Pregenerated sensors for KDELR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002778Ensembl transcript IDs: ENSMUST00000002855.14, ENSMUST00000211234.2, ENSMUST00000211716.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAGGTGGGCAGGCAGATATTGGCAGACGTAGTGTTTGGCAACCATGGGGCTGGGCCTTCCTCTGCCTCCTaGCCTGCCTCAGAGAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: KVGRQILADVVFGNHGAGPSSAS*PASEKA Trigger: AGCCTTCTCTGAGGCAGGGCAGGAGGCAGAGGAAGG...CCCAGCCCCATGGTTGCCAAACACTACGTCTGCCAATATCTGCCTGCCCACCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGTGAGGCCAGGGTTATaGCGGCAAGCTCAGCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: EASSLQSQLWMEGSRAPAVRPGL*RQAQLL Trigger: AAGAAGCTGAGCTTGCCGGCATAACCCTGGCCTCAC...TGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211716.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTGGGCAGGCAGATATTGGCAGACGTAGTGTTTGGCAACCATGGGGCTGGGTGGCAACCATGGGGCTaGGGTGGGATTTTGGAGAAG | + |
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Preference number: 2 (lower is better) Translates to: KVGRQILADVVFGNHGAGWQPWG*GGILEK Trigger: CTTCTCCAAAATCCCACCCCAGCCCCATGGTTGCCA...CCCAGCCCCATGGTTGCCAAACACTACGTCTGCCAATATCTGCCTGCCCACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGCATCGTTGTCACAGCCAAGGTGGGCAGGCAGATATTGGCAGACGTAGTGTGGCAACCATGGGGCTaGGGTGGGATTTTGGAGAAG | + |
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Preference number: 2 (lower is better) Translates to: RSIVVTAKVGRQILADVVWQPWG*GGILEK Trigger: CTTCTCCAAAATCCCACCCCAGCCCCATGGTTGCCA...CACTACGTCTGCCAATATCTGCCTGCCCACCTTGGCTGTGACAACGATGCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR CCA 90 bp | GGAACATGTAAGGAGCATCGTTGTCACAGCCAAGGTGGGCAGGCAGATATTGGCAAAGTCAGCTCTGGATaGAAGGCTCTCGGGCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: GTCKEHRCHSQGGQADIGKVSSG*KALGLQ Trigger: CTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTT...GCCAATATCTGCCTGCCCACCTTGGCTGTGACAACGATGCTCCTTACATGTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTTACCACCAATCCAGGAACATGTAAGGAGCATCGTTGTCACAGCCAAGGTGCCTTCCTCTGCCTCCTaGCCTGCCTCAGAGAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: FLPPIQEHVRSIVVTAKVPSSAS*PASEKA Trigger: AGCCTTCTCTGAGGCAGGGCAGGAGGCAGAGGAAGG...CACCTTGGCTGTGACAACGATGCTCCTTACATGTTCCTGGATTGGTGGTAAGAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR TCA 90 bp | CAAATTCTGTACAAAAACATGGTGTTAGAGTGTAGTCTGGGTCACCACCTGGGTCTCAGAGAAGGCTGGTaGGGCCAGGGTTATGCCGGC | + |
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Preference number: 2 (lower is better) Translates to: QILYKNMVLECSLGHHLGLREGW*GQGYAG Trigger: GCCGGCATAACCCTGGCCTCACCAGCCTTCTCTGAG...ACCCAGGTGGTGACCCAGACTACACTCTAACACCATGTTTTTGTACAGAATTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211716.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTTACCACCAATCCAGGAACATGTAAGGAGCATCGTTGTCACAGCCAAGGTGAAAGTCAGCTCTGGATaGAAGGCTCTCGGGCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: FLPPIQEHVRSIVVTAKVKVSSG*KALGLQ Trigger: CTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTT...CACCTTGGCTGTGACAACGATGCTCCTTACATGTTCCTGGATTGGTGGTAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTTACCACCAATCCAGGAACATGTAAGGAGCATCGTTGTCACAGCCAAGGTGTTGTCACAGCCAAGGTaGGCAGGCAGATATTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: FLPPIQEHVRSIVVTAKVLSQPR*AGRYWQ Trigger: CTGCCAATATCTGCCTGCCCACCTTGGCTGTGACAA...CACCTTGGCTGTGACAACGATGCTCCTTACATGTTCCTGGATTGGTGGTAAGAA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR CCA 72 bp | CAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATaGAAGGCTCTCGGGCTCCAGCAGCCTTCCTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: QERRALYKVSSG*KALGLQQPSSA Trigger: GGCAGAGGAAGGCTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| 3UTR CCA 72 bp | GAGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTaGATGGAAGGCTCTCGGGCTCCAGCAGCCTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: EPGEASSLQSQL*MEGSRAPAAFL Trigger: GAGGAAGGCTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGCAGATATTGGCAGACGTAGTGTTTGGCAACCATGGGGCTGGGGTGGGATTGGCTGGGGTGGGATTTaGGAGAAGGGGGTCGACCTC | + |
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Preference number: 3 (lower is better) Translates to: QADIGRRSVWQPWGWGGIGWGGI*EKGVDL Trigger: GAGGTCGACCCCCTTCTCCAAAATCCCACCCCAGCC...AATCCCACCCCAGCCCCATGGTTGCCAAACACTACGTCTGCCAATATCTGCCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR-3UTR CAA 90 bp | CAAATTCTGTACAAAAACATGGTGTTAGAGTGTAGTCTGGGTCACCACCTGGGTGGCTGGGGTGGGATTTaGGAGAAGGGGGTCGACCTC | + |
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Preference number: 3 (lower is better) Translates to: QILYKNMVLECSLGHHLGGWGGI*EKGVDL Trigger: GAGGTCGACCCCCTTCTCCAAAATCCCACCCCAGCC...ACCCAGGTGGTGACCCAGACTACACTCTAACACCATGTTTTTGTACAGAATTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR TCA 90 bp | AAGGTGGGCAGGCAGATATTGGCAGACGTAGTGTTTGGCAACCATGGGGCTGGGACAGGTAATGGCTGGTaGTGGTCTCCGCCTCACCCG | + |
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Preference number: 4 (lower is better) Translates to: KVGRQILADVVFGNHGAGTGNGW*WSPPHP Trigger: CGGGTGAGGCGGAGACCATCACCAGCCATTACCTGT...CCCAGCCCCATGGTTGCCAAACACTACGTCTGCCAATATCTGCCTGCCCACCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002855.14 |
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| CDS-3UTR GCA 90 bp | GCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCGGCTCTTCCCTGAAATaGCCGCACACGATCGGGACT | + |
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Preference number: 4 (lower is better) Translates to: ARRGELFTKSALDGRLSGGSSLK*PHTIGT Trigger: AGTCCCGATCGTGTGCGGGCATTTCAGGGAAGAGCC...GCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR TCA 90 bp | CTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGCCTTCCTCCAGATATCGGGCAGTaGACACCACAGCAAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: LFTKSALDGRLSGSSSLPPDIGQ*TPQQTG Trigger: TCCTGTTTGCTGTGGTGTTCACTGCCCGATATCTGG...AGGAAGGCTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR TCA 90 bp | GGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGCGTGAAATGTAGTTGGTaGACAGGTCCAGATATCGGG | + |
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Preference number: 4 (lower is better) Translates to: GELFTKSALDGRLSGSSSVKCSW*TGPDIG Trigger: CCCGATATCTGGACCTGTTCACCAACTACATTTCAC...GCTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR CCA 90 bp | AGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGATGATAGCTAGGAGGTaGGAGAGGTCTCCCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: RRALYKVSSGWKALGLQQMIARR*ERSPRN Trigger: ATTCCTGGGAGACCTCTCCCACCTCCTAGCTATCAT...CTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR CCA 90 bp | GAGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGATGATAGCTAGGAGGTaGGAGAGGTCTCCCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: EPGEASSLQSQLWMEGSRMIARR*ERSPRN Trigger: ATTCCTGGGAGACCTCTCCCACCTCCTAGCTATCAT...CCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR TCA 90 bp | GAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGTGAAATGTAGTTGGTaGACAGGTCCAGATATCGGG | + |
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Preference number: 4 (lower is better) Translates to: EASSLQSQLWMEGSRAPAVKCSW*TGPDIG Trigger: CCCGATATCTGGACCTGTTCACCAACTACATTTCAC...TGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR TCA 90 bp | GCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGCCTTCCAGCGCCAGATCCAATTaGAGAGATAGAGTGTACGGT | + |
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Preference number: 4 (lower is better) Translates to: ALYKVSSGWKALGLQQPSSARSN*RDRVYG Trigger: ACCGTACACTCTATCTCTTCAATTGGATCTGGCGCT...GGAAGGCTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 |
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| CDS-3UTR TCA 90 bp | GAGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGAGCGCCAGATCCAATTaGAGAGATAGAGTGTACGGT | + |
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Preference number: 4 (lower is better) Translates to: EPGEASSLQSQLWMEGSRSARSN*RDRVYG Trigger: ACCGTACACTCTATCTCTTCAATTGGATCTGGCGCT...CCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 |
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| CDS-3UTR CCA 90 bp | GAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAAGAGGGGTGAAGTCATaGTTGACCAGGAAAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: EASSLQSQLWMEGSRAPARGVKS*LTRKAK Trigger: TTTGGCTTTCCTGGTCAACCATGACTTCACCCCTCT...TGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| CDS-3UTR CCA 90 bp | AGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGAGAGGGGTGAAGTCATaGTTGACCAGGAAAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: SQERRALYKVSSGWKALGRGVKS*LTRKAK Trigger: TTTGGCTTTCCTGGTCAACCATGACTTCACCCCTCT...CCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| CDS-3UTR CCA 90 bp | CTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCAGCCTTCCTCTAGAGGGGTGAAGTCATaGTTGACCAGGAAAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: LYKVSSGWKALGLQQPSSRGVKS*LTRKAK Trigger: TTTGGCTTTCCTGGTCAACCATGACTTCACCCCTCT...AGAGGAAGGCTGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| CDS-3UTR GCA 90 bp | GAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCATGTAGACCACCTTCATaGAGGTGTTGTAGAGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: EASSLQSQLWMEGSRAPACRPPS*RCCRVK Trigger: TTTCACTCTACAACACCTGCATGAAGGTGGTCTACA...TGCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR GCA 90 bp | AGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGTGTAGACCACCTTCATaGAGGTGTTGTAGAGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: SQERRALYKVSSGWKALGCRPPS*RCCRVK Trigger: TTTCACTCTACAACACCTGCATGAAGGTGGTCTACA...CCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| 3UTR CAA 72 bp | TCTGGGTCACCACCTGGGTCAGCCAGCCTCTTTCCCTaGCCTAAGCCCATAGCTTCCCCTAATTTATCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SGSPPGSASLFP*PKPIASPNLSK Trigger: TTTTGATAAATTAGGGGAAGCTATGGGCTTAGGCAAGGGAAAGAGGCTGGCTGACCCAGGTGGTGACCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR GCA 90 bp | CTCTTTCCCTTGCCTAAGCCCATAGCTTCCCCTAATTTATCAAAAACAGGACAAGGCTCTTCCCTGAAATaGCCGCACACGATCGGGACT | + |
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Preference number: 4 (lower is better) Translates to: LFPLPKPIASPNLSKTGQGSSLK*PHTIGT Trigger: AGTCCCGATCGTGTGCGGGCATTTCAGGGAAGAGCC...TTGTCCTGTTTTTGATAAATTAGGGGAAGCTATGGGCTTAGGCAAGGGAAAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR TCA 90 bp | CAAAGAATCAGCCATCAAATTCTGTACAAAAACATGGTGTTAGAGTGTAGTCTGCCAGATATCGGGCAGTaGACACCACAGCAAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: QRISHQILYKNMVLECSLPDIGQ*TPQQTG Trigger: TCCTGTTTGCTGTGGTGTTCACTGCCCGATATCTGG...CAGACTACACTCTAACACCATGTTTTTGTACAGAATTTGATGGCTGATTCTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR CAA 90 bp | GGAGGGGTGGGGAGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGTCCGCCTCACCCGTCTaGCTCACCATGAACAACTGT | + |
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Preference number: 5 (lower is better) Translates to: GGVGSQERRALYKVSSGWSASPV*LTMNNC Trigger: ACAGTTGTTCATGGTGAGCAAGACGGGTGAGGCGGA...CCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCTCCCCACCCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 |
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| CDS-3UTR CAA 90 bp | TGGAGGGGTGGGGAGCCAGGAGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGGGGTGAAGTCATGGTaGACCAGGAAAGCCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: WRGGEPGEASSLQSQLWMGVKSW*TRKAKI Trigger: TATTTTGGCTTTCCTGGTCAACCATGACTTCACCCC...CATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCTCCTGGCTCCCCACCCCTCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| CDS-3UTR CAA 90 bp | GGTGGGCAGGCAGATATTGGCAGACGTAGTGTTTGGCAACCATGGGGCTGGGGTGGGGTGAAGTCATGGTaGACCAGGAAAGCCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: GGQADIGRRSVWQPWGWGGVKSW*TRKAKI Trigger: TATTTTGGCTTTCCTGGTCAACCATGACTTCACCCC...ACCCCAGCCCCATGGTTGCCAAACACTACGTCTGCCAATATCTGCCTGCCCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000002855.14 ENSMUST00000211716.2 |
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| CDS-3UTR CAA 90 bp | AGAGGCGAGCTCTTTACAAAGTCAGCTCTGGATGGAAGGCTCTCGGGCTCCAGCGGGGTGAAGTCATGGTaGACCAGGAAAGCCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: RGELFTKSALDGRLSGSSGVKSW*TRKAKI Trigger: TATTTTGGCTTTCCTGGTCAACCATGACTTCACCCC...GCTGGAGCCCGAGAGCCTTCCATCCAGAGCTGACTTTGTAAAGAGCTCGCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000002855.14 ENSMUST00000211234.2 ENSMUST00000211716.2 |
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| CDS-3UTR CAA 90 bp | CTCTTTCCCTTGCCTAAGCCCATAGCTTCCCCTAATTTATCAAAAACAGGACAATCCGCCTCACCCGTCTaGCTCACCATGAACAACTGT | + |
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Preference number: 5 (lower is better) Translates to: LFPLPKPIASPNLSKTGQSASPV*LTMNNC Trigger: ACAGTTGTTCATGGTGAGCAAGACGGGTGAGGCGGA...TTGTCCTGTTTTTGATAAATTAGGGGAAGCTATGGGCTTAGGCAAGGGAAAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002855.14 |
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