RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KDM2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054611

Ensembl transcript IDs: ENSMUST00000047898.14, ENSMUST00000075856.11, ENSMUST00000116571.9, ENSMUST00000175959.2, ENSMUST00000176483.3, ENSMUST00000176532.2, ENSMUST00000176653.2, ENSMUST00000235335.2

Found 502 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCAGCCACAGGCCATCTGGAGGCTTCAGCATGGGAGGTTGGTCTTaGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAG +
Preference number: 1 (lower is better)
Translates to: ASHRPSGGFSMGGWS*LLGPRGQRCPGCSQ
Trigger: CTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCTGTGGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp ACAGGCCATCTGGAGGCTTCAGCATGGGAGGTTGGTCTTGGTTATTaGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGC +
Preference number: 1 (lower is better)
Translates to: TGHLEASAWEVGLGY*GQEVRDAQAVPRNC
Trigger: GCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp CTCTATTGCTTTGGCAGTGGCAAGGGTACAGTTAGCATCTCTCCTTaGGCGGTTCACACTTCAGACTCATGGTGCCCGGGCTCTGTCCCC +
Preference number: 1 (lower is better)
Translates to: LYCFGSGKGTVSISP*AVHTSDSWCPGSVP
Trigger: GGGGACAGAGCCCGGGCACCATGAGTCTGAAGTGTGAACCGCCCAAGGAGAGATGCTAACTGTACCCTTGCCACTGCCAAAGCAATAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR TCA 90 bp GGATCTTTGGACAGGCCGTTCAATGCAAAGTCAAAGGGGGCAGCTTaGTGGGGCTTGAAGAAGGGCGATGAGGAGTGGGAGCCATCATGC +
Preference number: 1 (lower is better)
Translates to: GSLDRPFNAKSKGAA*WGLKKGDEEWEPSC
Trigger: GCATGATGGCTCCCACTCCTCATCGCCCTTCTTCAAGCCCCATCAAGCTGCCCCCTTTGACTTTGCATTGAACGGCCTGTCCAAAGATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR TCA 90 bp GTTCTTGGCCCAGTGCAGGTGAAAGATGCACAAATTCCCCCAAACTaGGAGCCCAGCTTCCTAGCTGGCAGACGAGCAAGCAAGCAGGAA +
Preference number: 1 (lower is better)
Translates to: VLGPVQVKDAQIPPN*EPSFLAGRRASKQE
Trigger: TTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAGTTTGGGGGAATTTGTGCATCTTTCACCTGCACTGGGCCAAGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR TCA 90 bp GTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTaGAGACCAATGGAATGGCAGAGGGTCAAGGGAGCAGACTGCTGT +
Preference number: 1 (lower is better)
Translates to: VTGVSSTFQAQDSGT*RPMEWQRVKGADCC
Trigger: ACAGCAGTCTGCTCCCTTGACCCTCTGCCATTCCATTGGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 90 bp GGGTGGAGTCAGCAAGTCCCGAATTTGAGGGTCTTTAATTCCTACTaGCCACCGAAGATCAAGGGTCCTGAGAAGCGGGCAGCTGGAAGT +
Preference number: 1 (lower is better)
Translates to: GWSQQVPNLRVFNSY*PPKIKGPEKRAAGS
Trigger: ACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CCA 90 bp GAAAGATGCACAAATTCCCCCAAACTGAGAGCCCAGCTTCCTAGCTaGCAGACGAGCAAGCAAGCAGGAACTGGGATAGCACAGCCTGTG +
Preference number: 1 (lower is better)
Translates to: ERCTNSPKLRAQLPS*QTSKQAGTGIAQPV
Trigger: CACAGGCTGTGCTATCCCAGTTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAGTTTGGGGGAATTTGTGCATCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 90 bp TGGCTCTTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTGGTaGCTCACAGCCATCTGCAATGGGATCAATGCCCTCTTTCTGGCA +
Preference number: 1 (lower is better)
Translates to: WLFRRSSVQFPATTW*LTAICNGINALFLA
Trigger: TGCCAGAAAGAGGGCATTGATCCCATTGCAGATGGCTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAAGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp CACTGGCTCTTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTaGTGGCTCACAGCCATCTGCAATGGGATCAATGCCCTCTTTCTG +
Preference number: 1 (lower is better)
Translates to: HWLFRRSSVQFPATT*WLTAICNGINALFL
Trigger: CAGAAAGAGGGCATTGATCCCATTGCAGATGGCTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAAGAGCCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR TCA 90 bp CTCCCTAGAGTATGCTCAGAACCAGGCACTGCTAGGGACTATGGGTaGGAAGGTAGGGTTCTTGGCCCAGTGCAGGTGAAAGATGCACAA +
Preference number: 1 (lower is better)
Translates to: LPRVCSEPGTARDYG*EGRVLGPVQVKDAQ
Trigger: TTGTGCATCTTTCACCTGCACTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTGAGCATACTCTAGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR GCA 90 bp TGCAGTCTGAGGCCAGGCTCTGGCAAGACTGCAGCTAAGAGTAGATaGAGGACTATGAACTCGCATGTTCTACGTCCTCGGAGACACTTC +
Preference number: 1 (lower is better)
Translates to: CSLRPGSGKTAAKSR*RTMNSHVLRPRRHF
Trigger: GAAGTGTCTCCGAGGACGTAGAACATGCGAGTTCATAGTCCTGCATCTACTCTTAGCTGCAGTCTTGCCAGAGCCTGGCCTCAGACTGCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR TCA 90 bp ACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCTCTaGAAGGGTCTCTCCACCTCCCCTTTCATAAAAAGACAACAAACA +
Preference number: 1 (lower is better)
Translates to: TVPKGRGTLPAQSLL*KGLSTSPFIKRQQT
Trigger: TGTTTGTTGTCTTTTTATGAAAGGGGAGGTGGAGAGACCCTTTCAGAGCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 90 bp GGAATAAGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTaGGACCTGAAGACCAATGGAATGGCAGAGGGTCAAGGGAGCAGA +
Preference number: 1 (lower is better)
Translates to: GISHWRFLNISGPGF*DLKTNGMAEGQGSR
Trigger: TCTGCTCCCTTGACCCTCTGCCATTCCATTGGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACTTATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 90 bp TGCTTTTTGGAGATGTTAGTCCAGCTGAGGTCGAGGCTTACTGGCTaGCGCTTGATGATACCACTGAGAGCTTGTGGTACGATGGCCTTA +
Preference number: 1 (lower is better)
Translates to: CFLEMLVQLRSRLTG*RLMIPLRACGTMAL
Trigger: TAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CCA 90 bp TTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCAATaGAATGGCAGAGGGTCAAGGGAGCAGACTGCTGTTTTTAAGGTG +
Preference number: 1 (lower is better)
Translates to: FPQHFRPRILGPEDQ*NGRGSREQTAVFKV
Trigger: CACCTTAAAAACAGCAGTCTGCTCCCTTGACCCTCTGCCATTCCATTGGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 90 bp AGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCCTaGTCAGGCAGAAAGAGGACAAATGGAAAAGGGCAGTTGGTGGGC +
Preference number: 1 (lower is better)
Translates to: RNMLLLLRTQILEKP*SGRKRTNGKGQLVG
Trigger: GCCCACCAACTGCCCTTTTCCATTTGTCCTCTTTCTGCCTGAGCAGGGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 90 bp AGGCAGAAAGAGGACAAATGGAAAAGGGCAGTTGGTGGGCAGCAATaGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGT +
Preference number: 1 (lower is better)
Translates to: RQKEDKWKRAVGGQQ*VGSINDACLRICLG
Trigger: ACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCCTTTTCCATTTGTCCTCTTTCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 90 bp GATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTaGAAAAAGTCTGGTTATTGCCAGGGTCAAAGCTGGGCTGAGTGG +
Preference number: 1 (lower is better)
Translates to: DWKKQCHPLPETQFS*KKSGYCQGQSWAEW
Trigger: CCACTCAGCCCAGCTTTGACCCTGGCAATAACCAGACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 90 bp GTTCCGGAGTTTGCTTCGATTGTCTTGACCTGGCTTATCTGTGGGTaGAGTCAGCAAGTCCCGAATTTGAGGGTCTTTAATTCCTACTGC +
Preference number: 1 (lower is better)
Translates to: VPEFASIVLTWLICG*SQQVPNLRVFNSYC
Trigger: GCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGGTCAAGACAATCGAAGCAAACTCCGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR CCA 90 bp GTCGAGGCTTACTGGCTGCCGCTTGATGATACCACTGAGAGCTTGTaGTACGATGGCCTTACACCTACTCAAGTCAATTTTTGTCCAAAG +
Preference number: 1 (lower is better)
Translates to: VEAYWLPLDDTTESL*YDGLTPTQVNFCPK
Trigger: CTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR GCA 90 bp AATGGAATGGCAGAGGGTCAAGGGAGCAGACTGCTGTTTTTAAGGTaGAGCCAAGAGAAATCAGCAGATTGGAAGAAACAATGCCATCCC +
Preference number: 1 (lower is better)
Translates to: NGMAEGQGSRLLFLR*SQEKSADWKKQCHP
Trigger: GGGATGGCATTGTTTCTTCCAATCTGCTGATTTCTCTTGGCTGCACCTTAAAAACAGCAGTCTGCTCCCTTGACCCTCTGCCATTCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 90 bp AGAAAGAGGACAAATGGAAAAGGGCAGTTGGTGGGCAGCAATGGGTaGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGCA +
Preference number: 1 (lower is better)
Translates to: RKRTNGKGQLVGSNG*GVLMMPVLEYAWVA
Trigger: TGCTACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCCTTTTCCATTTGTCCTCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 90 bp GCTAGTAAGTATACAGGCTTGTACCACAGATGTTTCTGTCCAGAGTaGTGGGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTC +
Preference number: 1 (lower is better)
Translates to: ASKYTGLYHRCFCPE*WGRHFLVLARHQHV
Trigger: GACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCCCACCACTCTGGACAGAAACATCTGTGGTACAAGCCTGTATACTTACTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR GCA 90 bp GCAGCCAAGAGAAATCAGCAGATTGGAAGAAACAATGCCATCCCTTaGCAGAAACCCAGTTTTCCTGGAAAAAGTCTGGTTATTGCCAGG +
Preference number: 1 (lower is better)
Translates to: AAKRNQQIGRNNAIP*QKPSFPGKSLVIAR
Trigger: CCTGGCAATAACCAGACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAATCTGCTGATTTCTCTTGGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 90 bp AGAGACTCCTCCAAGCTGCCCTGTAACCTCCACAGGTCAGAAGTATaGCATGGTATATGTACACGCCTGCAATCACATGTAAAGTACTTT +
Preference number: 1 (lower is better)
Translates to: RDSSKLPCNLHRSEV*HGICTRLQSHVKYF
Trigger: AAAGTACTTTACATGTGATTGCAGGCGTGTACATATACCATGGCATACTTCTGACCTGTGGAGGTTACAGGGCAGCTTGGAGGAGTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR GCA 90 bp GCATGGAACTCCACATGGTTACAAAAACAAGAGACTCCTCCAAGCTaGCCTGTAACCTCCACAGGTCAGAAGTATGCCATGGTATATGTA +
Preference number: 1 (lower is better)
Translates to: AWNSTWLQKQETPPS*PVTSTGQKYAMVYV
Trigger: TACATATACCATGGCATACTTCTGACCTGTGGAGGTTACAGGGCAGCTTGGAGGAGTCTCTTGTTTTTGTAACCATGTGGAGTTCCATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp GAAGGCGGGGCAAGGCTGTGCTATCAATTATCAATCTCCTATAGATaGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGG +
Preference number: 1 (lower is better)
Translates to: EGGARLCYQLSISYR*GAECKFACITDKLW
Trigger: CCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACAGCCTTGCCCCGCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 90 bp CAGCACCTGGGTCGGTCAGTCATTAAAATATTCTTGCTCCTGATTTaGACTGAAGCCATGGTTCTCAACCTTACAAATGTTGCGCCCCTT +
Preference number: 1 (lower is better)
Translates to: QHLGRSVIKIFLLLI*TEAMVLNLTNVAPL
Trigger: AAGGGGCGCAACATTTGTAAGGTTGAGAACCATGGCTTCAGTCCAAATCAGGAGCAAGAATATTTTAATGACTGACCGACCCAGGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR GCA 90 bp AGGCTGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTaGAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGCCTCT +
Preference number: 1 (lower is better)
Translates to: RLCYQLSISYRWGAE*KFACITDKLWPQAS
Trigger: AGAGGCCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 90 bp AGTAAGTATACAGGCTTGTACCACAGATGTTTCTGTCCAGAGTGGTaGGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTCTAT +
Preference number: 1 (lower is better)
Translates to: SKYTGLYHRCFCPEW*GRHFLVLARHQHVY
Trigger: ATAGACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCCCACCACTCTGGACAGAAACATCTGTGGTACAAGCCTGTATACTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp GATGCCCAGGCTGTTCCCAGGAACTGCTCTAAGTCTGTTTACTTTTaGGGAGGTCCTTTAGCCTTACCACATAAAATACTTACACATCCA +
Preference number: 1 (lower is better)
Translates to: DAQAVPRNCSKSVYF*GGPLALPHKILTHP
Trigger: TGGATGTGTAAGTATTTTATGTGGTAAGGCTAAAGGACCTCCCCAAAAGTAAACAGACTTAGAGCAGTTCCTGGGAACAGCCTGGGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp ATGGTTCACACTCTTAATTCCAGCACTTGGCAAAGTAGAGGAAGGTaGATCTCTGAGTTTGAGGACAGCCTGGTCTATATGAAGGTTCTA +
Preference number: 1 (lower is better)
Translates to: MVHTLNSSTWQSRGR*ISEFEDSLVYMKVL
Trigger: TAGAACCTTCATATAGACCAGGCTGTCCTCAAACTCAGAGATCCACCTTCCTCTACTTTGCCAAGTGCTGGAATTAAGAGTGTGAACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 90 bp TCAATCAAGGTGACATTAGCAATTCGCCTTAGGAAGAACAGGGTCTaGTCTGTCAATTTATTGCAACCTGCCATATTGAGCTCTGTAAGG +
Preference number: 1 (lower is better)
Translates to: SIKVTLAIRLRKNRV*SVNLLQPAILSSVR
Trigger: CCTTACAGAGCTCAATATGGCAGGTTGCAATAAATTGACAGACCAGACCCTGTTCTTCCTAAGGCGAATTGCTAATGTCACCTTGATTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGAGGAGAATCTGGCCATaGAGGCAAGGCTGCCTTCCT +
Preference number: 2 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGRRIWP*RQGCLP
Trigger: AGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCT...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGGAGAATCTGGCCATaGAGGCAAGGCTGCCTTCCT +
Preference number: 2 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGRRIWP*RQGCLP
Trigger: AGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCT...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGAGAGGGAATGTGTCGTTaGCCTCAGAGCCTGCGCAGG +
Preference number: 2 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGREGMCR*PQSLRR
Trigger: CCTGCGCAGGCTCTGAGGCCAACGACACATTCCCTC...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp TCAAGGGTCCTGAGAAGCGGGCAGCTGGAAGTGCTGAGGGCAGATACTGCAGACGAGGGAATGTGTCGTTaGCCTCAGAGCCTGCGCAGG +
Preference number: 2 (lower is better)
Translates to: SRVLRSGQLEVLRADTADEGMCR*PQSLRR
Trigger: CCTGCGCAGGCTCTGAGGCCAACGACACATTCCCTC...GTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGGGTGACTGCAGTGACTaGGGTCAAGTCGAGACAAAA +
Preference number: 2 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGGDCSD*GQVETK
Trigger: TTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACC...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGTGGACAAGTCTGAGATaGAGTGCTCACAGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGWTSLR*SAHRLF
Trigger: GAAAAGCCTGTGAGCACTTCATCTCAGACTTGTCCA...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CAA 90 bp CACAGGCCATCTGGAGGCTTCAGCATGGGAGGTTGGTCTTGGTTATaGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTG +
Preference number: 2 (lower is better)
Translates to: HRPSGGFSMGGWSWL*GPRGQRCPGCSQEL
Trigger: CAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR TCA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCGCACAATCCCTGCTCTaGAAGGGTCTCTCCACCTCC +
Preference number: 2 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSAQSLL*KGLSTS
Trigger: GGAGGTGGAGAGACCCTTTCAGAGCAGGGATTGTGC...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR GCA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTGTCCACCAACCTCTCTaGCCCACCTGTGGGAGAAGG +
Preference number: 2 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCVHQPL*PTCGRR
Trigger: CCTTCTCCCACAGGTGGGGCAGAGAGGTTGGTGGAC...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp CACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCTAGAGTATGTCCACCAACCTCTCTaGCCCACCTGTGGGAGAAGG +
Preference number: 2 (lower is better)
Translates to: HHEENLAMEARLPSSLEYVHQPL*PTCGRR
Trigger: CCTTCTCCCACAGGTGGGGCAGAGAGGTTGGTGGAC...ATACTCTAGGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGGGGAGAGACTCTCCTTaGTGGGAAGGCAGGGGAAGA +
Preference number: 2 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQGRDSP*WEGRGR
Trigger: TCTTCCCCTGCCTTCCCACCAAGGAGAGTCTCTCCC...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp CAACCAGTCTTCTGTTTCCCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACGAGGGAATGTGTCGTTaGCCTCAGAGCCTGCGCAGG +
Preference number: 2 (lower is better)
Translates to: QPVFCFPHLEKHAAPSEDEGMCR*PQSLRR
Trigger: CCTGCGCAGGCTCTGAGGCCAACGACACATTCCCTC...GTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGGGAAACAGAAGACTGGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCAAGCAAGCAGGAACTaGGATAGCACAGCCTGTGCT +
Preference number: 2 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSQASRN*DSTACA
Trigger: AGCACAGGCTGTGCTATCCCAGTTCCTGCTTGCTTG...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTAAGGGCGATGAGGAGTaGGAGCCATCATGCTCCCCT +
Preference number: 2 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCKGDEE*EPSCSP
Trigger: AGGGGAGCATGATGGCTCCCACTCCTCATCGCCCTT...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGCAAAGCTGGGCTGAGTaGCAGAGGGGACACTTCTGC +
Preference number: 2 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRQSWAE*QRGHFC
Trigger: GCAGAAGTGTCCCCTCTGCCACTCAGCCCAGCTTTG...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp GCAACGGACACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCACCACTGAGAGCTTGTaGTACGATGGCCTTACACCT +
Preference number: 2 (lower is better)
Translates to: ATDTMRRIWPWRQGCLPPTTESL*YDGLTP
Trigger: AGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGT...GGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTGTCCGTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CAA 90 bp AAAGCTGGGCTGAGTGGCAGAGGGGACACTTCTGCCTCTATTGCTTaGGCAGTGGCAAGGGTACAGTTAGCATCTCTCCTTGGGCGGTTC +
Preference number: 2 (lower is better)
Translates to: KAGLSGRGDTSASIA*AVARVQLASLLGRF
Trigger: GAACCGCCCAAGGAGAGATGCTAACTGTACCCTTGCCACTGCCAAAGCAATAGAGGCAGAAGTGTCCCCTCTGCCACTCAGCCCAGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACCAAATTCCCCCAAACTaGGAGCCCAGCTTCCTAGCT +
Preference number: 2 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNQIPPN*EPSFLA
Trigger: AGCTAGGAAGCTGGGCTCTCAGTTTGGGGGAATTTG...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp TGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAAGCTAGGGACTATGGGTaGGAAGGTAGGGTTCTTGGC +
Preference number: 2 (lower is better)
Translates to: WSWLLGPRGQRCPGCSQEARDYG*EGRVLG
Trigger: GCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGC...TTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR TCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTGCCACAGGCCTCTGCTaGGCATCTCCTCATACTCTA +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAATGLC*ASPHTL
Trigger: TAGAGTATGAGGAGATGCTCAGCAGAGGCCTGTGGC...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR GCA 90 bp TGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAAGCTCCCCTCCTTCCCTaGACATATGTGCAGCACACT +
Preference number: 2 (lower is better)
Translates to: WSWLLGPRGQRCPGCSQEAPLLP*TYVQHT
Trigger: AGTGTGCTGCACATATGTGCAGGGAAGGAGGGGAGC...TTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR GCA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTAGAGTGGGAGCCATCATaGTCCCCTCCTTCCCTGCAC +
Preference number: 2 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLEWEPS*SPPSLH
Trigger: GTGCAGGGAAGGAGGGGAGCATGATGGCTCCCACTC...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCCAGAGGGGACACTTCTaGCTCTATTGCTTTGGCAGT +
Preference number: 2 (lower is better)
Translates to: SVDELSQRAEALSRHNPCQRGHF*LYCFGS
Trigger: ACTGCCAAAGCAATAGAGGCAGAAGTGTCCCCTCTG...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTCTCCTTTCTTTTCCGTaGGAGGGAGAGGAGCAGGCA +
Preference number: 2 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCLLSFP*EGEEQA
Trigger: TGCCTGCTCCTCTCCCTCCCACGGAAAAGAAAGGAG...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGCTCCTTTCTTTTCCGTaGGAGGGAGAGGAGCAGGCA +
Preference number: 2 (lower is better)
Translates to: RESLTEERHATDTMRRIWLLSFP*EGEEQA
Trigger: TGCCTGCTCCTCTCCCTCCCACGGAAAAGAAAGGAG...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCGTGGGCAGCAATGGGTaGGGAGTATTAATGATGCCT +
Preference number: 2 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSVGSNG*GVLMMP
Trigger: AGGCATCATTAATACTCCCCACCCATTGCTGCCCAC...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCGGACCTGAAGACCAATaGAATGGCAGAGGGTCAAGG +
Preference number: 2 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSGPEDQ*NGRGSR
Trigger: CCTTGACCCTCTGCCATTCCATTGGTCTTCAGGTCC...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 90 bp GCTATGACAGACATGGAGCAAAGCTTCAGACAACTCACAGCACCATaGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCC +
Preference number: 2 (lower is better)
Translates to: AMTDMEQSFRQLTAP*RPARPGVSRAVGSS
Trigger: GGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCCATGTCTGTCATAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp GGGAGTATCGAGTGGAAGACCCGACAGCAGTTAGTAGGTTGGAGGACTGATCTGATCCTGGCAGCCTATTaGCCAGCCATGTCAGCTGCT +
Preference number: 2 (lower is better)
Translates to: GSIEWKTRQQLVGWRTDLILAAY*PAMSAA
Trigger: AGCAGCTGACATGGCTGGTCAATAGGCTGCCAGGAT...CAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGTTCCTCCCTAGAGTATaGTCAGAACCAGGCACTGCT +
Preference number: 2 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQFLPRV*SEPGTA
Trigger: AGCAGTGCCTGGTTCTGAGCATACTCTAGGGAGGAA...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GTGACTGCAGTGACTGAGGTCAAGTCGAGACAAAAGGGGCATGTGGCGAATGATGGGAGAGACTCTCCTTaGTGGGAAGGCAGGGGAAGA +
Preference number: 2 (lower is better)
Translates to: VTAVTEVKSRQKGHVANDGRDSP*WEGRGR
Trigger: TCTTCCCCTGCCTTCCCACCAAGGAGAGTCTCTCCC...ATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp AACAGGGGTGGCAAGGATGAGAACAGAGGCAAAGCTGACAATCCCCTCTTCTCTGAAAAGGGCAGTTGGTaGGCAGCAATGGGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: NRGGKDENRGKADNPLFSEKGSW*AAMGGE
Trigger: CTCCCCACCCATTGCTGCCCACCAACTGCCCTTTTC...AGAGAAGAGGGGATTGTCAGCTTTGCCTCTGTTCTCATCCTTGCCACCCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTATCACTGACAAACTCTaGCCACAGGCCTCTGCTGAG +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAITDKL*PQASAE
Trigger: CTCAGCAGAGGCCTGTGGCCAGAGTTTGTCAGTGAT...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTGGACCTGAAGACCAATaGAATGGCAGAGGGTCAAGG +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAGPEDQ*NGRGSR
Trigger: CCTTGACCCTCTGCCATTCCATTGGTCTTCAGGTCC...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR GCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTGTGCAAAAAGCTCTCTaGTGCCCTAGAGAGAGGATC +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAVQKAL*CPRERI
Trigger: GATCCTCTCTCTAGGGCAGCAGAGAGCTTTTTGCAC...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR GCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCAAAAAGTCTGGTTATTaGCAGGGTCAAAGCTGGGCT +
Preference number: 2 (lower is better)
Translates to: SVDELSQRAEALSRHNPCKKSGY*QGQSWA
Trigger: AGCCCAGCTTTGACCCTGGCAATAACCAGACTTTTT...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGGTGGGCAGCAATGGGTaGGGAGTATTAATGATGCCT +
Preference number: 2 (lower is better)
Translates to: RESLTEERHATDTMRRIWVGSNG*GVLMMP
Trigger: AGGCATCATTAATACTCCCCACCCATTGCTGCCCAC...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCGTTGGTGGGCAGCAATaGGTGGGGAGTATTAATGAT +
Preference number: 2 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSVGGQQ*VGSIND
Trigger: ATCATTAATACTCCCCACCCATTGCTGCCCACCAAC...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTACAAATTCCCCCAAACTaGGAGCCCAGCTTCCTAGCT +
Preference number: 2 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLQIPPN*EPSFLA
Trigger: AGCTAGGAAGCTGGGCTCTCAGTTTGGGGGAATTTG...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp AACAGGGGTGGCAAGGATGAGAACAGAGGCAAAGCTGACAATCCCCTCTTCTCTTTGGCCCAGTGCAGGTaGAAGATGCACAAATTCCCC +
Preference number: 2 (lower is better)
Translates to: NRGGKDENRGKADNPLFSLAQCR*KMHKFP
Trigger: GGGGAATTTGTGCATCTTTCACCTGCACTGGGCCAA...AGAGAAGAGGGGATTGTCAGCTTTGCCTCTGTTCTCATCCTTGCCACCCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR TCA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGAGTTCCAGCTCCTCTaGAGAGCTTTTGATAACCCC +
Preference number: 2 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWEFQLL*RAFDNP
Trigger: GGGGTTATCAAAAGCTCTTCAGAGGAGCTGGAACTC...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTATTTGCATGTATCACTaGCAAACTCTGGCCACAGGC +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAICMYH*QTLATG
Trigger: GCCTGTGGCCAGAGTTTGTCAGTGATACATGCAAAT...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR GCA 90 bp CTGAGAGCCCAGCTTCCTAGCTGGCAGACGAGCAAGCAAGCAGGAACTGGGATAACCAGCCATGTCAGCTaGTTTTTGGAGATGTTAGTC +
Preference number: 2 (lower is better)
Translates to: LRAQLPSWQTSKQAGTGITSHVS*FLEMLV
Trigger: GACTAACATCTCCAAAAAGCAGCTGACATGGCTGGT...TATCCCAGTTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGCTCCTTTCTTTTCCGTaGGAGGGAGAGGAGCAGGCA +
Preference number: 2 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRLLSFP*EGEEQA
Trigger: TGCCTGCTCCTCTCCCTCCCACGGAAAAGAAAGGAG...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAGAAAAGGGCAGTTGGTaGGCAGCAATGGGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: AVGGQQWVGSINDACLRIEKGSW*AAMGGE
Trigger: CTCCCCACCCATTGCTGCCCACCAACTGCCCTTTTC...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAAAGGGCGATGAGGAGTaGGAGCCATCATGCTCCCCT +
Preference number: 2 (lower is better)
Translates to: AVGGQQWVGSINDACLRIKGDEE*EPSCSP
Trigger: AGGGGAGCATGATGGCTCCCACTCCTCATCGCCCTT...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTCCAACTGAGGCACTCTaGAATAAGTCACTGGCGTTT +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAPTEAL*NKSLAF
Trigger: AAACGCCAGTGACTTATTCCAGAGTGCCTCAGTTGG...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGTCGATTGTCTTGACCTaGCTTATCTGTGGGTGGAGT +
Preference number: 2 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRSIVLT*LICGWS
Trigger: ACTCCACCCACAGATAAGCCAGGTCAAGACAATCGA...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp CTGAGAGCCCAGCTTCCTAGCTGGCAGACGAGCAAGCAAGCAGGAACTGGGATAAGCAAGTCCCGAATTTaGGGGTCTTTAATTCCTACT +
Preference number: 2 (lower is better)
Translates to: LRAQLPSWQTSKQAGTGISKSRI*GSLIPT
Trigger: AGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCT...TATCCCAGTTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAGCTCCCCTCCTTCCCTaGACATATGTGCAGCACACT +
Preference number: 2 (lower is better)
Translates to: AVGGQQWVGSINDACLRIAPLLP*TYVQHT
Trigger: AGTGTGCTGCACATATGTGCAGGGAAGGAGGGGAGC...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTCACAGGTCAGAAGTATaGCATGGTATATGTACACGC +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAHRSEV*HGICTR
Trigger: GCGTGTACATATACCATGGCATACTTCTGACCTGTG...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp GGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTCTATATGACCTTCTGAAGGGCGATGAGGAGTaGGAGCCATCATGCTCCCCT +
Preference number: 2 (lower is better)
Translates to: GQALPSFSKTSACLYDLLKGDEE*EPSCSP
Trigger: AGGGGAGCATGATGGCTCCCACTCCTCATCGCCCTT...CAGAAGGTCATATAGACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTACTGCCTCTATTGCTTTaGCAGTGGCAAGGGTACAGT +
Preference number: 2 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLLPLLL*QWQGYS
Trigger: ACTGTACCCTTGCCACTGCCAAAGCAATAGAGGCAG...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCTCTGGAATAAGTCACTaGCGTTTCCTCAACATTTCA +
Preference number: 2 (lower is better)
Translates to: SVDELSQRAEALSRHNPCSGISH*RFLNIS
Trigger: TGAAATGTTGAGGAAACGCCAGTGACTTATTCCAGA...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp GTGACTGCAGTGACTGAGGTCAAGTCGAGACAAAAGGGGCATGTGGCGAATGATTGGCTTATCTGTGGGTaGAGTCAGCAAGTCCCGAAT +
Preference number: 2 (lower is better)
Translates to: VTAVTEVKSRQKGHVANDWLICG*SQQVPN
Trigger: ATTCGGGACTTGCTGACTCCACCCACAGATAAGCCA...ATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp CACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCTAGAGTATTTTTCCTGTTCAGTCTaGGCTGAGCATGTCTTAGCT +
Preference number: 2 (lower is better)
Translates to: HHEENLAMEARLPSSLEYFSCSV*AEHVLA
Trigger: AGCTAAGACATGCTCAGCCCAGACTGAACAGGAAAA...ATACTCTAGGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CAA 90 bp GAGGTCGAGGCTTACTGGCTGCCGCTTGATGATACCACTGAGAGCTaGTGGTACGATGGCCTTACACCTACTCAAGTCAATTTTTGTCCA +
Preference number: 2 (lower is better)
Translates to: EVEAYWLPLDDTTES*WYDGLTPTQVNFCP
Trigger: TGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGCCTGTGCTTTCTCCTTaGTCAACCTCTCCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWPVLSP*STSPFF
Trigger: AAAGAAAGGAGAGGTTGATCAAGGAGAAAGCACAGG...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCCCTGTGCTTTCTCCTTaGTCAACCTCTCCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCPVLSP*STSPFF
Trigger: AAAGAAAGGAGAGGTTGATCAAGGAGAAAGCACAGG...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTATTGGCCCAGTGCAGGTaGAAGATGCACAAATTCCCC +
Preference number: 2 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVLAQCR*KMHKFP
Trigger: GGGGAATTTGTGCATCTTTCACCTGCACTGGGCCAA...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCATGGGGACTGTATTATaGGTGTTGGACAGCATCAAG +
Preference number: 2 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCMGTVL*VLDSIK
Trigger: CTTGATGCTGTCCAACACTCATAATACAGTCCCCAT...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGATAACCCCAAGTAAGTaGAACAAAGGACAAGTGGGT +
Preference number: 2 (lower is better)
Translates to: RESLTEERHATDTMRRIWITPSK*NKGQVG
Trigger: ACCCACTTGTCCTTTGTTGCACTTACTTGGGGTTAT...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCGTCTTTAATTCCTACTaGCCACCGAAGATCAAGGGT +
Preference number: 2 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCVFNSY*PPKIKG
Trigger: ACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGAC...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAAGGGGTGATGGCAGAATaGGGACTGTATTATGAGTGT +
Preference number: 2 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLEGVMAE*GLYYEC
Trigger: ACACTCATAATACAGTCCCCATTCTGCCATCACCCC...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGGCAACAAAGGACAAGTaGGTGACTAGTGGAAAAGTT +
Preference number: 2 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRATKDK*VTSGKV
Trigger: AACTTTTCCACTAGTCACCCACTTGTCCTTTGTTGC...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCTGGCTTATCTGTGGGTaGAGTCAGCAAGTCCCGAAT +
Preference number: 2 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKAWLICG*SQQVPN
Trigger: ATTCGGGACTTGCTGACTCCACCCACAGATAAGCCA...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGAGTTCCAGCTCCTCTaGAGAGCTTTTGATAACCCC +
Preference number: 2 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVEFQLL*RAFDNP
Trigger: GGGGTTATCAAAAGCTCTTCAGAGGAGCTGGAACTC...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp GTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGATTTGCATGTATCACTaGCAAACTCTGGCCACAGGC +
Preference number: 2 (lower is better)
Translates to: VGSNGWGVLMMPVLEYAWICMYH*QTLATG
Trigger: GCCTGTGGCCAGAGTTTGTCAGTGATACATGCAAAT...CCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp TTATTGCAACCTGCCATATTGAGCTCTGTAAGGGAGTATCGAGTGGAAGACCCGGGTGACTGCAGTGACTaGGGTCAAGTCGAGACAAAA +
Preference number: 2 (lower is better)
Translates to: LLQPAILSSVREYRVEDPGDCSD*GQVETK
Trigger: TTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACC...CGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAGGTTGCAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCGTTGATGGACAAGTCTaGGATGAAGTGCTCACAGGC +
Preference number: 2 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAVDGQV*DEVLTG
Trigger: GCCTGTGAGCACTTCATCTCAGACTTGTCCATCAAC...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTTCCTCCCTAGAGTATaGTCAGAACCAGGCACTGCT +
Preference number: 2 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAFLPRV*SEPGTA
Trigger: AGCAGTGCCTGGTTCTGAGCATACTCTAGGGAGGAA...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCCTGCTGTTTTTAAGGTaGAGCCAAGAGAAATCAGCA +
Preference number: 2 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTLLFLR*SQEKSA
Trigger: TGCTGATTTCTCTTGGCTGCACCTTAAAAACAGCAG...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR GCA 90 bp AACAGGGGTGGCAAGGATGAGAACAGAGGCAAAGCTGACAATCCCCTCTTCTCTGCAGCTAAGAGTAGATaGAGGACTATGAACTCGCAT +
Preference number: 2 (lower is better)
Translates to: NRGGKDENRGKADNPLFSAAKSR*RTMNSH
Trigger: ATGCGAGTTCATAGTCCTGCATCTACTCTTAGCTGC...AGAGAAGAGGGGATTGTCAGCTTTGCCTCTGTTCTCATCCTTGCCACCCCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp GGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTCTATATGACCTTCTGCAAGCAAGCAGGAACTaGGATAGCACAGCCTGTGCT +
Preference number: 2 (lower is better)
Translates to: GQALPSFSKTSACLYDLLQASRN*DSTACA
Trigger: AGCACAGGCTGTGCTATCCCAGTTCCTGCTTGCTTG...CAGAAGGTCATATAGACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAGTGGGCAGCAATGGGTaGGGAGTATTAATGATGCCT +
Preference number: 2 (lower is better)
Translates to: AVGGQQWVGSINDACLRIVGSNG*GVLMMP
Trigger: AGGCATCATTAATACTCCCCACCCATTGCTGCCCAC...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTGAAACCCAGTTTTCCTaGAAAAAGTCTGGTTATTGC +
Preference number: 2 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAETQFS*KKSGYC
Trigger: GCAATAACCAGACTTTTTCCAGGAAAACTGGGTTTC...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CCA 90 bp CTGATCTGTAAGGTGACTGCAGTGACTGAGGTCAAGTCGAGACAAAAGGGGCATTCGATTGTCTTGACCTaGCTTATCTGTGGGTGGAGT +
Preference number: 2 (lower is better)
Translates to: LICKVTAVTEVKSRQKGHSIVLT*LICGWS
Trigger: ACTCCACCCACAGATAAGCCAGGTCAAGACAATCGA...ATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTGCTAGGGACTATGGGTaGGAAGGTAGGGTTCTTGGC +
Preference number: 2 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSARDYG*EGRVLG
Trigger: GCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGC...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTCAGCTTGATGGGGCTTaGAGAAGGGCGATGAGGAGT +
Preference number: 2 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSQLDGA*RRAMRS
Trigger: ACTCCTCATCGCCCTTCTTCAAGCCCCATCAAGCTG...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp ACCTGCCATATTGAGCTCTGTAAGGGAGTATCGAGTGGAAGACCCGACAGCAGTAGCAAGTCCCGAATTTaGGGGTCTTTAATTCCTACT +
Preference number: 2 (lower is better)
Translates to: TCHIELCKGVSSGRPDSSSKSRI*GSLIPT
Trigger: AGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCT...ACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCGGGGTGATGGCAGAATaGGGACTGTATTATGAGTGT +
Preference number: 2 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAGVMAE*GLYYEC
Trigger: ACACTCATAATACAGTCCCCATTCTGCCATCACCCC...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CAA 90 bp GCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTaGCATGTATCACTGACAAACTCTGGCCACAGGCCTCTGCTGAGC +
Preference number: 2 (lower is better)
Translates to: AINYQSPIDGEQSAN*HVSLTNSGHRPLLS
Trigger: GCTCAGCAGAGGCCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCCCTGTGCTTTCTCCTTaGTCAACCTCTCCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAPVLSP*STSPFF
Trigger: AAAGAAAGGAGAGGTTGATCAAGGAGAAAGCACAGG...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR TCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTTTGGCCCAGTGCAGGTaGAAGATGCACAAATTCCCC +
Preference number: 2 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSLAQCR*KMHKFP
Trigger: GGGGAATTTGTGCATCTTTCACCTGCACTGGGCCAA...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAATGGGGACTGTATTATaGGTGTTGGACAGCATCAAG +
Preference number: 2 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVMGTVL*VLDSIK
Trigger: CTTGATGCTGTCCAACACTCATAATACAGTCCCCAT...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR GCA 90 bp TGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAAACTGACAAATTTCTGTaGGGTAAAATGCTTGCTTTT +
Preference number: 2 (lower is better)
Translates to: WSWLLGPRGQRCPGCSQETDKFL*GKMLAF
Trigger: AAAAGCAAGCATTTTACCGCACAGAAATTTGTCAGT...TTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CAA 90 bp GACAAGTCTGAGATGAAGTGCTCACAGGCTTTTCTCGTGATCTGTTaGCATCCTCGAAGGTCAATCAAGGTGACATTAGCAATTCGCCTT +
Preference number: 2 (lower is better)
Translates to: DKSEMKCSQAFLVIC*HPRRSIKVTLAIRL
Trigger: AAGGCGAATTGCTAATGTCACCTTGATTGACCTTCGAGGATGCAAACAGATCACGAGAAAAGCCTGTGAGCACTTCATCTCAGACTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCAACAAAGGACAAGTaGGTGACTAGTGGAAAAGTT +
Preference number: 2 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYATKDK*VTSGKV
Trigger: AACTTTTCCACTAGTCACCCACTTGTCCTTTGTTGC...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTCAGAAAGAGGACAAATaGAAAAGGGCAGTTGGTGGG +
Preference number: 2 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSQKEDK*KRAVGG
Trigger: CCCACCAACTGCCCTTTTCCATTTGTCCTCTTTCTG...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATGTTGGTGGGCAGCAATaGGTGGGGAGTATTAATGAT +
Preference number: 2 (lower is better)
Translates to: CAINYQSPIDGEQSANLHVGGQQ*VGSIND
Trigger: ATCATTAATACTCCCCACCCATTGCTGCCCACCAAC...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATCAGAAAGAGGACAAATaGAAAAGGGCAGTTGGTGGG +
Preference number: 2 (lower is better)
Translates to: CAINYQSPIDGEQSANLHQKEDK*KRAVGG
Trigger: CCCACCAACTGCCCTTTTCCATTTGTCCTCTTTCTG...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CCA 90 bp CTTTTTGACATTAAGAAAGCTAGTAAGTATACAGGCTTGTACCACAGATGTTTCGAGAAATCAGCAGATTaGAAGAAACAATGCCATCCC +
Preference number: 2 (lower is better)
Translates to: LFDIKKASKYTGLYHRCFEKSAD*KKQCHP
Trigger: GGGATGGCATTGTTTCTTCCAATCTGCTGATTTCTC...GAAACATCTGTGGTACAAGCCTGTATACTTACTAGCTTTCTTAATGTCAAAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CAA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCAGAGGGAATGTGTCGTaGGCCTCAGAGCCTGCGCAG +
Preference number: 3 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSRGNVS*ASEPAQ
Trigger: CTGCGCAGGCTCTGAGGCCAACGACACATTCCCTCT...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CAA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGGTGTTTCTAGGGCTGTaGGCTCCTCCTGCAGAAGCC +
Preference number: 3 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQVFLGL*APPAEA
Trigger: GGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACAC...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACCAACTCACAGCACCATaGAGACCTGCCAGGCCTGGT +
Preference number: 3 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNQLTAP*RPARPG
Trigger: ACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTG...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCTGGGAAGGGATATGTTaGGGGCTAAGAGAAGGCGGG +
Preference number: 3 (lower is better)
Translates to: SVDELSQRAEALSRHNPCWEGIC*GLREGG
Trigger: CCCGCCTTCTCTTAGCCCCAAACATATCCCTTCCCA...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 72 bp GGCTTGAAGAAGGGCGATGAGGAGTGGGAGCCATCATaGTCCCCTCCTTCCCTGCACATATGTGCAGCACAC +
Preference number: 3 (lower is better)
Translates to: GLKKGDEEWEPS*SPPSLHICAAH
Trigger: GTGTGCTGCACATATGTGCAGGGAAGGAGGGGAGCATGATGGCTCCCACTCCTCATCGCCCTTCTTCAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp CTGGAGGCTTCAGCATGGGAGGTTGGTCTTGGTTATTaGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCC +
Preference number: 3 (lower is better)
Translates to: LEASAWEVGLGY*GQEVRDAQAVP
Trigger: GGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp AGGCCATCTGGAGGCTTCAGCATGGGAGGTTGGTCTTaGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGC +
Preference number: 3 (lower is better)
Translates to: RPSGGFSMGGWS*LLGPRGQRCPG
Trigger: GCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CAA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGAGAGGGAATGTGTCGTaGGCCTCAGAGCCTGCGCAG +
Preference number: 3 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWRGNVS*ASEPAQ
Trigger: CTGCGCAGGCTCTGAGGCCAACGACACATTCCCTCT...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR TCA 72 bp GACAGGCCGTTCAATGCAAAGTCAAAGGGGGCAGCTTaGTGGGGCTTGAAGAAGGGCGATGAGGAGTGGGAG +
Preference number: 3 (lower is better)
Translates to: DRPFNAKSKGAA*WGLKKGDEEWE
Trigger: CTCCCACTCCTCATCGCCCTTCTTCAAGCCCCATCAAGCTGCCCCCTTTGACTTTGCATTGAACGGCCTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR GCA 72 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTaGCCCACCTGTGGGAGAAGGGCTCAGAGAAAAGAG +
Preference number: 3 (lower is better)
Translates to: GAGNNLGVHQPL*PTCGRRAQRKE
Trigger: CTCTTTTCTCTGAGCCCTTCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR GCA 72 bp GGAGCCATCATGCTCCCCTCCTTCCCTGCACATATGTaGAGCACACTTAGCCAGACACACAGAGGCACATGC +
Preference number: 3 (lower is better)
Translates to: GAIMLPSFPAHM*STLSQTHRGTC
Trigger: GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGAGGGGAGCATGATGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp CACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTaGGCTCAGAGGGCCATGCTAAACCAGAGCCCAGAA +
Preference number: 3 (lower is better)
Translates to: HQVSELLGYTQA*AQRAMLNQSPE
Trigger: TTCTGGGCTCTGGTTTAGCATGGCCCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp TTTGGCAGTGGCAAGGGTACAGTTAGCATCTCTCCTTaGGCGGTTCACACTTCAGACTCATGGTGCCCGGGC +
Preference number: 3 (lower is better)
Translates to: FGSGKGTVSISP*AVHTSDSWCPG
Trigger: GCCCGGGCACCATGAGTCTGAAGTGTGAACCGCCCAAGGAGAGATGCTAACTGTACCCTTGCCACTGCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 72 bp AGCCACAGGCCATCTGGAGGCTTCAGCATGGGAGGTTaGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGC +
Preference number: 3 (lower is better)
Translates to: SHRPSGGFSMGG*SWLLGPRGQRC
Trigger: GCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCTGTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CAA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCGTGTTTCTAGGGCTGTaGGCTCCTCCTGCAGAAGCC +
Preference number: 3 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTVFLGL*APPAEA
Trigger: GGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACAC...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CAA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTAATGGAAAAGGGCAGTaGGTGGGCAGCAATGGGTGG +
Preference number: 3 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCNGKGQ*VGSNGW
Trigger: CCACCCATTGCTGCCCACCAACTGCCCTTTTCCATT...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp CGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTGGTaGCTCACAGCCATCTGCAATGGGATCAATGCCCTC +
Preference number: 3 (lower is better)
Translates to: RRSSVQFPATTW*LTAICNGINAL
Trigger: GAGGGCATTGATCCCATTGCAGATGGCTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CAA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCAATGGAAAAGGGCAGTaGGTGGGCAGCAATGGGTGG +
Preference number: 3 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTNGKGQ*VGSNGW
Trigger: CCACCCATTGCTGCCCACCAACTGCCCTTTTCCATT...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 72 bp TGGGCTGAGTGGCAGAGGGGACACTTCTGCCTCTATTaGTTTGGCAGTGGCAAGGGTACAGTTAGCATCTCT +
Preference number: 3 (lower is better)
Translates to: WAEWQRGHFCLY*FGSGKGTVSIS
Trigger: AGAGATGCTAACTGTACCCTTGCCACTGCCAAAGCAATAGAGGCAGAAGTGTCCCCTCTGCCACTCAGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 72 bp AGGCCAGGCTCTGGCAAGACTGCAGCTAAGAGTAGATaGAGGACTATGAACTCGCATGTTCTACGTCCTCGG +
Preference number: 3 (lower is better)
Translates to: RPGSGKTAAKSR*RTMNSHVLRPR
Trigger: CCGAGGACGTAGAACATGCGAGTTCATAGTCCTGCATCTACTCTTAGCTGCAGTCTTGCCAGAGCCTGGCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 72 bp GAGATGTTAGTCCAGCTGAGGTCGAGGCTTACTGGCTaGCGCTTGATGATACCACTGAGAGCTTGTGGTACG +
Preference number: 3 (lower is better)
Translates to: EMLVQLRSRLTG*RLMIPLRACGT
Trigger: CGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CCA 72 bp ACAAATTCCCCCAAACTGAGAGCCCAGCTTCCTAGCTaGCAGACGAGCAAGCAAGCAGGAACTGGGATAGCA +
Preference number: 3 (lower is better)
Translates to: TNSPKLRAQLPS*QTSKQAGTGIA
Trigger: TGCTATCCCAGTTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAGTTTGGGGGAATTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp CATTTCAGGCCCAGGATTCTGGGACCTGAAGACCAATaGAATGGCAGAGGGTCAAGGGAGCAGACTGCTGTT +
Preference number: 3 (lower is better)
Translates to: HFRPRILGPEDQ*NGRGSREQTAV
Trigger: AACAGCAGTCTGCTCCCTTGACCCTCTGCCATTCCATTGGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 72 bp TTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTaGTGGCTCACAGCCATCTGCAATGGGATCAATGCC +
Preference number: 3 (lower is better)
Translates to: FRRSSVQFPATT*WLTAICNGINA
Trigger: GGCATTGATCCCATTGCAGATGGCTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CAA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAAGAGGGAATGTGTCGTaGGCCTCAGAGCCTGCGCAG +
Preference number: 3 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVRGNVS*ASEPAQ
Trigger: CTGCGCAGGCTCTGAGGCCAACGACACATTCCCTCT...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTAAATGGAAAAGGGCAGTaGGTGGGCAGCAATGGGTGG +
Preference number: 3 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLNGKGQ*VGSNGW
Trigger: CCACCCATTGCTGCCCACCAACTGCCCTTTTCCATT...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCGGGCTCTGTCCCCTCTaGATGGAGTTTAGGAAAGTC +
Preference number: 3 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTGLCPL*MEFRKV
Trigger: GACTTTCCTAAACTCCATCAAGAGGGGACAGAGCCC...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR TCA 72 bp ACATGGAGCAAAGCTTCAGACAACTCACAGCACCATTaGGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTG +
Preference number: 3 (lower is better)
Translates to: TWSKASDNSQHH*DLPGLVFLGLL
Trigger: CAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp TTTGGAGATGTTAGTCCAGCTGAGGTCGAGGCTTACTaGCTGCCGCTTGATGATACCACTGAGAGCTTGTGG +
Preference number: 3 (lower is better)
Translates to: FGDVSPAEVEAY*LPLDDTTESLW
Trigger: CCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTAGAGCAGGCAATAACCTaGGTGTCCACCAACCTCTCT +
Preference number: 3 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLEQAIT*VSTNLS
Trigger: AGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTC...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCCAACTCACAGCACCATaGAGACCTGCCAGGCCTGGT +
Preference number: 3 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAQLTAP*RPARPG
Trigger: ACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTG...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCGAAAAAGTCTGGTTATaGCCAGGGTCAAAGCTGGGC +
Preference number: 3 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTEKVWL*PGSKLG
Trigger: GCCCAGCTTTGACCCTGGCAATAACCAGACTTTTTC...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CAA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACTTGCAACCTGCCATATaGAGCTCTGTAAGGGAGTAT +
Preference number: 3 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNLQPAI*SSVREY
Trigger: ATACTCCCTTACAGAGCTCAATATGGCAGGTTGCAA...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGCATGTCAGCTGCTTTTaGGAGATGTTAGTCCAGCTG +
Preference number: 3 (lower is better)
Translates to: RESLTEERHATDTMRRIWHVSCF*EMLVQL
Trigger: CAGCTGGACTAACATCTCCAAAAAGCAGCTGACATG...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCGCCTGTGCTTTCTCCTaGATCAACCTCTCCTTTCTT +
Preference number: 3 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCACAFS*INLSFL
Trigger: AAGAAAGGAGAGGTTGATCAAGGAGAAAGCACAGGC...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGTGTTTCTAGGGCTGTaGGCTCCTCCTGCAGAAGCC +
Preference number: 3 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYVFLGL*APPAEA
Trigger: GGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACAC...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR TCA 72 bp GAAAAAGTCTGGTTATTGCCAGGGTCAAAGCTGGGCTaGGTGGCAGAGGGGACACTTCTGCCTCTATTGCTT +
Preference number: 3 (lower is better)
Translates to: EKVWLLPGSKLG*VAEGTLLPLLL
Trigger: AAGCAATAGAGGCAGAAGTGTCCCCTCTGCCACTCAGCCCAGCTTTGACCCTGGCAATAACCAGACTTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR TCA 72 bp CCAGAAGAGGGCGTTAGATCTCATTACAGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTCCGG +
Preference number: 3 (lower is better)
Translates to: PEEGVRSHYRWL*ATMWLLGFELR
Trigger: CCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTAACGCCCTCTTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176483.3
3UTR-3UTR CAA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGTCCTCTGAAGAGCTTTaGATAACCCCAAGTAAGTGC +
Preference number: 3 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWSSEEL*ITPSKC
Trigger: GCACTTACTTGGGGTTATCAAAAGCTCTTCAGAGGA...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR TCA 72 bp AAGTCAGTCATGTTCCGGAGTTTGCTTCGATTGTCTTaGCCTGGCTTATCTGTGGGTGGAGTCAGCAAGTCC +
Preference number: 3 (lower is better)
Translates to: KSVMFRSLLRLS*PGLSVGGVSKS
Trigger: GGACTTGCTGACTCCACCCACAGATAAGCCAGGTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR GCA 72 bp CAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTaGTCTAAGTCTGTTTACTTTTGGGGAGGTCCTTTA +
Preference number: 3 (lower is better)
Translates to: QEVRDAQAVPRN*SKSVYFWGGPL
Trigger: TAAAGGACCTCCCCAAAAGTAAACAGACTTAGAGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp AGGTGGGGATTCAACCAGTCTTCTGTTTCCCCCACCTaGAGAAACATGCTGCTCCTTCTGAGGACACAAATT +
Preference number: 3 (lower is better)
Translates to: RWGFNQSSVSPT*RNMLLLLRTQI
Trigger: AATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGGGAAACAGAAGACTGGTTGAATCCCCACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CCA 72 bp GCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTaGCCACAGGCCTCTGCTGAGCATCTCCTCATACTC +
Preference number: 3 (lower is better)
Translates to: AECKFACITDKL*PQASAEHLLIL
Trigger: GAGTATGAGGAGATGCTCAGCAGAGGCCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 72 bp GGAGTTTGCTTCGATTGTCTTGACCTGGCTTATCTGTaGGTGGAGTCAGCAAGTCCCGAATTTGAGGGTCTT +
Preference number: 3 (lower is better)
Translates to: GVCFDCLDLAYL*VESASPEFEGL
Trigger: AAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGGTCAAGACAATCGAAGCAAACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGGCCTGTGCTTTCTCCTaGATCAACCTCTCCTTTCTT +
Preference number: 3 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRACAFS*INLSFL
Trigger: AAGAAAGGAGAGGTTGATCAAGGAGAAAGCACAGGC...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CAA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTGTATTAATAAGGTTTTaGCTCAACACCCAGGGTTCT +
Preference number: 3 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAVLIRF*LNTQGS
Trigger: AGAACCCTGGGTGTTGAGCAAAAACCTTATTAATAC...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR-3UTR CAA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGTGGTCTGTCAATTTATaGCAACCTGCCATATTGAGC +
Preference number: 3 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWWSVNL*QPAILS
Trigger: GCTCAATATGGCAGGTTGCAATAAATTGACAGACCA...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR GCA 72 bp TCCAAGCTGCCCTGTAACCTCCACAGGTCAGAAGTATaGCATGGTATATGTACACGCCTGCAATCACATGTA +
Preference number: 3 (lower is better)
Translates to: SKLPCNLHRSEV*HGICTRLQSHV
Trigger: TACATGTGATTGCAGGCGTGTACATATACCATGGCATACTTCTGACCTGTGGAGGTTACAGGGCAGCTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp TTAGGAAAGTCTGAGGCTAGATTCCAGGAAATGGGGTaGGAAGTGGGAAGGGATATGTTTGGGGCTAAGAGA +
Preference number: 3 (lower is better)
Translates to: LGKSEARFQEMG*EVGRDMFGAKR
Trigger: TCTCTTAGCCCCAAACATATCCCTTCCCACTTCCCACCCCATTTCCTGGAATCTAGCCTCAGACTTTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 72 bp TGGTGGGAAGGCAGGGGAAGATTTTCCTGTTCAGTCTaGGCTGAGCATGTCTTAGCTAATCTTCTGTATCAG +
Preference number: 3 (lower is better)
Translates to: WWEGRGRFSCSV*AEHVLANLLYQ
Trigger: CTGATACAGAAGATTAGCTAAGACATGCTCAGCCCAGACTGAACAGGAAAATCTTCCCCTGCCTTCCCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp GCCATATTGAGCTCTGTAAGGGAGTATCGAGTGGAAGACCCGACAGCAGTTAGTCAGCAAGTCCCGAATTaGAGGGTCTTTAATTCCTAC +
Preference number: 3 (lower is better)
Translates to: AILSSVREYRVEDPTAVSQQVPN*RVFNSY
Trigger: GTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTG...ACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR-3UTR CAA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTGAGCAGGCAATAACCTaGGTGTCCACCAACCTCTCT +
Preference number: 3 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSEQAIT*VSTNLS
Trigger: AGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTC...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR-3UTR CAA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTATCCTCTGAAGAGCTTTaGATAACCCCAAGTAAGTGC +
Preference number: 3 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVSSEEL*ITPSKC
Trigger: GCACTTACTTGGGGTTATCAAAAGCTCTTCAGAGGA...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR TCA 72 bp AGTTTAGGGGGTGATGGCAGAATGGGGACTGTATTATaGGTGTTGGACAGCATCAAGCTCAGGGACAAGAAA +
Preference number: 3 (lower is better)
Translates to: SLGGDGRMGTVL*VLDSIKLRDKK
Trigger: TTTCTTGTCCCTGAGCTTGATGCTGTCCAACACTCATAATACAGTCCCCATTCTGCCATCACCCCCTAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR GCA 72 bp GCAGAGGGTCAAGGGAGCAGACTGCTGTTTTTAAGGTaGAGCCAAGAGAAATCAGCAGATTGGAAGAAACAA +
Preference number: 3 (lower is better)
Translates to: AEGQGSRLLFLR*SQEKSADWKKQ
Trigger: TTGTTTCTTCCAATCTGCTGATTTCTCTTGGCTGCACCTTAAAAACAGCAGTCTGCTCCCTTGACCCTCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR GCA 72 bp GAGATTAAAGGCATGCAAGCACCACTCCTAGCCCCCTaGATTATGAGTTTTAAGTATGAAACAGCACCTGGG +
Preference number: 3 (lower is better)
Translates to: EIKGMQAPLLAP*IMSFKYETAPG
Trigger: CCCAGGTGCTGTTTCATACTTAAAACTCATAATGCAGGGGGCTAGGAGTGGTGCTTGCATGCCTTTAATCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp TATACAGGCTTGTACCACAGATGTTTCTGTCCAGAGTaGTGGGGCAGGCACTTCCTAGTTTTAGCAAGACAT +
Preference number: 3 (lower is better)
Translates to: YTGLYHRCFCPE*WGRHFLVLARH
Trigger: ATGTCTTGCTAAAACTAGGAAGTGCCTGCCCCACCACTCTGGACAGAAACATCTGTGGTACAAGCCTGTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp TACTGGCTGCCGCTTGATGATACCACTGAGAGCTTGTaGTACGATGGCCTTACACCTACTCAAGTCAATTTT +
Preference number: 3 (lower is better)
Translates to: YWLPLDDTTESL*YDGLTPTQVNF
Trigger: AAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CCA 72 bp CTGTTTTTAAGGTGCAGCCAAGAGAAATCAGCAGATTaGAAGAAACAATGCCATCCCTTGCCAGAAACCCAG +
Preference number: 3 (lower is better)
Translates to: LFLRCSQEKSAD*KKQCHPLPETQ
Trigger: CTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAATCTGCTGATTTCTCTTGGCTGCACCTTAAAAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CCA 72 bp ACTCTTAATTCCAGCACTTGGCAAAGTAGAGGAAGGTaGATCTCTGAGTTTGAGGACAGCCTGGTCTATATG +
Preference number: 3 (lower is better)
Translates to: TLNSSTWQSRGR*ISEFEDSLVYM
Trigger: CATATAGACCAGGCTGTCCTCAAACTCAGAGATCCACCTTCCTCTACTTTGCCAAGTGCTGGAATTAAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp TTTGCTTCGATTGTCTTGACCTGGCTTATCTGTGGGTaGAGTCAGCAAGTCCCGAATTTGAGGGTCTTTAAT +
Preference number: 3 (lower is better)
Translates to: FASIVLTWLICG*SQQVPNLRVFN
Trigger: ATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGGTCAAGACAATCGAAGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000176532.2
ENSMUST00000235335.2
3UTR CCA 72 bp CCGGTTATAATGGTTCACACTCTTAATTCCAGCACTTaGCAAAGTAGAGGAAGGTGGATCTCTGAGTTTGAG +
Preference number: 3 (lower is better)
Translates to: PVIMVHTLNSST*QSRGRWISEFE
Trigger: CTCAAACTCAGAGATCCACCTTCCTCTACTTTGCCAAGTGCTGGAATTAAGAGTGTGAACCATTATAACCGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp GTGACATTAGCAATTCGCCTTAGGAAGAACAGGGTCTaGTCTGTCAATTTATTGCAACCTGCCATATTGAGC +
Preference number: 3 (lower is better)
Translates to: VTLAIRLRKNRV*SVNLLQPAILS
Trigger: GCTCAATATGGCAGGTTGCAATAAATTGACAGACCAGACCCTGTTCTTCCTAAGGCGAATTGCTAATGTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
3UTR CCA 72 bp GCTGTTCCCAGGAACTGCTCTAAGTCTGTTTACTTTTaGGGAGGTCCTTTAGCCTTACCACATAAAATACTT +
Preference number: 3 (lower is better)
Translates to: AVPRNCSKSVYF*GGPLALPHKIL
Trigger: AAGTATTTTATGTGGTAAGGCTAAAGGACCTCCCCAAAAGTAAACAGACTTAGAGCAGTTCCTGGGAACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CCA 72 bp GGTCGGTCAGTCATTAAAATATTCTTGCTCCTGATTTaGACTGAAGCCATGGTTCTCAACCTTACAAATGTT +
Preference number: 3 (lower is better)
Translates to: GRSVIKIFLLLI*TEAMVLNLTNV
Trigger: AACATTTGTAAGGTTGAGAACCATGGCTTCAGTCCAAATCAGGAGCAAGAATATTTTAATGACTGACCGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGCACTGTGGTGGTCGCTaGGGCCAGCCCCAGGGGATG +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGHCGGR*GQPQGM
Trigger: CATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTG...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGCACTGTGGTGGTCGCTaGGGCCAGCCCCAGGGGATG +
Preference number: 4 (lower is better)
Translates to: PARPGVSRAVGSSCRSREHCGGR*GQPQGM
Trigger: CATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTG...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGCGGGCTGGGCAGTGCTaGATTAGCACGCGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGRAGQC*ISTRGL
Trigger: TAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCG...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGCGGAGGACACAGGATTaGTTCATGCGTCCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGRRTQD*FMRPGP
Trigger: TGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCG...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGTGTAGCCGCAGCAACTaGCGCCGTTTGAAGCGTTCA +
Preference number: 4 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGCSRSN*RRLKRS
Trigger: TGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACA...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR GCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGTTTCCCGTACCATGGTaGGCTCGGTGGCTTGTAGCC +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGFPVPW*ARWLVA
Trigger: GGCTACAAGCCACCGAGCGCACCATGGTACGGGAAA...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGACAATGGATGTCCCGTaGAGCTCTTTGGTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGTMDVP*SSLVGL
Trigger: GAGGCCCACCAAAGAGCTCCACGGGACATCCATTGT...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGGACCTGGCTTATCTGTaGGTGGAGTCAGCAAGTCCC +
Preference number: 4 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGDLAYL*VESASP
Trigger: GGGACTTGCTGACTCCACCCACAGATAAGCCAGGTC...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGATCCTGGCAGCCTATTaGCCAGCCATGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGILAAY*PAMSAA
Trigger: AGCAGCTGACATGGCTGGTCAATAGGCTGCCAGGAT...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCCCCTCCTCATCCCCATaGTGGGGGTTTCGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSPSSSP*WGFRAG
Trigger: CCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGG...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGATGGCTCCTGACACAATaGGGGAGGCTGCAGCAGGCC +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRWLLTQ*GRLQQA
Trigger: GGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCA...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGTCACGGCTGGCACTGTaGTGGTCGCTGGGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: RESLTEERHATDTMRRIWSRLAL*WSLGPA
Trigger: GGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGA...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGCCTTTTCCCGTACCATaGTGCGCTCGGTGGCTTGTA +
Preference number: 4 (lower is better)
Translates to: PARPGVSRAVGSSCRSREPFPVP*CARWLV
Trigger: TACAAGCCACCGAGCGCACCATGGTACGGGAAAAGG...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCCAGCATGGAAGTAGGTaGGTGAGGCGGGGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCQHGSR*VRRGCE
Trigger: CTCACACCCCCGCCTCACTCACCTACTTCCATGCTG...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAATGGCAGAGGAGGCCGTaGTGGCCTGCAGCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: WSWLLGPRGQRCPGCSQEWQRRP*WPAAWA
Trigger: TGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCA...TTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp CTGAGAGCCCAGCTTCCTAGCTGGCAGACGAGCAAGCAAGCAGGAACTGGGATATTTCGGGCTGGGCAGTaGTGCATTAGCACGCGGGGG +
Preference number: 4 (lower is better)
Translates to: LRAQLPSWQTSKQAGTGIFRAGQ*CISTRG
Trigger: CCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAA...TATCCCAGTTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGTGTGATGTCAAGGCCTaGCAGCCGGAAGTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGCDVKA*QPEVSH
Trigger: ATGACTGACTTCCGGCTGGCAGGCCTTGACATCACA...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGAGCACTCTTCTCCGCCTaGCTCCTGACACAATGGGGG +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRALFSA*LLTQWG
Trigger: CCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGC...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGTATCTACCCAGTCAATaGAATCCACCGTGGAAGGCC +
Preference number: 4 (lower is better)
Translates to: PARPGVSRAVGSSCRSREYLPSQ*NPPWKA
Trigger: GGCCTTCCACGGTGGATTTCATTGACTGGGTAGATA...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGGCAACTGCCGCCGTTTaGAGCGTTCATCACGGCTGG +
Preference number: 4 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQATAAV*SVHHGW
Trigger: CCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGC...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR TCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGAGAAGATCAAGGGTCCTaGGAAGCGGGCAGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGREDQGS*EAGSWK
Trigger: CTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTC...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGACACAATGGGGGAGGCTaGAGCAGGCCTTACAGGTGT +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRHNGGG*SRPYRC
Trigger: ACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTG...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GCAACGGACACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCTGTAGCCGCAGCAACTaGCGCCGTTTGAAGCGTTCA +
Preference number: 4 (lower is better)
Translates to: ATDTMRRIWPWRQGCLPPCSRSN*RRLKRS
Trigger: TGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACA...GGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTGTCCGTTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR CCA 90 bp GCAACGGACACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCACAATGGATGTCCCGTaGAGCTCTTTGGTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: ATDTMRRIWPWRQGCLPPTMDVP*SSLVGL
Trigger: GAGGCCCACCAAAGAGCTCCACGGGACATCCATTGT...GGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTGTCCGTTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGGAGCTTGTGGTACGATaGCCTTACACCTACTCAAGT +
Preference number: 4 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGELVVR*PYTYSS
Trigger: ACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTC...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTATGGAAGTAGGTGAGTaGGGCGGGGGTGTGAGAGGC +
Preference number: 4 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCMEVGE*GGGVRG
Trigger: GCCTCTCACACCCCCGCCTCACTCACCTACTTCCAT...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTCAGCATGGAAGTAGGTaGGTGAGGCGGGGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAQHGSR*VRRGCE
Trigger: CTCACACCCCCGCCTCACTCACCTACTTCCATGCTG...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCTGTAGCCGCAGCAACTaGCGCCGTTTGAAGCGTTCA +
Preference number: 4 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSCSRSN*RRLKRS
Trigger: TGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACA...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR GCA 90 bp CTAAACAGGGGTGGCAAGGATGAGAACAGAGGCAAAGCTGACAATCCCCTCTTCCCCTCCTCATCCCCATaGTGGGGGTTTCGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: LNRGGKDENRGKADNPLFPSSSP*WGFRAG
Trigger: CCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGG...GAAGAGGGGATTGTCAGCTTTGCCTCTGTTCTCATCCTTGCCACCCCTGTTTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCATCCAGACCTCCCGCTaGATCCAGCTTTCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSIQTSR*IQLSSP
Trigger: TGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGAT...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCTGGCTCCTGACACAATaGGGGAGGCTGCAGCAGGCC +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCWLLTQ*GRLQQA
Trigger: GGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCA...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCTAGAGTATGCACTCTTCTCCGCCTaGCTCCTGACACAATGGGGG +
Preference number: 4 (lower is better)
Translates to: HHEENLAMEARLPSSLEYALFSA*LLTQWG
Trigger: CCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGC...ATACTCTAGGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCTCACGGCTGGCACTGTaGTGGTCGCTGGGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKASRLAL*WSLGPA
Trigger: GGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGA...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCTAGAGTATAGCGTTCATCACGGCTaGCACTGTGGTGGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: HHEENLAMEARLPSSLEYSVHHG*HCGGRW
Trigger: CCAGCGACCACCACAGTGCCAGCCGTGATGAACGCT...ATACTCTAGGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTCCATGGTGCGCTCGGTaGCTTGTAGCCGCAGCAACT +
Preference number: 4 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCPWCAR*LVAAAT
Trigger: AGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGG...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
3UTR CAA 72 bp CAGGCCATCTGGAGGCTTCAGCATGGGAGGTTGGTCTaGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGG +
Preference number: 4 (lower is better)
Translates to: QAIWRLQHGRLV*VIGAKRSEMPR
Trigger: CCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCGCAACTGCCGCCGTTTaGAGCGTTCATCACGGCTGG +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCATAAV*SVHHGW
Trigger: CCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGC...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR TCA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGGAAGATCAAGGGTCCTaGGAAGCGGGCAGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: RESLTEERHATDTMRRIWEDQGS*EAGSWK
Trigger: CTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTC...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCACCGTGGAAGGCCGCTaGACCATATTCTCAAGCCTG +
Preference number: 4 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSTVEGR*TIFSSL
Trigger: CAGGCTTGAGAATATGGTGCAGCGGCCTTCCACGGT...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGCACAATGGGGGAGGCTaGAGCAGGCCTTACAGGTGT +
Preference number: 4 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRHNGGG*SRPYRC
Trigger: ACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTG...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GCAACGGACACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCCAGACAGCTCCTTTTTaGCGCTGGGATTGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: ATDTMRRIWPWRQGCLPPQTAPF*RWDCSP
Trigger: AGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTG...GGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTGTCCGTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACATCCAGACCTCCCGCTaGATCCAGCTTTCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNIQTSR*IQLSSP
Trigger: TGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGAT...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGGTCTTTAATTCCTACTaGCCACCGAAGATCAAGGGT +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGVFNSY*PPKIKG
Trigger: ACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGAC...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGTTCTCGCTCTTCCTCTaGAGTCTCATAGTATCGTGT +
Preference number: 4 (lower is better)
Translates to: PARPGVSRAVGSSCRSREFSLFL*SLIVSC
Trigger: ACACGATACTATGAGACTCCAGAGGAAGAGCGAGAA...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGTTTTTAGGGCTACATTaGGGATCCCAAACTTGGCCA +
Preference number: 4 (lower is better)
Translates to: PARPGVSRAVGSSCRSREFLGLH*GSQTWP
Trigger: TGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAA...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCCTGAATGAGGCAGTCTaGGTGCTAAGCACTGTCGGA +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCLNEAV*VLSTVG
Trigger: TCCGACAGTGCTTAGCACCCAGACTGCCTCATTCAG...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATCGGCTGGCACTGTGGTaGTCGCTGGGGCCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYRLALW*SLGPAP
Trigger: TGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCG...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp TCTGGAGGCTTCAGCATGGGAGGTTGGTCTTGGTTATaGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: SGGFSMGGWSWL*GPRGQRCPGCS
Trigger: GGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CAA 72 bp CAGCCACAGGCCATCTGGAGGCTTCAGCATGGGAGGTaGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATG +
Preference number: 4 (lower is better)
Translates to: QPQAIWRLQHGR*VLVIGAKRSEM
Trigger: CATCTCTGACCTCTTGGCCCCAATAACCAAGACCAACCTCCCATGCTGAAGCCTCCAGATGGCCTGTGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGATATCTACCCAGTCAATaGAATCCACCGTGGAAGGCC +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRYLPSQ*NPPWKA
Trigger: GGCCTTCCACGGTGGATTTCATTGACTGGGTAGATA...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGCTTTCGTCTCCATCCTaGGCCCAACTGCCCCGGCCA +
Preference number: 4 (lower is better)
Translates to: VGSNGWGVLMMPVLEYAWLSSPS*AQLPRP
Trigger: TGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAG...CCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGCTTTCGTCTCCATCCTaGGCCCAACTGCCCCGGCCA +
Preference number: 4 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRLSSPS*AQLPRP
Trigger: TGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAG...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCGTTGATGGACAAGTCTaGGATGAAGTGCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCVDGQV*DEVLTG
Trigger: GCCTGTGAGCACTTCATCTCAGACTTGTCCATCAAC...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CTGAGAGCCCAGCTTCCTAGCTGGCAGACGAGCAAGCAAGCAGGAACTGGGATAAAGCTTTGCATTTCCTaGACCGCACTCTTCTCCGCC +
Preference number: 4 (lower is better)
Translates to: LRAQLPSWQTSKQAGTGIKLCIS*TALFSA
Trigger: GGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTT...TATCCCAGTTCCTGCTTGCTTGCTCGTCTGCCAGCTAGGAAGCTGGGCTCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGACTTGCACACAAGCTTTaGATTTCCTGCACCGCACTC +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRLAHKL*ISCTAL
Trigger: GAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAG...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGACTCCACATTCTCCTTaGACACAAGCTTTGCATTTC +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGTPHSP*TQALHF
Trigger: GAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGT...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCTTTCCCGTACCATGGTaGGCTCGGTGGCTTGTAGCC +
Preference number: 4 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTFPVPW*ARWLVA
Trigger: GGCTACAAGCCACCGAGCGCACCATGGTACGGGAAA...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AAGAGCACTGGCTCTTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTGGTGAGGCCGTGATGGCCTaGAGCTTGGGCACAATGGAT +
Preference number: 4 (lower is better)
Translates to: KSTGSSEGPQFNSQQPRGEAVMA*SLGTMD
Trigger: ATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTC...ACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAAGAGCCAGTGCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGCTCAAGCCACCCCGCTaGATATACTCTACATTAAAA +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGLKPPR*IYSTLK
Trigger: TTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAG...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTTCTTCAGACTTaGAAGACTTCGGCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: PARPGVSRAVGSSCRSRESFLQT*KTSAGF
Trigger: AAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACT...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGTTTTCTTCAGACTTaGAAGACTTCGGCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGSFLQT*KTSAGF
Trigger: AAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACT...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGTGGGGATCCCAAACTTaGCCATTGTGGGATCCCCGG +
Preference number: 4 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWWGSQT*PLWDPR
Trigger: CCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCA...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TATAGATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACGGCTGGCACTGTGGTaGTCGCTGGGGCCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: YRWGAECKFACITDKLWPRLALW*SLGPAP
Trigger: TGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCG...TGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTACCATGGTGCGCTCGGTaGCTTGTAGCCGCAGCAACT +
Preference number: 4 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLPWCAR*LVAAAT
Trigger: AGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGG...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR CCA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAACCATGGTGCGCTCGGTaGCTTGTAGCCGCAGCAACT +
Preference number: 4 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLEPWCAR*LVAAAT
Trigger: AGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGG...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR CCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGGCAGCTTGGGCACAATaGATGTCCCGTGGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRAAWAQ*MSRGAL
Trigger: AAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGC...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGATGGCTTATCTGTGGGTaGAGTCAGCAAGTCCCGAAT +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRWLICG*SQQVPN
Trigger: ATTCGGGACTTGCTGACTCCACCCACAGATAAGCCA...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp TTAGTCCAGCTGAGGTCGAGGCTTACTGGCTGCCGCTaGATGATACCACTGAGAGCTTGTGGTACGATGGCC +
Preference number: 4 (lower is better)
Translates to: LVQLRSRLTGCR*MIPLRACGTMA
Trigger: GGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
CDS-3UTR TCA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATTGGCAGAGGAGGCCGTaGTGGCCTGCAGCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYWQRRP*WPAAWA
Trigger: TGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCA...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCATCGCTTATTGTTCATaGGTCGGGCTTCTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSIAYCS*VGLLCP
Trigger: TGGACAGAGAAGCCCGACGCATGAACAATAAGCGAT...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCTAGAGTATAAGCTTTGCATTTCCTaGACCGCACTCTTCTCCGCC +
Preference number: 4 (lower is better)
Translates to: HHEENLAMEARLPSSLEYKLCIS*TALFSA
Trigger: GGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTT...ATACTCTAGGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGAATTTCTTCATGTCCCTaGAGTAGTGGCAGACTCCAC +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRISSCP*SSGRLH
Trigger: GTGGAGTCTGCCACTACTGCAGGGACATGAAGAAAT...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCCGGAGGACACAGGATTaGTTCATGCGTCCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTRRTQD*FMRPGP
Trigger: TGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCG...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCGGGTCGTGGATGAGCTaGAGCATGGAAGTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCGSWMS*SMEVGE
Trigger: CTCACCTACTTCCATGCTGCAGCTCATCCACGACCC...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCCGGGCTGGGCAGTGCTaGATTAGCACGCGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYARAGQC*ISTRGL
Trigger: TAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCG...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGGATTTATACCATGTCTTaGACACTCGCATACATTCAC +
Preference number: 4 (lower is better)
Translates to: PQSLRRVRERLSLVGRQGIYTMS*TLAYIH
Trigger: GTGAATGTATGCGAGTGTGCAAGACATGGTATAAAT...CCCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGTGTGATGTCAAGGCCTaGCAGCCGGAAGTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRCDVKA*QPEVSH
Trigger: ATGACTGACTTCCGGCTGGCAGGCCTTGACATCACA...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTCTGAATGAGGCAGTCTaGGTGCTAAGCACTGTCGGA +
Preference number: 4 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCLNEAV*VLSTVG
Trigger: TCCGACAGTGCTTAGCACCCAGACTGCCTCATTCAG...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCGTGTGTTCACATCCATaGCATCCACCATCCGACGAC +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCVCSHP*HPPSDD
Trigger: GTCGTCGGATGGTGGATGTCATGGATGTGAACACAC...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCGGAGTATACACAGCATaGATCCAACCTGAGGGAATA +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCGVYTA*IQPEGI
Trigger: TATTCCCTCAGGTTGGATTCATGCTGTGTATACTCC...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCATGGAAGTAGGTGAGTaGGGCGGGGGTGTGAGAGGC +
Preference number: 4 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAMEVGE*GGGVRG
Trigger: GCCTCTCACACCCCCGCCTCACTCACCTACTTCCAT...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGCAACTGCCGCCGTTTaGAGCGTTCATCACGGCTGG +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVATAAV*SVHHGW
Trigger: CCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGC...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR GCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACGGGATCGGTTGGTTATaGAGTATACATAGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNGIGWL*SIHSAP
Trigger: TGGAGCGCTATGTATACTGCATAACCAACCGATCCC...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGATGGGTGAGATGCACTTaGCTATCCTTTTTAGGGCTA +
Preference number: 4 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRWVRCT*LSFLGL
Trigger: TAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCA...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACATTTCTTCATGTCCCTaGAGTAGTGGCAGACTCCAC +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNISSCP*SSGRLH
Trigger: GTGGAGTCTGCCACTACTGCAGGGACATGAAGAAAT...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACGTACCACGCAATCTCTaGCTGTACCGAATCCTTTCT +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNVPRNL*LYRILS
Trigger: AGAAAGGATTCGGTACAGCCAGAGATTGCGTGGTAC...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCTTCTCGCTCTTCCTCTaGAGTCTCATAGTATCGTGT +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCFSLFL*SLIVSC
Trigger: ACACGATACTATGAGACTCCAGAGGAAGAGCGAGAA...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCAGCGTTCATCACGGCTaGCACTGTGGTGGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYASVHHG*HCGGRW
Trigger: CCAGCGACCACCACAGTGCCAGCCGTGATGAACGCT...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp CTGAGTGGCAGAGGGGACACTTCTGCCTCTATTGCTTaGGCAGTGGCAAGGGTACAGTTAGCATCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: LSGRGDTSASIA*AVARVQLASLL
Trigger: AAGGAGAGATGCTAACTGTACCCTTGCCACTGCCAAAGCAATAGAGGCAGAAGTGTCCCCTCTGCCACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp AGGCAGTACTTCTCTGGTCACATGGTTAACCTAGAGTaGGGACAAATGCCAGCCACAGGCCATCTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: RQYFSGHMVNLE*GQMPATGHLEA
Trigger: AGCCTCCAGATGGCCTGTGGCTGGCATTTGTCCCAACTCTAGGTTAACCATGTGACCAGAGAAGTACTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCAATTCGTTGGCAATCTaGCACCCGGTCACCCAGAAA +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCNSLAI*HPVTQK
Trigger: TTTCTGGGTGACCGGGTGTCAGATTGCCAACGAATT...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCGGTGACTGCAGTGACTaGGGTCAAGTCGAGACAAAA +
Preference number: 4 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTGDCSD*GQVETK
Trigger: TTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACC...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACACAGGCTTTTCTCGTaGTCTGTTTGCATCCTCGAA +
Preference number: 4 (lower is better)
Translates to: WSWLLGPRGQRCPGCSQEHRLFS*SVCILE
Trigger: TTCGAGGATGCAAACAGATCACGAGAAAAGCCTGTG...TTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTTGGACAAGTCTGAGATaGAGTGCTCACAGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAWTSLR*SAHRLF
Trigger: GAAAAGCCTGTGAGCACTTCATCTCAGACTTGTCCA...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCGTATCGTGTCCATTGTaGCATGGTCATTTCAATCCC +
Preference number: 4 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSVSCPL*HGHFNP
Trigger: GGGATTGAAATGACCATGGCACAATGGACACGATAC...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGGTATCGTGTCCATTGTaGCATGGTCATTTCAATCCC +
Preference number: 4 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQVSCPL*HGHFNP
Trigger: GGGATTGAAATGACCATGGCACAATGGACACGATAC...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCACTCCACATTCTCCTTaGACACAAGCTTTGCATTTC +
Preference number: 4 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSTPHSP*TQALHF
Trigger: GAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGT...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCGAGGCCGTGATGGCCTaGAGCTTGGGCACAATGGAT +
Preference number: 4 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAEAVMA*SLGTMD
Trigger: ATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTC...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TATAGATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCATTTCGGGCTGGGCAGTaGTGCATTAGCACGCGGGGG +
Preference number: 4 (lower is better)
Translates to: YRWGAECKFACITDKLWPFRAGQ*CISTRG
Trigger: CCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAA...TGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCCTCAAGCCACCCCGCTaGATATACTCTACATTAAAA +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCLKPPR*IYSTLK
Trigger: TTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAG...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TCTGTGGATGAACTGTCCCAAAGGGCAGAGGCACTCTCCCGGCACAATCCCTGCCCTTCAAGTTCAAAATaGGTGAGATGCACTTGCCTA +
Preference number: 4 (lower is better)
Translates to: SVDELSQRAEALSRHNPCPSSSK*VRCTCL
Trigger: TAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGG...GCAGGGATTGTGCCGGGAGAGTGCCTCTGCCCTTTGGGACAGTTCATCCACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACACTTGGGATCGCTACTaGCAAGTTCTTCCAGCAAAA +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNTWDRY*QVLPAK
Trigger: TTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGT...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACACACTCCCAGCAATTTaGCAATTCCTCGTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNTLPAI*QFLVQQ
Trigger: TTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGT...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGCAGCTTGGGCACAATaGATGTCCCGTGGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: VGSNGWGVLMMPVLEYAWAAWAQ*MSRGAL
Trigger: AAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGC...CCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCACCACTGAGAGCTTGTaGTACGATGGCCTTACACCT +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCTTESL*YDGLTP
Trigger: AGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGT...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CAACCAGTCTTCTGTTTCCCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACTGGCTTATCTGTGGGTaGAGTCAGCAAGTCCCGAAT +
Preference number: 4 (lower is better)
Translates to: QPVFCFPHLEKHAAPSEDWLICG*SQQVPN
Trigger: ATTCGGGACTTGCTGACTCCACCCACAGATAAGCCA...GTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGGGAAACAGAAGACTGGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CAACCAGTCTTCTGTTTCCCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACGGGATCGGTTGGTTATaGAGTATACATAGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: QPVFCFPHLEKHAAPSEDGIGWL*SIHSAP
Trigger: TGGAGCGCTATGTATACTGCATAACCAACCGATCCC...GTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGGGAAACAGAAGACTGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CAACCAGTCTTCTGTTTCCCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACATCGCTTATTGTTCATaGGTCGGGCTTCTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: QPVFCFPHLEKHAAPSEDIAYCS*VGLLCP
Trigger: TGGACAGAGAAGCCCGACGCATGAACAATAAGCGAT...GTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGGGAAACAGAAGACTGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGGGTCGTGGATGAGCTaGAGCATGGAAGTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVGSWMS*SMEVGE
Trigger: CTCACCTACTTCCATGCTGCAGCTCATCCACGACCC...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGTTTTTAGGGCTACATTaGGGATCCCAAACTTGGCCA +
Preference number: 4 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRFLGLH*GSQTWP
Trigger: TGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAA...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGGAGTATCGAGTGGAAGACCCGACAGCAGTTAGTAGGTTGGAGGACTGATCTGGAGCTTGTGGTACGATaGCCTTACACCTACTCAAGT +
Preference number: 4 (lower is better)
Translates to: GSIEWKTRQQLVGWRTDLELVVR*PYTYSS
Trigger: ACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTC...CAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS-3UTR CCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCTCGATTGTCTTGACCTaGCTTATCTGTGGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCSIVLT*LICGWS
Trigger: ACTCCACCCACAGATAAGCCAGGTCAAGACAATCGA...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp TGCAAAAAGCTCTCTGCTGCCCTAGAGAGAGGATCTTaGGACAGGCCGTTCAATGCAAAGTCAAAGGGGGCA +
Preference number: 4 (lower is better)
Translates to: CKKLSAALERGS*DRPFNAKSKGA
Trigger: TGCCCCCTTTGACTTTGCATTGAACGGCCTGTCCAAAGATCCTCTCTCTAGGGCAGCAGAGAGCTTTTTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR TCA 90 bp AAGAGCACTGGCTCTTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTGGTCAAGTTCAAAATGGGTaGGATGCACTTGCCTATCCT +
Preference number: 4 (lower is better)
Translates to: KSTGSSEGPQFNSQQPRGQVQNG*DALAYP
Trigger: AGGATAGGCAAGTGCATCTCACCCATTTTGAACTTG...ACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAAGAGCCAGTGCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGCAAGTTCAAAATGGGTaGGATGCACTTGCCTATCCT +
Preference number: 4 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWQVQNG*DALAYP
Trigger: AGGATAGGCAAGTGCATCTCACCCATTTTGAACTTG...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGAAAGTTCTTTGCGGCTaGGGTAGCGGAAGACAGACA +
Preference number: 4 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRKVLCG*GSGRQT
Trigger: TGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTT...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp CTTATCTGTGGGTGGAGTCAGCAAGTCCCGAATTTGAGGGTCTTTAATTCCTACTACCTGGCAGCCTATTaGCCAGCCATGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LICGWSQQVPNLRVFNSYYLAAY*PAMSAA
Trigger: AGCAGCTGACATGGCTGGTCAATAGGCTGCCAGGTA...GTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS-3UTR GCA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCGACTTCGGCAGGCTTTaGCAAGTCCATCGTAATCCA +
Preference number: 4 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKADFGRL*QVHRNP
Trigger: TGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTC...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCTGGGTGAGATGCACTTaGCTATCCTTTTTAGGGCTA +
Preference number: 4 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTWVRCT*LSFLGL
Trigger: TAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCA...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CTAAACAGGGGTGGCAAGGATGAGAACAGAGGCAAAGCTGACAATCCCCTCTTCGTACCACGCAATCTCTaGCTGTACCGAATCCTTTCT +
Preference number: 4 (lower is better)
Translates to: LNRGGKDENRGKADNPLFVPRNL*LYRILS
Trigger: AGAAAGGATTCGGTACAGCCAGAGATTGCGTGGTAC...GAAGAGGGGATTGTCAGCTTTGCCTCTGTTCTCATCCTTGCCACCCCTGTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCTTCTCAAGCCTGGTGTaGCTAAACTCTAGGCTGATA +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCFSSLV*LNSRLI
Trigger: TATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAA...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAAGGGGCCGTAAGACTTTaGCTTGTACAGCTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLEGAVRL*LVQLLH
Trigger: ATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCC...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GAGTTTGCTTCGATTGTCTTGACCTGGCTTATCTGTGGGTGGAGTCAGCAAGTCACCACTGAGAGCTTGTaGTACGATGGCCTTACACCT +
Preference number: 4 (lower is better)
Translates to: EFASIVLTWLICGWSQQVTTESL*YDGLTP
Trigger: AGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGT...GACTTGCTGACTCCACCCACAGATAAGCCAGGTCAAGACAATCGAAGCAAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
3UTR CAA 72 bp GCTTACTGGCTGCCGCTTGATGATACCACTGAGAGCTaGTGGTACGATGGCCTTACACCTACTCAAGTCAAT +
Preference number: 4 (lower is better)
Translates to: AYWLPLDDTTES*WYDGLTPTQVN
Trigger: ATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
CDS-3UTR TCA 90 bp GGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTCTATATGACCTTCTGGTGTGTTCACATCCATaGCATCCACCATCCGACGAC +
Preference number: 4 (lower is better)
Translates to: GQALPSFSKTSACLYDLLVCSHP*HPPSDD
Trigger: GTCGTCGGATGGTGGATGTCATGGATGTGAACACAC...CAGAAGGTCATATAGACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAGAACACGTAACTGAATaGGGCAGTCTGGGTGCTAAG +
Preference number: 4 (lower is better)
Translates to: AVGGQQWVGSINDACLRIEHVTE*GSLGAK
Trigger: CTTAGCACCCAGACTGCCTCATTCAGTTACGTGTTC...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGGTGACTGCAGTGACTaGGGTCAAGTCGAGACAAAA +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVGDCSD*GQVETK
Trigger: TTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACC...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGTTGATGGACAAGTCTaGGATGAAGTGCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVVDGQV*DEVLTG
Trigger: GCCTGTGAGCACTTCATCTCAGACTTGTCCATCAAC...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACATTAGACAGTACTTTTaGACTTTAGGGTACTGCATC +
Preference number: 4 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNIRQYF*TLGYCI
Trigger: GATGCAGTACCCTAAAGTGCAAAAGTACTGTCTAAT...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp ACCTGCCATATTGAGCTCTGTAAGGGAGTATCGAGTGGAAGACCCGACAGCAGTACCAGCCATGTCAGCTaGTTTTTGGAGATGTTAGTC +
Preference number: 4 (lower is better)
Translates to: TCHIELCKGVSSGRPDSSTSHVS*FLEMLV
Trigger: GACTAACATCTCCAAAAAGCAGCTGACATGGCTGGT...ACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS-3UTR CCA 90 bp GTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGTTGAGCTCAATTCGTTaGCAATCTGACACCCGGTCA +
Preference number: 4 (lower is better)
Translates to: VGSNGWGVLMMPVLEYAWLSSIR*QSDTRS
Trigger: TGACCGGGTGTCAGATTGCCAACGAATTGAGCTCAA...CCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGTTAGGTGGGATCGGTTaGTTATGCAGTATACATAGC +
Preference number: 4 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWLGGIG*LCSIHS
Trigger: GCTATGTATACTGCATAACCAACCGATCCCACCTAA...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp AAGAGCACTGGCTCTTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTGGTCCTTCAAGTTCAAAATaGGTGAGATGCACTTGCCTA +
Preference number: 4 (lower is better)
Translates to: KSTGSSEGPQFNSQQPRGPSSSK*VRCTCL
Trigger: TAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGG...ACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAAGAGCCAGTGCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp TATAGATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACCTTTTCCCGTACCATaGTGCGCTCGGTGGCTTGTA +
Preference number: 4 (lower is better)
Translates to: YRWGAECKFACITDKLWPPFPVP*CARWLV
Trigger: TACAAGCCACCGAGCGCACCATGGTACGGGAAAAGG...TGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGGAGCTTGTGGTACGATaGCCTTACACCTACTCAAGT +
Preference number: 4 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRELVVR*PYTYSS
Trigger: ACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTC...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGATGGCTGTCCTGGAAATaGCTCTGTATATTAGGCTGG +
Preference number: 4 (lower is better)
Translates to: LITDGCEPPCGCWDLNSGWLSWK*LCILGW
Trigger: CCAGCCTAATATACAGAGCCATTTCCAGGACAGCCA...TCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176483.3
CDS-3UTR TCA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAAAGCAAGTCCCGAATTTaGGGGTCTTTAATTCCTACT +
Preference number: 4 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLESKSRI*GSLIPT
Trigger: AGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCT...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCACAGGCTTTTCTCGTaGTCTGTTTGCATCCTCGAA +
Preference number: 4 (lower is better)
Translates to: VGGQQWVGSINDACLRICHRLFS*SVCILE
Trigger: TTCGAGGATGCAAACAGATCACGAGAAAAGCCTGTG...GCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTATGGACAAGTCTGAGATaGAGTGCTCACAGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVWTSLR*SAHRLF
Trigger: GAAAAGCCTGTGAGCACTTCATCTCAGACTTGTCCA...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTTTTCATCATCTGAAATaGCATCATCTTCATAGCGAC +
Preference number: 4 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAFHHLK*HHLHSD
Trigger: GTCGCTATGAAGATGATGGCATTTCAGATGATGAAA...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp GGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTCTATATGACCTTCTGGACTTCGGCAGGCTTTaGCAAGTCCATCGTAATCCA +
Preference number: 4 (lower is better)
Translates to: GQALPSFSKTSACLYDLLDFGRL*QVHRNP
Trigger: TGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTC...CAGAAGGTCATATAGACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGGTGTCCATTGTGCCATaGTCATTTCAATCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRVSIVP*SFQSPS
Trigger: AGAAGGGGATTGAAATGACCATGGCACAATGGACAC...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAAAAGCTTATCCCTTTTTaGCCACTGTACTATAGGGAC +
Preference number: 4 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLEKLIPF*PLYYRD
Trigger: GTCCCTATAGTACAGTGGCCAAAAAGGGATAAGCTT...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAAGGAACCCTCACCTTTaGCCTGGTAGGGAATTTAAG +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVRNPHL*PGREFK
Trigger: CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCT...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCAGGAACCCTCACCTTTaGCCTGGTAGGGAATTTAAG +
Preference number: 4 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYARNPHL*PGREFK
Trigger: CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCT...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGACACTCCCAGCAATTTaGCAATTCCTCGTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: VGSNGWGVLMMPVLEYAWTLPAI*QFLVQQ
Trigger: TTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGT...CCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTGACCTGGCTTATCTGTaGGTGGAGTCAGCAAGTCCC +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSDLAYL*VESASP
Trigger: GGGACTTGCTGACTCCACCCACAGATAAGCCAGGTC...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTAGATCCACCAATCTCTaGCTGTACCGAATCCTTTCT +
Preference number: 4 (lower is better)
Translates to: ITDGCEPPCGCWDLNSGPRSTNL*LYRILS
Trigger: AGAAAGGATTCGGTACAGCCAGAGATTGGTGGATCT...AGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176483.3
CDS-3UTR TCA 90 bp TATAGATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCAGAACACGTAACTGAATaGGGCAGTCTGGGTGCTAAG +
Preference number: 4 (lower is better)
Translates to: YRWGAECKFACITDKLWPEHVTE*GSLGAK
Trigger: CTTAGCACCCAGACTGCCTCATTCAGTTACGTGTTC...TGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCTCAAAATGGGTGAGATaGACTTGCCTATCCTTTTTA +
Preference number: 4 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCSKWVR*TCLSFL
Trigger: TAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGA...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TATAGATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGACAGCTCCTTTTTaGCGCTGGGATTGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: YRWGAECKFACITDKLWPQTAPF*RWDCSP
Trigger: AGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTG...TGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCATTTATACCATGTCTTaGACACTCGCATACATTCAC +
Preference number: 4 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTIYTMS*TLAYIH
Trigger: GTGAATGTATGCGAGTGTGCAAGACATGGTATAAAT...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAACCAGCCATGTCAGCTaGTTTTTGGAGATGTTAGTC +
Preference number: 4 (lower is better)
Translates to: AVGGQQWVGSINDACLRITSHVS*FLEMLV
Trigger: GACTAACATCTCCAAAAAGCAGCTGACATGGCTGGT...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGATTCACTGTGAAGTCTaGATCCGGCATCTTTATTCC +
Preference number: 4 (lower is better)
Translates to: VGSNGWGVLMMPVLEYAWIHCEV*IRHLYS
Trigger: GGAATAAAGATGCCGGATCCAGACTTCACAGTGAAT...CCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATAGTGTCCATTGTGCCATaGTCATTTCAATCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: AVGGQQWVGSINDACLRIVSIVP*SFQSPS
Trigger: AGAAGGGGATTGAAATGACCATGGCACAATGGACAC...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCTTCTCAAGCCTGGTGTaGCTAAACTCTAGGCTGATA +
Preference number: 4 (lower is better)
Translates to: VGGQQWVGSINDACLRICFSSLV*LNSRLI
Trigger: TATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAA...GCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCAAATCCTTAGTTAGGTaGGATCGGTTGGTTATGCAG +
Preference number: 4 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKAKSLVR*DRLVMQ
Trigger: CTGCATAACCAACCGATCCCACCTAACTAAGGATTT...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GTAGTGGCTTACATTTGTAACTCCAGTTCCAGGGGTCTGATTCCTCTTTGGCCTACTTGGGATCGCTACTaGCAAGTTCTTCCAGCAAAA +
Preference number: 4 (lower is better)
Translates to: VVAYICNSSSRGLIPLWPTWDRY*QVLPAK
Trigger: TTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGT...AGGCCAAAGAGGAATCAGACCCCTGGAACTGGAGTTACAAATGTAAGCCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTAAGGAAGAACAGGGTCTaGTCTGTCAATTTATTGCAA +
Preference number: 4 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLRKNRV*SVNLLQ
Trigger: TTGCAATAAATTGACAGACCAGACCCTGTTCTTCCT...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TTATTGCAACCTGCCATATTGAGCTCTGTAAGGGAGTATCGAGTGGAAGACCCGTCTTTTAATCCTACCTaGCAGCCTATTGACCAGCCA +
Preference number: 4 (lower is better)
Translates to: LLQPAILSSVREYRVEDPSFNPT*QPIDQP
Trigger: TGGCTGGTCAATAGGCTGCCAGGTAGGATTAAAAGA...CGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAGGTTGCAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS-3UTR CCA 90 bp CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGAGTACCTTGGCTGTCCTaGAAATGGCTCTGTATATTA +
Preference number: 4 (lower is better)
Translates to: LITDGCEPPCGCWDLNSGVPWLS*KWLCIL
Trigger: TAATATACAGAGCCATTTCCAGGACAGCCAAGGTAC...TCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176483.3
CDS-3UTR TCA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATTGGGTCTCTTCATTCTaGTCTACTTCTCCACAGAGA +
Preference number: 4 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYWVSSF*STSPQR
Trigger: TCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCA...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAAACTGCATCTCTAAGATaGCATTTGTTGATTCTGTCT +
Preference number: 4 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLETASLR*HLLILS
Trigger: AGACAGAATCAACAAATGCCATCTTAGAGATGCAGT...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTATTAGGTGGGATCGGTTaGTTATGCAGTATACATAGC +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVLGGIG*LCSIHS
Trigger: GCTATGTATACTGCATAACCAACCGATCCCACCTAA...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp GTAGTGGCTTACATTTGTAACTCCAGTTCCAGGGGTCTGATTCCTCTTTGGCCTAAGCTTATCCCTTTTTaGCCACTGTACTATAGGGAC +
Preference number: 4 (lower is better)
Translates to: VVAYICNSSSRGLIPLWPKLIPF*PLYYRD
Trigger: GTCCCTATAGTACAGTGGCCAAAAAGGGATAAGCTT...AGGCCAAAGAGGAATCAGACCCCTGGAACTGGAGTTACAAATGTAAGCCACTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
3UTR CAA 72 bp TATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTaGCATGTATCACTGACAAACTCTGGCCACAGGCCT +
Preference number: 4 (lower is better)
Translates to: YQSPIDGEQSAN*HVSLTNSGHRP
Trigger: AGGCCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp CGCATGTTCTACGTCCTCGGAGACACTTCTCTCTTTTaGCAAGGACCAACTCTCACCTCTAAAAACCATTCT +
Preference number: 4 (lower is better)
Translates to: RMFYVLGDTSLF*QGPTLTSKNHS
Trigger: AGAATGGTTTTTAGAGGTGAGAGTTGGTCCTTGCAAAAAGAGAGAAGTGTCTCCGAGGACGTAGAACATGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp GAGATGAAGTGCTCACAGGCTTTTCTCGTGATCTGTTaGCATCCTCGAAGGTCAATCAAGGTGACATTAGCA +
Preference number: 4 (lower is better)
Translates to: EMKCSQAFLVIC*HPRRSIKVTLA
Trigger: TGCTAATGTCACCTTGATTGACCTTCGAGGATGCAAACAGATCACGAGAAAAGCCTGTGAGCACTTCATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
CDS-3UTR TCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTCCACCTTGGTGGATGTaGTACCAAACAGAAGTACCT +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSPPWWM*YQTEVP
Trigger: AGGTACTTCTGTTTGGTATCACATCCACCAAGGTGG...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATAGCAAGTCCCGAATTTaGGGGTCTTTAATTCCTACT +
Preference number: 4 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYSKSRI*GSLIPT
Trigger: AGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCT...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTACTGTATATCTTTAATTaGATGGGGATGTTGAAGCTA +
Preference number: 4 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLLYIFN*MGMLKL
Trigger: TAGCTTCAACATCCCCATGCAATTAAAGATATACAG...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTTTGAGCTCAATTCGTTaGCAATCTGACACCCGGTCA +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSLSSIR*QSDTRS
Trigger: TGACCGGGTGTCAGATTGCCAACGAATTGAGCTCAA...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp CTTTTTGACATTAAGAAAGCTAGTAAGTATACAGGCTTGTACCACAGATGTTTCTGGGGATCCCAAACTTaGCCATTGTGGGATCCCCGG +
Preference number: 4 (lower is better)
Translates to: LFDIKKASKYTGLYHRCFWGSQT*PLWDPR
Trigger: CCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCA...GAAACATCTGTGGTACAAGCCTGTATACTTACTAGCTTTCTTAATGTCAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTGGGGCCGTAAGACTTTaGCTTGTACAGCTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSGAVRL*LVQLLH
Trigger: ATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCC...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTTCGATTGTCTTGACCTaGCTTATCTGTGGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSSIVLT*LICGWS
Trigger: ACTCCACCCACAGATAAGCCAGGTCAAGACAATCGA...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp AAACAGCACCTGGGTCGGTCAGTCATTAAAATATTCTaGCTCCTGATTTGGACTGAAGCCATGGTTCTCAAC +
Preference number: 4 (lower is better)
Translates to: KQHLGRSVIKIF*LLIWTEAMVLN
Trigger: GTTGAGAACCATGGCTTCAGTCCAAATCAGGAGCAAGAATATTTTAATGACTGACCGACCCAGGTGCTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR TCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATAATTCGTTGGCAATCTaGCACCCGGTCACCCAGAAA +
Preference number: 4 (lower is better)
Translates to: CAINYQSPIDGEQSANLHNSLAI*HPVTQK
Trigger: TTTCTGGGTGACCGGGTGTCAGATTGCCAACGAATT...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTGGAGTATACACAGCATaGATCCAACCTGAGGGAATA +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSGVYTA*IQPEGI
Trigger: TATTCCCTCAGGTTGGATTCATGCTGTGTATACTCC...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTTGGGTCTCTTCATTCTaGTCTACTTCTCCACAGAGA +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSWVSSF*STSPQR
Trigger: TCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCA...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATAAAGTTCTTTGCGGCTaGGGTAGCGGAAGACAGACA +
Preference number: 4 (lower is better)
Translates to: CAINYQSPIDGEQSANLHKVLCG*GSGRQT
Trigger: TGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTT...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR TCA 90 bp CTTTTTGACATTAAGAAAGCTAGTAAGTATACAGGCTTGTACCACAGATGTTTCATCCTGGCAGCCTATTaGCCAGCCATGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LFDIKKASKYTGLYHRCFILAAY*PAMSAA
Trigger: AGCAGCTGACATGGCTGGTCAATAGGCTGCCAGGAT...GAAACATCTGTGGTACAAGCCTGTATACTTACTAGCTTTCTTAATGTCAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTATTTCATCATCTGAAATaGCATCATCTTCATAGCGAC +
Preference number: 4 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVFHHLK*HHLHSD
Trigger: GTCGCTATGAAGATGATGGCATTTCAGATGATGAAA...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATCTTGCACACAAGCTTTaGATTTCCTGCACCGCACTC +
Preference number: 4 (lower is better)
Translates to: CAINYQSPIDGEQSANLHLAHKL*ISCTAL
Trigger: GAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAG...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATACCACTGAGAGCTTGTaGTACGATGGCCTTACACCT +
Preference number: 4 (lower is better)
Translates to: CAINYQSPIDGEQSANLHTTESL*YDGLTP
Trigger: AGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGT...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp CTTTTTGACATTAAGAAAGCTAGTAAGTATACAGGCTaGTACCACAGATGTTTCTGTCCAGAGTGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: LFDIKKASKYTG*YHRCFCPEWWG
Trigger: GCCCCACCACTCTGGACAGAAACATCTGTGGTACAAGCCTGTATACTTACTAGCTTTCTTAATGTCAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp GTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGTATATCTTTAATTaGATGGGGATGTTGAAGCTA +
Preference number: 4 (lower is better)
Translates to: VGGQQWVGSINDACLRICLYIFN*MGMLKL
Trigger: TAGCTTCAACATCCCCATGCAATTAAAGATATACAG...GCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATTCAAAATGGGTGAGATaGACTTGCCTATCCTTTTTA +
Preference number: 4 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYSKWVR*TCLSFL
Trigger: TAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGA...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTAAATCCTTAGTTAGGTaGGATCGGTTGGTTATGCAG +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSKSLVR*DRLVMQ
Trigger: CTGCATAACCAACCGATCCCACCTAACTAAGGATTT...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTATTAGACAGTACTTTTaGACTTTAGGGTACTGCATC +
Preference number: 4 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSIRQYF*TLGYCI
Trigger: GATGCAGTACCCTAAAGTGCAAAAGTACTGTCTAAT...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR GCA 90 bp CTTTTTGACATTAAGAAAGCTAGTAAGTATACAGGCTTGTACCACAGATGTTTCACCAGCCATGTCAGCTaGTTTTTGGAGATGTTAGTC +
Preference number: 4 (lower is better)
Translates to: LFDIKKASKYTGLYHRCFTSHVS*FLEMLV
Trigger: GACTAACATCTCCAAAAAGCAGCTGACATGGCTGGT...GAAACATCTGTGGTACAAGCCTGTATACTTACTAGCTTTCTTAATGTCAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR GCA 90 bp CTTTTTGACATTAAGAAAGCTAGTAAGTATACAGGCTTGTACCACAGATGTTTCGTCTTTAATTCCTACTaGCCACCGAAGATCAAGGGT +
Preference number: 4 (lower is better)
Translates to: LFDIKKASKYTGLYHRCFVFNSY*PPKIKG
Trigger: ACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGAC...GAAACATCTGTGGTACAAGCCTGTATACTTACTAGCTTTCTTAATGTCAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CCA 90 bp TGTGCTATCAATTATCAATCTCCTATAGATGGGGAGCAGAGTGCAAATTTGCATAGGAAGAACAGGGTCTaGTCTGTCAATTTATTGCAA +
Preference number: 4 (lower is better)
Translates to: CAINYQSPIDGEQSANLHRKNRV*SVNLLQ
Trigger: TTGCAATAAATTGACAGACCAGACCCTGTTCTTCCT...ATGCAAATTTGCACTCTGCTCCCCATCTATAGGAGATTGATAATTGATAGCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
3UTR CAA 72 bp TATCTCCCATTCCCAAGTGTCAGAAGAAAGACATCTTaGCTCTTTCTAAAACCAAGTGGGAAACTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: YLPFPSVRRKTS*LFLKPSGKLLE
Trigger: TTCTAAAAGTTTCCCACTTGGTTTTAGAAAGAGCAAAGATGTCTTTCTTCTGACACTTGGGAATGGGAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS TCA 90 bp CCATGGTGCGCTCGGTGGCTTGTAGCCGCAGCAACTGCCGCCGTTTaGAGCGTTCATCACGGCTGGCACTGTGGTGGTCGCTGGGGCCAG +
Preference number: 5 (lower is better)
Translates to: PWCARWLVAAATAAV*SVHHGWHCGGRWGQ
Trigger: CTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS TCA 90 bp GGAGAAACCGGGTCGTGGATGAGCTGCAGCATGGAAGTAGGTGAGTaGGGCGGGGGTGTGAGAGGCTCCTCGCAGCTCCTCAGGGGCCGT +
Preference number: 5 (lower is better)
Translates to: GETGSWMSCSMEVGE*GGGVRGSSQLLRGR
Trigger: ACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS GCA 90 bp ACGCGGGGGTTAGGGCGAAGGTTGGCAGAGGAGGCCGTGATGGCCTaGAGCTTGGGCACAATGGATGTCCCGTGGAGCTCTTTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: TRGLGRRLAEEAVMA*SLGTMDVPWSSLVG
Trigger: GCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGAGCAACTGCCGCCGTTaGAAGCGTTCATCACGGCTG +
Preference number: 5 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGSNCRR*KRSSRL
Trigger: CAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCT...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR CAA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGGTCCCGTGGAGCTCTTaGGTGGGCCTCTGTAGAGTG +
Preference number: 5 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGVPWSS*VGLCRV
Trigger: CACTCTACAGAGGCCCACCAAAGAGCTCCACGGGAC...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGTCGGAGGACACAGGATaGCTTCATGCGTCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: DLPGLVFLGLLAPPAEAGSEDTG*LHASRS
Trigger: GGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGA...CCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 90 bp TTTTCCCGTACCATGGTGCGCTCGGTGGCTTGTAGCCGCAGCAACTaGCGCCGTTTGAAGCGTTCATCACGGCTGGCACTGTGGTGGTCG +
Preference number: 5 (lower is better)
Translates to: FSRTMVRSVACSRSN*RRLKRSSRLALWWS
Trigger: CGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 90 bp TGCATTTCCTGCACCGCACTCTTCTCCGCCTGGCTCCTGACACAATaGGGGAGGCTGCAGCAGGCCTTACAGGTGTTAAGCGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: CISCTALFSAWLLTQ*GRLQQALQVLSVEL
Trigger: CAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS-3UTR CAA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGCCTTGCACACAAGCTTaGCATTTCCTGCACCGCACT +
Preference number: 5 (lower is better)
Translates to: PARPGVSRAVGSSCRSREPCTQA*HFLHRT
Trigger: AGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGG...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 90 bp CTTGCACACAAGCTTTGCATTTCCTGCACCGCACTCTTCTCCGCCTaGCTCCTGACACAATGGGGGAGGCTGCAGCAGGCCTTACAGGTG +
Preference number: 5 (lower is better)
Translates to: LAHKLCISCTALFSA*LLTQWGRLQQALQV
Trigger: CACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CCA 90 bp GAGGAGGCCGTGATGGCCTGCAGCTTGGGCACAATGGATGTCCCGTaGAGCTCTTTGGTGGGCCTCTGTAGAGTGACAGTGAGGTACGAT +
Preference number: 5 (lower is better)
Translates to: EEAVMACSLGTMDVP*SSLVGLCRVTVRYD
Trigger: ATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGAAGTTTTCTTCAGACTaGGAAGACTTCGGCAGGCTT +
Preference number: 5 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGKFSSD*EDFGRL
Trigger: AAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTT...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGTTGGGGATCCCAAACTaGGCCATTGTGGGATCCCCG +
Preference number: 5 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQLGIPN*AIVGSP
Trigger: CGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAA...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACTTCCGCTTCTGGGCTTaGTCCGAGCTGTCTTCCTGG +
Preference number: 5 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNFRFWA*SELSSW
Trigger: CCAGGAAGACAGCTCGGACAAAGCCCAGAAGCGGAA...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TCCTTCCCTGCACATATGTGCAGCACACTTAGCCAGACACACAGAGGCACATGCGGGTTAGGGCGAAGGTaGGCAGAGGAGGCCGTGATG +
Preference number: 5 (lower is better)
Translates to: SFPAHMCSTLSQTHRGTCGLGRR*AEEAVM
Trigger: CATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCC...GCATGTGCCTCTGTGTGTCTGGCTAAGTGTGCTGCACATATGTGCAGGGAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 90 bp AGTGGCAGACTCCACATTCTCCTTGCACACAAGCTTTGCATTTCCTaGACCGCACTCTTCTCCGCCTGGCTCCTGACACAATGGGGGAGG +
Preference number: 5 (lower is better)
Translates to: SGRLHILLAHKLCIS*TALFSAWLLTQWGR
Trigger: CCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS-3UTR CAA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTAGCAACTGCCGCCGTTaGAAGCGTTCATCACGGCTG +
Preference number: 5 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCSNCRR*KRSSRL
Trigger: CAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCT...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS-3UTR CAA 90 bp AGTCACTGGCGTTTCCTCAACATTTCAGGCCCAGGATTCTGGGACCTGAAGACCGTCCCGTGGAGCTCTTaGGTGGGCCTCTGTAGAGTG +
Preference number: 5 (lower is better)
Translates to: SHWRFLNISGPGFWDLKTVPWSS*VGLCRV
Trigger: CACTCTACAGAGGCCCACCAAAGAGCTCCACGGGAC...GGTCTTCAGGTCCCAGAATCCTGGGCCTGAAATGTTGAGGAAACGCCAGTGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp ACTCCCCTTAAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGTGATGGCCTGCAGCTaGGGCACAATGGATGTCCCG +
Preference number: 5 (lower is better)
Translates to: TPLKRHQVSELLGYTQAWVMACS*GTMDVP
Trigger: CGGGACATCCATTGTGCCCAAGCTGCAGGCCATCAC...CCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTTAAGGGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCCTCAGAGCCTGCGCAGGGTCAGGGAGAGACTCTCCTTGGTGGGAAGGCAGGGTGGTCTGTCAATTTATaGCAACCTGCCATATTGAGC +
Preference number: 5 (lower is better)
Translates to: ASEPAQGQGETLLGGKAGWSVNL*QPAILS
Trigger: GCTCAATATGGCAGGTTGCAATAAATTGACAGACCA...CCCTGCCTTCCCACCAAGGAGAGTCTCTCCCTGACCCTGCGCAGGCTCTGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp CCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCGGGAGTTTCTCGTGATCTGTTaGCATCCTCGAAGGTCAATC +
Preference number: 5 (lower is better)
Translates to: PARPGVSRAVGSSCRSREFLVIC*HPRRSI
Trigger: GATTGACCTTCGAGGATGCAAACAGATCACGAGAAA...CTCCCGGCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCAACGGACACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCGAAGACCTTTCCACCTaGGTGGATGTGATACCAAAC +
Preference number: 5 (lower is better)
Translates to: ATDTMRRIWPWRQGCLPPEDLST*VDVIPN
Trigger: GTTTGGTATCACATCCACCAAGGTGGAAAGGTCTTC...GGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTGTCCGTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCTCAGACAGCTCCTTTTaGCCGCTGGGATTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSSDSSF*PLGLFS
Trigger: GGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGA...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCAACGGACACCATGAGGAGAATCTGGCCATGGAGGCAAGGCTGCCTTCCTCCCCATGTCAGCTGCTTTTaGGAGATGTTAGTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: ATDTMRRIWPWRQGCLPPHVSCF*EMLVQL
Trigger: CAGCTGGACTAACATCTCCAAAAAGCAGCTGACATG...GGGAGGAAGGCAGCCTTGCCTCCATGGCCAGATTCTCCTCATGGTGTCCGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TGGTCTTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAAAATCCTGGCAGCCTATaGACCAGCCATGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: WSWLLGPRGQRCPGCSQENPGSL*TSHVSC
Trigger: GCAGCTGACATGGCTGGTCAATAGGCTGCCAGGATT...TTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAAGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CAA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGAATCCTGGCAGCCTATaGACCAGCCATGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: RESLTEERHATDTMRRIWNPGSL*TSHVSC
Trigger: GCAGCTGACATGGCTGGTCAATAGGCTGCCAGGATT...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS TCA 90 bp GCAGCAGGCCTTACAGGTGTTAAGCGTGGAGCTGGCTTCATGGTGTaGGGCTTTGTGATGGGAATTGTAGGAACCCTCACCTTTGGCCTG +
Preference number: 5 (lower is better)
Translates to: AAGLTGVKRGAGFMV*GFVMGIVGTLTFGL
Trigger: CAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS-3UTR CAA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGAGGGGCCGTAAGACTTaGGCTTGTACAGCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQRGRKT*ACTASS
Trigger: TGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCT...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCTACGATCCCCGGATCTaGGCTTTCTCAACTTCAGAC +
Preference number: 5 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSYDPRI*AFSTSD
Trigger: GTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTA...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCGGGTTAGGGCGAAGGTaGGCAGAGGAGGCCGTGATG +
Preference number: 5 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAGLGRR*AEEAVM
Trigger: CATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCC...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACGAAGACCTTTCCACCTaGGTGGATGTGATACCAAAC +
Preference number: 5 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNEDLST*VDVIPN
Trigger: GTTTGGTATCACATCCACCAAGGTGGAAAGGTCTTC...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp CGGGAGAGTTTAACGGAGGAGAGACACGCAACGGACACCATGAGGAGAATCTGGGACACTCCCAGCAATTaGGCAATTCCTCGTTCAGCA +
Preference number: 5 (lower is better)
Translates to: RESLTEERHATDTMRRIWDTPSN*AIPRSA
Trigger: TGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTC...CCAGATTCTCCTCATGGTGTCCGTTGCGTGTCTCTCCTCCGTTAAACTCTCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGAGCAAAGCTTCAGACAACTCACAGCACCATTGAGACCTGCCAGGCCTGGTGTGACACTCCCAGCAATTaGGCAATTCCTCGTTCAGCA +
Preference number: 5 (lower is better)
Translates to: GAKLQTTHSTIETCQAWCDTPSN*AIPRSA
Trigger: TGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTC...ACACCAGGCCTGGCAGGTCTCAATGGTGCTGTGAGTTGTCTGAAGCTTTGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp CTGATCTGTAAGGTGACTGCAGTGACTGAGGTCAAGTCGAGACAAAAGGGGCATAGCAACTGCCGCCGTTaGAAGCGTTCATCACGGCTG +
Preference number: 5 (lower is better)
Translates to: LICKVTAVTEVKSRQKGHSNCRR*KRSSRL
Trigger: CAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCT...ATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235335.2
CDS-3UTR CAA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGTTTTTGCCGCTGGGATaGTTCTCCTTTTCCCGTACC +
Preference number: 5 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRFLPLG*FSFSRT
Trigger: GGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAA...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TTGGTTATTGGGGCCAAGAGGTCAGAGATGCCCAGGCTGTTCCCAGGAACTGCTTACGATCCCCGGATCTaGGCTTTCTCAACTTCAGAC +
Preference number: 5 (lower is better)
Translates to: LVIGAKRSEMPRLFPGTAYDPRI*AFSTSD
Trigger: GTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTA...AGCAGTTCCTGGGAACAGCCTGGGCATCTCTGACCTCTTGGCCCCAATAACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CAA 90 bp TTGAGACCTGCCAGGCCTGGTGTTTCTAGGGCTGTTGGCTCCTCCTGCAGAAGCCAGCAAGTCCCGAATTaGAGGGTCTTTAATTCCTAC +
Preference number: 5 (lower is better)
Translates to: LRPARPGVSRAVGSSCRSQQVPN*RVFNSY
Trigger: GTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTG...GCTTCTGCAGGAGGAGCCAACAGCCCTAGAAACACCAGGCCTGGCAGGTCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCCATATTGAGCTCTGTAAGGGAGTATCGAGTGGAAGACCCGACAGCAGTTAGTCTACCTGGCAGCCTATaGACCAGCCATGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: AILSSVREYRVEDPTAVSLPGSL*TSHVSC
Trigger: GCAGCTGACATGGCTGGTCAATAGGCTGCCAGGTAG...ACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS-3UTR CAA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGTTTCTTTCAAGTGCCTaGGCCACATGTTATCTACCC +
Preference number: 5 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQFLSSA*ATCYLP
Trigger: GGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAA...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGGTGGGGACACACTTCTaGTGCAGTGGCAGTGACTCT +
Preference number: 5 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRVGTHF*CSGSDS
Trigger: AGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCAC...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGCCAGTGAGGGCTAACTaGGGATCGCTACTGGCAAGT +
Preference number: 5 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRPVRAN*GSLLAS
Trigger: ACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGG...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GTCCTAAAGAAAAGACCCAGCAAGGGCGTCAGTCCATCTGCCACCACCCTGAGCGACTCCACATTCTCCTaGCACACAAGCTTTGCATTT +
Preference number: 5 (lower is better)
Translates to: VLKKRPSKGVSPSATTLSDSTFS*HTSFAF
Trigger: AAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTC...GCTCAGGGTGGTGGCAGATGGACTGACGCCCTTGCTGGGTCTTTTCTTTAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GTAGTGGCTTACATTTGTAACTCCAGTTCCAGGGGTCTGATTCCTCTTTGGCCTTCGGAGGACACAGGATaGCTTCATGCGTCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: VVAYICNSSSRGLIPLWPSEDTG*LHASRS
Trigger: GGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGA...AGGCCAAAGAGGAATCAGACCCCTGGAACTGGAGTTACAAATGTAAGCCACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CAA 90 bp GTAGTGGCTTACATTTGTAACTCCAGTTCCAGGGGTCTGATTCCTCTTTGGCCTTTCCGCTTCTGGGCTTaGTCCGAGCTGTCTTCCTGG +
Preference number: 5 (lower is better)
Translates to: VVAYICNSSSRGLIPLWPFRFWA*SELSSW
Trigger: CCAGGAAGACAGCTCGGACAAAGCCCAGAAGCGGAA...AGGCCAAAGAGGAATCAGACCCCTGGAACTGGAGTTACAAATGTAAGCCACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CAA 90 bp CAGAACCAGGCACTGCTAGGGACTATGGGTGAGAAGGTAGGGTTCTTGGCCCAGTTGCAACCTGCCATATaGAGCTCTGTAAGGGAGTAT +
Preference number: 5 (lower is better)
Translates to: QNQALLGTMGEKVGFLAQLQPAI*SSVREY
Trigger: ATACTCCCTTACAGAGCTCAATATGGCAGGTTGCAA...CTGGGCCAAGAACCCTACCTTCTCACCCATAGTCCCTAGCAGTGCCTGGTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 90 bp CTACTGGCAAGTTCTTCCAGCAAAATCTTGCATTTCTTGTTGCTCTaGAGCTGCGGAGGCTCTTGGGTGAAGTTTCCCCAGCGCCTTTGT +
Preference number: 5 (lower is better)
Translates to: LLASSSSKILHFLLL*SCGGSWVKFPQRLC
Trigger: ACAAAGGCGCTGGGGAAACTTCACCCAAGAGCCTCCGCAGCTCCAGAGCAACAAGAAATGCAAGATTTTGCTGGAAGAACTTGCCAGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176653.2
CDS-3UTR CAA 90 bp CAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATTTGGGGATCCCAAACTaGGCCATTGTGGGATCCCCG +
Preference number: 5 (lower is better)
Translates to: QLVGSNGWGVLMMPVLEYLGIPN*AIVGSP
Trigger: CGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAA...ATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTAGTGGGGACACACTTCTaGTGCAGTGGCAGTGACTCT +
Preference number: 5 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVVGTHF*CSGSDS
Trigger: AGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCAC...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCCAGTGAGGGCTAACTaGGGATCGCTACTGGCAAGT +
Preference number: 5 (lower is better)
Translates to: VGGQQWVGSINDACLRICPVRAN*GSLLAS
Trigger: ACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGG...GCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GATGGGGAGCAGAGTGCAAATTTGCATGTATCACTGACAAACTCTGGCCACAGGTCAGACAGCTCCTTTTaGCCGCTGGGATTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: DGEQSANLHVSLTNSGHRSDSSF*PLGLFS
Trigger: GGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGA...CCTGTGGCCAGAGTTTGTCAGTGATACATGCAAATTTGCACTCTGCTCCCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGAGCAGGCAATAACCTTGGTGTCCACCAACCTCTCTGCCCCACCTGTGGGAGACATTTATACCATGTCTaGCACACTCGCATACATTCA +
Preference number: 5 (lower is better)
Translates to: GAGNNLGVHQPLCPTCGRHLYHV*HTRIHS
Trigger: TGAATGTATGCGAGTGTGCAAGACATGGTATAAATG...TCTCCCACAGGTGGGGCAGAGAGGTTGGTGGACACCAAGGTTATTGCCTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCAGGGGCCGTAAGACTTaGGCTTGTACAGCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKARGRKT*ACTASS
Trigger: TGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCT...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTGTGATGGCCTGCAGCTaGGGCACAATGGATGTCCCG +
Preference number: 5 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSVMACS*GTMDVP
Trigger: CGGGACATCCATTGTGCCCAAGCTGCAGGCCATCAC...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TGTTGGCTCCTCCTGCAGAAGCCGGGAGAGTTTAACGGAGGAGAGACACGCAACCATTTATACCATGTCTaGCACACTCGCATACATTCA +
Preference number: 5 (lower is better)
Translates to: CWLLLQKPGEFNGGETRNHLYHV*HTRIHS
Trigger: TGAATGTATGCGAGTGTGCAAGACATGGTATAAATG...GTTGCGTGTCTCTCCTCCGTTAAACTCTCCCGGCTTCTGCAGGAGGAGCCAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAACATGTCAGCTGCTTTTaGGAGATGTTAGTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLEHVSCF*EMLVQL
Trigger: CAGCTGGACTAACATCTCCAAAAAGCAGCTGACATG...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGTGGTCTGTCAATTTATaGCAACCTGCCATATTGAGC +
Preference number: 5 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRWSVNL*QPAILS
Trigger: GCTCAATATGGCAGGTTGCAATAAATTGACAGACCA...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp AAGAGCACTGGCTCTTCCGAAGGTCCTCAGTTCAATTCCCAGCAACCACGTGGTTTTCTCGTGATCTGTTaGCATCCTCGAAGGTCAATC +
Preference number: 5 (lower is better)
Translates to: KSTGSSEGPQFNSQQPRGFLVIC*HPRRSI
Trigger: GATTGACCTTCGAGGATGCAAACAGATCACGAGAAA...ACCACGTGGTTGCTGGGAATTGAACTGAGGACCTTCGGAAGAGCCAGTGCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CAA 90 bp AAAAGGCACCAGGTCAGTGAGCTGCTAGGTTATACACAGGCCTGGGCTCAGAGGTTGGCATTATATTTGTaGGTTTGGAGCTTCTCTTCC +
Preference number: 5 (lower is better)
Translates to: KRHQVSELLGYTQAWAQRLALYL*VWSFSS
Trigger: GGAAGAGAAGCTCCAAACCAACAAATATAATGCCAA...CCTCTGAGCCCAGGCCTGTGTATAACCTAGCAGCTCACTGACCTGGTGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp AACAGGGGTGGCAAGGATGAGAACAGAGGCAAAGCTGACAATCCCCTCTTCTCTTTTCTTTCAAGTGCCTaGGCCACATGTTATCTACCC +
Preference number: 5 (lower is better)
Translates to: NRGGKDENRGKADNPLFSFLSSA*ATCYLP
Trigger: GGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAA...AGAGAAGAGGGGATTGTCAGCTTTGCCTCTGTTCTCATCCTTGCCACCCCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS-3UTR CAA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTAGACTCCACATTCTCCTaGCACACAAGCTTTGCATTT +
Preference number: 5 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLDSTFS*HTSFAF
Trigger: AAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTC...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TGTTCCGGAGTTTGCTTCGATTGTCTTGACCTGGCTTATCTGTGGGTGGAGTCACATGTCAGCTGCTTTTaGGAGATGTTAGTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: CSGVCFDCLDLAYLWVESHVSCF*EMLVQL
Trigger: CAGCTGGACTAACATCTCCAAAAAGCAGCTGACATG...TGACTCCACCCACAGATAAGCCAGGTCAAGACAATCGAAGCAAACTCCGGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS CCA 90 bp CATGGTGTGAGGCTTTGTGATGGGAATTGTAGGAACCCTCACCTTTaGCCTGGTAGGGAATTTAAGCTTATCCCTTTTTGGCCACTGTAC +
Preference number: 5 (lower is better)
Translates to: HGVRLCDGNCRNPHL*PGREFKLIPFWPLY
Trigger: GTACAGTGGCCAAAAAGGGATAAGCTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS-3UTR CAA 90 bp CAACCAGTCTTCTGTTTCCCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACATAGTATCGTGTCCATaGTGCCATGGTCATTTCAAT +
Preference number: 5 (lower is better)
Translates to: QPVFCFPHLEKHAAPSEDIVSCP*CHGHFN
Trigger: ATTGAAATGACCATGGCACAATGGACACGATACTAT...GTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGGGAAACAGAAGACTGGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp TTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCAAGTTTTCTTCAGACTaGGAAGACTTCGGCAGGCTT +
Preference number: 5 (lower is better)
Translates to: LVGSNGWGVLMMPVLEYAKFSSD*EDFGRL
Trigger: AAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTT...GGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATACAGCAAGTCCCGAATTaGAGGGTCTTTAATTCCTAC +
Preference number: 5 (lower is better)
Translates to: AVGGQQWVGSINDACLRIQQVPN*RVFNSY
Trigger: GTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTG...TATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 90 bp ATCAGAGCATCTTCGTCTTCTATTCCTGTGGGGACACACTTCTTGTaGAGTGGCAGTGACTCTAACTTATCTACAAGACATCGAAGACCT +
Preference number: 5 (lower is better)
Translates to: IRASSSSIPVGTHFL*SGSDSNLSTRHRRP
Trigger: AGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS-3UTR CAA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCTTGGCATTATATTTGTaGGTTTGGAGCTTCTCTTCC +
Preference number: 5 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKALALYL*VWSFSS
Trigger: GGAAGAGAAGCTCCAAACCAACAAATATAATGCCAA...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGGCAGTTGGTGGGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATCTCTAAGATGGCATTaGTTGATTCTGTCTGACTTT +
Preference number: 5 (lower is better)
Translates to: GQLVGSNGWGVLMMPVLESLRWH*LILSDF
Trigger: AAAGTCAGACAGAATCAACAAATGCCATCTTAGAGA...TTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCCCACCAACTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp ACACACTTCCAAGGCTGCAGGCAGAGGGTAGGTTTTCAATCAGGACTCCCCTTATCTCTAAGATGGCATTaGTTGATTCTGTCTGACTTT +
Preference number: 5 (lower is better)
Translates to: THFQGCRQRVGFQSGLPLSLRWH*LILSDF
Trigger: AAAGTCAGACAGAATCAACAAATGCCATCTTAGAGA...TAAGGGGAGTCCTGATTGAAAACCTACCCTCTGCCTGCAGCCTTGGAAGTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTTTTTTGCCGCTGGGATaGTTCTCCTTTTCCCGTACC +
Preference number: 5 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSFLPLG*FSFSRT
Trigger: GGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAA...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp CCCCACCTGGAGAAACATGCTGCTCCTTCTGAGGACACAAATTCTAGAAAAGCCATTATATTTGTTGGTTaGGAGCTTCTCTTCCAAGTC +
Preference number: 5 (lower is better)
Translates to: PHLEKHAAPSEDTNSRKAIIFVG*ELLFQV
Trigger: GACTTGGAAGAGAAGCTCCAAACCAACAAATATAAT...GGCTTTTCTAGAATTTGTGTCCTCAGAAGGAGCAGCATGTTTCTCCAGGTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGCAGCAATGGGTGGGGAGTATTAATGATGCCTGTCTTAGAATATGCCTGGGTACTAAGATGGCATTTGTaGATTCTGTCTGACTTTCTT +
Preference number: 5 (lower is better)
Translates to: GSNGWGVLMMPVLEYAWVLRWHL*ILSDFL
Trigger: AAGAAAGTCAGACAGAATCAACAAATGCCATCTTAG...TACCCAGGCATATTCTAAGACAGGCATCATTAATACTCCCCACCCATTGCTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS-3UTR CAA 90 bp GGGCAGGCACTTCCTAGTTTTAGCAAGACATCAGCATGTCTATATGACCTTCTGCTAAGATGGCATTTGTaGATTCTGTCTGACTTTCTT +
Preference number: 5 (lower is better)
Translates to: GQALPSFSKTSACLYDLLLRWHL*ILSDFL
Trigger: AAGAAAGTCAGACAGAATCAACAAATGCCATCTTAG...CAGAAGGTCATATAGACATGCTGATGTCTTGCTAAAACTAGGAAGTGCCTGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047898.14
CDS TCA 90 bp GACTCCAACTCATTTAACTCCATATCCATGCTAAGGGATTCTTTCTaGAAATCCTTAGTTAGGTGGGATCGGTTGGTTATGCAGTATACA +
Preference number: 5 (lower is better)
Translates to: DSNSFNSISMLRDSF*KSLVRWDRLVMQYT
Trigger: TGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGGATATGGAGTTAAATGAGTTGGAGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS-3UTR CAA 90 bp ATTGGAAGAAACAATGCCATCCCTTGCCAGAAACCCAGTTTTCCTGGAAAAAGTATTATATTTGTTGGTTaGGAGCTTCTCTTCCAAGTC +
Preference number: 5 (lower is better)
Translates to: IGRNNAIPCQKPSFPGKSIIFVG*ELLFQV
Trigger: GACTTGGAAGAGAAGCTCCAAACCAACAAATATAAT...ACTTTTTCCAGGAAAACTGGGTTTCTGGCAAGGGATGGCATTGTTTCTTCCAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CAA 72 bp CAGTGCTGCATTAGCACGCGGGGGTTAGGGCGAAGGTaGGCAGAGGAGGCCGTGATGGCCTGCAGCTTGGGC +
Preference number: 6 (lower is better)
Translates to: QCCISTRGLGRR*AEEAVMACSLG
Trigger: GCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CAA 90 bp ACCATGGTGCGCTCGGTGGCTTGTAGCCGCAGCAACTGCCGCCGTTaGAAGCGTTCATCACGGCTGGCACTGTGGTGGTCGCTGGGGCCA +
Preference number: 6 (lower is better)
Translates to: TMVRSVACSRSNCRR*KRSSRLALWWSLGP
Trigger: TGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CAA 90 bp CGGGCTGGGCAGTGCTGCATTAGCACGCGGGGGTTAGGGCGAAGGTaGGCAGAGGAGGCCGTGATGGCCTGCAGCTTGGGCACAATGGAT +
Preference number: 6 (lower is better)
Translates to: RAGQCCISTRGLGRR*AEEAVMACSLGTMD
Trigger: ATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS TCA 72 bp GGGTCGTGGATGAGCTGCAGCATGGAAGTAGGTGAGTaGGGCGGGGGTGTGAGAGGCTCCTCGCAGCTCCTC +
Preference number: 6 (lower is better)
Translates to: GSWMSCSMEVGE*GGGVRGSSQLL
Trigger: GAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS TCA 72 bp GCTCGGTGGCTTGTAGCCGCAGCAACTGCCGCCGTTTaGAGCGTTCATCACGGCTGGCACTGTGGTGGTCGC +
Preference number: 6 (lower is better)
Translates to: ARWLVAAATAAV*SVHHGWHCGGR
Trigger: GCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS CAA 72 bp CGCTCGGTGGCTTGTAGCCGCAGCAACTGCCGCCGTTaGAAGCGTTCATCACGGCTGGCACTGTGGTGGTCG +
Preference number: 6 (lower is better)
Translates to: RSVACSRSNCRR*KRSSRLALWWS
Trigger: CGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS CAA 90 bp GGGTTAGGGCGAAGGTTGGCAGAGGAGGCCGTGATGGCCTGCAGCTaGGGCACAATGGATGTCCCGTGGAGCTCTTTGGTGGGCCTCTGT +
Preference number: 6 (lower is better)
Translates to: GLGRRLAEEAVMACS*GTMDVPWSSLVGLC
Trigger: ACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS TCA 72 bp GCATTTCCTGCACCGCACTCTTCTCCGCCTGGCTCCTaGCACAATGGGGGAGGCTGCAGCAGGCCTTACAGG +
Preference number: 6 (lower is better)
Translates to: AFPAPHSSPPGS*HNGGGCSRPYR
Trigger: CCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS GCA 72 bp ACCATGGTGCGCTCGGTGGCTTGTAGCCGCAGCAACTaGCGCCGTTTGAAGCGTTCATCACGGCTGGCACTG +
Preference number: 6 (lower is better)
Translates to: TMVRSVACSRSN*RRLKRSSRLAL
Trigger: CAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000235335.2
CDS GCA 72 bp TGCCGCTGGGATTGTTCTCCTTTTCCCGTACCATGGTaGGCTCGGTGGCTTGTAGCCGCAGCAACTGCCGCC +
Preference number: 6 (lower is better)
Translates to: CRWDCSPFPVPW*ARWLVAAATAA
Trigger: GGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 72 bp TTAGGGCGAAGGTTGGCAGAGGAGGCCGTGATGGCCTaGAGCTTGGGCACAATGGATGTCCCGTGGAGCTCT +
Preference number: 6 (lower is better)
Translates to: LGRRLAEEAVMA*SLGTMDVPWSS
Trigger: AGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 72 bp TGCACCGCACTCTTCTCCGCCTGGCTCCTGACACAATaGGGGAGGCTGCAGCAGGCCTTACAGGTGTTAAGC +
Preference number: 6 (lower is better)
Translates to: CTALFSAWLLTQ*GRLQQALQVLS
Trigger: GCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CCA 72 bp AAGCTTTGCATTTCCTGCACCGCACTCTTCTCCGCCTaGCTCCTGACACAATGGGGGAGGCTGCAGCAGGCC +
Preference number: 6 (lower is better)
Translates to: KLCISCTALFSA*LLTQWGRLQQA
Trigger: GGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CAA 72 bp CGAAGGTTGGCAGAGGAGGCCGTGATGGCCTGCAGCTaGGGCACAATGGATGTCCCGTGGAGCTCTTTGGTG +
Preference number: 6 (lower is better)
Translates to: RRLAEEAVMACS*GTMDVPWSSLV
Trigger: CACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CAA 90 bp GTGATGGCCTGCAGCTTGGGCACAATGGATGTCCCGTGGAGCTCTTaGGTGGGCCTCTGTAGAGTGACAGTGAGGTACGATCCCCGGATC +
Preference number: 6 (lower is better)
Translates to: VMACSLGTMDVPWSS*VGLCRVTVRYDPRI
Trigger: GATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 72 bp TTTTGCCGCTGGGATTGTTCTCCTTTTCCCGTACCATaGTGCGCTCGGTGGCTTGTAGCCGCAGCAACTGCC +
Preference number: 6 (lower is better)
Translates to: FCRWDCSPFPVP*CARWLVAAATA
Trigger: GGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 72 bp GTGATGGCCTGCAGCTTGGGCACAATGGATGTCCCGTaGAGCTCTTTGGTGGGCCTCTGTAGAGTGACAGTG +
Preference number: 6 (lower is better)
Translates to: VMACSLGTMDVP*SSLVGLCRVTV
Trigger: CACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CAA 72 bp TGCAGCTTGGGCACAATGGATGTCCCGTGGAGCTCTTaGGTGGGCCTCTGTAGAGTGACAGTGAGGTACGAT +
Preference number: 6 (lower is better)
Translates to: CSLGTMDVPWSS*VGLCRVTVRYD
Trigger: ATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CCA 72 bp TTAGGGCTACATTGGGGATCCCAAACTTGGCCATTGTaGGATCCCCGGGTAGAGTCTGAGGATGAGTCTCCA +
Preference number: 6 (lower is better)
Translates to: LGLHWGSQTWPL*DPRVESEDESP
Trigger: TGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS CAA 90 bp TTGGTGGGCCTCTGTAGAGTGACAGTGAGGTACGATCCCCGGATCTaGGCTTTCTCAACTTCAGACAGCTCCTTTTTGCCGCTGGGATTG +
Preference number: 6 (lower is better)
Translates to: LVGLCRVTVRYDPRI*AFSTSDSSFLPLGL
Trigger: CAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 72 bp TCCAGCAAAATCTTGCATTTCTTGTTGCTCTGGAGCTaGGGAGGCTCTTGGGTGAAGTTTCCCCAGCGCCTT +
Preference number: 6 (lower is better)
Translates to: SSKILHFLLLWS*GGSWVKFPQRL
Trigger: AAGGCGCTGGGGAAACTTCACCCAAGAGCCTCCGCAGCTCCAGAGCAACAAGAAATGCAAGATTTTGCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176653.2
CDS CCA 72 bp GTGAGATGCACTTGCCTATCCTTTTTAGGGCTACATTaGGGATCCCAAACTTGGCCATTGTGGGATCCCCGG +
Preference number: 6 (lower is better)
Translates to: VRCTCLSFLGLH*GSQTWPLWDPR
Trigger: CCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS CAA 72 bp TTCTCAACTTCAGACAGCTCCTTTTTGCCGCTGGGATaGTTCTCCTTTTCCCGTACCATGGTGCGCTCGGTG +
Preference number: 6 (lower is better)
Translates to: FSTSDSSFLPLG*FSFSRTMVRSV
Trigger: CACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS CAA 90 bp AGGTTCACTCCATTAGCAACAGGGCTGGTAAGCACAGATCGCTTATaGTTCATGCGTCGGGCTTCTCTGTCCACCCCTTCCTCATCACCA +
Preference number: 6 (lower is better)
Translates to: RFTPLATGLVSTDRL*FMRRASLSTPSSSP
Trigger: TGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS CAA 90 bp ATCTTGGCTTTCTCAACTTCAGACAGCTCCTTTTTGCCGCTGGGATaGTTCTCCTTTTCCCGTACCATGGTGCGCTCGGTGGCTTGTAGC +
Preference number: 6 (lower is better)
Translates to: ILAFSTSDSSFLPLG*FSFSRTMVRSVACS
Trigger: GCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 72 bp TCTACCCAGTCAATGAAATCCACCGTGGAAGGCCGCTaGACCATATTCTCAAGCCTGGTGTGGCTAAACTCT +
Preference number: 6 (lower is better)
Translates to: STQSMKSTVEGR*TIFSSLVWLNS
Trigger: AGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACGGTGGATTTCATTGACTGGGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
ENSMUST00000175959.2
CDS GCA 72 bp AGTCTGGGTGCTAAGCACTGTCGGAGGACACAGGATTaGTTCATGCGTCCAGGTCCACCAAATTTCTTCATG +
Preference number: 6 (lower is better)
Translates to: SLGAKHCRRTQD*FMRPGPPNFFM
Trigger: CATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCACCCAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CAA 72 bp GGCCACTGTACTATAGGGACTCCAGTGAGGGCTAACTaGGGATCGCTACTGGCAAGTTCTTCCAGCAAAATC +
Preference number: 6 (lower is better)
Translates to: GHCTIGTPVRAN*GSLLASSSSKI
Trigger: GATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CAA 72 bp AGAGGCTCCTCGCAGCTCCTCAGGGGCCGTAAGACTTaGGCTTGTACAGCTTCTTCATCACTCTCTTCTATT +
Preference number: 6 (lower is better)
Translates to: RGSSQLLRGRKT*ACTASSSLSSI
Trigger: AATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS TCA 72 bp CAGCTCCAGGTTGTGGGCTTTCCACCTTGGTGGATGTaGTACCAAACAGAAGTACCTCCAAAATCCACATGG +
Preference number: 6 (lower is better)
Translates to: QLQVVGFPPWWM*YQTEVPPKSTW
Trigger: CCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAGCCCACAACCTGGAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175959.2
CDS TCA 72 bp GGGATGAGCCAGAAGACCTTTCCACCTTGGTGGATGTaGTACCAAACAGAAGTACCTCCAAAATCCACATGG +
Preference number: 6 (lower is better)
Translates to: GMSQKTFPPWWM*YQTEVPPKSTW
Trigger: CCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAGGTCTTCTGGCTCATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS CAA 72 bp CTGAGGATGAGTCTCCAGACAAAGTTTTCTTCAGACTaGGAAGACTTCGGCAGGCTTTGCCAAGTCCATCGT +
Preference number: 6 (lower is better)
Translates to: LRMSLQTKFSSD*EDFGRLCQVHR
Trigger: ACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS CAA 90 bp TCCCTTTTTGGCCACTGTACTATAGGGACTCCAGTGAGGGCTAACTaGGGATCGCTACTGGCAAGTTCTTCCAGCAAAATCTTGCATTTC +
Preference number: 6 (lower is better)
Translates to: SLFGHCTIGTPVRAN*GSLLASSSSKILHF
Trigger: GAAATGCAAGATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176653.2
CDS CAA 90 bp GTGAAGTCTGGATCCGGCATCTTTATTCCAAGTCCATCAGAATTCTaGAAAATGAGAGGGTCTCTCAAGCCACCCCGCTGGATATACTCT +
Preference number: 6 (lower is better)
Translates to: VKSGSGIFIPSPSEF*KMRGSLKPPRWIYS
Trigger: AGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAAGATGCCGGATCCAGACTTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
ENSMUST00000175959.2
CDS CAA 90 bp TCCCTTTTTGGCCACTGTACTATAGGGACTCCAGTGAGGGCTAACTaGGGATCGCTACTGGCAAGTTCTTCCAGCAAAATCTTTACATCA +
Preference number: 6 (lower is better)
Translates to: SLFGHCTIGTPVRAN*GSLLASSSSKIFTS
Trigger: TGATGTAAAGATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
CDS GCA 72 bp CTCTTCCTCTGGAGTCTCATAGTATCGTGTCCATTGTaGCATGGTCATTTCAATCCCCTTCTGTGTGTTCAC +
Preference number: 6 (lower is better)
Translates to: LFLWSLIVSCPL*HGHFNPLLCVH
Trigger: GTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
ENSMUST00000175959.2
CDS CAA 72 bp CTAGGAGGAGGTCTTTTAATCCTACCTGGCAGCCTATaGACCAGCCATGTCAGCTGCTTTTTGGAGATGTTA +
Preference number: 6 (lower is better)
Translates to: LGGGLLILPGSL*TSHVSCFLEML
Trigger: TAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAGGTAGGATTAAAAGACCTCCTCCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176532.2
CDS CAA 90 bp GCAATCAGAGCATCTTCGTCTTCTATTCCTGTGGGGACACACTTCTaGTGCAGTGGCAGTGACTCTAACTTATCTACAAGACATCGAAGA +
Preference number: 6 (lower is better)
Translates to: AIRASSSSIPVGTHF*CSGSDSNLSTRHRR
Trigger: TCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS CCA 72 bp AGGCTTTGTGATGGGAATTGTAGGAACCCTCACCTTTaGCCTGGTAGGGAATTTAAGCTTATCCCTTTTTGG +
Preference number: 6 (lower is better)
Translates to: RLCDGNCRNPHL*PGREFKLIPFW
Trigger: CCAAAAAGGGATAAGCTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CAA 72 bp GCATCTTCGTCTTCTATTCCTGTGGGGACACACTTCTaGTGCAGTGGCAGTGACTCTAACTTATCTACAAGA +
Preference number: 6 (lower is better)
Translates to: ASSSSIPVGTHF*CSGSDSNLSTR
Trigger: TCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
CDS TCA 72 bp CAGGATGAACTATCTCGTTGCAGATGCAGCATTCCATaGGTTTCTTTTCAAAGTCCTGGGTCTCTTCATTCT +
Preference number: 6 (lower is better)
Translates to: QDELSRCRCSIP*VSFQSPGSLHS
Trigger: AGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000176653.2
CDS CCA 72 bp GCTGATAACATTATAGAGTTTTTCTCGCTCTTCCTCTaGAGTCTCATAGTATCGTGTCCATTGTGCCATGGT +
Preference number: 6 (lower is better)
Translates to: ADNIIEFFSLFL*SLIVSCPLCHG
Trigger: ACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9
ENSMUST00000175959.2
CDS CCA 72 bp TTATCTACAAGACATCGAAGACCTTCAAGTTCAAAATaGGTGAGATGCACTTGCCTATCCTTTTTAGGGCTA +
Preference number: 6 (lower is better)
Translates to: LSTRHRRPSSSK*VRCTCLSFLGL
Trigger: TAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047898.14
ENSMUST00000075856.11
ENSMUST00000116571.9