Pregenerated sensors for KDELR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079111Ensembl transcript IDs: ENSMUST00000110731.4
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGCCCACTGAGCATCCCGAGCCTTCGCCTTCGCCTTCGCCATGGTaGGACCCTGTCCGAGCACCCCGAAGGGCAGAGGCTGCTGCTGGT | + |
|
Preference number: 1 (lower is better) Translates to: LPTEHPEPSPSPSPW*DPVRAPRRAEAAAG Trigger: ACCAGCAGCAGCCTCTGCCCTTCGGGGTGCTCGGACAGGGTCTCACCATGGCGAAGGCGAAGGCGAAGGCTCGGGATGCTCAGTGGGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 90 bp | TGCATCCTCGAAGAGCCACCAGTGAGTGGCTGCCGCAGAAGCCTCTaGTTCTGCCCACTGAGCATCCCGAGCCTTCGCCTTCGCCTTCGC | + |
|
Preference number: 1 (lower is better) Translates to: CILEEPPVSGCRRSL*FCPLSIPSLRLRLR Trigger: GCGAAGGCGAAGGCGAAGGCTCGGGATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 90 bp | GCCTCCTGGTCTCTTCCTCTGCATCCTCGAAGAGCCACCAGTGAGTaGCTGCCGCAGAAGCCTCTGCTTCTGCCCACTGAGCATCCCGAG | + |
|
Preference number: 1 (lower is better) Translates to: ASWSLPLHPRRATSE*LPQKPLLLPTEHPE Trigger: CTCGGGATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAAGAGACCAGGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 90 bp | CCTGGTCTCTTCCTCTGCATCCTCGAAGAGCCACCAGTGAGTGGCTaGCGCAGAAGCCTCTGCTTCTGCCCACTGAGCATCCCGAGCCTT | + |
|
Preference number: 1 (lower is better) Translates to: PGLFLCILEEPPVSG*RRSLCFCPLSIPSL Trigger: AAGGCTCGGGATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAAGAGACCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 90 bp | GATAAGGCAGGATGCAGTAGACAGAAGCCTCCTGGTCTCTTCCTCTaGATCCTCGAAGAGCCACCAGTGAGTGGCTGCCGCAGAAGCCTC | + |
|
Preference number: 1 (lower is better) Translates to: DKAGCSRQKPPGLFL*ILEEPPVSGCRRSL Trigger: GAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAAGAGACCAGGAGGCTTCTGTCTACTGCATCCTGCCTTATC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR TCA 90 bp | CTGACAGTGACAGGTGGCTATTTGTGTTCCATTCCTCAGAGGAGCTaGGTCCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATA | + |
|
Preference number: 1 (lower is better) Translates to: LTVTGGYLCSIPQRS*VLYPKQPSPPALSI Trigger: TATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGGACTCAGCTCCTCTGAGGAATGGAACACAAATAGCCACCTGTCACTGTCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 90 bp | GAGTCTAACATGGTTGTAGTGATCCTTCGGACTGACAGTGACAGGTaGCTATTTGTGTTCCATTCCTCAGAGGAGCTGAGTCCTCTATCC | + |
|
Preference number: 1 (lower is better) Translates to: ESNMVVVILRTDSDR*LFVFHSSEELSPLS Trigger: GGATAGAGGACTCAGCTCCTCTGAGGAATGGAACACAAATAGCCACCTGTCACTGTCAGTCCGAAGGATCACTACAACCATGTTAGACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 90 bp | AGTGTGACATCTGAGGAAGGGTTTCCAGGACAACGAGGACTCTTTTaGACAGAAACACCAATGGAACACAATGTCTCAGATTTCAAACAA | + |
|
Preference number: 1 (lower is better) Translates to: SVTSEEGFPGQRGLF*TETPMEHNVSDFKQ Trigger: TTGTTTGAAATCTGAGACATTGTGTTCCATTGGTGTTTCTGTCCAAAAGAGTCCTCGTTGTCCTGGAAACCCTTCCTCAGATGTCACACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR TCA 90 bp | AGGTGGCTCAGACCCTCTGGGTGTGGCAGCTCTCAGCACCCTCGGATAACCTCATCTGCTTCTGCCCACTaGGCATCCCGAGCCTTCGCC | + |
|
Preference number: 2 (lower is better) Translates to: RWLRPSGCGSSQHPRITSSASAH*ASRAFA Trigger: GGCGAAGGCTCGGGATGCTCAGTGGGCAGAAGCAGA...TGAGGTTATCCGAGGGTGCTGAGAGCTGCCACACCCAGAGGGTCTGAGCCACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR GCA 90 bp | AGGTGGCTCAGACCCTCTGGGTGTGGCAGCTCTCAGCACCCTCGGATAACCTCACCTGGTCTCTTCCTCTaGATCCTCGAAGAGCCACCA | + |
|
Preference number: 2 (lower is better) Translates to: RWLRPSGCGSSQHPRITSPGLFL*ILEEPP Trigger: TGGTGGCTCTTCGAGGATGCAGAGGAAGAGACCAGG...TGAGGTTATCCGAGGGTGCTGAGAGCTGCCACACCCAGAGGGTCTGAGCCACCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CCA 90 bp | CTGAGTCCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATAGTCAGAGGCAGACCCTCTGGGTGTaGCAGCTCTCAGCACCCTCG | + |
|
Preference number: 2 (lower is better) Translates to: LSPLSKTAITPSPLHSQRQTLWV*QLSAPS Trigger: CGAGGGTGCTGAGAGCTGCCACACCCAGAGGGTCTG...CCTCTGACTATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGGACTCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR GCA 90 bp | GTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCGGGAAAGATAAGGCAGGATaGAGTAGACAGAAGCCTCCT | + |
|
Preference number: 2 (lower is better) Translates to: VWQLSAPSDNLKLPHLSGKDKAG*SRQKPP Trigger: AGGAGGCTTCTGTCTACTGCATCCTGCCTTATCTTT...CCCGCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CCA 90 bp | GTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCGGGCAAAATCGTCACTTTTaGAAACTGTCCCAATTCATC | + |
|
Preference number: 2 (lower is better) Translates to: VWQLSAPSDNLKLPHLSGQNRHF*KLSQFI Trigger: GATGAATTGGGACAGTTTCCAAAAGTGACGATTTTG...CCCGCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CCA 90 bp | CCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATAGTCAGAGGGCAGGTCAGCTGAGTTTCTGCTaGGAACCTTCAAGTTTTGGT | + |
|
Preference number: 2 (lower is better) Translates to: PLSKTAITPSPLHSQRAGQLSFC*EPSSFG Trigger: ACCAAAACTTGAAGGTTCCCAGCAGAAACTCAGCTG...ACCTGCCCTCTGACTATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR GCA 90 bp | GGGTTTCCAGGACAACGAGGACTCTTTTGGACAGAAACACCAATGGAACACAATTGCCGCAGAAGCCTCTaGTTCTGCCCACTGAGCATC | + |
|
Preference number: 2 (lower is better) Translates to: GFPGQRGLFWTETPMEHNCRRSL*FCPLSI Trigger: GATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCA...ATTGTGTTCCATTGGTGTTTCTGTCCAAAAGAGTCCTCGTTGTCCTGGAAACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR TCA 90 bp | TGGCTATTTGTGTTCCATTCCTCAGAGGAGCTGAGTCCTCTATCCAAAACAGCCTTGGTGAGCATCAGCTaGGTTTCTGCTGGGAACCTT | + |
|
Preference number: 2 (lower is better) Translates to: WLFVFHSSEELSPLSKTALVSIS*VSAGNL Trigger: AAGGTTCCCAGCAGAAACTCAGCTGATGCTCACCAA...GGCTGTTTTGGATAGAGGACTCAGCTCCTCTGAGGAATGGAACACAAATAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CCA 90 bp | AGTGCTATGAGAAAAACATTTGAGTCTAACATGGTTGTAGTGATCCTTCGGACTGTGGCTCAGACCCTCTaGGTGTGGCAGCTCTCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: SAMRKTFESNMVVVILRTVAQTL*VWQLSA Trigger: TGCTGAGAGCTGCCACACCCAGAGGGTCTGAGCCAC...AGTCCGAAGGATCACTACAACCATGTTAGACTCAAATGTTTTTCTCATAGCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR TCA 90 bp | ATAGCATGGAAATTTGACAGATGTTTGGATAATCTACCAAGTGTCAAGGAGTATGTAGACACAAAGAATTaGCCACCTCAACAAATTCTC | + |
|
Preference number: 2 (lower is better) Translates to: IAWKFDRCLDNLPSVKEYVDTKN*PPQQIL Trigger: GAGAATTTGTTGAGGTGGTCAATTCTTTGTGTCTAC...ATACTCCTTGACACTTGGTAGATTATCCAAACATCTGTCAAATTTCCATGCTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR TCA 72 bp | GAGCATCCCGAGCCTTCGCCTTCGCCTTCGCCATGGTaGGACCCTGTCCGAGCACCCCGAAGGGCAGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: EHPEPSPSPSPW*DPVRAPRRAEA Trigger: AGCCTCTGCCCTTCGGGGTGCTCGGACAGGGTCTCACCATGGCGAAGGCGAAGGCGAAGGCTCGGGATGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 72 bp | CCACCAGTGAGTGGCTGCCGCAGAAGCCTCTGCTTCTaGCCACTGAGCATCCCGAGCCTTCGCCTTCGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: PPVSGCRRSLCF*PLSIPSLRLRL Trigger: AAGGCGAAGGCGAAGGCTCGGGATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 72 bp | GAAGAGCCACCAGTGAGTGGCTGCCGCAGAAGCCTCTaGTTCTGCCCACTGAGCATCCCGAGCCTTCGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: EEPPVSGCRRSL*FCPLSIPSLRL Trigger: AAGGCGAAGGCTCGGGATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR TCA 72 bp | CTGGTCTCTTCCTCTGCATCCTCGAAGAGCCACCAGTaGGTGGCTGCCGCAGAAGCCTCTGCTTCTGCCCAC | + |
|
Preference number: 3 (lower is better) Translates to: LVSSSASSKSHQ*VAAAEASASAH Trigger: GTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAAGAGACCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 72 bp | CTCTCCATAGTCAGAGGGCAGGTGGCTCAGACCCTCTaGGTGTGGCAGCTCTCAGCACCCTCGGATAACCTC | + |
|
Preference number: 3 (lower is better) Translates to: LSIVRGQVAQTL*VWQLSAPSDNL Trigger: GAGGTTATCCGAGGGTGCTGAGAGCTGCCACACCCAGAGGGTCTGAGCCACCTGCCCTCTGACTATGGAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 72 bp | TTCCTCTGCATCCTCGAAGAGCCACCAGTGAGTGGCTaGCGCAGAAGCCTCTGCTTCTGCCCACTGAGCATC | + |
|
Preference number: 3 (lower is better) Translates to: FLCILEEPPVSG*RRSLCFCPLSI Trigger: GATGCTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR GCA 72 bp | GGATGCAGTAGACAGAAGCCTCCTGGTCTCTTCCTCTaGATCCTCGAAGAGCCACCAGTGAGTGGCTGCCGC | + |
|
Preference number: 3 (lower is better) Translates to: GCSRQKPPGLFL*ILEEPPVSGCR Trigger: GCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAAGAGACCAGGAGGCTTCTGTCTACTGCATCC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 72 bp | TCTCTTCCTCTGCATCCTCGAAGAGCCACCAGTGAGTaGCTGCCGCAGAAGCCTCTGCTTCTGCCCACTGAG | + |
|
Preference number: 3 (lower is better) Translates to: SLPLHPRRATSE*LPQKPLLLPTE Trigger: CTCAGTGGGCAGAAGCAGAGGCTTCTGCGGCAGCCACTCACTGGTGGCTCTTCGAGGATGCAGAGGAAGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR TCA 72 bp | ATAACCTCAAGCTGCCACACCTCAGCGGGGGAAGGGTaGGCGTTTGGTGAGCATCAGCTGAGTTTCTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: ITSSCHTSAGEG*AFGEHQLSFCW Trigger: CCAGCAGAAACTCAGCTGATGCTCACCAAACGCTCACCCTTCCCCCGCTGAGGTGTGGCAGCTTGAGGTTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CAA 90 bp | GTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCGGGACAACGAGGACTCTTTaGGACAGAAACACCAATGGA | + |
|
Preference number: 3 (lower is better) Translates to: VWQLSAPSDNLKLPHLSGTTRTL*DRNTNG Trigger: TCCATTGGTGTTTCTGTCCAAAAGAGTCCTCGTTGT...CCCGCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR TCA 72 bp | CAGCGGGGGAAGGGTGAGCGTTTGGTGAGCATCAGCTaGGTTTCTGCTGGGAACCTTCAAGTTTTGGTAATG | + |
|
Preference number: 3 (lower is better) Translates to: QRGKGERLVSIS*VSAGNLQVLVM Trigger: CATTACCAAAACTTGAAGGTTCCCAGCAGAAACTCAGCTGATGCTCACCAAACGCTCACCCTTCCCCCGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR TCA 72 bp | ACAGGTGGCTATTTGTGTTCCATTCCTCAGAGGAGCTaGGTCCTCTATCCAAAACAGCCATCACCCCCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: TGGYLCSIPQRS*VLYPKQPSPPA Trigger: GGCTGGGGGTGATGGCTGTTTTGGATAGAGGACTCAGCTCCTCTGAGGAATGGAACACAAATAGCCACCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CAA 90 bp | CCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATAGTCAGAGGGCAGGTACAAAATCGTCACTTTaGGAAACTGTCCCAATTCAT | + |
|
Preference number: 3 (lower is better) Translates to: PLSKTAITPSPLHSQRAGTKSSL*ETVPIH Trigger: ATGAATTGGGACAGTTTCCAAAAGTGACGATTTTGT...ACCTGCCCTCTGACTATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 72 bp | ATGGTTGTAGTGATCCTTCGGACTGACAGTGACAGGTaGCTATTTGTGTTCCATTCCTCAGAGGAGCTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: MVVVILRTDSDR*LFVFHSSEELS Trigger: ACTCAGCTCCTCTGAGGAATGGAACACAAATAGCCACCTGTCACTGTCAGTCCGAAGGATCACTACAACCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CCA 72 bp | TCTGAGGAAGGGTTTCCAGGACAACGAGGACTCTTTTaGACAGAAACACCAATGGAACACAATGTCTCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: SEEGFPGQRGLF*TETPMEHNVSD Trigger: ATCTGAGACATTGTGTTCCATTGGTGTTTCTGTCCAAAAGAGTCCTCGTTGTCCTGGAAACCCTTCCTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR-3UTR CAA 90 bp | TGGCTATTTGTGTTCCATTCCTCAGAGGAGCTGAGTCCTCTATCCAAAACAGCCTGTAGACACAAAGAATaGACCACCTCAACAAATTCT | + |
|
Preference number: 3 (lower is better) Translates to: WLFVFHSSEELSPLSKTACRHKE*TTSTNS Trigger: AGAATTTGTTGAGGTGGTCAATTCTTTGTGTCTACA...GGCTGTTTTGGATAGAGGACTCAGCTCCTCTGAGGAATGGAACACAAATAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR TCA 90 bp | TGGGTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCTCTTCAGCAGTAGGATaGCGATGGCCGCCAGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: WVWQLSAPSDNLKLPHLSSSAVG*RWPPGG Trigger: CCCACCTGGCGGCCATCGTCATCCTACTGCTGAAGA...GCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACACCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR GCA 90 bp | CGCCTTCGCCATGGTGAGACCCTGTCCGAGCACCCCGAAGGGCAGAGGCTGCTGAGTCGTGAAGACCAGTaGGAACAGGAGCTGACTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RLRHGETLSEHPEGQRLLSREDQ*EQELTL Trigger: AAGAGTCAGCTCCTGTTCGCACTGGTCTTCACGACT...CAGCAGCCTCTGCCCTTCGGGGTGCTCGGACAGGGTCTCACCATGGCGAAGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR TCA 90 bp | GTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCGGGCAGCCACCACAGCAATaGGATCAAAGAAGCCCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: VWQLSAPSDNLKLPHLSGQPPQQ*DQRSPR Trigger: TCGAGGGCTTCTTTGATCTCATTGCTGTGGTGGCTG...CCCGCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR CCA 90 bp | GTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCGGGAGATCAGGTACACCGTaGCATAGGAGCAGGCAATGT | + |
|
Preference number: 4 (lower is better) Translates to: VWQLSAPSDNLKLPHLSGRSGTP*HRSRQC Trigger: ACATTGCCTGCTCCTATGCCACGGTGTACCTGATCT...CCCGCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR TCA 90 bp | CTGAGTCCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATAGTCAGAGGAGTGCGAACAGGAGCTaGCTCTTCCCAGAGATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LSPLSKTAITPSPLHSQRSANRS*LFPEIP Trigger: TGGGATCTCTGGGAAGAGTCAGCTCCTGTTCGCACT...CCTCTGACTATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGGACTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR CCA 90 bp | CCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATAGTCAGAGGGCAGGTGATCATAAAGAGCTGTaGAAGGATGGCCACGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: PLSKTAITPSPLHSQRAGDHKEL*KDGHGL Trigger: GAGTCCGTGGCCATCCTTCCACAGCTCTTTATGATC...ACCTGCCCTCTGACTATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR CCA 90 bp | AAGGCTTGTACTTATTGTGCACAAAATCGTCACTTTTGGAAACTGTCCCAATTCACGATGGCCGCCAGGTaGGACAGGTCCCCAGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KACTYCAQNRHFWKLSQFTMAAR*DRSPVS Trigger: GCTGACTGGGGACCTGTCCCACCTGGCGGCCATCGT...GAATTGGGACAGTTTCCAAAAGTGACGATTTTGTGCACAATAAGTACAAGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| 3UTR CAA 72 bp | AAAGGCTTGTACTTATTGTGCACAAAATCGTCACTTTaGGAAACTGTCCCAATTCATCTACATACTGAATTT | + |
|
Preference number: 4 (lower is better) Translates to: KGLYLLCTKSSL*ETVPIHLHTEF Trigger: AAATTCAGTATGTAGATGAATTGGGACAGTTTCCAAAAGTGACGATTTTGTGCACAATAAGTACAAGCCTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR CAA 90 bp | GCCTTCGCCATGGTGAGACCCTGTCCGAGCACCCCGAAGGGCAGAGGCTGCTGCAAGCGCCAGATCCAGTaGACCAGGTACAGAGCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: AFAMVRPCPSTPKGRGCCKRQIQ*TRYRAR Trigger: CCGCGCTCTGTACCTGGTCAACTGGATCTGGCGCTT...GCAGCAGCCTCTGCCCTTCGGGGTGCTCGGACAGGGTCTCACCATGGCGAAGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS TCA 90 bp | AGATCCCAGCACAGGAGCGCGTCTTCCAGATCTTCAGCAGTAGGATaGCGATGGCCGCCAGGTGGGACAGGTCCCCAGTCAGCCGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: RSQHRSASSRSSAVG*RWPPGGTGPQSAGR Trigger: TCTTCCGGCTGACTGGGGACCTGTCCCACCTGGCGGCCATCGTCATCCTACTGCTGAAGATCTGGAAGACGCGCTCCTGTGCTGGGATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR CAA 90 bp | GTGTGGCAGCTCTCAGCACCCTCGGATAACCTCAAGCTGCCACACCTCAGCGGGTCAGCCTCGCCAGTCTaGCTGATCATAAAGAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: VWQLSAPSDNLKLPHLSGSASPV*LIIKSC Trigger: ACAGCTCTTTATGATCAGCAAGACTGGCGAGGCTGA...CCCGCTGAGGTGTGGCAGCTTGAGGTTATCCGAGGGTGCTGAGAGCTGCCACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS-3UTR CAA 90 bp | CCTCTATCCAAAACAGCCATCACCCCCAGCCCTCTCCATAGTCAGAGGGCAGGTAGCTTCATAGACGTGTaGTATAAGGAAATGAAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: PLSKTAITPSPLHSQRAGSFIDV*YKEMKE Trigger: TTCCTTCATTTCCTTATACAACACGTCTATGAAGCT...ACCTGCCCTCTGACTATGGAGAGGGCTGGGGGTGATGGCTGTTTTGGATAGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS TCA 72 bp | CACAGGAGCGCGTCTTCCAGATCTTCAGCAGTAGGATaGCGATGGCCGCCAGGTGGGACAGGTCCCCAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: HRSASSRSSAVG*RWPPGGTGPQS Trigger: TGACTGGGGACCTGTCCCACCTGGCGGCCATCGTCATCCTACTGCTGAAGATCTGGAAGACGCGCTCCTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||
| CDS TCA 72 bp | AGGTCCATAAGATCTCAAGAGGAGAGAAGTCATGATTaGCTAGAAATGAGAGGCCTCCTACAGGAACCACCA | + |
|
Preference number: 6 (lower is better) Translates to: RSIRSQEERSHD*LEMRGLLQEPP Trigger: TGGTGGTTCCTGTAGGAGGCCTCTCATTTCTAGTCAATCATGACTTCTCTCCTCTTGAGATCTTATGGACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110731.4 |
||