Pregenerated sensors for KDELR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010830Ensembl transcript IDs: ENSMUST00000010974.9
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTATCTACTGCTTCTCTTCACTTGGCACTTGTAGGGCACCATCCTTaGGCAGATGGGCTAGGTATCCCATTCTATCCATGGTGGATTAGG | + |
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Preference number: 1 (lower is better) Translates to: VSTASLHLALVGHHP*ADGLGIPFYPWWIR Trigger: CCTAATCCACCATGGATAGAATGGGATACCTAGCCCATCTGCCCAAGGATGGTGCCCTACAAGTGCCAAGTGAAGAGAAGCAGTAGATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 90 bp | GGAAGGCTACATTGGTGGTTCTTAGCACAGAATGGATTTACACAGTaGCCATGGTGTCCATCTCAGCTAACAAGTGAGCTAAGCAGTCCT | + |
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Preference number: 1 (lower is better) Translates to: GRLHWWFLAQNGFTQ*PWCPSQLTSELSSP Trigger: AGGACTGCTTAGCTCACTTGTTAGCTGAGATGGACACCATGGCCACTGTGTAAATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 90 bp | CTACATTGGTGGTTCTTAGCACAGAATGGATTTACACAGTGGCCATaGTGTCCATCTCAGCTAACAAGTGAGCTAAGCAGTCCTAAGCAC | + |
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Preference number: 1 (lower is better) Translates to: LHWWFLAQNGFTQWP*CPSQLTSELSSPKH Trigger: GTGCTTAGGACTGCTTAGCTCACTTGTTAGCTGAGATGGACACCATGGCCACTGTGTAAATCCATTCTGTGCTAAGAACCACCAATGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 90 bp | TTAAGCAGGGTGAGTGTATTAGGCATTCTATTTAGCACCTCAGGCTaGGAGGGGAAGGCTACATTGGTGGTTCTTAGCACAGAATGGATT | + |
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Preference number: 1 (lower is better) Translates to: LSRVSVLGILFSTSG*EGKATLVVLSTEWI Trigger: AATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAATGCCTAATACACTCACCCTGCTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR TCA 90 bp | CAAATTCACACCAGTCACTCTAACATGAAGTCCCAAGTCTTGGCTTaGAGTCATGAAGCAGTGATCCGGATGGTTTGCTTTAGCTGCCAT | + |
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Preference number: 1 (lower is better) Translates to: QIHTSHSNMKSQVLA*SHEAVIRMVCFSCH Trigger: ATGGCAGCTAAAGCAAACCATCCGGATCACTGCTTCATGACTTCAAGCCAAGACTTGGGACTTCATGTTAGAGTGACTGGTGTGAATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CAA 90 bp | CAAGGAGTTGAGCCACTCACGGAGGTATCTACTGCTTCTCTTCACTaGGCACTTGTAGGGCACCATCCTTGGGCAGATGGGCTAGGTATC | + |
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Preference number: 2 (lower is better) Translates to: QGVEPLTEVSTASLH*ALVGHHPWADGLGI Trigger: GATACCTAGCCCATCTGCCCAAGGATGGTGCCCTACAAGTGCCAAGTGAAGAGAAGCAGTAGATACCTCCGTGAGTGGCTCAACTCCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR GCA 90 bp | TGGTGTCCATCTCAGCTAACAAGTGAGCTAAGCAGTCCTAAGCACTTGGCAGAGGGACTGCTTACAGCTTaGAGGCCAGGTGGACATGTG | + |
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Preference number: 2 (lower is better) Translates to: WCPSQLTSELSSPKHLAEGLLTA*RPGGHV Trigger: CACATGTCCACCTGGCCTGCAAGCTGTAAGCAGTCC...CTCTGCCAAGTGCTTAGGACTGCTTAGCTCACTTGTTAGCTGAGATGGACACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR CCA 90 bp | ATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTACATTGGTGGTTCTTAGCGTAGGGCACCATCCTTaGGCAGATGGGCTAGGTATC | + |
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Preference number: 2 (lower is better) Translates to: ILFSTSGWEGKATLVVLSVGHHP*ADGLGI Trigger: GATACCTAGCCCATCTGCCCAAGGATGGTGCCCTAC...GCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR TCA 90 bp | ACCTCAGGCTGGGAGGGGAAGGCTACATTGGTGGTTCTTAGCACAGAATGGATTCCAGTCACTCTAACATaGAGTCCCAAGTCTTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: TSGWEGKATLVVLSTEWIPVTLT*SPKSWL Trigger: AAGCCAAGACTTGGGACTTCATGTTAGAGTGACTGG...AATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CAA 90 bp | TTAGGCATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTACATaGGTGGTTCTTAGCACAGAATGGATTTACACAGTGGCCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: LGILFSTSGWEGKAT*VVLSTEWIYTVAMV Trigger: CACCATGGCCACTGTGTAAATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAATGCCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR GCA 90 bp | GAATGGATCTTCCCAGCCCTGGGCATGAGTTGTATAGTCCTAAGGAAGCAAGGACACGGAGGTATCTACTaGTTCTCTTCACTTGGCACT | + |
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Preference number: 2 (lower is better) Translates to: EWIFPALGMSCIVLRKQGHGGIY*FSSLGT Trigger: AGTGCCAAGTGAAGAGAAGCAGTAGATACCTCCGTG...TCCTTGCTTCCTTAGGACTATACAACTCATGCCCAGGGCTGGGAAGATCCATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGTGAGTGTATTAGGCATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTAATGGATTTACACAGTaGCCATGGTGTCCATCTCAG | + |
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Preference number: 2 (lower is better) Translates to: RVSVLGILFSTSGWEGKANGFTQ*PWCPSQ Trigger: CTGAGATGGACACCATGGCCACTGTGTAAATCCATT...AGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAATGCCTAATACACTCACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR GCA 90 bp | CTAACAAGTGAGCTAAGCAGTCCTAAGCACTTGGCAGAGCTGGTTATTTGGACTCCCAAGATGGTGCTTTaGTCAAATTCACACCAGTCA | + |
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Preference number: 2 (lower is better) Translates to: LTSELSSPKHLAELVIWTPKMVL*SNSHQS Trigger: TGACTGGTGTGAATTTGAGCAAAGCACCATCTTGGG...AGTCCAAATAACCAGCTCTGCCAAGTGCTTAGGACTGCTTAGCTCACTTGTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR-3UTR GCA 90 bp | GAATGGATCTTCCCAGCCCTGGGCATGAGTTGTATAGTCCTAAGGAAGCAAGGATTTATCCCAAGATGGTaGTTTGCTCAAATTCACACC | + |
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Preference number: 2 (lower is better) Translates to: EWIFPALGMSCIVLRKQGFIPRW*FAQIHT Trigger: GGTGTGAATTTGAGCAAAGCACCATCTTGGGATAAA...TCCTTGCTTCCTTAGGACTATACAACTCATGCCCAGGGCTGGGAAGATCCATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 72 bp | CGAGTTCAGCACGCTGACCTAGGGAGGTTCTCTGAATaGATCTTCCCAGCCCTGGGCATGAGTTGTATAGTC | + |
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Preference number: 3 (lower is better) Translates to: RVQHADLGRFSE*IFPALGMSCIV Trigger: GACTATACAACTCATGCCCAGGGCTGGGAAGATCCATTCAGAGAACCTCCCTAGGTCAGCGTGCTGAACTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 72 bp | GCTTCTCTTCACTTGGCACTTGTAGGGCACCATCCTTaGGCAGATGGGCTAGGTATCCCATTCTATCCATGG | + |
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Preference number: 3 (lower is better) Translates to: ASLHLALVGHHP*ADGLGIPFYPW Trigger: CCATGGATAGAATGGGATACCTAGCCCATCTGCCCAAGGATGGTGCCCTACAAGTGCCAAGTGAAGAGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 72 bp | TTAGCACCTCAGGCTGGGAGGGGAAGGCTACATTGGTaGTTCTTAGCACAGAATGGATTTACACAGTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: LAPQAGRGRLHW*FLAQNGFTQWP Trigger: TGGCCACTGTGTAAATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 72 bp | TATTTAGCACCTCAGGCTGGGAGGGGAAGGCTACATTaGTGGTTCTTAGCACAGAATGGATTTACACAGTGG | + |
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Preference number: 3 (lower is better) Translates to: YLAPQAGRGRLH*WFLAQNGFTQW Trigger: CCACTGTGTAAATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 72 bp | GTGAGTGTATTAGGCATTCTATTTAGCACCTCAGGCTaGGAGGGGAAGGCTACATTGGTGGTTCTTAGCACA | + |
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Preference number: 3 (lower is better) Translates to: VSVLGILFSTSG*EGKATLVVLST Trigger: TGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAATGCCTAATACACTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR TCA 72 bp | ACCAGTCACTCTAACATGAAGTCCCAAGTCTTGGCTTaGAGTCATGAAGCAGTGATCCGGATGGTTTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: TSHSNMKSQVLA*SHEAVIRMVCF Trigger: AAAGCAAACCATCCGGATCACTGCTTCATGACTTCAAGCCAAGACTTGGGACTTCATGTTAGAGTGACTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR TCA 72 bp | GGTGCTTTGCTCAAATTCACACCAGTCACTCTAACATaGAGTCCCAAGTCTTGGCTTGAAGTCATGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: GALLKFTPVTLT*SPKSWLEVMKQ Trigger: CTGCTTCATGACTTCAAGCCAAGACTTGGGACTTCATGTTAGAGTGACTGGTGTGAATTTGAGCAAAGCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CCA 72 bp | TGGTTCTTAGCACAGAATGGATTTACACAGTGGCCATaGTGTCCATCTCAGCTAACAAGTGAGCTAAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: WFLAQNGFTQWP*CPSQLTSELSS Trigger: ACTGCTTAGCTCACTTGTTAGCTGAGATGGACACCATGGCCACTGTGTAAATCCATTCTGTGCTAAGAACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CAA 72 bp | GAGCCACTCACGGAGGTATCTACTGCTTCTCTTCACTaGGCACTTGTAGGGCACCATCCTTGGGCAGATGGG | + |
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Preference number: 4 (lower is better) Translates to: EPLTEVSTASLH*ALVGHHPWADG Trigger: CCCATCTGCCCAAGGATGGTGCCCTACAAGTGCCAAGTGAAGAGAAGCAGTAGATACCTCCGTGAGTGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR TCA 90 bp | ACCTCAGGCTGGGAGGGGAAGGCTACATTGGTGGTTCTTAGCACAGAATGGATTACAGGTAGTGAGTGGTaGTGGTCTCAGCCTCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: TSGWEGKATLVVLSTEWITGSEW*WSQPLR Trigger: CCGGAGAGGCTGAGACCATCACCACTCACTACCTGT...AATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR CCA 90 bp | TTAGCACCTCAGGCTGGGAGGGGAAGGCTACATTGGTGGTTCTTAGCACAGAATTGCCGGCGCAGCTCTTaGACCTCCAGATCTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: LAPQAGRGRLHWWFLAQNCRRSS*TSRSSP Trigger: TGGTGAAGATCTGGAGGTCCAAGAGCTGCGCCGGCA...ATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CAA 72 bp | CACTTGGCAGAGCTGGTTATTTGGACTGCTTACAGCTaGCAGGCCAGGTGGACATGTGGCTCGAGTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HLAELVIWTAYS*QARWTCGSSSA Trigger: TGCTGAACTCGAGCCACATGTCCACCTGGCCTGCAAGCTGTAAGCAGTCCAAATAACCAGCTCTGCCAAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR TCA 90 bp | ATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTACATTGGTGGTTCTTAGCCTGTCTGGTACCGCCTaGTCCAGTTGGCCAGATAGA | + |
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Preference number: 4 (lower is better) Translates to: ILFSTSGWEGKATLVVLSLSGTA*SSWPDR Trigger: TCTATCTGGCCAACTGGATCAGGCGGTACCAGACAG...GCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CAA 72 bp | TGCTTCTCTTCACTTGGCACTTGTAGGGCACCATCCTaGGGCAGATGGGCTAGGTATCCCATTCTATCCATG | + |
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Preference number: 4 (lower is better) Translates to: CFSSLGTCRAPS*GRWARYPILSM Trigger: CATGGATAGAATGGGATACCTAGCCCATCTGCCCAAGGATGGTGCCCTACAAGTGCCAAGTGAAGAGAAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR TCA 90 bp | ATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTACATTGGTGGTTCTTAGCAGATCATGTACACTGTaGCATAGGCACAGAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: ILFSTSGWEGKATLVVLSRSCTL*HRHRGG Trigger: TCCTCCTCTGTGCCTATGTCACAGTGTACATGATCT...GCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR CCA 90 bp | AGGGTGAGTGTATTAGGCATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTAAAGCGAAAAGAATCTaGCTCTTTCCAGAGATGCCG | + |
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Preference number: 4 (lower is better) Translates to: RVSVLGILFSTSGWEGKAKAKRI*LFPEMP Trigger: CGGCATCTCTGGAAAGAGCCAGATTCTTTTCGCTTT...AGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAATGCCTAATACACTCACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| 3UTR CAA 72 bp | CTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTACATaGGTGGTTCTTAGCACAGAATGGATTTACACAGTG | + |
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Preference number: 4 (lower is better) Translates to: LFSTSGWEGKAT*VVLSTEWIYTV Trigger: CACTGTGTAAATCCATTCTGTGCTAAGAACCACCAATGTAGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR CCA 90 bp | AGGGTGAGTGTATTAGGCATTCTATTTAGCACCTCAGGCTGGGAGGGGAAGGCTAGTCACAGTAAAAGATaGTTTGAACAACTCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: RVSVLGILFSTSGWEGKASHSKR*FEQLQT Trigger: TGTCTGGAGTTGTTCAAACCATCTTTTACTGTGACT...AGCCTTCCCCTCCCAGCCTGAGGTGCTAAATAGAATGCCTAATACACTCACCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR TCA 90 bp | TCTCAGCTAACAAGTGAGCTAAGCAGTCCTAAGCACTTGGCAGAGCTGGTTATTAACTCCAGACACTACTaGGATCTGGTCATAGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: SQLTSELSSPKHLAELVINSRHY*DLVIEV Trigger: AACTTCTATGACCAGATCTCAGTAGTGTCTGGAGTT...AATAACCAGCTCTGCCAAGTGCTTAGGACTGCTTAGCTCACTTGTTAGCTGAGA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR CAA 90 bp | GGCATGAGTTGTATAGTCCTAAGGAAGCAAGGAGTTGAGCCACTCACGGAGGTAATGCCGGCGCAGCTCTaGGACCTCCAGATCTTCACC | + |
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Preference number: 5 (lower is better) Translates to: GMSCIVLRKQGVEPLTEVMPAQL*DLQIFT Trigger: GGTGAAGATCTGGAGGTCCAAGAGCTGCGCCGGCAT...TACCTCCGTGAGTGGCTCAACTCCTTGCTTCCTTAGGACTATACAACTCATGCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS TCA 90 bp | ACACTACTGAGATCTGGTCATAGAAGTTCTCTGTCTGGTACCGCCTaGTCCAGTTGGCCAGATAGAGGAGCCGATAGAGCCCCAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: TLLRSGHRSSLSGTA*SSWPDRGADRAPGR Trigger: TCTTCCTGGGGCTCTATCGGCTCCTCTATCTGGCCAACTGGATCAGGCGGTACCAGACAGAGAACTTCTATGACCAGATCTCAGTAGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR CAA 90 bp | TCTCAGCTAACAAGTGAGCTAAGCAGTCCTAAGCACTTGGCAGAGCTGGTTATTTCAGCCTCTCCGGTCTaGCTGATCATGAAGAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SQLTSELSSPKHLAELVISASPV*LIMKSC Trigger: ACAGCTCTTCATGATCAGCAAGACCGGAGAGGCTGA...AATAACCAGCTCTGCCAAGTGCTTAGGACTGCTTAGCTCACTTGTTAGCTGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS-3UTR CAA 90 bp | ATCCATGGTGGATTAGGGAGGTGCTGCCGTTTATCCCAAGATGGTGCTTTGCTCACAGTAAAAGATGGTTaGAACAACTCCAGACACTAC | + |
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Preference number: 5 (lower is better) Translates to: IHGGLGRCCRLSQDGALLTVKDG*NNSRHY Trigger: GTAGTGTCTGGAGTTGTTCAAACCATCTTTTACTGT...GAGCAAAGCACCATCTTGGGATAAACGGCAGCACCTCCCTAATCCACCATGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS TCA 90 bp | CAATGTCAAACGTTTTCCGGAACTTCCAATAGATCATGTACACTGTaGCATAGGCACAGAGGAGGAAAACCACCTTCATCACTGTGTTGT | + |
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Preference number: 5 (lower is better) Translates to: QCQTFSGTSNRSCTL*HRHRGGKPPSSLCC Trigger: ACAACACAGTGATGAAGGTGGTTTTCCTCCTCTGTGCCTATGTCACAGTGTACATGATCTATTGGAAGTTCCGGAAAACGTTTGACATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS TCA 72 bp | AGATCTGGTCATAGAAGTTCTCTGTCTGGTACCGCCTaGTCCAGTTGGCCAGATAGAGGAGCCGATAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: RSGHRSSLSGTA*SSWPDRGADRA Trigger: GGCTCTATCGGCTCCTCTATCTGGCCAACTGGATCAGGCGGTACCAGACAGAGAACTTCTATGACCAGATCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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| CDS TCA 72 bp | ACAGTAAAAGATGGTTTGAACAACTCCAGACACTACTaGGATCTGGTCATAGAAGTTCTCTGTCTGGTACCG | + |
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Preference number: 6 (lower is better) Translates to: TVKDGLNNSRHY*DLVIEVLCLVP Trigger: CGGTACCAGACAGAGAACTTCTATGACCAGATCTCAGTAGTGTCTGGAGTTGTTCAAACCATCTTTTACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010974.9 |
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