Pregenerated sensors for KDM4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053914Ensembl transcript IDs: ENSMUST00000058796.7, ENSMUST00000115647.3
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGCAGGAGTTAGCAGTTATCCAGAGGCTTGCCAAGTTCTGGAAGTaGATGGTGTGTTTAGGAGTTAGAACTGACCAGGAGCTCTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: EQELAVIQRLAKFWK*MVCLGVRTDQELSQ Trigger: CTGAGAGAGCTCCTGGTCAGTTCTAACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAACTGCTAACTCCTGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR TCA 90 bp | GTTCTGCTTCCTCTAGAGTTGGCCTTGAGCATGGGAGATCAGTGCTaGGCAGCCTCAGCTGAATTTAGCTTGCAGAAACTCAACAGTAGT | + |
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Preference number: 1 (lower is better) Translates to: VLLPLELALSMGDQC*AASAEFSLQKLNSS Trigger: ACTACTGTTGAGTTTCTGCAAGCTAAATTCAGCTGAGGCTGCTCAGCACTGATCTCCCATGCTCAAGGCCAACTCTAGAGGAAGCAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR-3UTR GCA 90 bp | ATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGGCCTTGGTATGGCCAATGTCCTaGAAACTCAGTCAAAACTAT | + |
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Preference number: 2 (lower is better) Translates to: MAEGEESVSVLLPLELALVWPMS*KLSQNY Trigger: ATAGTTTTGACTGAGTTTGCAGGACATTGGCCATAC...CAAGGCCAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR-3UTR GCA 90 bp | ATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCAACAGTAGTGACCAATaGAACCTCAGCTGGAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: IYFARNGRGGGECECSASNSSDQ*NLSWKS Trigger: GCTCTTCCAGCTGAGGTTGCATTGGTCACTACTGTT...GGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR CAA 90 bp | TTCTTTGTGAGGAGTAATCTAGCGGTCAAGAGTCAGACATTTATTTaGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: FFVRSNLAVKSQTFI*QEMAEGEESVSVLL Trigger: AAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAATGTCTGACTCTTGACCGCTAGATTACTCCTCACAAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR-3UTR GCA 90 bp | ATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCCAGCTGAATTTAGCTTaGAGAAACTCAACAGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: IYFARNGRGGGECECSASQLNLA*RNSTVV Trigger: CACTACTGTTGAGTTTCTGCAAGCTAAATTCAGCTG...GGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR TCA 72 bp | CCTCTAGAGTTGGCCTTGAGCATGGGAGATCAGTGCTaGGCAGCCTCAGCTGAATTTAGCTTGCAGAAACTC | + |
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Preference number: 3 (lower is better) Translates to: PLELALSMGDQC*AASAEFSLQKL Trigger: GAGTTTCTGCAAGCTAAATTCAGCTGAGGCTGCTCAGCACTGATCTCCCATGCTCAAGGCCAACTCTAGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR GCA 72 bp | GCTGGAAGAGCAGGAGTTAGCAGTTATCCAGAGGCTTaGCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: AGRAGVSSYPEA*QVLEVHGVFRS Trigger: ACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAACTGCTAACTCCTGCTCTTCCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| 3UTR GCA 72 bp | GAGATCAGTGCTGAGCAGCCTCAGCTGAATTTAGCTTaGAGAAACTCAACAGTAGTGACCAATGCAACCTCA | + |
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Preference number: 3 (lower is better) Translates to: EISAEQPQLNLA*RNSTVVTNATS Trigger: TGAGGTTGCATTGGTCACTACTGTTGAGTTTCTGCAAGCTAAATTCAGCTGAGGCTGCTCAGCACTGATCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | ATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGGCCTTGCAGGGAAGAGTTCCCTaGCCAGGCGCTCCAGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: MAEGEESVSVLLPLELALQGRVP*PGAPGA Trigger: GGCGCCTGGAGCGCCTGGCCAGGGAACTCTTCCCTG...CAAGGCCAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | CAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGTGCCTCAGGAAGGCCTaGCAGCCCTGGGAGCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: QEMAEGEESVSVLLPLELCLRKA*QPWELP Trigger: TGGCAGCTCCCAGGGCTGCCAGGCCTTCCTGAGGCA...CAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | GCTGAGCAGCCTCAGCTGAATTTAGCTTGCAGAAACTCAACAGTAGTGACCAATCCCCAGCCTCCTGGGTaGTGCGACCAAAGGGGATGC | + |
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Preference number: 4 (lower is better) Translates to: AEQPQLNLACRNSTVVTNPQPPG*CDQRGC Trigger: GCATCCCCTTTGGTCGCATCACCCAGGAGGCTGGGG...ATTGGTCACTACTGTTGAGTTTCTGCAAGCTAAATTCAGCTGAGGCTGCTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | ATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCGGCAGCCCTGGGAGCTaGCAGGGAAGAGTTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: IYFARNGRGGGECECSASGSPGS*QGRVPW Trigger: CCAGGGAACTCTTCCCTGGCAGCTCCCAGGGCTGCC...GGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | GTTATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTAGAAAGGCCTGGCAGCCCTaGGAGCTGCCAGGGAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: VIQRLAKFWKCMVCLGVRKAWQP*ELPGKS Trigger: ACTCTTCCCTGGCAGCTCCCAGGGCTGCCAGGCCTT...TCTAACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | ATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAAACTCCCCAGCCTCCTaGGTGATGCGACCAAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: ILQEMAEGEESVSVLLPLNSPAS*VMRPKG Trigger: CCCCTTTGGTCGCATCACCCAGGAGGCTGGGGAGTT...TAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | ACCTCAGCTGGAAGAGCAGGAGTTAGCAGTTATCCAGAGGCTTGCCAAGTTCTGCCAAGTTTTTCTTGGTaGTTTGGTCACCCGCCGGGT | + |
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Preference number: 4 (lower is better) Translates to: TSAGRAGVSSYPEACQVLPSFSW*FGHPPG Trigger: ACCCGGCGGGTGACCAAAGCACCAAGAAAAACTTGG...CAGAACTTGGCAAGCCTCTGGATAACTGCTAACTCCTGCTCTTCCAGCTGAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | TATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTTGGTCCACAACTGCCTaGTCTTGGCCACGTTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: YFARNGRGGGECECSASSWSTTA*SWPRFH Trigger: GTGGAAACGTGGCCAAGATCAGGCAGTTGTGGACCA...AGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | GCAGTTATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTCTGGAAGTTGCCTCTTaGCTGGAGCTCCATTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: AVIQRLAKFWKCMVCLGVLEVAS*LELHWR Trigger: CCTCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAG...AACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | ATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGGCCTTGCGCCCTCAATCACTATaGCACATTCCTGTTCCAATA | + |
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Preference number: 4 (lower is better) Translates to: MAEGEESVSVLLPLELALRPQSL*HIPVPI Trigger: TATTGGAACAGGAATGTGGCATAGTGATTGAGGGCG...CAAGGCCAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | GCAGTTATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTGGCCCTCCATTCTTTTaGTGGGATGACCTTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: AVIQRLAKFWKCMVCLGVGPPFF*WDDLGQ Trigger: CTGGCCAAGGTCATCCCACCAAAAGAATGGAGGGCC...AACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | AGTGCTGAGCAGCCTCAGCTGAATTTAGCTTGCAGAAACTCAACAGTAGTGACCGCCCCAAGTTTTTCTTaGTGCTTTGGTCACCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: SAEQPQLNLACRNSTVVTAPSFS*CFGHPP Trigger: CGGCGGGTGACCAAAGCACCAAGAAAAACTTGGGGC...GGTCACTACTGTTGAGTTTCTGCAAGCTAAATTCAGCTGAGGCTGCTCAGCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | ATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGGCCTTGGCTGAGTCAGACTTCTaGACATCATCACCTTTCACA | + |
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Preference number: 4 (lower is better) Translates to: MAEGEESVSVLLPLELALAESDF*TSSPFT Trigger: TGTGAAAGGTGATGATGTCCAGAAGTCTGACTCAGC...CAAGGCCAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | GTTATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTAGACTGGGGCTGAAGCTCTaGACTGGGGCTTGTGTCATC | + |
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Preference number: 4 (lower is better) Translates to: VIQRLAKFWKCMVCLGVRLGLKL*TGACVI Trigger: GATGACACAAGCCCCAGTCCAGAGCTTCAGCCCCAG...TCTAACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | ACCTCAGCTGGAAGAGCAGGAGTTAGCAGTTATCCAGAGGCTTGCCAAGTTCTGCTGCAATTTGGATTCTaGGCACATGTGGACTTCGTC | + |
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Preference number: 4 (lower is better) Translates to: TSAGRAGVSSYPEACQVLLQFGF*AHVDFV Trigger: GACGAAGTCCACATGTGCTCAGAATCCAAATTGCAG...CAGAACTTGGCAAGCCTCTGGATAACTGCTAACTCCTGCTCTTCCAGCTGAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | TCAACAGTAGTGACCAATGCAACCTCAGCTGGAAGAGCAGGAGTTAGCAGTTATACAGGTAGGGCGTGTTaGCGCCCTCAATCACTATGC | + |
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Preference number: 4 (lower is better) Translates to: STVVTNATSAGRAGVSSYTGRAC*RPQSLC Trigger: GCATAGTGATTGAGGGCGTCAACACGCCCTACCTGT...ATAACTGCTAACTCCTGCTCTTCCAGCTGAGGTTGCATTGGTCACTACTGTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | AGCAGTTATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTGGGTCTGGTACTTTTTaGTGTTGGCCAGCTCACGGT | + |
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Preference number: 4 (lower is better) Translates to: SSYPEACQVLEVHGVFRSGSGTF*CWPAHG Trigger: ACCGTGAGCTGGCCAACAGCAAAAAGTACCAGACCC...ACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAACTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | CAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGACTGAGATGCCACCTTaGCATAGTCAATCCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: QEMAEGEESVSVLLPLELTEMPP*HSQSTL Trigger: CAAGGTGGATTGACTATGGCAAGGTGGCATCTCAGT...CAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | ATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTAGAACTCTGCCTGCTGGAAGTTaGCTCTTGACTGGAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: IQRLAKFWKCMVCLGVRTLPAGS*LLTGAP Trigger: TGGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAG...AGTTCTAACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | TATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTCCCACATTCCACTGTTaGGTCTTCCCATCAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: YFARNGRGGGECECSASSPTFHC*VFPSNR Trigger: CCTGTTTGATGGGAAGACTCAACAGTGGAATGTGGG...AGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | TATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTTGTGTCATCTCTGCCTaGTGGAAGTTGCCTCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: YFARNGRGGGECECSASSCVISA*WKLPLD Trigger: GTCAAGAGGCAACTTCCAGCAGGCAGAGATGACACA...AGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | CAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTAGAGTTGCAAAGTGTAGGTAGTTaGTACTGTACAGGTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: QEMAEGEESVSVLLPLELQSVGS*YCTGPC Trigger: ACATGGACCTGTACAGTATCAACTACCTACACTTTG...CAACTCTAGAGGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | CCAATGTCCTGCAAACTCAGTCAAAACTATGAGGTAATGGACTTAGGGAGCATCTGCCCAGAGACCACTTaGTGCAGGGGAGTTGCTATT | + |
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Preference number: 4 (lower is better) Translates to: PMSCKLSQNYEVMDLGSICPETT*CRGVAI Trigger: AATAGCAACTCCCCTGCAGCAAGTGGTCTCTGGGCA...GATGCTCCCTAAGTCCATTACCTCATAGTTTTGACTGAGTTTGCAGGACATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | TCAACAGTAGTGACCAATGCAACCTCAGCTGGAAGAGCAGGAGTTAGCAGTTATGAGGTGTGGCACACCTaGATGTTGCAAGGAACGTTA | + |
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Preference number: 4 (lower is better) Translates to: STVVTNATSAGRAGVSSYEVWHT*MLQGTL Trigger: TAACGTTCCTTGCAACATGCAGGTGTGCCACACCTC...ATAACTGCTAACTCCTGCTCTTCCAGCTGAGGTTGCATTGGTCACTACTGTTGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | ATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTAGAACTCTTCTAGTTGACATGTaGCCAGAAGAAGGCAGACTC | + |
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Preference number: 4 (lower is better) Translates to: IQRLAKFWKCMVCLGVRTLLVDM*PEEGRL Trigger: GAGTCTGCCTTCTTCTGGTCACATGTCAACTAGAAG...AGTTCTAACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | CCAATGTCCTGCAAACTCAGTCAAAACTATGAGGTAATGGACTTAGGGAGCATCTGTGTGGTCCACAACTaGCTGATCTTGGCCACGTTT | + |
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Preference number: 4 (lower is better) Translates to: PMSCKLSQNYEVMDLGSICVVHN*LILATF Trigger: AAACGTGGCCAAGATCAGGCAGTTGTGGACCACACA...GATGCTCCCTAAGTCCATTACCTCATAGTTTTGACTGAGTTTGCAGGACATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | CCAATGTCCTGCAAACTCAGTCAAAACTATGAGGTAATGGACTTAGGGAGCATCGGCACACCTGCATGTTaGAAGGAACGTTACTTACCG | + |
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Preference number: 4 (lower is better) Translates to: PMSCKLSQNYEVMDLGSIGTPAC*KERYLP Trigger: CGGTAAGTAACGTTCCTTGCAACATGCAGGTGTGCC...GATGCTCCCTAAGTCCATTACCTCATAGTTTTGACTGAGTTTGCAGGACATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | GACATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTTCAAAATCCAGGTGTaGCGGGGTCTGGTACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: DIYFARNGRGGGECECSAFKIQV*RGLVLF Trigger: AAAAAGTACCAGACCCCGCCACACCTGGATTTTGAA...AGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAATGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR TCA 90 bp | ATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCCTATTAAGATGTTGCTaGTATTGTCATAAGACTGCC | + |
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Preference number: 4 (lower is better) Translates to: IYFARNGRGGGECECSASLLRCC*YCHKTA Trigger: GGCAGTCTTATGACAATATCAGCAACATCTTAATAG...GGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR GCA 90 bp | GCAGTTATCCAGAGGCTTGCCAAGTTCTGGAAGTGCATGGTGTGTTTAGGAGTTGACGAAATATCATTATaGTGCAATTTGGATTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: AVIQRLAKFWKCMVCLGVDEISL*CNLDSE Trigger: CTCAGAATCCAAATTGCAGCATAATGATATTTCGTC...AACTCCTAAACACACCATGCACTTCCAGAACTTGGCAAGCCTCTGGATAACTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CCA 90 bp | CCAATGTCCTGCAAACTCAGTCAAAACTATGAGGTAATGGACTTAGGGAGCATCCATTATGCTGCAATTTaGATTCTGAGCACATGTGGA | + |
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Preference number: 4 (lower is better) Translates to: PMSCKLSQNYEVMDLGSIHYAAI*ILSTCG Trigger: TCCACATGTGCTCAGAATCCAAATTGCAGCATAATG...GATGCTCCCTAAGTCCATTACCTCATAGTTTTGACTGAGTTTGCAGGACATTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS GCA 90 bp | GACCTGGCGAAGCCGGAGACGCTTCAAGCCCCAAGTTTTTCTTGGTaGTTTGGTCACCCGCCGGGTGGTGAGCTCCTGACTGGTAGACAC | + |
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Preference number: 5 (lower is better) Translates to: DLAKPETLQAPSFSW*FGHPPGGELLTGRH Trigger: GTGTCTACCAGTCAGGAGCTCACCACCCGGCGGGTGACCAAAGCACCAAGAAAAACTTGGGGCTTGAAGCGTCTCCGGCTTCGCCAGGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS CCA 90 bp | GATGTTGCTGATATTGTCATAAGACTGCCTGGCCCTCCATTCTTTTaGTGGGATGACCTTGGCCAGTCCAGCTCGGTGTGCCCCTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: DVADIVIRLPGPPFF*WDDLGQSSSVCPLG Trigger: TCCCAAGGGGCACACCGAGCTGGACTGGCCAAGGTCATCCCACCAAAAGAATGGAGGGCCAGGCAGTCTTATGACAATATCAGCAACATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS CCA 90 bp | GGCAGACTCAGAGGATGTGGTGAGGCTCTGGCTGAGTCAGACTTCTaGACATCATCACCTTTCACATCTGATGGTTGCCTGGAGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: GRLRGCGEALAESDF*TSSPFTSDGCLEVW Trigger: CCACACCTCCAGGCAACCATCAGATGTGAAAGGTGATGATGTCCAGAAGTCTGACTCAGCCAGAGCCTCACCACATCCTCTGAGTCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS-3UTR CAA 90 bp | ACCTCAGCTGGAAGAGCAGGAGTTAGCAGTTATCCAGAGGCTTGCCAAGTTCTGTTTGGTGGGATGACCTaGGCCAGTCCAGCTCGGTGT | + |
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Preference number: 5 (lower is better) Translates to: TSAGRAGVSSYPEACQVLFGGMT*ASPARC Trigger: ACACCGAGCTGGACTGGCCAAGGTCATCCCACCAAA...CAGAACTTGGCAAGCCTCTGGATAACTGCTAACTCCTGCTCTTCCAGCTGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CAA 90 bp | GACATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTGCTCTGGACTGGGGCTaGTGTCATCTCTGCCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: DIYFARNGRGGGECECSAALDWG*CHLCLL Trigger: CAGCAGGCAGAGATGACACAAGCCCCAGTCCAGAGC...AGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAATGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CAA 90 bp | ATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCTCTGCCTGCTGGAAGTaGCCTCTTGACTGGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: IYFARNGRGGGECECSASSACWK*PLDWSS Trigger: GGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAGA...GGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS TCA 90 bp | AGTTCACAAGGACGACGACCAAGACTACATCTTCTAGTTGACATGTaGCCAGAAGAAGGCAGACTCAGAGGATGTGGTGAGGCTCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: SSQGRRPRLHLLVDM*PEEGRLRGCGEALA Trigger: AGCCAGAGCCTCACCACATCCTCTGAGTCTGCCTTCTTCTGGTCACATGTCAACTAGAAGATGTAGTCTTGGTCGTCGTCCTTGTGAACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS CCA 90 bp | ACATGTGACCAGAAGAAGGCAGACTCAGAGGATGTGGTGAGGCTCTaGCTGAGTCAGACTTCTGGACATCATCACCTTTCACATCTGATG | + |
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Preference number: 5 (lower is better) Translates to: TCDQKKADSEDVVRL*LSQTSGHHHLSHLM Trigger: CATCAGATGTGAAAGGTGATGATGTCCAGAAGTCTGACTCAGCCAGAGCCTCACCACATCCTCTGAGTCTGCCTTCTTCTGGTCACATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS-3UTR CAA 90 bp | ATTTATTTTGCAAGAAATGGCAGAGGGGGAGGAGAGTGTGAGTGTTCTGCTTCCAGCCCCAAGTTTTTCTaGGTGCTTTGGTCACCCGCC | + |
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Preference number: 5 (lower is better) Translates to: IYFARNGRGGGECECSASSPKFF*VLWSPA Trigger: GGCGGGTGACCAAAGCACCAAGAAAAACTTGGGGCT...GGAAGCAGAACACTCACACTCTCCTCCCCCTCTGCCATTTCTTGCAAAATAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS-3UTR CAA 90 bp | GCTGAGCAGCCTCAGCTGAATTTAGCTTGCAGAAACTCAACAGTAGTGACCAATGCTGGAAGTTGCCTCTaGACTGGAGCTCCATTGGAG | + |
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Preference number: 5 (lower is better) Translates to: AEQPQLNLACRNSTVVTNAGSCL*TGAPLE Trigger: CTCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAGC...ATTGGTCACTACTGTTGAGTTTCTGCAAGCTAAATTCAGCTGAGGCTGCTCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS CCA 72 bp | CCTGGCAGCCCTGGGAGCTGCCAGGGAAGAGTTCCCTaGCCAGGCGCTCCAGGCGCCTGCCATGCTCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: PGSPGSCQGRVP*PGAPGACHAQG Trigger: CCCCTGAGCATGGCAGGCGCCTGGAGCGCCTGGCCAGGGAACTCTTCCCTGGCAGCTCCCAGGGCTGCCAGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS TCA 72 bp | CATAAGACTGCCTGGCCCTCCATTCTTTTGGTGGGATaGCCTTGGCCAGTCCAGCTCGGTGTGCCCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: HKTAWPSILLVG*PWPVQLGVPLG Trigger: CCCAAGGGGCACACCGAGCTGGACTGGCCAAGGTCATCCCACCAAAAGAATGGAGGGCCAGGCAGTCTTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS TCA 72 bp | CTTGGTGCTTTGGTCACCCGCCGGGTGGTGAGCTCCTaGCTGGTAGACACCATAGTCTCTGTGTGGTCCACA | + |
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Preference number: 6 (lower is better) Translates to: LGALVTRRVVSS*LVDTIVSVWST Trigger: TGTGGACCACACAGAGACTATGGTGTCTACCAGTCAGGAGCTCACCACCCGGCGGGTGACCAAAGCACCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS GCA 72 bp | AAGCCGGAGACGCTTCAAGCCCCAAGTTTTTCTTGGTaGTTTGGTCACCCGCCGGGTGGTGAGCTCCTGACT | + |
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Preference number: 6 (lower is better) Translates to: KPETLQAPSFSW*FGHPPGGELLT Trigger: AGTCAGGAGCTCACCACCCGGCGGGTGACCAAAGCACCAAGAAAAACTTGGGGCTTGAAGCGTCTCCGGCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS CCA 72 bp | ATTGTCATAAGACTGCCTGGCCCTCCATTCTTTTGGTaGGATGACCTTGGCCAGTCCAGCTCGGTGTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: IVIRLPGPPFFW*DDLGQSSSVCP Trigger: GGGGCACACCGAGCTGGACTGGCCAAGGTCATCCCACCAAAAGAATGGAGGGCCAGGCAGTCTTATGACAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS CAA 72 bp | TGGACTGGGGCTTGTGTCATCTCTGCCTGCTGGAAGTaGCCTCTTGACTGGAGCTCCATTGGAGGACTCCTG | + |
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Preference number: 6 (lower is better) Translates to: WTGACVISACWK*PLDWSSIGGLL Trigger: CAGGAGTCCTCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAGAGATGACACAAGCCCCAGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS GCA 72 bp | CTGAAGCTCTGGACTGGGGCTTGTGTCATCTCTGCCTaGTGGAAGTTGCCTCTTGACTGGAGCTCCATTGGA | + |
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Preference number: 6 (lower is better) Translates to: LKLWTGACVISA*WKLPLDWSSIG Trigger: TCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAGAGATGACACAAGCCCCAGTCCAGAGCTTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS CCA 72 bp | AAGCTCTGGACTGGGGCTTGTGTCATCTCTGCCTGCTaGAAGTTGCCTCTTGACTGGAGCTCCATTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: KLWTGACVISAC*KLPLDWSSIGG Trigger: TCCTCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAGAGATGACACAAGCCCCAGTCCAGAGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS GCA 72 bp | TCGGAGGTCAATCCCCCTTCAGAAGCTGTCATAAGATaGTGTGGGCCAGGGTTCACAAGTCCTGAGTCGACT | + |
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Preference number: 6 (lower is better) Translates to: SEVNPPSEAVIR*CGPGFTSPEST Trigger: AGTCGACTCAGGACTTGTGAACCCTGGCCCACAGCATCTTATGACAGCTTCTGAAGGGGGATTGACCTCCGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS CCA 72 bp | GATATTGTCATAAGACTGCCTGGCCCTCCATTCTTTTaGTGGGATGACCTTGGCCAGTCCAGCTCGGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: DIVIRLPGPPFF*WDDLGQSSSVC Trigger: GCACACCGAGCTGGACTGGCCAAGGTCATCCCACCAAAAGAATGGAGGGCCAGGCAGTCTTATGACAATATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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| CDS TCA 72 bp | AGTTGCCTCTTGACTGGAGCTCCATTGGAGGACTCCTaGGCTCCTAGTTCACAAGGACGACGACCAAGACTA | + |
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Preference number: 6 (lower is better) Translates to: SCLLTGAPLEDS*APSSQGRRPRL Trigger: TAGTCTTGGTCGTCGTCCTTGTGAACTAGGAGCTCAGGAGTCCTCCAATGGAGCTCCAGTCAAGAGGCAACT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058796.7 |
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| CDS TCA 72 bp | GGACGACGACCAAGACTACATCTTCTAGTTGACATGTaGCCAGAAGAAGGCAGACTCAGAGGATGTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: GRRPRLHLLVDM*PEEGRLRGCGE Trigger: CTCACCACATCCTCTGAGTCTGCCTTCTTCTGGTCACATGTCAACTAGAAGATGTAGTCTTGGTCGTCGTCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058796.7 ENSMUST00000115647.3 |
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