Pregenerated sensors for KCTD9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034327Ensembl transcript IDs: ENSMUST00000078053.13, ENSMUST00000152243.8, ENSMUST00000156700.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGGGACTTGCCTCCAATGAAGCAGAAGCATGCTCACTAGACAGCTaGAGTACTGGTGAGCCCTTCCTTCTCCTGCACAAGGATACACAA | + |
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Preference number: 1 (lower is better) Translates to: MGLASNEAEACSLDS*STGEPFLLLHKDTQ Trigger: TTGTGTATCCTTGTGCAGGAGAAGGAAGGGCTCACCAGTACTGCAGCTGTCTAGTGAGCATGCTTCTGCTTCATTGGAGGCAAGTCCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR GCA 90 bp | AGCATGAGAACTGGACGAGTGAAGGGAAAGAGTAGCCTAGTCTCGTaGAGAATGGGACTTGCCTCCAATGAAGCAGAAGCATGCTCACTA | + |
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Preference number: 1 (lower is better) Translates to: SMRTGRVKGKSSLVS*RMGLASNEAEACSL Trigger: TAGTGAGCATGCTTCTGCTTCATTGGAGGCAAGTCCCATTCTGCACGAGACTAGGCTACTCTTTCCCTTCACTCGTCCAGTTCTCATGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR TCA 90 bp | ATTAAGAGCGCGGCCTGTGTGGTCCGCTCCTACATGGCACCATCATaGAGAACTGTGGGAAATGCAGAAAGTGCTGTCTTAGAAAAGCAA | + |
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Preference number: 1 (lower is better) Translates to: IKSAACVVRSYMAPS*RTVGNAESAVLEKQ Trigger: TTGCTTTTCTAAGACAGCACTTTCTGCATTTCCCACAGTTCTTCATGATGGTGCCATGTAGGAGCGGACCACACAGGCCGCGCTCTTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR GCA 90 bp | GAGCGAGCCACAGGTACTGACATAGAGCATCGTGTCCTAGCCAAATaGTTCCTTTGTTCATCAACCTTTCCTGGTGGCTATAATCAAGCC | + |
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Preference number: 1 (lower is better) Translates to: ERATGTDIEHRVLAK*FLCSSTFPGGYNQA Trigger: GGCTTGATTATAGCCACCAGGAAAGGTTGATGAACAAAGGAAGCATTTGGCTAGGACACGATGCTCTATGTCAGTACCTGTGGCTCGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR GCA 90 bp | CTCCTACATGGCACCATCATGAAGAACTGTGGGAAATGCAGAAAGTaGTGTCTTAGAAAAGCAAGAGCAGAAACAGGCCGTCAGCGTTCC | + |
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Preference number: 1 (lower is better) Translates to: LLHGTIMKNCGKCRK*CLRKARAETGRQRS Trigger: GGAACGCTGACGGCCTGTTTCTGCTCTTGCTTTTCTAAGACAGCACTTTCTGCATTTCCCACAGTTCTTCATGATGGTGCCATGTAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR GCA 90 bp | TGTGGTCCGCTCCTACATGGCACCATCATGAAGAACTGTGGGAAATaGAGAAAGTGCTGTCTTAGAAAAGCAAGAGCAGAAACAGGCCGT | + |
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Preference number: 1 (lower is better) Translates to: CGPLLHGTIMKNCGK*RKCCLRKARAETGR Trigger: ACGGCCTGTTTCTGCTCTTGCTTTTCTAAGACAGCACTTTCTGCATTTCCCACAGTTCTTCATGATGGTGCCATGTAGGAGCGGACCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR CCA 90 bp | GTCTTAGAAAAGCAAGAGCAGAAACAGGCCGTCAGCGTTCCACACTaGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGT | + |
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Preference number: 1 (lower is better) Translates to: VLEKQEQKQAVSVPH*SFINVVSISSEPRS Trigger: ACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTGGAACGCTGACGGCCTGTTTCTGCTCTTGCTTTTCTAAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR TCA 90 bp | TTAGAATTTCTTAGTCCCCTCTGCAGGGTTTCAGCTATAATTATCTaGTGTTGCCTTCTTGTAGGCGACTGCAGGATTTATTCATACTCC | + |
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Preference number: 1 (lower is better) Translates to: LEFLSPLCRVSAIII*CCLLVGDCRIYSYS Trigger: GGAGTATGAATAAATCCTGCAGTCGCCTACAAGAAGGCAACATCAGATAATTATAGCTGAAACCCTGCAGAGGGGACTAAGAAATTCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR GCA 90 bp | CAGCACTTGTTGGGGCTGAGAAATCACAAGTTTGAGGTCAGCCTTTaGTATATAATGAGTTCTTATGAACAGACAAACAAGCTAACTAAG | + |
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Preference number: 1 (lower is better) Translates to: QHLLGLRNHKFEVSL*YIMSSYEQTNKLTK Trigger: CTTAGTTAGCTTGTTTGTCTGTTCATAAGAACTCATTATATAGCAAAGGCTGACCTCAAACTTGTGATTTCTCAGCCCCAACAAGTGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR TCA 90 bp | CACACTGGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCGACATGCCACTCTCCTaGAGGAGACTAGGGAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: HTGHLLMWFPSALNPAVPDMPLS*RRLGSL Trigger: CAGACTCCCTAGTCTCCTTCAGGAGAGTGGCATGTC...GGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTCATTCCTGGAGGGGAAGAGGGATGCAGGGTCTCACTGTTTATTCCAATCTCTGGGATCACAGGTATaGGTCCCCATGCTTGCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: SSFLEGKRDAGSHCLFQSLGSQV*VPMLAF Trigger: GAAAGCAAGCATGGGGACTCATACCTGTGATCCCAG...AGATTGGAATAAACAGTGAGACCCTGCATCCCTCTTCCCCTCCAGGAATGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR GCA 90 bp | GTCTGTAATGATTCACTGCCTCAAGCCGACCAGCCTGTAGGATTTAGAACCCATAGCACAGCAGAGATTTaGATGTGCGAGGTTGCAGCG | + |
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Preference number: 2 (lower is better) Translates to: VCNDSLPQADQPVGFRTHSTAEI*MCEVAA Trigger: CGCTGCAACCTCGCACATGCAAATCTCTGCTGTGCT...ATGGGTTCTAAATCCTACAGGCTGGTCGGCTTGAGGCAGTGAATCATTACAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156700.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACGGAAACGCTTCCATCTaGGACATCTTCCTCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHGNASI*DIFLQL Trigger: GAGCTGGAGGAAGATGTCCCAGATGGAAGCGTTTCC...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACACTGTGTTTCCAAATGAAGCAGAAGCATaGTCACTAGACAGCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: MWFPSALNPAVPTHTVFPNEAEA*SLDSCS Trigger: ACTGCAGCTGTCTAGTGAGCATGCTTCTGCTTCATT...TGGAAACACAGTGTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACACTGTGTTTCCACGTGTCCTAGCCAAATaGTTCCTTTGTTCATCAACC | + |
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Preference number: 2 (lower is better) Translates to: MWFPSALNPAVPTHTVFPRVLAK*FLCSST Trigger: GGTTGATGAACAAAGGAAGCATTTGGCTAGGACACG...TGGAAACACAGTGTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACACTGTGTTTCCAACACAGCTTCTTCCCTaGTTTTGGGCAACAAATAAG | + |
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Preference number: 2 (lower is better) Translates to: MWFPSALNPAVPTHTVFPTQLLP*FWATNK Trigger: CTTATTTGTTGCCCAAAAGCAGGGAAGAAGCTGTGT...TGGAAACACAGTGTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACACTGTGTTTCCAAGAATAATGAAGACATaGCACTCTCCTGAAGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: MWFPSALNPAVPTHTVFPRIMKT*HSPEGD Trigger: GTCTCCTTCAGGAGAGTGGCATGTCTTCATTATTCT...TGGAAACACAGTGTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACACTGTGTTTCCAAATAGCTACTACTCCTaGTCAGAGACCAGACAAATG | + |
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Preference number: 2 (lower is better) Translates to: MWFPSALNPAVPTHTVFPNSYYS*SETRQM Trigger: CATTTGTCTGGTCTCTGACCAGGAGTAGTAGCTATT...TGGAAACACAGTGTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | GTCTGTAATGATTCACTGCCTCAAGCCGACCAGCCTGTAGGATTTAGAACCCATTTCTTCCTGTGCTTGTaGCAACTGAGCATGAGAACT | + |
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Preference number: 2 (lower is better) Translates to: VCNDSLPQADQPVGFRTHFFLCL*QLSMRT Trigger: AGTTCTCATGCTCAGTTGTCACAAGCACAGGAAGAA...ATGGGTTCTAAATCCTACAGGCTGGTCGGCTTGAGGCAGTGAATCATTACAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACCAACTCCACTCAAAATaGAGCAGCATCATCTACTGC | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHQLHSK*SSIIYC Trigger: GCAGTAGATGATGCTGCTGCATTTTGAGTGGAGTTG...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | CACACTGGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCAATGAAGCAGAAGCATaGTCACTAGACAGCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: HTGHLLMWFPSALNPAVPNEAEA*SLDSCS Trigger: ACTGCAGCTGTCTAGTGAGCATGCTTCTGCTTCATT...GGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | AGCTCATTCCTGGAGGGGAAGAGGGATGCAGGGTCTCACTGTTTATTCCAATCTATGAGTCCCCATGCTTaGTTTCTGAATAGGCAATTG | + |
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Preference number: 2 (lower is better) Translates to: SSFLEGKRDAGSHCLFQSMSPHA*FLNRQL Trigger: CAATTGCCTATTCAGAAAGCAAGCATGGGGACTCAT...AGATTGGAATAAACAGTGAGACCCTGCATCCCTCTTCCCCTCCAGGAATGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR TCA 90 bp | TTCAGCTATAATTATCTGATGTTGCCTTCTTGTAGGCGACTGCAGGATTTATTCGACATGCCACTCTCCTaGAGGAGACTAGGGAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: FSYNYLMLPSCRRLQDLFDMPLS*RRLGSL Trigger: CAGACTCCCTAGTCTCCTTCAGGAGAGTGGCATGTC...GAATAAATCCTGCAGTCGCCTACAAGAAGGCAACATCAGATAATTATAGCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | GCCATCAGTTTAGAATTTCTTAGTCCCCTCTGCAGGGTTTCAGCTATAATTATCTGCTCACTAGACAGCTaGAGTACTGGTGAGCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: AISLEFLSPLCRVSAIIICSLDS*STGEPF Trigger: GAAGGGCTCACCAGTACTGCAGCTGTCTAGTGAGCA...GATAATTATAGCTGAAACCCTGCAGAGGGGACTAAGAAATTCTAAACTGATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | CACACTGGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACAGCTTCTTCCCTaGTTTTGGGCAACAAATAAG | + |
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Preference number: 2 (lower is better) Translates to: HTGHLLMWFPSALNPAVPTQLLP*FWATNK Trigger: CTTATTTGTTGCCCAAAAGCAGGGAAGAAGCTGTGT...GGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACAGAATAATGAAGACATaGCACTCTCCTGAAGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHRIMKT*HSPEGD Trigger: GTCTCCTTCAGGAGAGTGGCATGTCTTCATTATTCT...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCCCTGTAAAGGAGTGCTCTCCTCCCCATGTAAGCCCTTTACTGTGAAGGAACTGTGTCTCAAAATGTaGGAGCAGATTATGACTCAA | + |
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Preference number: 2 (lower is better) Translates to: FPCKGVLSSPCKPFTVKELCLKM*EQIMTQ Trigger: TTGAGTCATAATCTGCTCTCACATTTTGAGACACAG...TTCCTTCACAGTAAAGGGCTTACATGGGGAGGAGAGCACTCCTTTACAGGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACCTAATTGGCATTACATaGACTGTGATCAGGCTAAAG | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHLIGIT*TVIRLK Trigger: CTTTAGCCTGATCACAGTTCATGTAATGCCAATTAG...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACTCAGCTATAATTATCTaGTGTTGCCTTCTTGTAGGC | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHSAIII*CCLLVG Trigger: GCCTACAAGAAGGCAACATCAGATAATTATAGCTGA...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCAGTATTTGAAAGCATTATGTAGACAACAGCCACTGAGCCAGGCATGGTGGGAGAAATCACAAGTTTaGGGTCAGCCTTTGCTATAT | + |
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Preference number: 2 (lower is better) Translates to: QQYLKALCRQQPLSQAWWEKSQV*GQPLLY Trigger: ATATAGCAAAGGCTGACCTCAAACTTGTGATTTCTC...CCACCATGCCTGGCTCAGTGGCTGTTGTCTACATAATGCTTTCAAATACTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACTTTCTTAGTCCCCTCTaGAGGGTTTCAGCTATAATT | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHFLSPL*RVSAII Trigger: AATTATAGCTGAAACCCTGCAGAGGGGACTAAGAAA...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTCCTGTGCTTGTGACAACTGAGCATGAGAACTGGACGAGTGAAGGGAAACTAATTGGCATTACATaGACTGTGATCAGGCTAAAG | + |
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Preference number: 2 (lower is better) Translates to: FLPVLVTTEHENWTSEGKLIGIT*TVIRLK Trigger: CTTTAGCCTGATCACAGTTCATGTAATGCCAATTAG...TTTCCCTTCACTCGTCCAGTTCTCATGCTCAGTTGTCACAAGCACAGGAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACCACTACACAACTCGATaGATGGATGGAGAAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHHYTTR*MDGEIK Trigger: TTTTATTTCTCCATCCATCCATCGAGTTGTGTAGTG...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | GCCATCAGTTTAGAATTTCTTAGTCCCCTCTGCAGGGTTTCAGCTATAATTATCCAACTCCACTCAAAATaGAGCAGCATCATCTACTGC | + |
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Preference number: 2 (lower is better) Translates to: AISLEFLSPLCRVSAIIIQLHSK*SSIIYC Trigger: GCAGTAGATGATGCTGCTGCATTTTGAGTGGAGTTG...GATAATTATAGCTGAAACCCTGCAGAGGGGACTAAGAAATTCTAAACTGATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACGGCACTTCCACACAATaGCTAAATAAAAGCAAATAT | + |
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Preference number: 2 (lower is better) Translates to: GHLLMWFPSALNPAVPTHGTSTQ*LNKSKY Trigger: ATATTTGCTTTTATTTAGGCATTGTGTGGAAGTGCC...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCTGTAAAGGAGTGCTCTCCTCCCCATGTAAGCCCTTTACTGTGAAGGAAGGCACTTCCACACAATaGCTAAATAAAAGCAAATAT | + |
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Preference number: 2 (lower is better) Translates to: FPCKGVLSSPCKPFTVKEGTSTQ*LNKSKY Trigger: ATATTTGCTTTTATTTAGGCATTGTGTGGAAGTGCC...TTCCTTCACAGTAAAGGGCTTACATGGGGAGGAGAGCACTCCTTTACAGGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTCCTGTGCTTGTGACAACTGAGCATGAGAACTGGACGAGTGAAGGGAAACACTACACAACTCGATaGATGGATGGAGAAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: FLPVLVTTEHENWTSEGKHYTTR*MDGEIK Trigger: TTTTATTTCTCCATCCATCCATCGAGTTGTGTAGTG...TTTCCCTTCACTCGTCCAGTTCTCATGCTCAGTTGTCACAAGCACAGGAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CCA 90 bp | TTCAGCTATAATTATCTGATGTTGCCTTCTTGTAGGCGACTGCAGGATTTATTCAATAGCTACTACTCCTaGTCAGAGACCAGACAAATG | + |
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Preference number: 2 (lower is better) Translates to: FSYNYLMLPSCRRLQDLFNSYYS*SETRQM Trigger: CATTTGTCTGGTCTCTGACCAGGAGTAGTAGCTATT...GAATAAATCCTGCAGTCGCCTACAAGAAGGCAACATCAGATAATTATAGCTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CAA 90 bp | GGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACCAGCGCAGCTCTGACTaGGTTGGAGTGGCCAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: GHLLMWFPSALNPAVPTHQRSSD*VGVASR Trigger: TCTGCTGGCCACTCCAACCAAGTCAGAGCTGCGCTG...GTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156700.2 |
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| 3UTR TCA 72 bp | GCGGCCTGTGTGGTCCGCTCCTACATGGCACCATCATaGAGAACTGTGGGAAATGCAGAAAGTGCTGTCTTA | + |
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Preference number: 3 (lower is better) Translates to: AACVVRSYMAPS*RTVGNAESAVL Trigger: TAAGACAGCACTTTCTGCATTTCCCACAGTTCTTCATGATGGTGCCATGTAGGAGCGGACCACACAGGCCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR CCA 72 bp | CCATTAAGAGCGCGGCCTGTGTGGTCCGCTCCTACATaGCACCATCATGAAGAACTGTGGGAAATGCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: PLRARPVWSAPT*HHHEELWEMQK Trigger: TTTCTGCATTTCCCACAGTTCTTCATGATGGTGCCATGTAGGAGCGGACCACACAGGCCGCGCTCTTAATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR-3UTR CAA 90 bp | ATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCACACACACTGTGTTTCCACGTGCAGAATGGGACTaGCCTCCAATGAAGCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: MWFPSALNPAVPTHTVFPRAEWD*PPMKQK Trigger: CTTCTGCTTCATTGGAGGCAAGTCCCATTCTGCACG...TGGAAACACAGTGTGTGTGGGAACTGCGGGGTTCAGAGCTGATGGAAACCACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CCA 72 bp | TCATTCAACAGTGAGGGACTCCCCTTAGCTCATTCCTaGAGGGGAAGAGGGATGCAGGGTCTCACTGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: SFNSEGLPLAHS*RGRGMQGLTVY Trigger: ATAAACAGTGAGACCCTGCATCCCTCTTCCCCTCCAGGAATGAGCTAAGGGGAGTCCCTCACTGTTGAATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCTGTAAAGGAGTGCTCTCCTCCCCATGTAAGCCCTTTACTGTGAAGGAACGTGCAGAATGGGACTaGCCTCCAATGAAGCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: FPCKGVLSSPCKPFTVKERAEWD*PPMKQK Trigger: CTTCTGCTTCATTGGAGGCAAGTCCCATTCTGCACG...TTCCTTCACAGTAAAGGGCTTACATGGGGAGGAGAGCACTCCTTTACAGGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CCA 72 bp | AATCTAGGCTCAAAATCCCACTCCTCTCGACTTGGCTaGGATCACAGGTATGAGTCCCCATGCTTGCTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: NLGSKSHSSRLG*DHRYESPCLLS Trigger: AGAAAGCAAGCATGGGGACTCATACCTGTGATCCCAGCCAAGTCGAGAGGAGTGGGATTTTGAGCCTAGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR CCA 72 bp | GCATTATGTAGACAACAGCCACTGAGCCAGGCATGGTaGCACACATTTATGATTCCAGCACTTGTTGGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ALCRQQPLSQAW*HTFMIPALVGA Trigger: AGCCCCAACAAGTGCTGGAATCATAAATGTGTGCCACCATGCCTGGCTCAGTGGCTGTTGTCTACATAATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR CAA 90 bp | GCCATCAGTTTAGAATTTCTTAGTCCCCTCTGCAGGGTTTCAGCTATAATTATCTTGGAGCCTCTCAGGTaGGCTTCCTGGAGGTCACAC | + |
|
Preference number: 3 (lower is better) Translates to: AISLEFLSPLCRVSAIIILEPLR*ASWRSH Trigger: GTGTGACCTCCAGGAAGCCAACCTGAGAGGCTCCAA...GATAATTATAGCTGAAACCCTGCAGAGGGGACTAAGAAATTCTAAACTGATGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156700.2 |
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| 3UTR-3UTR CAA 90 bp | CACACTGGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCAGCCAAATGCTTCCTTaGTTCATCAACCTTTCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: HTGHLLMWFPSALNPAVPSQMLP*FINLSW Trigger: CCAGGAAAGGTTGATGAACAAAGGAAGCATTTGGCT...GGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCTGTAAAGGAGTGCTCTCCTCCCCATGTAAGCCCTTTACTGTGAAGGAAAGCCAAATGCTTCCTTaGTTCATCAACCTTTCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: FPCKGVLSSPCKPFTVKESQMLP*FINLSW Trigger: CCAGGAAAGGTTGATGAACAAAGGAAGCATTTGGCT...TTCCTTCACAGTAAAGGGCTTACATGGGGAGGAGAGCACTCCTTTACAGGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CCA 72 bp | AAAGCATTATGTAGACAACAGCCACTGAGCCAGGCATaGTGGCACACATTTATGATTCCAGCACTTGTTGGG | + |
|
Preference number: 3 (lower is better) Translates to: KALCRQQPLSQA*WHTFMIPALVG Trigger: CCCAACAAGTGCTGGAATCATAAATGTGTGCCACCATGCCTGGCTCAGTGGCTGTTGTCTACATAATGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR TCA 72 bp | ATCTATGAACAGAGTGTCCTTCTGTTACAGTCCCAATaGGGGGAAAGCCAATTACTTCCCCTTATGCACCTC | + |
|
Preference number: 3 (lower is better) Translates to: IYEQSVLLLQSQ*GESQLLPLMHL Trigger: GAGGTGCATAAGGGGAAGTAATTGGCTTTCCCCTCATTGGGACTGTAACAGAAGGACACTCTGTTCATAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR GCA 72 bp | ATAATAGCTACTACTCCTGGTCAGAGACCAGACAAATaGCCCAACTCCACTCAAAATGCAGCAGCATCATCT | + |
|
Preference number: 3 (lower is better) Translates to: IIATTPGQRPDK*PNSTQNAAASS Trigger: AGATGATGCTGCTGCATTTTGAGTGGAGTTGGGGCATTTGTCTGGTCTCTGACCAGGAGTAGTAGCTATTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR GCA 72 bp | ACAGGTACTGACATAGAGCATCGTGTCCTAGCCAAATaGTTCCTTTGTTCATCAACCTTTCCTGGTGGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: TGTDIEHRVLAK*FLCSSTFPGGY Trigger: ATAGCCACCAGGAAAGGTTGATGAACAAAGGAAGCATTTGGCTAGGACACGATGCTCTATGTCAGTACCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CCA 72 bp | AAGCAAGAGCAGAAACAGGCCGTCAGCGTTCCACACTaGTCATTTATTAATGTGGTTTCCATCAGCTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: KQEQKQAVSVPH*SFINVVSISSE Trigger: TTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTGGAACGCTGACGGCCTGTTTCTGCTCTTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR TCA 72 bp | CTTAGTCCCCTCTGCAGGGTTTCAGCTATAATTATCTaGTGTTGCCTTCTTGTAGGCGACTGCAGGATTTAT | + |
|
Preference number: 3 (lower is better) Translates to: LSPLCRVSAIII*CCLLVGDCRIY Trigger: ATAAATCCTGCAGTCGCCTACAAGAAGGCAACATCAGATAATTATAGCTGAAACCCTGCAGAGGGGACTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR TCA 72 bp | GTGGCACACATTTATGATTCCAGCACTTGTTGGGGCTaGGAAATCACAAGTTTGAGGTCAGCCTTTGCTATA | + |
|
Preference number: 3 (lower is better) Translates to: VAHIYDSSTCWG*EITSLRSAFAI Trigger: TATAGCAAAGGCTGACCTCAAACTTGTGATTTCTCAGCCCCAACAAGTGCTGGAATCATAAATGTGTGCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR GCA 72 bp | CTCCTACATGGCACCATCATGAAGAACTGTGGGAAATaGAGAAAGTGCTGTCTTAGAAAAGCAAGAGCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: LLHGTIMKNCGK*RKCCLRKARAE Trigger: TTCTGCTCTTGCTTTTCTAAGACAGCACTTTCTGCATTTCCCACAGTTCTTCATGATGGTGCCATGTAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTCCTGTGCTTGTGACAACTGAGCATGAGAACTGGACGAGTGAAGGGAAAGCTAAAGCTTGTATTTaGGTTCTGACGTTTCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: FLPVLVTTEHENWTSEGKAKACI*VLTFLP Trigger: AGGAAGAAACGTCAGAACCAAAATACAAGCTTTAGC...TTTCCCTTCACTCGTCCAGTTCTCATGCTCAGTTGTCACAAGCACAGGAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTCCTGTGCTTGTGACAACTGAGCATGAGAACTGGACGAGTGAAGGGAAATATAATTATCTGATGTaGCCTTCTTGTAGGCGACTG | + |
|
Preference number: 3 (lower is better) Translates to: FLPVLVTTEHENWTSEGKYNYLM*PSCRRL Trigger: CAGTCGCCTACAAGAAGGCAACATCAGATAATTATA...TTTCCCTTCACTCGTCCAGTTCTCATGCTCAGTTGTCACAAGCACAGGAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR TCA 72 bp | TGCAATATGCTTGAGAAAGACCCAAGAAAAAGGAGATaGATGAAATCAAGGCTGACGGAGAACTGTATCAGT | + |
|
Preference number: 3 (lower is better) Translates to: CNMLEKDPRKRR*MKSRLTENCIS Trigger: ACTGATACAGTTCTCCGTCAGCCTTGATTTCATTCATCTCCTTTTTCTTGGGTCTTTCTCAAGCATATTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR CCA 72 bp | GCTGAGATTCAAACTGAGCATGACGCCAAGTTAAAATaGGCTTTCCATGAACCTAATCTTAAACCCAGAAAT | + |
|
Preference number: 3 (lower is better) Translates to: AEIQTEHDAKLK*AFHEPNLKPRN Trigger: ATTTCTGGGTTTAAGATTAGGTTCATGGAAAGCCCATTTTAACTTGGCGTCATGCTCAGTTTGAATCTCAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR-3UTR CAA 90 bp | GCCATCAGTTTAGAATTTCTTAGTCCCCTCTGCAGGGTTTCAGCTATAATTATCTGCAGTAGATTCAGATaGAAAGTCTATTCTAAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: AISLEFLSPLCRVSAIIICSRFR*KVYSKL Trigger: CAGCTTAGAATAGACTTTCAATCTGAATCTACTGCA...GATAATTATAGCTGAAACCCTGCAGAGGGGACTAAGAAATTCTAAACTGATGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCAAGTTTTTCCTTTAGTTGATCTTGCTGCTCTGCTCCTGAGAACTATCAAGTATAATTTCAGCAGTTaGCATGATCCCACCAGTAAT | + |
|
Preference number: 3 (lower is better) Translates to: KQVFPLVDLAALLLRTIKYNFSS*HDPTSN Trigger: ATTACTGGTGGGATCATGCAAACTGCTGAAATTATA...CTTGATAGTTCTCAGGAGCAGAGCAGCAAGATCAACTAAAGGAAAAACTTGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR GCA 72 bp | TTGGGGCTGAGAAATCACAAGTTTGAGGTCAGCCTTTaGTATATAATGAGTTCTTATGAACAGACAAACAAG | + |
|
Preference number: 3 (lower is better) Translates to: LGLRNHKFEVSL*YIMSSYEQTNK Trigger: CTTGTTTGTCTGTTCATAAGAACTCATTATATAGCAAAGGCTGACCTCAAACTTGTGATTTCTCAGCCCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR TCA 72 bp | AGCCTCAGATATGTCTGCAGAGGACCATTCAGTGAATaGATACAGTCTATAATTATTGAAAATAGAGTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: SLRYVCRGPFSE*IQSIIIENRVQ Trigger: CTGCACTCTATTTTCAATAATTATAGACTGTATTCATTCACTGAATGGTCCTCTGCAGACATATCTGAGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR TCA 72 bp | TCTAAGCTGGTTGTGTATAAACTAATTGGCATTACATaGACTGTGATCAGGCTAAAGCTTGTATTTTGGTTC | + |
|
Preference number: 3 (lower is better) Translates to: SKLVVYKLIGIT*TVIRLKLVFWF Trigger: GAACCAAAATACAAGCTTTAGCCTGATCACAGTTCATGTAATGCCAATTAGTTTATACACAACCAGCTTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CAA 72 bp | TCAAATATGGCACCCTTCACATTGGAGCCTCTCAGGTaGGCTTCCTGGAGGTCACACCCCGACAAATCACAG | + |
|
Preference number: 4 (lower is better) Translates to: SNMAPFTLEPLR*ASWRSHPDKSQ Trigger: CTGTGATTTGTCGGGGTGTGACCTCCAGGAAGCCAACCTGAGAGGCTCCAATGTGAAGGGTGCCATATTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156700.2 |
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| CDS-3UTR GCA 90 bp | AGCTCATTCCTGGAGGGGAAGAGGGATGCAGGGTCTCACTGTTTATTCCAATCTAGCACAGCAGAGATTTaGATGTGCGAGGTTGCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SSFLEGKRDAGSHCLFQSSTAEI*MCEVAA Trigger: CGCTGCAACCTCGCACATGCAAATCTCTGCTGTGCT...AGATTGGAATAAACAGTGAGACCCTGCATCCCTCTTCCCCTCCAGGAATGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| 3UTR CAA 72 bp | CCTCAAGCCGACCAGCCTGTAGGATTTAGAACCCATTaGGACACAGCTTCTTCCCTGCTTTTGGGCAACAAA | + |
|
Preference number: 4 (lower is better) Translates to: PQADQPVGFRTH*DTASSLLLGNK Trigger: TTTGTTGCCCAAAAGCAGGGAAGAAGCTGTGTCCAAATGGGTTCTAAATCCTACAGGCTGGTCGGCTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CAA 72 bp | TCCCCTCTGCAGGGTTTCAGCTATAATTATCTGATGTaGCCTTCTTGTAGGCGACTGCAGGATTTATTCATA | + |
|
Preference number: 4 (lower is better) Translates to: SPLQGFSYNYLM*PSCRRLQDLFI Trigger: TATGAATAAATCCTGCAGTCGCCTACAAGAAGGCAACATCAGATAATTATAGCTGAAACCCTGCAGAGGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| 3UTR CAA 72 bp | AGGATTTATTCATACTCCACCTGCAGTAGATTCAGATaGAAAGTCTATTCTAAGCTGGTTGTGTATAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: RIYSYSTCSRFR*KVYSKLVVYKL Trigger: TAGTTTATACACAACCAGCTTAGAATAGACTTTCAATCTGAATCTACTGCAGGTGGAGTATGAATAAATCCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078053.13 ENSMUST00000156700.2 |
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| CDS-3UTR CAA 90 bp | CACACTGGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCCAGCGCAGCTCTGACTaGGTTGGAGTGGCCAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: HTGHLLMWFPSALNPAVPQRSSD*VGVASR Trigger: TCTGCTGGCCACTCCAACCAAGTCAGAGCTGCGCTG...GGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| CDS-3UTR CAA 90 bp | CACACTGGTCATTTATTAATGTGGTTTCCATCAGCTCTGAACCCCGCAGTTCCCTTGGAGCCTCTCAGGTaGGCTTCCTGGAGGTCACAC | + |
|
Preference number: 5 (lower is better) Translates to: HTGHLLMWFPSALNPAVPLEPLR*ASWRSH Trigger: GTGTGACCTCCAGGAAGCCAACCTGAGAGGCTCCAA...GGGAACTGCGGGGTTCAGAGCTGATGGAAACCACATTAATAAATGACCAGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| CDS-3UTR CAA 90 bp | TTTGAGGTCAGCCTTTGCTATATAATGAGTTCTTATGAACAGACAAACAAGCTACAGCGCAGCTCTGACTaGGTTGGAGTGGCCAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: FEVSLCYIMSSYEQTNKLQRSSD*VGVASR Trigger: TCTGCTGGCCACTCCAACCAAGTCAGAGCTGCGCTG...TAGCTTGTTTGTCTGTTCATAAGAACTCATTATATAGCAAAGGCTGACCTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152243.8 |
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| CDS CAA 72 bp | CCCTGGAGATTTGCACACTGGCAGCGCAGCTCTGACTaGGTTGGAGTGGCCAGCAGAAATCGAACAAATTCC | + |
|
Preference number: 6 (lower is better) Translates to: PWRFAHWQRSSD*VGVASRNRTNS Trigger: GGAATTTGTTCGATTTCTGCTGGCCACTCCAACCAAGTCAGAGCTGCGCTGCCAGTGTGCAAATCTCCAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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| CDS CCA 72 bp | CCTGGAGATTTGCACACTGGCAGCGCAGCTCTGACTTaGTTGGAGTGGCCAGCAGAAATCGAACAAATTCCT | + |
|
Preference number: 6 (lower is better) Translates to: PGDLHTGSAALT*LEWPAEIEQIP Trigger: AGGAATTTGTTCGATTTCTGCTGGCCACTCCAACCAAGTCAGAGCTGCGCTGCCAGTGTGCAAATCTCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078053.13 |
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