: CTGTAATATGTCCCACCACACTGCGTGCAGAACAGGATGCCTTCATTCACGGACCACAACTGAGCTACCTGCGTCTGGATGGGAATGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 90 bp | AGCCTGAAGAAGCTTGAAGCAAGCCACCAAATCTATCGGGATCGGTaGCTTGATTTCATTCCCATCCAGACGCAGGTAGCTCAGTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: SLKKLEASHQIYRDR*LDFIPIQTQVAQLW Trigger: CCACAACTGAGCTACCTGCGTCTGGATGGGAATGAAATCAAGCCACCGATCCCGATAGATTTGGTGGCTTGCTTCAAGCTTCTTCAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 90 bp | GTATTCCTTCAATGGAGTTGTTGTCTAGAAAGAGTTGCATGGTGTTaGCTGGTAATCTTGGGGGCATGTTCCTCAGGGCATTCTTCGCCA | + |
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Preference number: 5 (lower is better) Translates to: VFLQWSCCLERVAWC*LVILGACSSGHSSP Trigger: TGGCGAAGAATGCCCTGAGGAACATGCCCCCAAGATTACCAGCCAACACCATGCAACTCTTTCTAGACAACAACTCCATTGAAGGAATAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | AAGGGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCAGGTGTGTTGGCTGGTAATCTaGGGGGCATGTTCCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: KGPEPLSLALLFHSNNQVCWLVI*GACSSG Trigger: CCCTGAGGAACATGCCCCCAAGATTACCAGCCAACA...CACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 90 bp | TTTCAGGTATTCCTTCAATGGAGTTGTTGTCTAGAAAGAGTTGCATaGTGTTGGCTGGTAATCTTGGGGGCATGTTCCTCAGGGCATTCT | + |
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Preference number: 5 (lower is better) Translates to: FQVFLQWSCCLERVA*CWLVILGACSSGHS Trigger: AGAATGCCCTGAGGAACATGCCCCCAAGATTACCAGCCAACACCATGCAACTCTTTCTAGACAACAACTCCATTGAAGGAATACCTGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 90 bp | TATGGATTCAATCAGGTTGTTTTCCAGGTAGAGGTACCAGATCCTTaGAGGAATAGGAGGGATTTCTGTGAGACCTCTGTTCTCACAGTA | + |
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Preference number: 5 (lower is better) Translates to: YGFNQVVFQVEVPDP*RNRRDFCETSVLTV Trigger: TACTGTGAGAACAGAGGTCTCACAGAAATCCCTCCTATTCCTTCAAGGATCTGGTACCTCTACCTGGAAAACAACCTGATTGAATCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | TTACTGCTTTATTGTTTCGCTCCAAGGGACCTGAACCTCTCTCTCTTGCTTTATATTGTTCCAAACTTCTaGGCAATGGAGAAGGTACCT | + |
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Preference number: 5 (lower is better) Translates to: LLLYCFAPRDLNLSLLLYIVPNF*AMEKVP Trigger: AGGTACCTTCTCCATTGCCAAGAAGTTTGGAACAAT...ATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGCGAAACAATAAAGCAGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | GGACCTAGAAGTAACAATCAAAATCTCATACCACATACATCTACCCTTAAACCACCTGCATCTGATAGTTaGTTGTGGTTGAGCCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: GPRSNNQNLIPHTSTLKPPASDS*LWLSLR Trigger: CCTGAGGCTCAACCACAACAAACTATCAGATGCAGG...TGGTTTAAGGGTAGATGTATGTGGTATGAGATTTTGATTGTTACTTCTAGGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | GCTCCAAGGGACCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCGCGTTGTCTAATAGTTaGTTATGCTGCAGATCAAGA | + |
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Preference number: 5 (lower is better) Translates to: APRDLNLSLLLYCFILITALSNS*LCCRSR Trigger: TCTTGATCTGCAGCATAACAAACTATTAGACAACGC...GGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGGTCCCTTGGAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | TTCAACTCTGTGTCTGTTTTGTTAATCAGAAGAAAGCAAACTAATACACGTGGCTGCTGCAGGTTAGCATaGATTCGGGGAAAGTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: FNSVSVLLIRRKQTNTRGCCRLA*IRGKFV Trigger: CACAAACTTTCCCCGAATCAATGCTAACCTGCAGCA...GCCACGTGTATTAGTTTGCTTTCTTCTGATTAACAAAACAGACACAGAGTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS-3UTR CAA 90 bp | CCTGAACCTCTCTCTCTTGCTTTATTGTTTCATTCTAATAACCAGGTGTCTCTTCCTTCAATGGAGTTGTaGTCTAGAAAGAGTTGCATG | + |
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Preference number: 5 (lower is better) Translates to: PEPLSLALLFHSNNQVSLPSMEL*SRKSCM Trigger: CATGCAACTCTTTCTAGACAACAACTCCATTGAAGG...AAGAGACACCTGGTTATTAGAATGAAACAATAAAGCAAGAGAGAGAGGTTCAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 90 bp | ATATTTAACTGCATGAGGTTCTTAAGGCCCTTGAAAGTATCTCTTTaGAAGGCGTTGTCTAATAGTTTGTTATGCTGCAGATCAAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: IFNCMRFLRPLKVSL*KALSNSLLCCRSRR Trigger: CCTTCTTGATCTGCAGCATAACAAACTATTAGACAACGCCTTTCAAAGAGATACTTTCAAGGGCCTTAAGAACCTCATGCAGTTAAATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 72 bp | CATCCAGACGCAGGTAGCTCAGTTGTGGTCCGTGAATaGAGGCATCCTGTTCTGCACGCAGTGTGGTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: HPDAGSSVVVRE*RHPVLHAVWWD Trigger: GTCCCACCACACTGCGTGCAGAACAGGATGCCTTCATTCACGGACCACAACTGAGCTACCTGCGTCTGGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CAA 90 bp | GATCGGTGGCTTGATTTCATTCCCATCCAGACGCAGGTAGCTCAGTaGTGGTCCGTGAATGAAGGCATCCTGTTCTGCACGCAGTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: DRWLDFIPIQTQVAQ*WSVNEGILFCTQCG Trigger: ACCACACTGCGTGCAGAACAGGATGCCTTCATTCACGGACCACAACTGAGCTACCTGCGTCTGGATGGGAATGAAATCAAGCCACCGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 72 bp | GGGACAATAGAAGTCGTCGTGGACATCCCAGTCCTCTaGGTCCTGTATTTCATAGGCCTGTCTCACACTCTG | + |
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Preference number: 6 (lower is better) Translates to: GTIEVVVDIPVL*VLYFIGLSHTL Trigger: CAGAGTGTGAGACAGGCCTATGAAATACAGGACCCAGAGGACTGGGATGTCCACGACGACTTCTATTGTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 72 bp | CCCCTCGACGGGAGACCTGCATCTGATAGTTTGTTGTaGTTGAGCCTCAGGAAAGCCACCTTAGGAATCACA | + |
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Preference number: 6 (lower is better) Translates to: PLDGRPASDSLL*LSLRKATLGIT Trigger: TGTGATTCCTAAGGTGGCTTTCCTGAGGCTCAACCACAACAAACTATCAGATGCAGGTCTCCCGTCGAGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 72 bp | GATTTCATTCCCATCCAGACGCAGGTAGCTCAGTTGTaGTCCGTGAATGAAGGCATCCTGTTCTGCACGCAG | + |
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Preference number: 6 (lower is better) Translates to: DFIPIQTQVAQL*SVNEGILFCTQ Trigger: CTGCGTGCAGAACAGGATGCCTTCATTCACGGACCACAACTGAGCTACCTGCGTCTGGATGGGAATGAAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CAA 72 bp | TCAAAACCCCTCGACGGGAGACCTGCATCTGATAGTTaGTTGTGGTTGAGCCTCAGGAAAGCCACCTTAGGA | + |
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Preference number: 6 (lower is better) Translates to: SKPLDGRPASDS*LWLSLRKATLG Trigger: TCCTAAGGTGGCTTTCCTGAGGCTCAACCACAACAAACTATCAGATGCAGGTCTCCCGTCGAGGGGTTTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 72 bp | GAGCTGGTTGTAAGACAGTTGAAGATCCAGAATGGATaGCACATCAAAACCCCTCGACGGGAGACCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: ELVVRQLKIQNG*HIKTPRRETCI Trigger: GATGCAGGTCTCCCGTCGAGGGGTTTTGATGTGTCATCCATTCTGGATCTTCAACTGTCTTACAACCAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS GCA 72 bp | GCTCAGTTGTGGTCCGTGAATGAAGGCATCCTGTTCTaGACGCAGTGTGGTGGGACATATTACAGACATGTT | + |
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Preference number: 6 (lower is better) Translates to: AQLWSVNEGILF*TQCGGTYYRHV Trigger: AACATGTCTGTAATATGTCCCACCACACTGCGTGCAGAACAGGATGCCTTCATTCACGGACCACAACTGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CCA 72 bp | AAGCTTGAAGCAAGCCACCAAATCTATCGGGATCGGTaGCTTGATTTCATTCCCATCCAGACGCAGGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: KLEASHQIYRDR*LDFIPIQTQVA Trigger: AGCTACCTGCGTCTGGATGGGAATGAAATCAAGCCACCGATCCCGATAGATTTGGTGGCTTGCTTCAAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CAA 72 bp | CTCGACGGGAGACCTGCATCTGATAGTTTGTTGTGGTaGAGCCTCAGGAAAGCCACCTTAGGAATCACATTG | + |
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Preference number: 6 (lower is better) Translates to: LDGRPASDSLLW*SLRKATLGITL Trigger: CAATGTGATTCCTAAGGTGGCTTTCCTGAGGCTCAACCACAACAAACTATCAGATGCAGGTCTCCCGTCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CAA 90 bp | GGTATTCCTTCAATGGAGTTGTTGTCTAGAAAGAGTTGCATGGTGTaGGCTGGTAATCTTGGGGGCATGTTCCTCAGGGCATTCTTCGCC | + |
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Preference number: 6 (lower is better) Translates to: GIPSMELLSRKSCMV*AGNLGGMFLRAFFA Trigger: GGCGAAGAATGCCCTGAGGAACATGCCCCCAAGATTACCAGCCAACACCATGCAACTCTTTCTAGACAACAACTCCATTGAAGGAATACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CAA 90 bp | GATGACACATCAAAACCCCTCGACGGGAGACCTGCATCTGATAGTTaGTTGTGGTTGAGCCTCAGGAAAGCCACCTTAGGAATCACATTG | + |
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Preference number: 6 (lower is better) Translates to: DDTSKPLDGRPASDS*LWLSLRKATLGITL Trigger: CAATGTGATTCCTAAGGTGGCTTTCCTGAGGCTCAACCACAACAAACTATCAGATGCAGGTCTCCCGTCGAGGGGTTTTGATGTGTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS CAA 90 bp | GACACATCAAAACCCCTCGACGGGAGACCTGCATCTGATAGTTTGTaGTGGTTGAGCCTCAGGAAAGCCACCTTAGGAATCACATTGAAA | + |
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Preference number: 6 (lower is better) Translates to: DTSKPLDGRPASDSL*WLSLRKATLGITLK Trigger: TTTCAATGTGATTCCTAAGGTGGCTTTCCTGAGGCTCAACCACAACAAACTATCAGATGCAGGTCTCCCGTCGAGGGGTTTTGATGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 72 bp | GCTGCAGATCAAGAAGGGTCAGGTTTTCCAGATTACTaGAGGTCCCCTGAGGGATTCTGGATACTTTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: AADQEGSGFPDY*RSPEGFWILCF Trigger: GAAACAAAGTATCCAGAATCCCTCAGGGGACCTTCAGTAATCTGGAAAACCTGACCCTTCTTGATCTGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 72 bp | CCTGTCTCACACTCTGTGTCCACACAGTATCTGCTATaGGTAACACCCAGAGTATTAAACAGTTTGGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: PVSHSVSTQYLL*VTPRVLNSLGL Trigger: CAACCCCAAACTGTTTAATACTCTGGGTGTTACTCATAGCAGATACTGTGTGGACACAGAGTGTGAGACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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| CDS TCA 72 bp | TGCATGAGGTTCTTAAGGCCCTTGAAAGTATCTCTTTaGAAGGCGTTGTCTAATAGTTTGTTATGCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: CMRFLRPLKVSL*KALSNSLLCCR Trigger: TCTGCAGCATAACAAACTATTAGACAACGCCTTTCAAAGAGATACTTTCAAGGGCCTTAAGAACCTCATGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105286.4 |
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