RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KDM4C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028397

Ensembl transcript IDs: ENSMUST00000030102.12, ENSMUST00000077851.10, ENSMUST00000149295.2

Found 241 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCCCTaGGGAAGGGACCTGAGCCAGAGAGGGAACCCCGCTTCTTTAGCA +
Preference number: 1 (lower is better)
Translates to: AATEGGGKGASKCVP*GRDLSQRGNPASLA
Trigger: TGCTAAAGAAGCGGGGTTCCCTCTCTGGCTCAGGTCCCTTCCTCAGGGAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CCA 90 bp TTTCCCTGGCTGTGGAAAATATATATAAATACACCCACCGGCTGTTaGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCA +
Preference number: 1 (lower is better)
Translates to: FPWLWKIYINTPTGC*VMRLPLKEVGKEPP
Trigger: TGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTTCCACAGCCAGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR GCA 90 bp AGGGGTGATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTaGTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAATACCA +
Preference number: 1 (lower is better)
Translates to: RGDQITEATNMSLLG*LVIKLQKPGLLPIP
Trigger: TGGTATTGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATCACCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CAA 90 bp AAGCACCCAGCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTaGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACA +
Preference number: 2 (lower is better)
Translates to: KHPATCPNVYPKAVP*SSLFWSELHCGCCT
Trigger: TGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGCTGGGTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR GCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCTCTTCTGGTCTGAGCTaGACTGTGGCTGCTGCACAT +
Preference number: 2 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFSSGLS*TVAAAH
Trigger: ATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGA...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR TCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCCTGAGGAAGGGACCTaGGCCAGAGAGGGAACCCCG +
Preference number: 2 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKPEEGT*AREGTP
Trigger: CGGGGTTCCCTCTCTGGCTCAGGTCCCTTCCTCAGG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CAA 90 bp CTTTCCCTGGCTGTGGAAAATATATATAAATACACCCACCGGCTGTaGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCC +
Preference number: 2 (lower is better)
Translates to: LSLAVENIYKYTHRL*GDEAATEGGGKGAS
Trigger: GGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTTCCACAGCCAGGGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR TCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATTCCCTCTTCTGGTCTaGGCTGCACTGTGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: DQITEATNMSLLGCLVIKFPLLV*AALWLL
Trigger: CAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR GCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGTCTTCTGGTCTGAGCTaGACTGTGGCTGCTGCACAT +
Preference number: 2 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLSSGLS*TVAAAH
Trigger: ATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGA...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR TCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTTTGGGGTCAAACAAATaGCTGAGGGGTGATCAGATT +
Preference number: 2 (lower is better)
Translates to: CTREDSIQVNPITIHAICLGSNK*LRGDQI
Trigger: AATCTGATCACCCCTCAGTCATTTGTTTGACCCCAA...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR TCA 72 bp GAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCCCTaGGGAAGGGACCTGAGCCAGAGAGGGAACCCCGCT +
Preference number: 3 (lower is better)
Translates to: EGGGKGASKCVP*GRDLSQRGNPA
Trigger: AGCGGGGTTCCCTCTCTGGCTCAGGTCCCTTCCTCAGGGAACACATTTGGAGGCTCCTTTCCCACCTCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR CAA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCCCCAAGGCTGTCCCTTaGTCTTCCCTCTTCTGGTCT +
Preference number: 3 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFPKAVP*SSLFWS
Trigger: AGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CCA 72 bp GTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTaGTCTGAGCTGCACTGTGGCTGCTGCACATTATCA +
Preference number: 3 (lower is better)
Translates to: VYPKAVPLSSLF*SELHCGCCTLS
Trigger: TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CCA 72 bp CTGTGGAAAATATATATAAATACACCCACCGGCTGTTaGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAG +
Preference number: 3 (lower is better)
Translates to: LWKIYINTPTGC*VMRLPLKEVGK
Trigger: CTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTTCCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CCA 72 bp TCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTaGTTTATTACCAATACCAAAGAAGCACCCAGCCAC +
Preference number: 3 (lower is better)
Translates to: SSWLLGNQTPEA*FITNTKEAPSH
Trigger: GTGGCTGGGTGCTTCTTTGGTATTGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTCTCTTCTTGGTTGCTaGGTAATCAAACTCCAGAAG +
Preference number: 3 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSLLGC*VIKLQK
Trigger: CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR-3UTR CAA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTTATGTCTCTTCTTGGTaGCTTGGTAATCAAACTCCA +
Preference number: 3 (lower is better)
Translates to: CTREDSIQVNPITIHAICYVSSW*LGNQTP
Trigger: TGGAGTTTGATTACCAAGCAACCAAGAAGAGACATA...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR GCA 72 bp CAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTaGTTGGTAATCAAACTCCAGAAGCCTGGTTTATTA +
Preference number: 3 (lower is better)
Translates to: QITEATNMSLLG*LVIKLQKPGLL
Trigger: TAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGCCCATGGCAGGGTTTaGACCCTCTTCCCCACTAAA +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCAHGRV*TLFPTK
Trigger: TTTAGTGGGGAAGAGGGTGCAAACCCTGCCATGGGC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCAGCCTTGGGAGCTACTaGGGAAGAAGCCTTGGGCTA +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCSLGSY*GRSLGL
Trigger: TAGCCCAAGGCTTCTTCCCCAGTAGCTCCCAAGGCT...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
3UTR CAA 72 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTaGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGC +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVP*SSLFWSELHCG
Trigger: GCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGCCTGTGACCATCTGCTaGATTGGTGCTGGGATGAGC +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWPVTIC*IGAGMS
Trigger: GCTCATCCCAGCACCAATTCAGCAGATGGTCACAGG...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGTCCCGACTGCCCTGTaGCCATCTGCTGAATTGGTG +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFVPTAL*PSAELV
Trigger: CACCAATTCAGCAGATGGTCACAGGGCAGTCGGGAC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCAGTCATCAGGCTCCATaGGCACTCCAGCAGCATGGG +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFSHQAP*ALQQHG
Trigger: CCCATGCTGCTGGAGTGCTCATGGAGCCTGATGACT...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCCTGCTGTTAGCCAGCTaGCTGAACTCCTTCACAGTC +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCLLLAS*LNSFTV
Trigger: GACTGTGAAGGAGTTCAGGCAGCTGGCTAACAGCAG...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGCACTGAGGGGGAAATaGGGGTCATCTTGTGCCGGA +
Preference number: 4 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTALRGK*GSSCAG
Trigger: TCCGGCACAAGATGACCCTCATTTCCCCCTCAGTGC...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTCACTCGCTACCTGCTaGTTCACAAGTGTCATTGGG +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCSLATC*FTSVIG
Trigger: CCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGA...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGGAGCTTAGCACTCTTTaGCTCTTCCTCTCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWELSTL*LFLSPW
Trigger: CCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTC...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGATGGCCATGAGAAAGTaGTATGCAGTCAGCGCCCTC +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWMAMRK*YAVSAL
Trigger: GAGGGCGCTGACTGCATACCACTTTCTCATGGCCAT...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCCCTCCATGGAAGGTCTaGAGGTCATTATCTTACAGC +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCPPWKV*RSLSYS
Trigger: GCTGTAAGATAATGACCTTCAGACCTTCCATGGAGG...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAAGTCATCAGGCTCCATaGGCACTCCAGCAGCATGGG +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSSHQAP*ALQQHG
Trigger: CCCATGCTGCTGGAGTGCTCATGGAGCCTGATGACT...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGCTCGATGGGCTCCTTTaGATTCCATGTATGCGAGGT +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWLDGLL*IPCMRG
Trigger: ACCTCGCATACATGGAATCCAAAGGAGCCCATCGAG...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCACACCTTGGCAAGACCTaGTCGATGGGCTCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSHLGKT*SMGSFG
Trigger: TCCAAAGGAGCCCATCGAGCAGGTCTTGCCAAGGTG...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTCTGCTGTTAGCCAGCTaGCTGAACTCCTTCACAGTC +
Preference number: 4 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTLLLAS*LNSFTV
Trigger: GACTGTGAAGGAGTTCAGGCAGCTGGCTAACAGCAG...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTTTGTCTGCCAAAGGTaGATGAGAGGCTTTGCCCAA +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWFVCQR*MRGFAQ
Trigger: TTGGGCAAAGCCTCTCATCCACCTTTGGCAGACAAA...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCTCAGGCCATTTGACTTaGATGACTTCTCCCTCCGCA +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFSGHLT*MTSPSA
Trigger: TGCGGAGGGAGAAGTCATCCAAGTCAAATGGCCTGA...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCATGCGAGGTATTTGTTaGACTCCCGAAACTCCTCCA +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFMRGIC*TPETPP
Trigger: TGGAGGAGTTTCGGGAGTTCAACAAATACCTCGCAT...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGCTCCCATTTATATCTaGTCCATAAATAGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCAPIYI*SINRCH
Trigger: GTGGCACCTATTTATGGAGCAGATATAAATGGGAGC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGTGGATGAGAGGCTTTaGCCAAGACTCTGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFVDERL*PRLCFF
Trigger: GAAGAAACAGAGTCTTGGGCAAAGCCTCTCATCCAC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCATCCATGCATTTCTCTTaGACCGGGCACACAGCCATC +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSSMHFS*TGHTAI
Trigger: GATGGCTGTGTGCCCGGTGCAAGAGAAATGCATGGA...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGGCAGAGACAGCATTCTaGAGTCCATGCATTTCTCTT +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWAETAF*SPCISL
Trigger: AAGAGAAATGCATGGACTGCAGAATGCTGTCTCTGC...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGTCTTCTCTCTTCATTaGAATCTGCGATCCATCTTC +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCVFSLH*NLRSIF
Trigger: GAAGATGGATCGCAGATTGCAATGAAGAGAGAAGAC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGTCATGGCTTTCTTCTaGATGTTGTATTGCGTGAAC +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCVMAFF*MLYCVN
Trigger: GTTCACGCAATACAACATCCAGAAGAAAGCCATGAC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGGCTTACCAAGTGGATaGCGCCAACTCTTAGTAGTT +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFGLPSG*RQLLVV
Trigger: AACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCACGGAGGCTTACCAAGTaGATGGCGCCAACTCTTAGT +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSRRLTK*MAPTLS
Trigger: ACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCG...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGTCTTTCTTCCAGATTaGACCACTTCATTTACTGCT +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCVFLPD*TTSFTA
Trigger: AGCAGTAAATGAAGTGGTTCAATCTGGAAGAAAGAC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGCATCTGCTGAATTGGTaGTGGGATGAGCAAATTATC +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWHLLNW*WDEQII
Trigger: GATAATTTGCTCATCCCAGCACCAATTCAGCAGATG...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCATCACTCGCTACCTGCTaGTTCACAAGTGTCATTGGG +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSSLATC*FTSVIG
Trigger: CCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGA...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCACACCTCCCCTCAAATTaGAGAGACAGCATTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSHLPSN*RDSILQ
Trigger: CTGCAGAATGCTGTCTCTGCAATTTGAGGGGAGGTG...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGGCTTACCAAGTGGATaGCGCCAACTCTTAGTAGTT +
Preference number: 4 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTGLPSG*RQLLVV
Trigger: AACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCC...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGACCCACAGAAATaGCTTTCTCACAAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWSDPQK*LSHKFW
Trigger: CCAAAACTTGTGAGAAAGCCATTTCTGTGGGTCAGA...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGTCTTCTCTCTTCATTaGAATCTGCGATCCATCTTC +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFVFSLH*NLRSIF
Trigger: GAAGATGGATCGCAGATTGCAATGAAGAGAGAAGAC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGGAGTGGGCTTTGTATaGTCAATAGTATATATATCC +
Preference number: 4 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCGVGFV*SIVYIS
Trigger: GGATATATATACTATTGACCATACAAAGCCCACTCC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCATTTGTCTGCCAAAGGTaGATGAGAGGCTTTGCCCAA +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSFVCQR*MRGFAQ
Trigger: TTGGGCAAAGCCTCTCATCCACCTTTGGCAGACAAA...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGCAGATGGCACAGTTTaGCTCCATTTTTGCAACAGT +
Preference number: 4 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTADGTV*LHFCNS
Trigger: ACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGC...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCTATTTGTGTCCGTTCTaGGACATTAGTGAATCGCAC +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFYLCPF*DISESH
Trigger: GTGCGATTCACTAATGTCCCAGAACGGACACAAATA...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGGAGCCTTTACTCTCTTaGGTAACTCTTCATCTAAAG +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWEPLLS*VTLHLK
Trigger: CTTTAGATGAAGAGTTACCCAAGAGAGTAAAGGCTC...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGTCTTTCTTCCAGATTaGACCACTTCATTTACTGCT +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFVFLPD*TTSFTA
Trigger: AGCAGTAAATGAAGTGGTTCAATCTGGAAGAAAGAC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAGAAATGTGTCTCTGCTaGAGGAGCCATCATCAAACA +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSEMCLC*RSHHQT
Trigger: TGTTTGATGATGGCTCCTTCAGCAGAGACACATTTC...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCCATTTTCTTCTTTGCTaGTATCAGGCTTGTAGTACG +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFHFLLC*YQACST
Trigger: CGTACTACAAGCCTGATAGCAGCAAAGAAGAAAATG...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAGACCATCTGCTGAATTaGTGCTGGGATGAGCAAATT +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSDHLLN*CWDEQI
Trigger: AATTTGCTCATCCCAGCACCAATTCAGCAGATGGTC...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGAGCCTTGGGAGCTACTaGGGAAGAAGCCTTGGGCTA +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSLGSY*GRSLGL
Trigger: TAGCCCAAGGCTTCTTCCCCAGTAGCTCCCAAGGCT...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAGGCTCTGTTGTCTTCTaGTGGAATTTCAGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSGSVVF*WNFSCY
Trigger: GTAACAGCTGAAATTCCACCAGAAGACAACAGAGCC...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGAATTGGTGCTGGGATaGGCAAATTATCAATATCAT +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFELVLG*ANYQYH
Trigger: ATGATATTGATAATTTGCTCATCCCAGCACCAATTC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTCTGCCAAAGGTGGATaGGAGGCTTTGCCCAAGACT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSAKGG*EALPKT
Trigger: AGTCTTGGGCAAAGCCTCTCATCCACCTTTGGCAGA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCTTTGGATTCCATGTATaGGAGGTATTTGTTGAACTC +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFFGFHV*EVFVEL
Trigger: GAGTTCAACAAATACCTCGCATACATGGAATCCAAA...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAGCTCCCATTTATATCTaGTCCATAAATAGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSAPIYI*SINRCH
Trigger: GTGGCACCTATTTATGGAGCAGATATAAATGGGAGC...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCTTGTGCCGGAGAAATaGATCACAGCCTTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKLVPEK*ITALGA
Trigger: AGCTCCCAAGGCTGTGATGCATTTCTCCGGCACAAG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTCCCTTGGATTACATCTaGTCCATAAAATGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTPLDYI*SIKCVF
Trigger: GAAGACACATTTTATGGAGCAGATGTAATCCAAGGG...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGGAGCTTAGCACTCTTTaGCTCTTCCTCTCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKELSTL*LFLSPW
Trigger: CCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTC...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGATAATCCAAGTATCTTaGAGTACAGTATTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWIIQVS*STVFAA
Trigger: AGCAGCAAATACTGTACTCCAAGATACTTGGATTAT...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGGAGTGGGCTTTGTATaGTCAATAGTATATATATCC +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFGVGFV*SIVYIS
Trigger: GGATATATATACTATTGACCATACAAAGCCCACTCC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGATGGCCATGAGAAAGTaGTATGCAGTCAGCGCCCTC +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKMAMRK*YAVSAL
Trigger: GAGGGCGCTGACTGCATACCACTTTCTCATGGCCAT...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCCCGCACGAAGCACTTaGCACAGGAAATCAGAAGAC +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKPARST*HRKSED
Trigger: GTCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTTTTGGATTCCATGTATaGGAGGTATTTGTTGAACTC +
Preference number: 4 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTFGFHV*EVFVEL
Trigger: GAGTTCAACAAATACCTCGCATACATGGAATCCAAA...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCATAATCCAAGTATCTTaGAGTACAGTATTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFIIQVS*STVFAA
Trigger: AGCAGCAAATACTGTACTCCAAGATACTTGGATTAT...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGAGCACTCCAGCAGCATaGGCACACGTAACATGGAAT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSTPAA*AHVTWN
Trigger: ATTCCATGTTACGTGTGCCCATGCTGCTGGAGTGCT...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGATGCGAGGTATTTGTTaGACTCCCGAAACTCCTCCA +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKMRGIC*TPETPP
Trigger: TGGAGGAGTTTCGGGAGTTCAACAAATACCTCGCAT...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTGCACTGAGGGGGAAATaGGGGTCATCTTGTGCCGGA +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICALRGK*GSSCAG
Trigger: TCCGGCACAAGATGACCCTCATTTCCCCCTCAGTGC...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTTCTGGATGTTGTATTaGGTGAACAGTCCCGACTGC +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKFWMLY*VNSPDC
Trigger: GCAGTCGGGACTGTTCACGCAATACAACATCCAGAA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTCAAGTCGCTTTCCATaGTCCGGAGGTATAGCATAC +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSSRFP*SGGIAY
Trigger: GTATGCTATACCTCCGGAGCATGGAAAGCGACTTGA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGGCCCATGGCAGGGTTTaGACCCTCTTCCCCACTAAA +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKAHGRV*TLFPTK
Trigger: TTTAGTGGGGAAGAGGGTGCAAACCCTGCCATGGGC...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGGTCCCGACTGCCCTGTaGCCATCTGCTGAATTGGTG +
Preference number: 4 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLVPTAL*PSAELV
Trigger: CACCAATTCAGCAGATGGTCACAGGGCAGTCGGGAC...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCTTGTGCCGGAGAAATaGATCACAGCCTTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKLVPEK*ITALGA
Trigger: AGCTCCCAAGGCTGTGATGCATTTCTCCGGCACAAG...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTCCATGCATTTCTCTTaGACCGGGCACACAGCCATC +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKSMHFS*TGHTAI
Trigger: GATGGCTGTGTGCCCGGTGCAAGAGAAATGCATGGA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCACACCTCCCCTCAAATTaGAGAGACAGCATTCTGCAG +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPHLPSN*RDSILQ
Trigger: CTGCAGAATGCTGTCTCTGCAATTTGAGGGGAGGTG...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCACTCGATGGGCTCCTTTaGATTCCATGTATGCGAGGT +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPLDGLL*IPCMRG
Trigger: ACCTCGCATACATGGAATCCAAAGGAGCCCATCGAG...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGAACTCTCCAGCCTCCTaGGTGATCTTGTCGAAGGGA +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKNSPAS*VILSKG
Trigger: TCCCTTCGACAAGATCACCCAGGAGGCTGGAGAGTT...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTTCTGGAGTAGATTCTaGAGTGGGCTTTGTATGGTC +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKFWSRF*SGLCMV
Trigger: GACCATACAAAGCCCACTCCAGAATCTACTCCAGAA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGGTGAAATTACAGCACTaGCTCTGTTGTCTTCTGGTG +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKVKLQH*LCCLLV
Trigger: CACCAGAAGACAACAGAGCCAGTGCTGTAATTTCAC...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGGCAGATGGCACAGTTTaGCTCCATTTTTGCAACAGT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKADGTV*LHFCNS
Trigger: ACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGC...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAAGCACTCCAGCAGCATaGGCACACGTAACATGGAAT +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPSTPAA*AHVTWN
Trigger: ATTCCATGTTACGTGTGCCCATGCTGCTGGAGTGCT...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCATCCATGTCCTCCGTGTaGCACGCAAATGTTGTTTTC +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPSMSSV*HANVVF
Trigger: GAAAACAACATTTGCGTGGCACACGGAGGACATGGA...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAGTGGATGAGAGGCTTTaGCCAAGACTCTGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPVDERL*PRLCFF
Trigger: GAAGAAACAGAGTCTTGGGCAAAGCCTCTCATCCAC...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTAACTCTCCAGCCTCCTaGGTGATCTTGTCGAAGGGA +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICNSPAS*VILSKG
Trigger: TCCCTTCGACAAGATCACCCAGGAGGCTGGAGAGTT...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTCCCGCACGAAGCACTTaGCACAGGAAATCAGAAGAC +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICPARST*HRKSED
Trigger: GTCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGG...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATCTGCCAAAGGTGGATaGGAGGCTTTGCCCAAGACT +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKSAKGG*EALPKT
Trigger: AGTCTTGGGCAAAGCCTCTCATCCACCTTTGGCAGA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCATTTGTGATGACTGTCTaGCCCACAGAAATGGCTTTC +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPFVMTV*PTEMAF
Trigger: GAAAGCCATTTCTGTGGGTCAGACAGTCATCACAAA...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAGAAATGTGTCTCTGCTaGAGGAGCCATCATCAAACA +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPEMCLC*RSHHQT
Trigger: TGTTTGATGATGGCTCCTTCAGCAGAGACACATTTC...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCACCCTCATCATAAATaGTCCCATTTATATCTGCTC +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKHPHHK*SHLYLL
Trigger: GAGCAGATATAAATGGGAGCATTTATGATGAGGGTG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTCCATGTCCTCCGTGTaGCACGCAAATGTTGTTTTC +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKSMSSV*HANVVF
Trigger: GAAAACAACATTTGCGTGGCACACGGAGGACATGGA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCAACTTCTTCGTCAATaGTTAGAACCTCAGGCAATT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKQLLRQ*LEPQAI
Trigger: AATTGCCTGAGGTTCTAAGCATTGACGAAGAAGTTG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTTAGGAGACTTTGTCTaGCAAAGGTGGATGAGAGGC +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKLGDFV*QRWMRG
Trigger: GCCTCTCATCCACCTTTGGCAGACAAAGTCTCCTAA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCTGCTGAATTGGTGCTaGGATGAGCAAATTATCAAT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKLLNWC*DEQIIN
Trigger: ATTGATAATTTGCTCATCCCAGCACCAATTCAGCAG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTCAAGGTTACTTCCATaGCCCTCTTCATCATTTTCT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSRLLP*PSSSFS
Trigger: AGAAAATGATGAAGAGGGCCATGGAAGTAACCTTGA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGCGGAGGCTTACCAAGTaGATGGCGCCAACTCTTAGT +
Preference number: 4 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLRRLTK*MAPTLS
Trigger: ACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCG...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTCTTGTCGAAGGGAATaGCATACTTCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKSCRRE*HTSSAL
Trigger: CAGTGCTGAAGAAGTATGGCATTCCCTTCGACAAGA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTATCATAGCACTGTCTTaGCTTCCACTCCTTAGGAGG +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICIIALS*LPLLRR
Trigger: CCTCCTAAGGAGTGGAAGCCAAGACAGTGCTATGAT...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGGACCATCTGCTGAATTaGTGCTGGGATGAGCAAATT +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKDHLLN*CWDEQI
Trigger: AATTTGCTCATCCCAGCACCAATTCAGCAGATGGTC...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAGTCATGGCTTTCTTCTaGATGTTGTATTGCGTGAAC +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPVMAFF*MLYCVN
Trigger: GTTCACGCAATACAACATCCAGAAGAAAGCCATGAC...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGGGCTCTGTTGTCTTCTaGTGGAATTTCAGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKGSVVF*WNFSCY
Trigger: GTAACAGCTGAAATTCCACCAGAAGACAACAGAGCC...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTTTCACTAAGAGCTTCTaGGATTTCCCCAGGCTCAAG +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICFTKSF*DFPRLK
Trigger: CTTGAGCCTGGGGAAATCCCAGAAGCTCTTAGTGAA...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCATCTGACCCACAGAAATaGCTTTCTCACAAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPSDPQK*LSHKFW
Trigger: CCAAAACTTGTGAGAAAGCCATTTCTGTGGGTCAGA...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATCAGGCCATTTGACTTaGATGACTTCTCCCTCCGCA +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKSGHLT*MTSPSA
Trigger: TGCGGAGGGAGAAGTCATCCAAGTCAAATGGCCTGA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACCTCCATGGAAGGTCTaGAGGTCATTATCTTACAGC +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKPPWKV*RSLSYS
Trigger: GCTGTAAGATAATGACCTTCAGACCTTCCATGGAGG...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGTTCTGGATGTTGTATTaGGTGAACAGTCCCGACTGC +
Preference number: 4 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLFWMLY*VNSPDC
Trigger: GCAGTCGGGACTGTTCACGCAATACAACATCCAGAA...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATCAAGTCGCTTTCCATaGTCCGGAGGTATAGCATAC +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKSSRFP*SGGIAY
Trigger: GTATGCTATACCTCCGGAGCATGGAAAGCGACTTGA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATTAGGAGACTTTGTCTaGCAAAGGTGGATGAGAGGC +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKLGDFV*QRWMRG
Trigger: GCCTCTCATCCACCTTTGGCAGACAAAGTCTCCTAA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGGGTGTCTACAGAAGATaGATTTCAATTTTAACCTCT +
Preference number: 4 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKGVYRR*ISILTS
Trigger: AGAGGTTAAAATTGAAATGCATCTTCTGTAGACACC...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCACCCTTGGATTACATCTaGTCCATAAAATGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPPLDYI*SIKCVF
Trigger: GAAGACACATTTTATGGAGCAGATGTAATCCAAGGG...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTCATTATCTTACAGCTaGGATTTAGGGGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKSLSYS*DLGDSP
Trigger: TGGAGAGTCCCCTAAATCCCAGCTGTAAGATAATGA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTGTGAAATTACAGCACTaGCTCTGTTGTCTTCTGGTG +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICVKLQH*LCCLLV
Trigger: CACCAGAAGACAACAGAGCCAGTGCTGTAATTTCAC...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTATTTGTGTCCGTTCTaGGACATTAGTGAATCGCAC +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKYLCPF*DISESH
Trigger: GTGCGATTCACTAATGTCCCAGAACGGACACAAATA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTAGCCATCATCAAACATaGCCTCATAGAAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICSHHQT*PHRRFE
Trigger: CTCAAACCTTCTATGAGGTCATGTTTGATGATGGCT...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTCATCTGCTGAATTGGTaGTGGGATGAGCAAATTATC +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICHLLNW*WDEQII
Trigger: GATAATTTGCTCATCCCAGCACCAATTCAGCAGATG...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATCTTGTCGAAGGGAATaGCATACTTCTTCAGCACTG +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKSCRRE*HTSSAL
Trigger: CAGTGCTGAAGAAGTATGGCATTCCCTTCGACAAGA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGTTACTGATGAACTTATaGAACCTTTTCCCGAGAGCT +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKLLMNL*NLFPRA
Trigger: AGCTCTCGGGAAAAGGTTGCATAAGTTCATCAGTAA...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCAACTTCTTCGTCAATaGTTAGAACCTCAGGCAATT +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKQLLRQ*LEPQAI
Trigger: AATTGCCTGAGGTTCTAAGCATTGACGAAGAAGTTG...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGGCAGAGACAGCATTCTaGAGTCCATGCATTTCTCTT +
Preference number: 4 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLAETAF*SPCISL
Trigger: AAGAGAAATGCATGGACTGCAGAATGCTGTCTCTGC...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCACTCTTCATTGCAATCTaGGATCCATCTTCAAATTCA +
Preference number: 4 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPLFIAI*DPSSNS
Trigger: TGAATTTGAAGATGGATCGCAGATTGCAATGAAGAG...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCTGCTGAATTGGTGCTaGGATGAGCAAATTATCAAT +
Preference number: 4 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKLLNWC*DEQIIN
Trigger: ATTGATAATTTGCTCATCCCAGCACCAATTCAGCAG...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATTCTGGAGTAGATTCTaGAGTGGGCTTTGTATGGTC +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKFWSRF*SGLCMV
Trigger: GACCATACAAAGCCCACTCCAGAATCTACTCCAGAA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR TCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAAAGCCATCATCAAACATaGCCTCATAGAAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKSHHQT*PHRRFE
Trigger: CTCAAACCTTCTATGAGGTCATGTTTGATGATGGCT...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTCATTTTCTTCTTTGCTaGTATCAGGCTTGTAGTACG +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICHFLLC*YQACST
Trigger: CGTACTACAAGCCTGATAGCAGCAAAGAAGAAAATG...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAATCATTATCTTACAGCTaGGATTTAGGGGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKSLSYS*DLGDSP
Trigger: TGGAGAGTCCCCTAAATCCCAGCTGTAAGATAATGA...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTGAGCCTTTACTCTCTTaGGTAACTCTTCATCTAAAG +
Preference number: 4 (lower is better)
Translates to: CTREDSIQVNPITIHAICEPLLS*VTLHLK
Trigger: CTTTAGATGAAGAGTTACCCAAGAGAGTAAAGGCTC...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACACCCTCATCATAAATaGTCCCATTTATATCTGCTC +
Preference number: 4 (lower is better)
Translates to: DQITEATNMSLLGCLVIKHPHHK*SHLYLL
Trigger: GAGCAGATATAAATGGGAGCATTTATGATGAGGGTG...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGTCAAGGTTACTTCCATaGCCCTCTTCATCATTTTCT +
Preference number: 4 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLSRLLP*PSSSFS
Trigger: AGAAAATGATGAAGAGGGCCATGGAAGTAACCTTGA...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR GCA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGCTCTTCATTGCAATCTaGGATCCATCTTCAAATTCA +
Preference number: 4 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLLFIAI*DPSSNS
Trigger: TGAATTTGAAGATGGATCGCAGATTGCAATGAAGAG...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCGCTCGATGGGCTCCTTaGGATTCCATGTATGCGAGG +
Preference number: 5 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCARWAP*DSMYAR
Trigger: CCTCGCATACATGGAATCCAAAGGAGCCCATCGAGC...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGGGCTTTTCAGTGACTTaGAGGTGCCTAGGGCCCATG +
Preference number: 5 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWGFSVT*RCLGPM
Trigger: CATGGGCCCTAGGCACCTCAAAGTCACTGAAAAGCC...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCCTTCTGGATGTTGTATaGCGTGAACAGTCCCGACTG +
Preference number: 5 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCLLDVV*REQSRL
Trigger: CAGTCGGGACTGTTCACGCAATACAACATCCAGAAG...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGCTCGATGGGCTCCTTaGGATTCCATGTATGCGAGG +
Preference number: 5 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTARWAP*DSMYAR
Trigger: CCTCGCATACATGGAATCCAAAGGAGCCCATCGAGC...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCATCAGGCCATTTGACTaGGATGACTTCTCCCTCCGC +
Preference number: 5 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFIRPFD*DDFSLR
Trigger: GCGGAGGGAGAAGTCATCCAAGTCAAATGGCCTGAT...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTCCACATACTCATTCTaGAGCCTGGAGCTTAGCACT +
Preference number: 5 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCSTYSF*SLELST
Trigger: AGTGCTAAGCTCCAGGCTCAAGAATGAGTATGTGGA...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp AGGCAATTCTTCATCACTCGCTACCTGCTGCTTCACAAGTGTCATTaGGGATCTGGCCGGAGGCTTACCAAGTGGATGGCGCCAACTCTT +
Preference number: 5 (lower is better)
Translates to: RQFFITRYLLLHKCH*GSGRRLTKWMAPTL
Trigger: AAGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGATGAAGAATTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCATGTATGCGAGGTATTaGTTGAACTCCCGAAACTCC +
Preference number: 5 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCMYARY*LNSRNS
Trigger: GGAGTTTCGGGAGTTCAACAAATACCTCGCATACAT...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAGTCCATGCATTTCTCTaGCACCGGGCACACAGCCAT +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSVHAFL*HRAHSH
Trigger: ATGGCTGTGTGCCCGGTGCAAGAGAAATGCATGGAC...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTTACCATCAGGCCATTaGACTTGGATGACTTCTCCC +
Preference number: 5 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWLPSGH*TWMTSP
Trigger: GGGAGAAGTCATCCAAGTCAAATGGCCTGATGGTAA...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTACAGCACTGGCTCTGTaGTCTTCTGGTGGAATTTCA +
Preference number: 5 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTTALAL*SSGGIS
Trigger: TGAAATTCCACCAGAAGACAACAGAGCCAGTGCTGT...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCAGTTTGGCTCCATTTTaGCAACAGTTGCATTGTACT +
Preference number: 5 (lower is better)
Translates to: PKAVPLSSLFWSELHCGCSLAPF*QQLHCT
Trigger: AGTACAATGCAACTGTTGCAAAAATGGAGCCAAACT...GCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCACCTCTTCCTCTCCCCTaGGATTACATCTGCTCCATA +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSPLPLP*DYICSI
Trigger: TATGGAGCAGATGTAATCCAAGGGGAGAGGAAGAGG...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 90 bp TGGCTTTTCAGTGACTTTGAGGTGCCTAGGGCCCATGGCAGGGTTTaGACCCTCTTCCCCACTAAATTCAGCAAATTCCTCATCTTCTTC +
Preference number: 5 (lower is better)
Translates to: WLFSDFEVPRAHGRV*TLFPTKFSKFLIFF
Trigger: GAAGAAGATGAGGAATTTGCTGAATTTAGTGGGGAAGAGGGTGCAAACCCTGCCATGGGCCCTAGGCACCTCAAAGTCACTGAAAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCTCTGTCTACATCTATTaGTGTCCGTTCTGGGACATT +
Preference number: 5 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFSVYIY*CPFWDI
Trigger: AATGTCCCAGAACGGACACAAATAGATGTAGACAGA...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGGGTGATGAGGCTGCCACTGAAGGAGGTGGGAAAGGAGCCTCCAAATGTGTTCGACCTCATAGAAGGTTaGAGATGTCACATCTATCAC +
Preference number: 5 (lower is better)
Translates to: WVMRLPLKEVGKEPPNVFDLIEG*RCHIYH
Trigger: GTGATAGATGTGACATCTCAAACCTTCTATGAGGTC...GAACACATTTGGAGGCTCCTTTCCCACCTCCTTCAGTGGCAGCCTCATCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCATCCACATACTCATTCTaGAGCCTGGAGCTTAGCACT +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSSTYSF*SLELST
Trigger: AGTGCTAAGCTCCAGGCTCAAGAATGAGTATGTGGA...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS TCA 90 bp TCTTCAGGAAAGTACGATACACAGGGTCATCCACATACTCATTCTTaGGCCTGGAGCTTAGCACTCTTTGCCTCTTCCTCTCCCCTTGGA +
Preference number: 5 (lower is better)
Translates to: SSGKYDTQGHPHTHS*AWSLALFASSSPLG
Trigger: TCCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTCCAGGCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTTTCCTGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp CTGCTTCACAAGTGTCATTGGGGATCTGGCCGGAGGCTTACCAAGTaGATGGCGCCAACTCTTAGTAGTTTTTGGCTGTCCTTCAATTAT +
Preference number: 5 (lower is better)
Translates to: LLHKCHWGSGRRLTK*MAPTLSSFWLSFNY
Trigger: ATAATTGAAGGACAGCCAAAAACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAATGTATGCGAGGTATTaGTTGAACTCCCGAAACTCC +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSMYARY*LNSRNS
Trigger: GGAGTTTCGGGAGTTCAACAAATACCTCGCATACAT...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTTTGCCCTGTAAGCTCTaGGGAGGCTTTCTTAATTTT +
Preference number: 5 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTLPCKL*GGFLNF
Trigger: AAAATTAAGAAAGCCTCCCAAGAGCTTACAGGGCAA...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp GCCACCTGTCCCAATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGATTATCTTAGGAATGTaGAGCCCATTTCTCTCTTCA +
Preference number: 5 (lower is better)
Translates to: ATCPNVYPKAVPLSSLFWIILGM*SPFLSS
Trigger: TGAAGAGAGAAATGGGCTCAACATTCCTAAGATAAT...CCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACATTGGGACAGGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 90 bp TTGCGTGAACAGTCCCGACTGCCCTGTGACCATCTGCTGAATTGGTaGTGGGATGAGCAAATTATCAATATCATCATAGCACTGTCTTGG +
Preference number: 5 (lower is better)
Translates to: LREQSRLPCDHLLNW*WDEQIINIIIALSW
Trigger: CCAAGACAGTGCTATGATGATATTGATAATTTGCTCATCCCAGCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGACTGTTCACGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp CGTGAACAGTCCCGACTGCCCTGTGACCATCTGCTGAATTGGTGCTaGGATGAGCAAATTATCAATATCATCATAGCACTGTCTTGGCTT +
Preference number: 5 (lower is better)
Translates to: REQSRLPCDHLLNWC*DEQIINIIIALSWL
Trigger: AAGCCAAGACAGTGCTATGATGATATTGATAATTTGCTCATCCCAGCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGACTGTTCACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp ATCAGGCTTGTAGTACGGCATGAGCAGAGTGCAGATGGCACAGTTTaGCTCCATTTTTGCAACAGTTGCATTGTACTCCTGTTCAGCCAT +
Preference number: 5 (lower is better)
Translates to: IRLVVRHEQSADGTV*LHFCNSCIVLLFSH
Trigger: ATGGCTGAACAGGAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGCACTCTGCTCATGCCGTACTACAAGCCTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp GAGAAGGGACACCATAACAACTTGCATGAACCCGCACGAAGCACTTaGCACAGGAAATCAGAAGACTTGTTCCATCTTCTTCAAGGAAGG +
Preference number: 5 (lower is better)
Translates to: EKGHHNNLHEPARST*HRKSEDLFHLLQGR
Trigger: CCTTCCTTGAAGAAGATGGAACAAGTCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGGTTCATGCAAGTTGTTATGGTGTCCCTTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGATCAGGCCATTTGACTaGGATGACTTCTCCCTCCGC +
Preference number: 5 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKIRPFD*DDFSLR
Trigger: GCGGAGGGAGAAGTCATCCAAGTCAAATGGCCTGAT...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTGTACCCCAAGGCTGTCCCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTTTGATCCAAGATACTTaGCCCCATAGAGTTTACCAT +
Preference number: 5 (lower is better)
Translates to: MCTPRLSLCLPSSGLSCTLIQDT*PHRVYH
Trigger: ATGGTAAACTCTATGGGGCAAAGTATCTTGGATCAA...AGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGGGACAGCCTTGGGGTACACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp GTATTGCGTGAACAGTCCCGACTGCCCTGTGACCATCTGCTGAATTaGTGCTGGGATGAGCAAATTATCAATATCATCATAGCACTGTCT +
Preference number: 5 (lower is better)
Translates to: VLREQSRLPCDHLLN*CWDEQIINIIIALS
Trigger: AGACAGTGCTATGATGATATTGATAATTTGCTCATCCCAGCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGACTGTTCACGCAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp TTCACAAGTGTCATTGGGGATCTGGCCGGAGGCTTACCAAGTGGATaGCGCCAACTCTTAGTAGTTTTTGGCTGTCCTTCAATTATCTTA +
Preference number: 5 (lower is better)
Translates to: FTSVIGDLAGGLPSG*RQLLVVFGCPSIIL
Trigger: TAAGATAATTGAAGGACAGCCAAAAACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGCTTGGAGTACAGTATTaGCTGCTGTTAGCCAGCTGC +
Preference number: 5 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKLGVQY*LLLASC
Trigger: GCAGCTGGCTAACAGCAGCAAATACTGTACTCCAAG...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAAGTTTGGCTCCATTTTaGCAACAGTTGCATTGTACT +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSSLAPF*QQLHCT
Trigger: AGTACAATGCAACTGTTGCAAAAATGGAGCCAAACT...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAAGGAAATCAGAAGACTaGTTCCATCTTCTTCAAGGA +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSRKSED*FHLLQG
Trigger: TCCTTGAAGAAGATGGAACAAGTCTTCTGATTTCCT...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp CCTTTGTCTTCCCTCTTCTGGTCTGAGCTGCACTGTGGCTGCTGCACATTATCAACATATAGGCAACATTaGATCCAAGATACTTTGCCC +
Preference number: 5 (lower is better)
Translates to: PLSSLFWSELHCGCCTLSTYRQH*IQDTLP
Trigger: GGGCAAAGTATCTTGGATCAAATGTTGCCTATATGT...TGATAATGTGCAGCAGCCACAGTGCAGCTCAGACCAGAAGAGGGAAGACAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 90 bp GTTGCATTGTACTCCTGTTCAGCCATAAAGTTAGGAGACTTTGTCTaGCAAAGGTGGATGAGAGGCTTTGCCCAAGACTCTGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: VALYSCSAIKLGDFV*QRWMRGFAQDSVSS
Trigger: TGAAGAAACAGAGTCTTGGGCAAAGCCTCTCATCCACCTTTGGCAGACAAAGTCTCCTAACTTTATGGCTGAACAGGAGTACAATGCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 90 bp GAGCAGAGTGCAGATGGCACAGTTTGGCTCCATTTTTGCAACAGTTaGATTGTACTCCTGTTCAGCCATAAAGTTAGGAGACTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: EQSADGTVWLHFCNS*IVLLFSHKVRRLCL
Trigger: CAGACAAAGTCTCCTAACTTTATGGCTGAACAGGAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGCACTCTGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp TACTCCTGTTCAGCCATAAAGTTAGGAGACTTTGTCTGCCAAAGGTaGATGAGAGGCTTTGCCCAAGACTCTGTTTCTTCAACTTCTTCG +
Preference number: 5 (lower is better)
Translates to: YSCSAIKLGDFVCQR*MRGFAQDSVSSTSS
Trigger: CGAAGAAGTTGAAGAAACAGAGTCTTGGGCAAAGCCTCTCATCCACCTTTGGCAGACAAAGTCTCCTAACTTTATGGCTGAACAGGAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGGGCTTTTCAGTGACTTaGAGGTGCCTAGGGCCCATG +
Preference number: 5 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKGFSVT*RCLGPM
Trigger: CATGGGCCCTAGGCACCTCAAAGTCACTGAAAAGCC...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAACCCGCACGAAGCACTaGGCACAGGAAATCAGAAGA +
Preference number: 5 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPTRTKH*AQEIRR
Trigger: TCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGGT...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 90 bp TATTTGTGTCCGTTCTGGGACATTAGTGAATCGCACTTCTGGAACTaGAACAGCACATATGACATGAGCCCACTGATTGTTCTTAGTCTG +
Preference number: 5 (lower is better)
Translates to: YLCPFWDISESHFWN*NSTYDMSPLIVLSL
Trigger: CAGACTAAGAACAATCAGTGGGCTCATGTCATATGTGCTGTTGCAGTTCCAGAAGTGCGATTCACTAATGTCCCAGAACGGACACAAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTGTCCATGCATTTCTCTaGCACCGGGCACACAGCCAT +
Preference number: 5 (lower is better)
Translates to: CTREDSIQVNPITIHAICVHAFL*HRAHSH
Trigger: ATGGCTGTGTGCCCGGTGCAAGAGAAATGCATGGAC...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 90 bp CTCTGTTGTCTTCTGGTGGAATTTCAGCTGTTACTGATGAACTTATaGAACCTTTTCCCGAGAGCTTGGTGTCGTTCAGTAAGCTTTGAT +
Preference number: 5 (lower is better)
Translates to: LCCLLVEFQLLLMNL*NLFPRAWCRSVSFD
Trigger: ATCAAAGCTTACTGAACGACACCAAGCTCTCGGGAAAAGGTTGCATAAGTTCATCAGTAACAGCTGAAATTCCACCAGAAGACAACAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp CCGAGAGCTTGGTGTCGTTCAGTAAGCTTTGATCCACTTGTATCCTaGTATCCAAAGCTTCTTTTGCTGAAGATTCTTCTAATTTCCCCA +
Preference number: 5 (lower is better)
Translates to: PRAWCRSVSFDPLVS*YPKLLLLKILLISP
Trigger: TGGGGAAATTAGAAGAATCTTCAGCAAAAGAAGCTTTGGATACCAGGATACAAGTGGATCAAAGCTTACTGAACGACACCAAGCTCTCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 90 bp TACATCTATTTGTGTCCGTTCTGGGACATTAGTGAATCGCACTTCTaGAACTGCAACAGCACATATGACATGAGCCCACTGATTGTTCTT +
Preference number: 5 (lower is better)
Translates to: YIYLCPFWDISESHF*NCNSTYDMSPLIVL
Trigger: AAGAACAATCAGTGGGCTCATGTCATATGTGCTGTTGCAGTTCCAGAAGTGCGATTCACTAATGTCCCAGAACGGACACAAATAGATGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCTTGGAGTACAGTATTaGCTGCTGTTAGCCAGCTGC +
Preference number: 5 (lower is better)
Translates to: TEATNMSLLGCLVIKLQKLGVQY*LLLASC
Trigger: GCAGCTGGCTAACAGCAGCAAATACTGTACTCCAAG...CTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAACAGCACTGGCTCTGTaGTCTTCTGGTGGAATTTCA +
Preference number: 5 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPTALAL*SSGGIS
Trigger: TGAAATTCCACCAGAAGACAACAGAGCCAGTGCTGT...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGTCTGTCTACATCTATTaGTGTCCGTTCTGGGACATT +
Preference number: 5 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKSVYIY*CPFWDI
Trigger: AATGTCCCAGAACGGACACAAATAGATGTAGACAGA...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGGATTTCGCGTTTGAGTaGACTCTATGTCTGAAGCAT +
Preference number: 5 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKDFAFE*TLCLKH
Trigger: ATGCTTCAGACATAGAGTCAACTCAAACGCGAAATC...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGGACCTCATAGAAGGTTaGAGATGTCACATCTATCAC +
Preference number: 5 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKDLIEG*RCHIYH
Trigger: GTGATAGATGTGACATCTCAAACCTTCTATGAGGTC...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCATTACCATCAGGCCATTaGACTTGGATGACTTCTCCC +
Preference number: 5 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPLPSGH*TWMTSP
Trigger: GGGAGAAGTCATCCAAGTCAAATGGCCTGATGGTAA...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp AAAATATATATAAATACACCCACCGGCTGTTGGGTGATGAGGCTGCCACTGAAGAGGAAATCAGAAGACTaGTTCCATCTTCTTCAAGGA +
Preference number: 5 (lower is better)
Translates to: KIYINTPTGCWVMRLPLKRKSED*FHLLQG
Trigger: TCCTTGAAGAAGATGGAACAAGTCTTCTGATTTCCT...CTTCAGTGGCAGCCTCATCACCCAACAGCCGGTGGGTGTATTTATATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAAACCCGCACGAAGCACTaGGCACAGGAAATCAGAAGA +
Preference number: 5 (lower is better)
Translates to: DQITEATNMSLLGCLVIKTRTKH*AQEIRR
Trigger: TCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGGT...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TTCAGAACAGGAATTATGAAGTGTTCAAAATATCAGGCCAAGATTTTTCCTCTGGCACCTCCCCTCAAATaGCAGAGACAGCATTCTGCA +
Preference number: 5 (lower is better)
Translates to: FRTGIMKCSKYQAKIFPLAPPLK*QRQHSA
Trigger: TGCAGAATGCTGTCTCTGCAATTTGAGGGGAGGTGC...CAGAGGAAAAATCTTGGCCTGATATTTTGAACACTTCATAATTCCTGTTCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTCCTCTTCCTCTCCCCTaGGATTACATCTGCTCCATA +
Preference number: 5 (lower is better)
Translates to: CTREDSIQVNPITIHAICPLPLP*DYICSI
Trigger: TATGGAGCAGATGTAATCCAAGGGGAGAGGAAGAGG...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCATTGCCCTGTAAGCTCTaGGGAGGCTTTCTTAATTTT +
Preference number: 5 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPLPCKL*GGFLNF
Trigger: AAAATTAAGAAAGCCTCCCAAGAGCTTACAGGGCAA...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp ATGTCTCTTCTTGGTTGCTTGGTAATCAAACTCCAGAAGCCTGGTTTATTACCAATTATCTTAGGAATGTaGAGCCCATTTCTCTCTTCA +
Preference number: 5 (lower is better)
Translates to: MSLLGCLVIKLQKPGLLPIILGM*SPFLSS
Trigger: TGAAGAGAGAAATGGGCTCAACATTCCTAAGATAAT...TGGTAATAAACCAGGCTTCTGGAGTTTGATTACCAAGCAACCAAGAAGAGACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTCATAATCCAAGTATCTaGGAGTACAGTATTTGCTGC +
Preference number: 5 (lower is better)
Translates to: CTREDSIQVNPITIHAICHNPSI*EYSICC
Trigger: GCAGCAAATACTGTACTCCAAGATACTTGGATTATG...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAAGATTTCGCGTTTGAGTaGACTCTATGTCTGAAGCAT +
Preference number: 5 (lower is better)
Translates to: DQITEATNMSLLGCLVIKDFAFE*TLCLKH
Trigger: ATGCTTCAGACATAGAGTCAACTCAAACGCGAAATC...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTTTGATCCAAGATACTTaGCCCCATAGAGTTTACCAT +
Preference number: 5 (lower is better)
Translates to: CTREDSIQVNPITIHAICLIQDT*PHRVYH
Trigger: ATGGTAAACTCTATGGGGCAAAGTATCTTGGATCAA...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp TGTACAAGGGAAGATAGCATACAGGTAAATCCTATTACCATACATGCCATTTGTACATATAGGCAACATTaGATCCAAGATACTTTGCCC +
Preference number: 5 (lower is better)
Translates to: CTREDSIQVNPITIHAICTYRQH*IQDTLP
Trigger: GGGCAAAGTATCTTGGATCAAATGTTGCCTATATGT...ACAAATGGCATGTATGGTAATAGGATTTACCTGTATGCTATCTTCCCTTGTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS-3UTR CAA 90 bp GATCAGATTACAGAAGCAACTAATATGTCTCTTCTTGGTTGCTTGGTAATCAAACATAATCCAAGTATCTaGGAGTACAGTATTTGCTGC +
Preference number: 5 (lower is better)
Translates to: DQITEATNMSLLGCLVIKHNPSI*EYSICC
Trigger: GCAGCAAATACTGTACTCCAAGATACTTGGATTATG...TTTGATTACCAAGCAACCAAGAAGAGACATATTAGTTGCTTCTGTAATCTGATC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TCGCTACCTGCTGCTTCACAAGTGTCATTGGGGATCTaGCCGGAGGCTTACCAAGTGGATGGCGCCAACTCT +
Preference number: 6 (lower is better)
Translates to: SLPAASQVSLGI*PEAYQVDGANS
Trigger: AGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAAGCAGCAGGTAGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TTCATCACTCGCTACCTGCTGCTTCACAAGTGTCATTaGGGATCTGGCCGGAGGCTTACCAAGTGGATGGCG +
Preference number: 6 (lower is better)
Translates to: FITRYLLLHKCH*GSGRRLTKWMA
Trigger: CGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGATGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp CTTCATCACTCGCTACCTGCTGCTTCACAAGTGTCATaGGGGATCTGGCCGGAGGCTTACCAAGTGGATGGC +
Preference number: 6 (lower is better)
Translates to: LHHSLPAASQVS*GIWPEAYQVDG
Trigger: GCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 90 bp CAGGCAATTCTTCATCACTCGCTACCTGCTGCTTCACAAGTGTCATaGGGGATCTGGCCGGAGGCTTACCAAGTGGATGGCGCCAACTCT +
Preference number: 6 (lower is better)
Translates to: QAILHHSLPAASQVS*GIWPEAYQVDGANS
Trigger: AGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGATGAAGAATTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS TCA 72 bp TGGTATGCAGTCAGCGCCCTCCTTCAGCTGAGATGGTaGAATTACAGCACTGGCTCTGTTGTCTTCTGGTGG +
Preference number: 6 (lower is better)
Translates to: WYAVSALLQLRW*NYSTGSVVFWW
Trigger: CCACCAGAAGACAACAGAGCCAGTGCTGTAATTTCACCATCTCAGCTGAAGGAGGGCGCTGACTGCATACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp AGTGACTTTGAGGTGCCTAGGGCCCATGGCAGGGTTTaGACCCTCTTCCCCACTAAATTCAGCAAATTCCTC +
Preference number: 6 (lower is better)
Translates to: SDFEVPRAHGRV*TLFPTKFSKFL
Trigger: GAGGAATTTGCTGAATTTAGTGGGGAAGAGGGTGCAAACCCTGCCATGGGCCCTAGGCACCTCAAAGTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp CACCATGTCATTCCGACAAGTGCACTTGGCAAGACCTaGTCGATGGGCTCCTTTGGATTCCATGTATGCGAG +
Preference number: 6 (lower is better)
Translates to: HHVIPTSALGKT*SMGSFGFHVCE
Trigger: CTCGCATACATGGAATCCAAAGGAGCCCATCGAGCAGGTCTTGCCAAGTGCACTTGTCGGAATGACATGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149295.2
CDS CCA 72 bp GTCATTGGGGATCTGGCCGGAGGCTTACCAAGTGGATaGCGCCAACTCTTAGTAGTTTTTGGCTGTCCTTCA +
Preference number: 6 (lower is better)
Translates to: VIGDLAGGLPSG*RQLLVVFGCPS
Trigger: TGAAGGACAGCCAAAAACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp AAGTGTCATTGGGGATCTGGCCGGAGGCTTACCAAGTaGATGGCGCCAACTCTTAGTAGTTTTTGGCTGTCC +
Preference number: 6 (lower is better)
Translates to: KCHWGSGRRLTK*MAPTLSSFWLS
Trigger: GGACAGCCAAAAACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp CCCAGCTTTAATGCTTTTTCTGGCTTTTCAGTGACTTaGAGGTGCCTAGGGCCCATGGCAGGGTTTGCACCC +
Preference number: 6 (lower is better)
Translates to: PSFNAFSGFSVT*RCLGPMAGFAP
Trigger: GGGTGCAAACCCTGCCATGGGCCCTAGGCACCTCAAAGTCACTGAAAAGCCAGAAAAAGCATTAAAGCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp AAGAAGCCTTGGGCTAGTCTTTCAAGTCGCTTTCCATaGTCCGGAGGTATAGCATACCAAGACTTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: KKPWASLSSRFP*SGGIAYQDLGS
Trigger: GGAGCCCAAGTCTTGGTATGCTATACCTCCGGAGCATGGAAAGCGACTTGAAAGACTAGCCCAAGGCTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp ACTCTTTGCCTGCTTGATGGCCATGAGAAAGTGGTATaGAGTCAGCGCCCTCCTTCAGCTGAGATGGTGAAA +
Preference number: 6 (lower is better)
Translates to: TLCLLDGHEKVV*SQRPPSAEMVK
Trigger: TTTCACCATCTCAGCTGAAGGAGGGCGCTGACTGCATACCACTTTCTCATGGCCATCAAGCAGGCAAAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp CTTAGAACCTCAGGCAATTCTTCATCACTCGCTACCTaGTGCTTCACAAGTGTCATTGGGGATCTGGCCGGA +
Preference number: 6 (lower is better)
Translates to: LRTSGNSSSLAT*CFTSVIGDLAG
Trigger: TCCGGCCAGATCCCCAATGACACTTGTGAAGCAGCAGGTAGCGAGTGATGAAGAATTGCCTGAGGTTCTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 90 bp CTCTTCAGGAAAGTACGATACACAGGGTCATCCACATACTCATTCTaGAGCCTGGAGCTTAGCACTCTTTGCCTCTTCCTCTCCCCTTGG +
Preference number: 6 (lower is better)
Translates to: LFRKVRYTGSSTYSF*SLELSTLCLFLSPW
Trigger: CCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTCCAGGCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTTTCCTGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp TTTAATGCTTTTTCTGGCTTTTCAGTGACTTTGAGGTaGCTAGGGCCCATGGCAGGGTTTGCACCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: FNAFSGFSVTLR*LGPMAGFAPSS
Trigger: GGAAGAGGGTGCAAACCCTGCCATGGGCCCTAGGCACCTCAAAGTCACTGAAAAGCCAGAAAAAGCATTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TCATTCCGACAAGTGCACTTGGCAAGACCTGCTCGATaGGCTCCTTTGGATTCCATGTATGCGAGGTATTTG +
Preference number: 6 (lower is better)
Translates to: SFRQVHLARPAR*APLDSMYARYL
Trigger: CAAATACCTCGCATACATGGAATCCAAAGGAGCCCATCGAGCAGGTCTTGCCAAGTGCACTTGTCGGAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149295.2
CDS CAA 72 bp CGATGGGCTCCTTTGGATTCCATGTATGCGAGGTATTaGTTGAACTCCCGAAACTCCTCCATGGAAGGTCTG +
Preference number: 6 (lower is better)
Translates to: RWAPLDSMYARY*LNSRNSSMEGL
Trigger: CAGACCTTCCATGGAGGAGTTTCGGGAGTTCAACAAATACCTCGCATACATGGAATCCAAAGGAGCCCATCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
ENSMUST00000149295.2
CDS CAA 90 bp AGACCTGCTCGATGGGCTCCTTTGGATTCCATGTATGCGAGGTATTaGTTGAACTCCCGAAACTCCTCCATGGAAGGTCTGAAGGTCATT +
Preference number: 6 (lower is better)
Translates to: RPARWAPLDSMYARY*LNSRNSSMEGLKVI
Trigger: AATGACCTTCAGACCTTCCATGGAGGAGTTTCGGGAGTTCAACAAATACCTCGCATACATGGAATCCAAAGGAGCCCATCGAGCAGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
ENSMUST00000149295.2
CDS TCA 72 bp TGCGTGAACAGTCCCGACTGCCCTGTGACCATCTGCTaGATTGGTGCTGGGATGAGCAAATTATCAATATCA +
Preference number: 6 (lower is better)
Translates to: CVNSPDCPVTIC*IGAGMSKLSIS
Trigger: TGATATTGATAATTTGCTCATCCCAGCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGACTGTTCACGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp CGCCCTCCTTCAGCTGAGATGGTGAAATTACAGCACTaGCTCTGTTGTCTTCTGGTGGAATTTCAGCTGTTA +
Preference number: 6 (lower is better)
Translates to: RPPSAEMVKLQH*LCCLLVEFQLL
Trigger: TAACAGCTGAAATTCCACCAGAAGACAACAGAGCCAGTGCTGTAATTTCACCATCTCAGCTGAAGGAGGGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp GCTTCTGGGATTTCCCCAGGCTCAAGGTTACTTCCATaGCCCTCTTCATCATTTTCTTCTCCCTCTGTCAAT +
Preference number: 6 (lower is better)
Translates to: ASGISPGSRLLP*PSSSFSSPSVN
Trigger: ATTGACAGAGGGAGAAGAAAATGATGAAGAGGGCCATGGAAGTAACCTTGAGCCTGGGGAAATCCCAGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp GTAGTACGGCATGAGCAGAGTGCAGATGGCACAGTTTaGCTCCATTTTTGCAACAGTTGCATTGTACTCCTG +
Preference number: 6 (lower is better)
Translates to: VVRHEQSADGTV*LHFCNSCIVLL
Trigger: CAGGAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGCACTCTGCTCATGCCGTACTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TTGTGTCCGTTCTGGGACATTAGTGAATCGCACTTCTaGAACTGCAACAGCACATATGACATGAGCCCACTG +
Preference number: 6 (lower is better)
Translates to: LCPFWDISESHF*NCNSTYDMSPL
Trigger: CAGTGGGCTCATGTCATATGTGCTGTTGCAGTTCCAGAAGTGCGATTCACTAATGTCCCAGAACGGACACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS TCA 72 bp AAGTACGATACACAGGGTCATCCACATACTCATTCTTaGGCCTGGAGCTTAGCACTCTTTGCCTCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: KYDTQGHPHTHS*AWSLALFASSS
Trigger: AGAGGAAGAGGCAAAGAGTGCTAAGCTCCAGGCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp CCGTTCTGGGACATTAGTGAATCGCACTTCTGGAACTaGAACAGCACATATGACATGAGCCCACTGATTGTT +
Preference number: 6 (lower is better)
Translates to: PFWDISESHFWN*NSTYDMSPLIV
Trigger: AACAATCAGTGGGCTCATGTCATATGTGCTGTTGCAGTTCCAGAAGTGCGATTCACTAATGTCCCAGAACGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TCCCGACTGCCCTGTGACCATCTGCTGAATTGGTGCTaGGATGAGCAAATTATCAATATCATCATAGCACTG +
Preference number: 6 (lower is better)
Translates to: SRLPCDHLLNWC*DEQIINIIIAL
Trigger: CAGTGCTATGATGATATTGATAATTTGCTCATCCCAGCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp AAAGTACGATACACAGGGTCATCCACATACTCATTCTaGAGCCTGGAGCTTAGCACTCTTTGCCTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: KVRYTGSSTYSF*SLELSTLCLFL
Trigger: GAGGAAGAGGCAAAGAGTGCTAAGCTCCAGGCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp AGGAGACTTTGTCTGCCAAAGGTGGATGAGAGGCTTTaGCCAAGACTCTGTTTCTTCAACTTCTTCGTCAAT +
Preference number: 6 (lower is better)
Translates to: RRLCLPKVDERL*PRLCFFNFFVN
Trigger: ATTGACGAAGAAGTTGAAGAAACAGAGTCTTGGGCAAAGCCTCTCATCCACCTTTGGCAGACAAAGTCTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp GAACAGTCCCGACTGCCCTGTGACCATCTGCTGAATTaGTGCTGGGATGAGCAAATTATCAATATCATCATA +
Preference number: 6 (lower is better)
Translates to: EQSRLPCDHLLN*CWDEQIINIII
Trigger: TATGATGATATTGATAATTTGCTCATCCCAGCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGACTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp CACCATAACAACTTGCATGAACCCGCACGAAGCACTTaGCACAGGAAATCAGAAGACTTGTTCCATCTTCTT +
Preference number: 6 (lower is better)
Translates to: HHNNLHEPARST*HRKSEDLFHLL
Trigger: AAGAAGATGGAACAAGTCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGGTTCATGCAAGTTGTTATGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 90 bp AGAGTGCAGATGGCACAGTTTGGCTCCATTTTTGCAACAGTTGCATaGTACTCCTGTTCAGCCATAAAGTTAGGAGACTTTGTCTGCCAA +
Preference number: 6 (lower is better)
Translates to: RVQMAQFGSIFATVA*YSCSAIKLGDFVCQ
Trigger: TTGGCAGACAAAGTCTCCTAACTTTATGGCTGAACAGGAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGCACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS TCA 72 bp CCTTTTCCCGAGAGCTTGGTGTCGTTCAGTAAGCTTTaGTCCACTTGTATCCTGGTATCCAAAGCTTCTTTT +
Preference number: 6 (lower is better)
Translates to: PFPESLVSFSKL*STCILVSKASF
Trigger: AAAAGAAGCTTTGGATACCAGGATACAAGTGGATCAAAGCTTACTGAACGACACCAAGCTCTCGGGAAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS GCA 72 bp GCAGATGGCACAGTTTGGCTCCATTTTTGCAACAGTTaGATTGTACTCCTGTTCAGCCATAAAGTTAGGAGA +
Preference number: 6 (lower is better)
Translates to: ADGTVWLHFCNS*IVLLFSHKVRR
Trigger: TCTCCTAACTTTATGGCTGAACAGGAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TTACTGATGAACTTATGCAACCTTTTCCCGAGAGCTTaGTGTCGTTCAGTAAGCTTTGATCCACTTGTATCC +
Preference number: 6 (lower is better)
Translates to: LLMNLCNLFPRA*CRSVSFDPLVS
Trigger: GGATACAAGTGGATCAAAGCTTACTGAACGACACCAAGCTCTCGGGAAAAGGTTGCATAAGTTCATCAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp GTAGTTTTTGGCTGTCCTTCAATTATCTTAGGAATGTaGAGCCCATTTCTCTCTTCACTAAGAGCTTCTGGG +
Preference number: 6 (lower is better)
Translates to: VVFGCPSIILGM*SPFLSSLRASG
Trigger: CCCAGAAGCTCTTAGTGAAGAGAGAAATGGGCTCAACATTCCTAAGATAATTGAAGGACAGCCAAAAACTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp ATGGCACAGTTTGGCTCCATTTTTGCAACAGTTGCATaGTACTCCTGTTCAGCCATAAAGTTAGGAGACTTT +
Preference number: 6 (lower is better)
Translates to: MAQFGSIFATVA*YSCSAIKLGDF
Trigger: AAAGTCTCCTAACTTTATGGCTGAACAGGAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp ATGGCTTTCTCACAAGTTTTGGATTTCGCGTTTGAGTaGACTCTATGTCTGAAGCATGTGATGTTTACCACG +
Preference number: 6 (lower is better)
Translates to: MAFSQVLDFAFE*TLCLKHVMFTT
Trigger: CGTGGTAAACATCACATGCTTCAGACATAGAGTCAACTCAAACGCGAAATCCAAAACTTGTGAGAAAGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 90 bp CAACTCTTAGTAGTTTTTGGCTGTCCTTCAATTATCTTAGGAATGTaGAGCCCATTTCTCTCTTCACTAAGAGCTTCTGGGATTTCCCCA +
Preference number: 6 (lower is better)
Translates to: QLLVVFGCPSIILGM*SPFLSSLRASGISP
Trigger: TGGGGAAATCCCAGAAGCTCTTAGTGAAGAGAGAAATGGGCTCAACATTCCTAAGATAATTGAAGGACAGCCAAAAACTACTAAGAGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CCA 72 bp TGGTGTCGTTCAGTAAGCTTTGATCCACTTGTATCCTaGTATCCAAAGCTTCTTTTGCTGAAGATTCTTCTA +
Preference number: 6 (lower is better)
Translates to: WCRSVSFDPLVS*YPKLLLLKILL
Trigger: TAGAAGAATCTTCAGCAAAAGAAGCTTTGGATACCAGGATACAAGTGGATCAAAGCTTACTGAACGACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 90 bp TCAGTAAGCTTTGATCCACTTGTATCCTGGTATCCAAAGCTTCTTTaGCTGAAGATTCTTCTAATTTCCCCAGCTTTAATGCTTTTTCTG +
Preference number: 6 (lower is better)
Translates to: SVSFDPLVSWYPKLL*LKILLISPALMLFL
Trigger: CAGAAAAAGCATTAAAGCTGGGGAAATTAGAAGAATCTTCAGCAAAAGAAGCTTTGGATACCAGGATACAAGTGGATCAAAGCTTACTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10
CDS CAA 72 bp TTTGATCCACTTGTATCCTGGTATCCAAAGCTTCTTTaGCTGAAGATTCTTCTAATTTCCCCAGCTTTAATG +
Preference number: 6 (lower is better)
Translates to: FDPLVSWYPKLL*LKILLISPALM
Trigger: CATTAAAGCTGGGGAAATTAGAAGAATCTTCAGCAAAAGAAGCTTTGGATACCAGGATACAAGTGGATCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030102.12
ENSMUST00000077851.10