RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KDSR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000009905

Ensembl transcript IDs: ENSMUST00000010049.6

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCGCCCATGGAACCGCAGTCTTGCGCATGTGCACGCGCACAGGCTaGCATCAGAGGGCTCCTTACCATGCTGAAGATACTGCTGGGTGC +
Preference number: 1 (lower is better)
Translates to: LAHGTAVLRMCTRTG*HQRAPYHAEDTAGC
Trigger: GCACCCAGCAGTATCTTCAGCATGGTAAGGAGCCCTCTGATGGCAGCCTGTGCGCGTGCACATGCGCAAGACTGCGGTTCCATGGGCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 90 bp GGCTGCCATCAGAGGGCTCCTTACCATGCTGAAGATACTGCTGGGTaGCAGTGCGCGAGACAGAGCCGCTCAACACCCAACCTCCAAACC +
Preference number: 1 (lower is better)
Translates to: GCHQRAPYHAEDTAG*QCARQSRSTPNLQT
Trigger: GGTTTGGAGGTTGGGTGTTGAGCGGCTCTGTCTCGCGCACTGGCACCCAGCAGTATCTTCAGCATGGTAAGGAGCCCTCTGATGGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 90 bp TGGGGAACAATAAACAGGATGAGTGGGATACAGGCAGGACTCATCTaGGGCACTTGTTGCAGGCTCGCCCATGGAACCGCAGTCTTGCGC +
Preference number: 1 (lower is better)
Translates to: WGTINRMSGIQAGLI*GTCCRLAHGTAVLR
Trigger: GCGCAAGACTGCGGTTCCATGGGCGAGCCTGCAACAAGTGCCTCAGATGAGTCCTGCCTGTATCCCACTCATCCTGTTTATTGTTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 90 bp TGTCCCACCTCAGCAGCTGTCCAATATGCCACAAGTCGTAGACTTTaGCTAGGCTGGACTGAAGGGGTGCTGGAACTGTTTTGGCCTTGT +
Preference number: 1 (lower is better)
Translates to: CPTSAAVQYATSRRL*LGWTEGVLELFWPC
Trigger: ACAAGGCCAAAACAGTTCCAGCACCCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGCTGAGGTGGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 90 bp ATCACCCCTACAGCCCAGAAAATCAAAGGTGTCCTGGCCCATATTTaGATAGTGTTTAACAGTTGTAGAGATGGCCTCATGTCCCTCTGC +
Preference number: 1 (lower is better)
Translates to: ITPTAQKIKGVLAHI*IVFNSCRDGLMSLC
Trigger: GCAGAGGGACATGAGGCCATCTCTACAACTGTTAAACACTATGCAAATATGGGCCAGGACACCTTTGATTTTCTGGGCTGTAGGGGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 90 bp GAGAACAGGGTAAAATATCAGGACATAGAACACTGTCCTAGAGCCTaGGGAACAATAAACAGGATGAGTGGGATACAGGCAGGACTCATC +
Preference number: 1 (lower is better)
Translates to: ENRVKYQDIEHCPRA*GTINRMSGIQAGLI
Trigger: GATGAGTCCTGCCTGTATCCCACTCATCCTGTTTATTGTTCCCCAGGCTCTAGGACAGTGTTCTATGTCCTGATATTTTACCCTGTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 90 bp GACCGAAAAGCTGAATTTACTGTTCTGGAATGCTATTCTTTACCCTaGTTTCCTGTTATTAGTTCTCACACTATCACCCCTACAGCCCAG +
Preference number: 1 (lower is better)
Translates to: DRKAEFTVLECYSLP*FPVISSHTITPTAQ
Trigger: CTGGGCTGTAGGGGTGATAGTGTGAGAACTAATAACAGGAAAGCAGGGTAAAGAATAGCATTCCAGAACAGTAAATTCAGCTTTTCGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 90 bp AAGACCTATGGTGAAAAATGTGTTTTAAGAAACATCTCCTCAGGATaGGCAAACATTTCTGCTTACAAGAAACCAAGGTGTTCTCTCACC +
Preference number: 1 (lower is better)
Translates to: KTYGEKCVLRNISSG*ANISAYKKPRCSLT
Trigger: GGTGAGAGAACACCTTGGTTTCTTGTAAGCAGAAATGTTTGCTCATCCTGAGGAGATGTTTCTTAAAACACATTTTTCACCATAGGTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp CAGGCACTCAGCACTGAAACCCCAGAAGCCCTTGGTCACACAGAGGGAATGGCAAGACTTTGGCTAGGCTaGACTGAAGGGGTGCTGGAA +
Preference number: 2 (lower is better)
Translates to: QALSTETPEALGHTEGMARLWLG*TEGVLE
Trigger: TTCCAGCACCCCTTCAGTCCAGCCTAGCCAAAGTCT...TGCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTTTCAGTGCTGAGTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR TCA 90 bp ATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCTGTCCCACCAGCTGCCTTCCCTaGAGCTCCATTGTATGCTCT +
Preference number: 2 (lower is better)
Translates to: IGNCPVVPSELGSGPCCPTSCLP*SSIVCS
Trigger: AGAGCATACAATGGAGCTTCAGGGAAGGCAGCTGGT...GGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp ATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCTGTCCCGGACTGAAGGGGTGCTaGAACTGTTTTGGCCTTGTC +
Preference number: 2 (lower is better)
Translates to: IGNCPVVPSELGSGPCCPGLKGC*NCFGLV
Trigger: GACAAGGCCAAAACAGTTCCAGCACCCCTTCAGTCC...GGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp AATAAAATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCTGCACGCGCACAGGCTaGCATCAGAGGGCTCCTTAC +
Preference number: 2 (lower is better)
Translates to: NKIGNCPVVPSELGSGPCCTRTG*HQRAPY
Trigger: GTAAGGAGCCCTCTGATGGCAGCCTGTGCGCGTGCA...GCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAATTTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp CTGCTGGGTGCCAGTGCGCGAGACAGAGCCGCTCAACACCCAACCTCCAAACCTCTGAATTTACTGTTCTaGAATGCTATTCTTTACCCT +
Preference number: 2 (lower is better)
Translates to: LLGASARDRAAQHPTSKPLNLLF*NAILYP
Trigger: AGGGTAAAGAATAGCATTCCAGAACAGTAAATTCAG...AGGTTTGGAGGTTGGGTGTTGAGCGGCTCTGTCTCGCGCACTGGCACCCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGGGAACTGAGCTGAAATaGAATGTGAACTTCAGGTCA +
Preference number: 2 (lower is better)
Translates to: TARPSPELEGNSQQGPSEGTELK*NVNFRS
Trigger: TGACCTGAAGTTCACATTCCATTTCAGCTCAGTTCC...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR TCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGCCTGGTGGAGTGAACTaGAATGCTGTATTTTGTATA +
Preference number: 2 (lower is better)
Translates to: TARPSPELEGNSQQGPSEPGGVN*NAVFCI
Trigger: TATACAAAATACAGCATTTCAGTTCACTCCACCAGG...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR TCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGATTCTCCTGGTGGAGTaGACTGAAATGCTGTATTTT +
Preference number: 2 (lower is better)
Translates to: TARPSPELEGNSQQGPSEILLVE*TEMLYF
Trigger: AAAATACAGCATTTCAGTTCACTCCACCAGGAGAAT...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp CAGGCACTCAGCACTGAAACCCCAGAAGCCCTTGGTCACACAGAGGGAATGGCAGTCCTGGCCCATATTTaGATAGTGTTTAACAGTTGT +
Preference number: 2 (lower is better)
Translates to: QALSTETPEALGHTEGMAVLAHI*IVFNSC
Trigger: ACAACTGTTAAACACTATGCAAATATGGGCCAGGAC...TGCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTTTCAGTGCTGAGTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp AACGGTGACTTTCAGGGGTATTGCTTCAATGCTGCATTCCAAGCAGGAGTCTCAGGTAAGAGTAGAAAGTaGCAGCTGTCTGGGGACACT +
Preference number: 2 (lower is better)
Translates to: NGDFQGYCFNAAFQAGVSGKSRK*QLSGDT
Trigger: AGTGTCCCCAGACAGCTGGCACTTTCTACTCTTACC...TGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGTGCTATTCTTTACCCTaGTTTCCTGTTATTAGTTCT +
Preference number: 2 (lower is better)
Translates to: TARPSPELEGNSQQGPSECYSLP*FPVISS
Trigger: AGAACTAATAACAGGAAAGCAGGGTAAAGAATAGCA...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGTTTACTGTTCTGGAATaGTATTCTTTACCCTGCTTT +
Preference number: 2 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGFTVLE*YSLPCF
Trigger: AAAGCAGGGTAAAGAATAGCATTCCAGAACAGTAAA...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR TCA 90 bp TACAAGGAGAACAGGGTAAAATATCAGGACATAGAACACTGTCCTAGAGCCTGGGGTCATCATGGCTCCTaGAGAAACTGTAACTTAAGC +
Preference number: 2 (lower is better)
Translates to: YKENRVKYQDIEHCPRAWGHHGS*RNCNLS
Trigger: GCTTAAGTTACAGTTTCTTCAGGAGCCATGATGACC...CCAGGCTCTAGGACAGTGTTCTATGTCCTGATATTTTACCCTGTTCTCCTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp AACGGTGACTTTCAGGGGTATTGCTTCAATGCTGCATTCCAAGCAGGAGTCTCACAAGATACAAAAGTCTaGAGGCCAAAACTTGTGTTC +
Preference number: 2 (lower is better)
Translates to: NGDFQGYCFNAAFQAGVSQDTKV*RPKLVF
Trigger: GAACACAAGTTTTGGCCTCCAGACTTTTGTATCTTG...TGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp GTAGACACAGCTCACAAAATAAGCAGGAATAAGGGTCAGAAAATCTATTTGCATAACCCCAGAAGCCCTTaGTCACACAGAGGGAATGGC +
Preference number: 2 (lower is better)
Translates to: VDTAHKISRNKGQKIYLHNPRSP*SHRGNG
Trigger: GCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTT...ATGCAAATAGATTTTCTGACCCTTATTCCTGCTTATTTTGTGAGCTGTGTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp TGCCTCCTATTCTTTCTCAGTTATGAAGCGTCCTTAACTTTATATAGCAGAATACTGCCAGGACTCAGGTaGCTGAGGCAAAAGACCACA +
Preference number: 2 (lower is better)
Translates to: CLLFFLSYEASLTLYSRILPGLR*LRQKTT
Trigger: TGTGGTCTTTTGCCTCAGGCACCTGAGTCCTGGCAG...TATTCTGCTATATAAAGTTAAGGACGCTTCATAACTGAGAAAGAATAGGAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR TCA 90 bp TGCCTCCTATTCTTTCTCAGTTATGAAGCGTCCTTAACTTTATATAGCAGAATATCCAGTTGTTCCCTCTaGATTGGGAAGTGGTCCCTG +
Preference number: 2 (lower is better)
Translates to: CLLFFLSYEASLTLYSRISSCSL*IGKWSL
Trigger: CAGGGACCACTTCCCAATTCAGAGGGAACAACTGGA...TATTCTGCTATATAAAGTTAAGGACGCTTCATAACTGAGAAAGAATAGGAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp GTAGACACAGCTCACAAAATAAGCAGGAATAAGGGTCAGAAAATCTATTTGCATGAGAGGCAAGATGCTTaGAGGGAGTCTGGTAAAGTT +
Preference number: 2 (lower is better)
Translates to: VDTAHKISRNKGQKIYLHERQDA*RESGKV
Trigger: AACTTTACCAGACTCCCTGCAAGCATCTTGCCTCTC...ATGCAAATAGATTTTCTGACCCTTATTCCTGCTTATTTTGTGAGCTGTGTCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp CCTACTTCTTGTTATCAAAATGTAGACACAGCTCACAAAATAAGCAGGAATAAGAGGCCTCTAATGCCATaGCATCACGGTCTCTGCAAA +
Preference number: 2 (lower is better)
Translates to: PTSCYQNVDTAHKISRNKRPLMP*HHGLCK
Trigger: TTTGCAGAGACCGTGATGCCATGGCATTAGAGGCCT...CTTATTCCTGCTTATTTTGTGAGCTGTGTCTACATTTTGATAACAAGAAGTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR GCA 90 bp GTAGACACAGCTCACAAAATAAGCAGGAATAAGGGTCAGAAAATCTATTTGCATTGGCATCACGGTCTCTaGAAACCTGAGTTTAAAGTG +
Preference number: 2 (lower is better)
Translates to: VDTAHKISRNKGQKIYLHWHHGL*KPEFKV
Trigger: CACTTTAAACTCAGGTTTGCAGAGACCGTGATGCCA...ATGCAAATAGATTTTCTGACCCTTATTCCTGCTTATTTTGTGAGCTGTGTCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CCA 90 bp TGCCTCCTATTCTTTCTCAGTTATGAAGCGTCCTTAACTTTATATAGCAGAATAGTAGTATTCTCCTGGTaGAGTGAACTGAAATGCTGT +
Preference number: 2 (lower is better)
Translates to: CLLFFLSYEASLTLYSRIVVFSW*SELKCC
Trigger: ACAGCATTTCAGTTCACTCCACCAGGAGAATACTAC...TATTCTGCTATATAAAGTTAAGGACGCTTCATAACTGAGAAAGAATAGGAGGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp CCAGGCTGGCCTCGAACTCAGAAGTCCGCCTGCCTCTaGCTCCTGAGTGCTGGGATTAAAGGCGTGCGTCAC +
Preference number: 3 (lower is better)
Translates to: PGWPRTQKSACL*LLSAGIKGVRH
Trigger: GTGACGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGACTTCTGAGTTCGAGGCCAGCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp CAGAGGGCTCCTTACCATGCTGAAGATACTGCTGGGTaGCAGTGCGCGAGACAGAGCCGCTCAACACCCAAC +
Preference number: 3 (lower is better)
Translates to: QRAPYHAEDTAG*QCARQSRSTPN
Trigger: GTTGGGTGTTGAGCGGCTCTGTCTCGCGCACTGGCACCCAGCAGTATCTTCAGCATGGTAAGGAGCCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp GCTCCTTACCATGCTGAAGATACTGCTGGGTGCCAGTaGGCGAGACAGAGCCGCTCAACACCCAACCTCCAA +
Preference number: 3 (lower is better)
Translates to: APYHAEDTAGCQ*ARQSRSTPNLQ
Trigger: TTGGAGGTTGGGTGTTGAGCGGCTCTGTCTCGCGCACTGGCACCCAGCAGTATCTTCAGCATGGTAAGGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 72 bp CTGAAACCCCAGAAGCCCTTGGTCACACAGAGGGAATaGCACAGAGGAACTGCAAGCCTCAGCATCCAACTC +
Preference number: 3 (lower is better)
Translates to: LKPQKPLVTQRE*HRGTASLSIQL
Trigger: GAGTTGGATGCTGAGGCTTGCAGTTCCTCTGTGCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp GTAAGCATCAGTCTAAGAAGACAAGAAAGCCCCGCTTaGCGTCACAAAGGACTCACCCCTTGCCCTCTGTGC +
Preference number: 3 (lower is better)
Translates to: VSISLRRQESPA*RHKGLTPCPLC
Trigger: GCACAGAGGGCAAGGGGTGAGTCCTTTGTGACGGCAAGCGGGGCTTTCTTGTCTTCTTAGACTGATGCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp TGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTaGTGTCCCACCTCAGCAGCTGTCCAATATGCCACA +
Preference number: 3 (lower is better)
Translates to: CPVVPSELGSGP*CPTSAAVQYAT
Trigger: TGTGGCATATTGGACAGCTGCTGAGGTGGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 72 bp TGGCTAGGCTGGACTGAAGGGGTGCTGGAACTGTTTTaGCCTTGTCAACCCGCTCCTGTAAACAGTAATGCA +
Preference number: 3 (lower is better)
Translates to: WLGWTEGVLELF*PCQPAPVNSNA
Trigger: TGCATTACTGTTTACAGGAGCGGGTTGACAAGGCCAAAACAGTTCCAGCACCCCTTCAGTCCAGCCTAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CAA 90 bp AACGGTGACTTTCAGGGGTATTGCTTCAATGCTGCATTCCAAGCAGGAGTCTCACAAAGGACTCACCCCTaGCCCTCTGTGCTGCTCTCT +
Preference number: 3 (lower is better)
Translates to: NGDFQGYCFNAAFQAGVSQRTHP*PSVLLS
Trigger: AGAGAGCAGCACAGAGGGCAAGGGGTGAGTCCTTTG...TGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CAA 90 bp CAGGCACTCAGCACTGAAACCCCAGAAGCCCTTGGTCACACAGAGGGAATGGCATTCCCTGAAGCTCCATaGTATGCTCTGAGAGTAAGA +
Preference number: 3 (lower is better)
Translates to: QALSTETPEALGHTEGMAFPEAP*YALRVR
Trigger: TCTTACTCTCAGAGCATACAATGGAGCTTCAGGGAA...TGCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTTTCAGTGCTGAGTGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 72 bp GTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTaGACTGAAGGGGTGCTGGAACTGTTTTGGCCTTGT +
Preference number: 3 (lower is better)
Translates to: VQYATSRRLWLG*TEGVLELFWPC
Trigger: ACAAGGCCAAAACAGTTCCAGCACCCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 72 bp GCGAGACAGAGCCGCTCAACACCCAACCTCCAAACCTaGCCCTCTTTTAATAGTAGAAGTACACAACCAGCT +
Preference number: 3 (lower is better)
Translates to: ARQSRSTPNLQT*PSFNSRSTQPA
Trigger: AGCTGGTTGTGTACTTCTACTATTAAAAGAGGGTCAGGTTTGGAGGTTGGGTGTTGAGCGGCTCTGTCTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 72 bp ATAAAATTGGAAACTGTCCAGTTGTTCCCTCTGAATTaGGAAGTGGTCCCTGCTGTCCCACCTCAGCAGCTG +
Preference number: 3 (lower is better)
Translates to: IKLETVQLFPLN*EVVPAVPPQQL
Trigger: CAGCTGCTGAGGTGGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAATTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp ACCTCAACTGGGATGAACGGTGACTTTCAGGGGTATTaGTTCAATGCTGCATTCCAAGCAGGAGTCTCAAGA +
Preference number: 3 (lower is better)
Translates to: TSTGMNGDFQGY*FNAAFQAGVSR
Trigger: TCTTGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTTCATCCCAGTTGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CAA 90 bp GTAGACACAGCTCACAAAATAAGCAGGAATAAGGGTCAGAAAATCTATTTGCATGGTGCTGGAACTGTTTaGGCCTTGTCAACCCGCTCC +
Preference number: 3 (lower is better)
Translates to: VDTAHKISRNKGQKIYLHGAGTV*ALSTRS
Trigger: GGAGCGGGTTGACAAGGCCAAAACAGTTCCAGCACC...ATGCAAATAGATTTTCTGACCCTTATTCCTGCTTATTTTGTGAGCTGTGTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 72 bp CCAACTGTAGTTTTCTACCTCAACTGGGATGAACGGTaGCTTTCAGGGGTATTGCTTCAATGCTGCATTCCA +
Preference number: 3 (lower is better)
Translates to: PTVVFYLNWDER*LSGVLLQCCIP
Trigger: TGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTTCATCCCAGTTGAGGTAGAAAACTACAGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR-3UTR CAA 90 bp CCTACTTCTTGTTATCAAAATGTAGACACAGCTCACAAAATAAGCAGGAATAAGCATCTGAGGCACTTGTaGCAGGCTCGCCCATGGAAC +
Preference number: 3 (lower is better)
Translates to: PTSCYQNVDTAHKISRNKHLRHL*QARPWN
Trigger: GTTCCATGGGCGAGCCTGCAACAAGTGCCTCAGATG...CTTATTCCTGCTTATTTTGTGAGCTGTGTCTACATTTTGATAACAAGAAGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp ACAGCCCAGAAAATCAAAGGTGTCCTGGCCCATATTTaGATAGTGTTTAACAGTTGTAGAGATGGCCTCATG +
Preference number: 3 (lower is better)
Translates to: TAQKIKGVLAHI*IVFNSCRDGLM
Trigger: CATGAGGCCATCTCTACAACTGTTAAACACTATGCAAATATGGGCCAGGACACCTTTGATTTTCTGGGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 72 bp CTTCAGAAGAAAAGGAAAGCTTACTCCAAACTTTTGTaGATCAGGGTGTTGAGGCCTCTAATGCCATGGCAT +
Preference number: 3 (lower is better)
Translates to: LQKKRKAYSKLL*IRVLRPLMPWH
Trigger: ATGCCATGGCATTAGAGGCCTCAACACCCTGATTCACAAAAGTTTGGAGTAAGCTTTCCTTTTCTTCTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp GCTGAATTTACTGTTCTGGAATGCTATTCTTTACCCTaGTTTCCTGTTATTAGTTCTCACACTATCACCCCT +
Preference number: 3 (lower is better)
Translates to: AEFTVLECYSLP*FPVISSHTITP
Trigger: AGGGGTGATAGTGTGAGAACTAATAACAGGAAAGCAGGGTAAAGAATAGCATTCCAGAACAGTAAATTCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 72 bp AAAGTTAACACACAGGCACGCTGTGCTGATGTGACATaGATAAAAACAGTATTCTCACATCAAGTTCATCTG +
Preference number: 3 (lower is better)
Translates to: KVNTQARCADVT*IKTVFSHQVHL
Trigger: CAGATGAACTTGATGTGAGAATACTGTTTTTATTCATGTCACATCAGCACAGCGTGCCTGTGTGTTAACTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp TTTAAGAAACATCTCCTCAGGATGAGCAAACATTTCTaGTTACAAGAAACCAAGGTGTTCTCTCACCTACTT +
Preference number: 3 (lower is better)
Translates to: FKKHLLRMSKHF*LQETKVFSHLL
Trigger: AAGTAGGTGAGAGAACACCTTGGTTTCTTGTAAGCAGAAATGTTTGCTCATCCTGAGGAGATGTTTCTTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CCA 72 bp GATGGGAGAATGACCGAAAAGCTGAATTTACTGTTCTaGAATGCTATTCTTTACCCTGCTTTCCTGTTATTA +
Preference number: 3 (lower is better)
Translates to: DGRMTEKLNLLF*NAILYPAFLLL
Trigger: TAATAACAGGAAAGCAGGGTAAAGAATAGCATTCCAGAACAGTAAATTCAGCTTTTCGGTCATTCTCCCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR GCA 72 bp GAGAATGACCGAAAAGCTGAATTTACTGTTCTGGAATaGTATTCTTTACCCTGCTTTCCTGTTATTAGTTCT +
Preference number: 3 (lower is better)
Translates to: ENDRKAEFTVLE*YSLPCFPVISS
Trigger: AGAACTAATAACAGGAAAGCAGGGTAAAGAATAGCATTCCAGAACAGTAAATTCAGCTTTTCGGTCATTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR TCA 72 bp GATAAGAAAGACACAAAGCATCTTCTAGCAAAAGTATaGATATTAACTGTGGTCTTCAGCAAGACACATTTC +
Preference number: 3 (lower is better)
Translates to: DKKDTKHLLAKV*ILTVVFSKTHF
Trigger: GAAATGTGTCTTGCTGAAGACCACAGTTAATATTCATACTTTTGCTAGAAGATGCTTTGTGTCTTTCTTATC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGAGGTGCCTGCACAGTTaGCCAGCATGTCCACAGGAC +
Preference number: 4 (lower is better)
Translates to: TARPSPELEGNSQQGPSERCLHS*PACPQD
Trigger: GTCCTGTGGACATGCTGGTCAACTGTGCAGGCACCT...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp CAGGCACTCAGCACTGAAACCCCAGAAGCCCTTGGTCACACAGAGGGAATGGCAGTGGGTAGGCCACAGTaGCGTACACATTGTACGGCT +
Preference number: 4 (lower is better)
Translates to: QALSTETPEALGHTEGMAVGRPQ*RTHCTA
Trigger: AGCCGTACAATGTGTACGTCACTGTGGCCTACCCAC...TGCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTTTCAGTGCTGAGTGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGACACAAACACGATCCTaGCCACCCGTCGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: TARPSPELEGNSQQGPSETQTRS*PPVAPS
Trigger: TGAAGGAGCGACGGGTGGGCAGGATCGTGTTTGTGT...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGCCCAGCTGTCCTGCCTaGGAGGACACAAACACGATC +
Preference number: 4 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGPSCPA*EDTNTI
Trigger: GATCGTGTTTGTGTCCTCTCAGGCAGGACAGCTGGG...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGGGAAAAGGCCCATGGTaGCCACCTGCTGGAGTCCTT +
Preference number: 4 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGGKGPW*PPAGVL
Trigger: AAGGACTCCAGCAGGTGGTCACCATGGGCCTTTTCC...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGCATGGTAGTGATTACTaGCCTGCTGGGGTACACGCT +
Preference number: 4 (lower is better)
Translates to: TARPSPELEGNSQQGPSEHGSDY*PAGVHA
Trigger: AGCGTGTACCCCAGCAGGGCAGTAATCACTACCATG...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp CAGGCACTCAGCACTGAAACCCCAGAAGCCCTTGGTCACACAGAGGGAATGGCACTCTTCAAACTTTCCTaGCATAGAGGTGCCTGCACA +
Preference number: 4 (lower is better)
Translates to: QALSTETPEALGHTEGMALFKLS*HRGACT
Trigger: TGTGCAGGCACCTCTATGTCAGGAAAGTTTGAAGAG...TGCCATTCCCTCTGTGTGACCAAGGGCTTCTGGGGTTTCAGTGCTGAGTGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGTTTGGCCACCTGCTCTaGTTTGCAAATAGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: TARPSPELEGNSQQGPSEFGHLL*FANSCG
Trigger: ACCACAGCTATTTGCAAACCAGAGCAGGTGGCCAAA...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CAA 72 bp TGTAAGCATCAGTCTAAGAAGACAAGAAAGCCCCGCTaGCCGTCACAAAGGACTCACCCCTTGCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: CKHQSKKTRKPR*PSQRTHPLPSV
Trigger: CACAGAGGGCAAGGGGTGAGTCCTTTGTGACGGCAAGCGGGGCTTTCTTGTCTTCTTAGACTGATGCTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CCA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGATGGTGACCACCTGCTaGAGTCCTTCAGTGATGGAA +
Preference number: 4 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGMVTTC*SPSVME
Trigger: TTCCATCACTGAAGGACTCCAGCAGGTGGTCACCAT...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGATTTGTTTGGCCACCTaGTCTGGTTTGCAAATAGCT +
Preference number: 4 (lower is better)
Translates to: TARPSPELEGNSQQGPSEICLAT*SGLQIA
Trigger: AGCTATTTGCAAACCAGAGCAGGTGGCCAAACAAAT...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp TACAAAAGTCTGGAGGCCAAAACTTGTGTTCCATTAGCAGCACACTGTTCAAATGCTGGAGTCCTTCAGTaGTGGAAGTCACCGGGGCCA +
Preference number: 4 (lower is better)
Translates to: YKSLEAKTCVPLAAHCSNAGVLQ*WKSPGP
Trigger: TGGCCCCGGTGACTTCCATCACTGAAGGACTCCAGC...ATTTGAACAGTGTGCTGCTAATGGAACACAAGTTTTGGCCTCCAGACTTTTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp AATAAAATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCCAGTCCCAGCTGTCCTaGCTGAGAGGACACAAACAC +
Preference number: 4 (lower is better)
Translates to: NKIGNCPVVPSELGSGPCQSQLS*LRGHKH
Trigger: GTGTTTGTGTCCTCTCAGGCAGGACAGCTGGGACTG...GCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAATTTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp TACAAGGAGAACAGGGTAAAATATCAGGACATAGAACACTGTCCTAGAGCCTGGCCCATGGTGACCACCTaGTGGAGTCCTTCAGTGATG +
Preference number: 4 (lower is better)
Translates to: YKENRVKYQDIEHCPRAWPMVTT*WSPSVM
Trigger: CATCACTGAAGGACTCCAGCAGGTGGTCACCATGGG...CCAGGCTCTAGGACAGTGTTCTATGTCCTGATATTTTACCCTGTTCTCCTTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CAA 72 bp AATAAAATTGGAAACTGTCCAGTTGTTCCCTCTGAATaGGGAAGTGGTCCCTGCTGTCCCACCTCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: NKIGNCPVVPSE*GSGPCCPTSAA
Trigger: AGCTGCTGAGGTGGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAATTTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp TCTCACACTATCACCCCTACAGCCCAGAAAATCAAAGGTGTCCTGGCCCATATTTTGAGACACATCAACTaGGATACACAGCACCACCTG +
Preference number: 4 (lower is better)
Translates to: SHTITPTAQKIKGVLAHILRHIN*DTQHHL
Trigger: CAGGTGGTGCTGTGTATCTCAGTTGATGTGTCTCAA...AATATGGGCCAGGACACCTTTGATTTTCTGGGCTGTAGGGGTGATAGTGTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGAACCAGAGTTATAAATaGTCCTTGTTTGTAGCACTC +
Preference number: 4 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGNQSYK*SLFVAL
Trigger: GAGTGCTACAAACAAGGAGCATTTATAACTCTGGTT...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp ATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCTGTCCCCTTGTCCTCATTTCGTaGAACCAGAGTTATAAATGC +
Preference number: 4 (lower is better)
Translates to: IGNCPVVPSELGSGPCCPLVLIS*NQSYKC
Trigger: GCATTTATAACTCTGGTTGCACGAAATGAGGACAAG...GGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp AACGGTGACTTTCAGGGGTATTGCTTCAATGCTGCATTCCAAGCAGGAGTCTCAACCCAGCTTCTCTTGTaGCTGCTTTATGACATTCTC +
Preference number: 4 (lower is better)
Translates to: NGDFQGYCFNAAFQAGVSTQLLL*LLYDIL
Trigger: GAGAATGTCATAAAGCAGGCACAAGAGAAGCTGGGT...TGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp AACGGTGACTTTCAGGGGTATTGCTTCAATGCTGCATTCCAAGCAGGAGTCTCACTTGTATGGCATCTTTaGCAATTTGTTTGGCCACCT +
Preference number: 4 (lower is better)
Translates to: NGDFQGYCFNAAFQAGVSLVWHL*QFVWPP
Trigger: AGGTGGCCAAACAAATTGTCAAAGATGCCATACAAG...TGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
3UTR CAA 72 bp AGAAGTACACAACCAGCTGCCTTCCCTGAAGCTCCATaGTATGCTCTGAGAGTAAGAAGGTCATGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: RSTQPAAFPEAP*YALRVRRSCFS
Trigger: TGAAAAGCATGACCTTCTTACTCTCAGAGCATACAATGGAGCTTCAGGGAAGGCAGCTGGTTGTGTACTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp TACAAAAGTCTGGAGGCCAAAACTTGTGTTCCATTAGCAGCACACTGTTCAAATTGCTGGGGTACACGCTaGCCAGGTAATTTATGCTCA +
Preference number: 4 (lower is better)
Translates to: YKSLEAKTCVPLAAHCSNCWGTR*PGNLCS
Trigger: TGAGCATAAATTACCTGGGCAGCGTGTACCCCAGCA...ATTTGAACAGTGTGCTGCTAATGGAACACAAGTTTTGGCCTCCAGACTTTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp AATAAAATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCCATCTGCAGAGCTTCTaGCAATCCTCTTATGGCAAA +
Preference number: 4 (lower is better)
Translates to: NKIGNCPVVPSELGSGPCHLQSF*QSSYGK
Trigger: TTTGCCATAAGAGGATTGGCAGAAGCTCTGCAGATG...GCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAATTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp CCTACTTCTTGTTATCAAAATGTAGACACAGCTCACAAAATAAGCAGGAATAAGAATAGCTGTGGTCTCTaGGATAAGCCGGGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: PTSCYQNVDTAHKISRNKNSCGL*DKPGLQ
Trigger: CTGGAGACCCGGCTTATCTCAGAGACCACAGCTATT...CTTATTCCTGCTTATTTTGTGAGCTGTGTCTACATTTTGATAACAAGAAGTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp TACAAAAGTCTGGAGGCCAAAACTTGTGTTCCATTAGCAGCACACTGTTCAAATCAGCATGTACCCATCTaGGCCAATAGAACTGTTAAA +
Preference number: 4 (lower is better)
Translates to: YKSLEAKTCVPLAAHCSNQHVPI*ANRTVK
Trigger: TTTAACAGTTCTATTGGCTCAGATGGGTACATGCTG...ATTTGAACAGTGTGCTGCTAATGGAACACAAGTTTTGGCCTCCAGACTTTTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR TCA 90 bp CCTACTTCTTGTTATCAAAATGTAGACACAGCTCACAAAATAAGCAGGAATAAGTATGGCAAACTTGGATaGAGAGTAGGCCGTGAAACC +
Preference number: 4 (lower is better)
Translates to: PTSCYQNVDTAHKISRNKYGKLG*RVGRET
Trigger: GGTTTCACGGCCTACTCTTCATCCAAGTTTGCCATA...CTTATTCCTGCTTATTTTGTGAGCTGTGTCTACATTTTGATAACAAGAAGTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CCA 90 bp GTAGACACAGCTCACAAAATAAGCAGGAATAAGGGTCAGAAAATCTATTTGCATCTGCCAATCCTCTTATaGCAAACTTGGATGAAGAGT +
Preference number: 4 (lower is better)
Translates to: VDTAHKISRNKGQKIYLHLPILL*QTWMKS
Trigger: ACTCTTCATCCAAGTTTGCCATAAGAGGATTGGCAG...ATGCAAATAGATTTTCTGACCCTTATTCCTGCTTATTTTGTGAGCTGTGTCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR GCA 90 bp TGCCTCCTATTCTTTCTCAGTTATGAAGCGTCCTTAACTTTATATAGCAGAATAAGCTTCTCTTGTGCCTaGTTTATGACATTCTCCACT +
Preference number: 4 (lower is better)
Translates to: CLLFFLSYEASLTLYSRISFSCA*FMTFST
Trigger: AGTGGAGAATGTCATAAAGCAGGCACAAGAGAAGCT...TATTCTGCTATATAAAGTTAAGGACGCTTCATAACTGAGAAAGAATAGGAGGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 90 bp CCTCAGCCAGCCCCGGCGTGTCGGTGTCTGGTGGGTAGGCCACAGTaGCGTACACATTGTACGGCTTCACCTCCATCTGCAGAGCTTCTG +
Preference number: 5 (lower is better)
Translates to: PQPAPACRCLVGRPQ*RTHCTASPPSAELL
Trigger: CAGAAGCTCTGCAGATGGAGGTGAAGCCGTACAATGTGTACGTCACTGTGGCCTACCCACCAGACACCGACACGCCGGGGCTGGCTGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGGGCAGCGCGAGGGGCTaGGGACTGATGAGCGGCGAC +
Preference number: 5 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGGSARG*GLMSGD
Trigger: GTCGCCGCTCATCAGTCCCAAGCCCCTCGCGCTGCC...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp ACAGCAAGACCCAGTCCGGAACTAGAGGGTAACAGTCAGCAGGGGCCTTCTGAGGAGGTGCCTGCACAGTaGACCAGCATGTCCACAGGA +
Preference number: 5 (lower is better)
Translates to: TARPSPELEGNSQQGPSEEVPAQ*TSMSTG
Trigger: TCCTGTGGACATGCTGGTCAACTGTGCAGGCACCTC...CTCAGAAGGCCCCTGCTGACTGTTACCCTCTAGTTCCGGACTGGGTCTTGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 90 bp CTTCTGCCAATCCTCTTATGGCAAACTTGGATGAAGAGTAGGCCGTaGAACCAAACAGTCCCAGCTGTCCTGCCTGAGAGGACACAAACA +
Preference number: 5 (lower is better)
Translates to: LLPILLWQTWMKSRP*NQTVPAVLPERTQT
Trigger: TGTTTGTGTCCTCTCAGGCAGGACAGCTGGGACTGTTTGGTTTCACGGCCTACTCTTCATCCAAGTTTGCCATAAGAGGATTGGCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 90 bp CACCGGGGCCATCCCACAGGTCAGGGAGGACAGCATGTACCCATCTaGGCCAATAGAACTGTTAAAATTTCCTTGTATGGCATCTTTGAC +
Preference number: 5 (lower is better)
Translates to: HRGHPTGQGGQHVPI*ANRTVKISLYGIFD
Trigger: GTCAAAGATGCCATACAAGGAAATTTTAACAGTTCTATTGGCTCAGATGGGTACATGCTGTCCTCCCTGACCTGTGGGATGGCCCCGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp ATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCTGTCCCAGGACCCAGCTTCTCTaGTGCCTGCTTTATGACATT +
Preference number: 5 (lower is better)
Translates to: IGNCPVVPSELGSGPCCPRTQLL*CLLYDI
Trigger: AATGTCATAAAGCAGGCACAAGAGAAGCTGGGTCCT...GGGACAGCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp AACGGTGACTTTCAGGGGTATTGCTTCAATGCTGCATTCCAAGCAGGAGTCTCAGGCATCTTTGACAATTaGTTTGGCCACCTGCTCTGG +
Preference number: 5 (lower is better)
Translates to: NGDFQGYCFNAAFQAGVSGIFDN*FGHLLW
Trigger: CCAGAGCAGGTGGCCAAACAAATTGTCAAAGATGCC...TGAGACTCCTGCTTGGAATGCAGCATTGAAGCAATACCCCTGAAAGTCACCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp GCAGCTGTCCAATATGCCACAAGTCGTAGACTTTGGCTAGGCTGGACTGAAGGGAGTTATAAATGCTCCTaGTTTGTAGCACTCAATAGC +
Preference number: 5 (lower is better)
Translates to: AAVQYATSRRLWLGWTEGSYKCS*FVALNS
Trigger: GCTATTGAGTGCTACAAACAAGGAGCATTTATAACT...CCCTTCAGTCCAGCCTAGCCAAAGTCTACGACTTGTGGCATATTGGACAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp TACAAGGAGAACAGGGTAAAATATCAGGACATAGAACACTGTCCTAGAGCCTGGGGTAAAACAAGGCAATaGTTCGGAAAAGGCCCATGG +
Preference number: 5 (lower is better)
Translates to: YKENRVKYQDIEHCPRAWGKTRQ*FGKGPW
Trigger: CCATGGGCCTTTTCCGAACAATTGCCTTGTTTTACC...CCAGGCTCTAGGACAGTGTTCTATGTCCTGATATTTTACCCTGTTCTCCTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp GACCCTCTTTTAATAGTAGAAGTACACAACCAGCTGCCTTCCCTGAAGCTCCATCACAGCACCACCTGTTaGTCATTAATAGAGTGCTTT +
Preference number: 5 (lower is better)
Translates to: DPLLIVEVHNQLPSLKLHHSTTC*SLIECF
Trigger: AAAGCACTCTATTAATGACAAACAGGTGGTGCTGTG...ATGGAGCTTCAGGGAAGGCAGCTGGTTGTGTACTTCTACTATTAAAAGAGGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS-3UTR CAA 90 bp AATAAAATTGGAAACTGTCCAGTTGTTCCCTCTGAATTGGGAAGTGGTCCCTGCCCTTGTATGGCATCTTaGACAATTTGTTTGGCCACC +
Preference number: 5 (lower is better)
Translates to: NKIGNCPVVPSELGSGPCPCMAS*TICLAT
Trigger: GGTGGCCAAACAAATTGTCAAAGATGCCATACAAGG...GCAGGGACCACTTCCCAATTCAGAGGGAACAACTGGACAGTTTCCAATTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS GCA 90 bp TTAAAATTTCCTTGTATGGCATCTTTGACAATTTGTTTGGCCACCTaGTCTGGTTTGCAAATAGCTGTGGTCTCTGAGATAAGCCGGGTC +
Preference number: 5 (lower is better)
Translates to: LKFPCMASLTICLAT*SGLQIAVVSEISRV
Trigger: GACCCGGCTTATCTCAGAGACCACAGCTATTTGCAAACCAGAGCAGGTGGCCAAACAAATTGTCAAAGATGCCATACAAGGAAATTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 72 bp GCCCCGGCGTGTCGGTGTCTGGTGGGTAGGCCACAGTaGCGTACACATTGTACGGCTTCACCTCCATCTGCA +
Preference number: 6 (lower is better)
Translates to: APACRCLVGRPQ*RTHCTASPPSA
Trigger: TGCAGATGGAGGTGAAGCCGTACAATGTGTACGTCACTGTGGCCTACCCACCAGACACCGACACGCCGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS GCA 72 bp CCTGCCCACCCGTCGCTCCTTCATGGTAGTGATTACTaGCCTGCTGGGGTACACGCTGCCCAGGTAATTTAT +
Preference number: 6 (lower is better)
Translates to: PAHPSLLHGSDY*PAGVHAAQVIY
Trigger: ATAAATTACCTGGGCAGCGTGTACCCCAGCAGGGCAGTAATCACTACCATGAAGGAGCGACGGGTGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS GCA 72 bp AAGGCAATTGTTCGGAAAAGGCCCATGGTGACCACCTaGTGGAGTCCTTCAGTGATGGAAGTCACCGGGGCC +
Preference number: 6 (lower is better)
Translates to: KAIVRKRPMVTT*WSPSVMEVTGA
Trigger: GGCCCCGGTGACTTCCATCACTGAAGGACTCCAGCAGGTGGTCACCATGGGCCTTTTCCGAACAATTGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS CCA 72 bp GCAATTGTTCGGAAAAGGCCCATGGTGACCACCTGCTaGAGTCCTTCAGTGATGGAAGTCACCGGGGCCATC +
Preference number: 6 (lower is better)
Translates to: AIVRKRPMVTTC*SPSVMEVTGAI
Trigger: GATGGCCCCGGTGACTTCCATCACTGAAGGACTCCAGCAGGTGGTCACCATGGGCCTTTTCCGAACAATTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 72 bp GGCCACCTGCTCTGGTTTGCAAATAGCTGTGGTCTCTaGGATAAGCCGGGTCTCCAGGGGCTTCGTTTTGTT +
Preference number: 6 (lower is better)
Translates to: GHLLWFANSCGL*DKPGLQGLRFV
Trigger: AACAAAACGAAGCCCCTGGAGACCCGGCTTATCTCAGAGACCACAGCTATTTGCAAACCAGAGCAGGTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS CAA 90 bp CCTTGTATGGCATCTTTGACAATTTGTTTGGCCACCTGCTCTGGTTaGCAAATAGCTGTGGTCTCTGAGATAAGCCGGGTCTCCAGGGGC +
Preference number: 6 (lower is better)
Translates to: PCMASLTICLATCSG*QIAVVSEISRVSRG
Trigger: GCCCCTGGAGACCCGGCTTATCTCAGAGACCACAGCTATTTGCAAACCAGAGCAGGTGGCCAAACAAATTGTCAAAGATGCCATACAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 72 bp CAGAGCTTCTGCCAATCCTCTTATGGCAAACTTGGATaGAGAGTAGGCCGTGAAACCAAACAGTCCCAGCTG +
Preference number: 6 (lower is better)
Translates to: QSFCQSSYGKLG*RVGRETKQSQL
Trigger: CAGCTGGGACTGTTTGGTTTCACGGCCTACTCTTCATCCAAGTTTGCCATAAGAGGATTGGCAGAAGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS GCA 72 bp ACAGTGACGTACACATTGTACGGCTTCACCTCCATCTaGAGAGCTTCTGCCAATCCTCTTATGGCAAACTTG +
Preference number: 6 (lower is better)
Translates to: TVTYTLYGFTSI*RASANPLMANL
Trigger: CAAGTTTGCCATAAGAGGATTGGCAGAAGCTCTGCAGATGGAGGTGAAGCCGTACAATGTGTACGTCACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 72 bp CATCCCACAGGTCAGGGAGGACAGCATGTACCCATCTaGGCCAATAGAACTGTTAAAATTTCCTTGTATGGC +
Preference number: 6 (lower is better)
Translates to: HPTGQGGQHVPI*ANRTVKISLYG
Trigger: GCCATACAAGGAAATTTTAACAGTTCTATTGGCTCAGATGGGTACATGCTGTCCTCCCTGACCTGTGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 72 bp TGTCCACAGGACCCAGCTTCTCTTGTGCCTGCTTTATaGCATTCTCCACTTGGTTATAGTCTTGAGACACAT +
Preference number: 6 (lower is better)
Translates to: CPQDPASLVPAL*HSPLGYSLETH
Trigger: ATGTGTCTCAAGACTATAACCAAGTGGAGAATGTCATAAAGCAGGCACAAGAGAAGCTGGGTCCTGTGGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS GCA 72 bp GAGATACACAGCACCACCTGTTTGTCATTAATAGAGTaGTTTTCAATGTCTTTCTTCGCCTGCAGTAGCTTG +
Preference number: 6 (lower is better)
Translates to: EIHSTTCLSLIE*FSMSFFACSSL
Trigger: CAAGCTACTGCAGGCGAAGAAAGACATTGAAAAGCACTCTATTAATGACAAACAGGTGGTGCTGTGTATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS CAA 72 bp GTCCTCATTTCGTGCAACCAGAGTTATAAATGCTCCTaGTTTGTAGCACTCAATAGCAATGCACTTCCCAAT +
Preference number: 6 (lower is better)
Translates to: VLISCNQSYKCS*FVALNSNALPN
Trigger: ATTGGGAAGTGCATTGCTATTGAGTGCTACAAACAAGGAGCATTTATAACTCTGGTTGCACGAAATGAGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS TCA 72 bp ATTCTCCACTTGGTTATAGTCTTGAGACACATCAACTaGGATACACAGCACCACCTGTTTGTCATTAATAGA +
Preference number: 6 (lower is better)
Translates to: ILHLVIVLRHIN*DTQHHLFVINR
Trigger: TCTATTAATGACAAACAGGTGGTGCTGTGTATCTCAGTTGATGTGTCTCAAGACTATAACCAAGTGGAGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6
CDS CAA 72 bp CCAATAGAACTGTTAAAATTTCCTTGTATGGCATCTTaGACAATTTGTTTGGCCACCTGCTCTGGTTTGCAA +
Preference number: 6 (lower is better)
Translates to: PIELLKFPCMAS*TICLATCSGLQ
Trigger: TTGCAAACCAGAGCAGGTGGCCAAACAAATTGTCAAAGATGCCATACAAGGAAATTTTAACAGTTCTATTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010049.6