Pregenerated sensors for KCTD6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021752Ensembl transcript IDs: ENSMUST00000022272.14, ENSMUST00000170111.3
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCACAAAACTTCCTTCTaGTCCTCAATGCCTTCAAAT | + |
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Preference number: 2 (lower is better) Translates to: LETRNRHMHTWEQNREETHKTSF*SSMPSN Trigger: ATTTGAAGGCATTGAGGACCAGAAGGAAGTTTTGTG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| 3UTR-3UTR GCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCCTTCTGGTCCTCAATaGCTTCAAATAAATACAAAG | + |
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Preference number: 2 (lower is better) Translates to: LETRNRHMHTWEQNREETPSGPQ*LQINTK Trigger: CTTTGTATTTATTTGAAGGCATTGAGGACCAGAAGG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| 3UTR TCA 72 bp | AAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTaGGCTTGCAGGAAGTTCTCTGAGGGCTGGCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: KTQQQSLPCPKT*ACRKFSEGWPA Trigger: TGCTGGCCAGCCCTCAGAGAACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| 3UTR TCA 72 bp | AACTGTAGAAAGCAGTCCTTAACAAGTACCCTCAGATaGCTGGGCCAGTCTTCCTTTAACACCACAATACTG | + |
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Preference number: 3 (lower is better) Translates to: NCRKQSLTSTLR*LGQSSFNTTIL Trigger: CAGTATTGTGGTGTTAAAGGAAGACTGGCCCAGTCATCTGAGGGTACTTGTTAAGGACTGCTTTCTACAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCGCACGGTCCAAAGGTaGAGGAGACCTGGCAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETRTVQR*RRPGSL Trigger: GAGACTGCCAGGTCTCCTTCACCTTTGGACCGTGCG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTCGCACGGTCCAAAGGTaGAGGAGACCTGGCAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LKPNNSLFHVPKRELAGSRTVQR*RRPGSL Trigger: GAGACTGCCAGGTCTCCTTCACCTTTGGACCGTGCG...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTGAGGCCTGGGGTCATTaGGACACTGAATCAAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETEAWGH*DTESRV Trigger: AACCCTTGATTCAGTGTCTCAATGACCCCAGGCCTC...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTGTGGTGATGGTTAACTaGGTGATGATGACGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETVVMVN*VMMTAT Trigger: GGTGGCCGTCATCATCACCCAGTTAACCATCACCAC...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTAAGGTGAAGGAGACCTaGCAGTCTCTGGTGTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETKVKET*QSLVSI Trigger: GATGGACACCAGAGACTGCCAGGTCTCCTTCACCTT...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTGGGTCATTGAGACACTaGATCAAGGGTTCGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETGSLRH*IKGSIW Trigger: CCAGATCGAACCCTTGATTCAGTGTCTCAATGACCC...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTATGTACTCCATCAGATaGACCCGGAGAGAGACTTCC | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETMYSIR*TRRETS Trigger: GGAAGTCTCTCTCCGGGTCCATCTGATGGAGTACAT...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTGTCCGTCTCGATCAATaGAGTAATTGCCTTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETVRLDQ*SNCLEG Trigger: ACCCTCAAGGCAATTACTTCATTGATCGAGACGGAC...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR GCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCGGATCGTGAAACCTTaGTTCGTGATGTACTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETRIVKP*FVMYSI Trigger: GATGGAGTACATCACGAAGCAAGGTTTCACGATCCG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCCTTCGAGTAAGGAGTaGACCTTTGTGGTGATGGTT | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETPSSKE*TFVVMV Trigger: AACCATCACCACAAAGGTCCACTCCTTACTCGAAGG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTAGACCTGGCAGTCTCTaGTGTCCATCATGTGCTTAT | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETRPGSL*CPSCAY Trigger: ATAAGCACATGATGGACACCAGAGACTGCCAGGTCT...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTAAGGTGAAGGAGACCTaGCAGTCTCTGGTGTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LKPNNSLFHVPKRELAGSKVKET*QSLVSI Trigger: GATGGACACCAGAGACTGCCAGGTCTCCTTCACCTT...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTGGGTCATTGAGACACTaGATCAAGGGTTCGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: LKPNNSLFHVPKRELAGSGSLRH*IKGSIW Trigger: CCAGATCGAACCCTTGATTCAGTGTCTCAATGACCC...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CCA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTATGTACTCCATCAGATaGACCCGGAGAGAGACTTCC | + |
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Preference number: 4 (lower is better) Translates to: LKPNNSLFHVPKRELAGSMYSIR*TRRETS Trigger: GGAAGTCTCTCTCCGGGTCCATCTGATGGAGTACAT...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR GCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCTGGTGTCCATCATGTaGTTATTCCACTTGGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETLVSIM*LFHLVK Trigger: TTTCACCAAGTGGAATAAGCACATGATGGACACCAG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR TCA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTCACCTACATTTAATGTaGCTGGGTCACTCATCATAT | + |
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Preference number: 4 (lower is better) Translates to: LETRNRHMHTWEQNREETHLHLM*LGHSSY Trigger: ATATGATGAGTGACCCAGTCACATTAAATGTAGGTG...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR GCA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTCTGGTGTCCATCATGTaGTTATTCCACTTGGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LKPNNSLFHVPKRELAGSLVSIM*LFHLVK Trigger: TTTCACCAAGTGGAATAAGCACATGATGGACACCAG...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR GCA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTCAGAAAGTCCAGTTGTaGTCTACTGTGTTCTCATTG | + |
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Preference number: 4 (lower is better) Translates to: LKPNNSLFHVPKRELAGSQKVQL*STVFSL Trigger: CAATGAGAACACAGTAGAGCACAACTGGACTTTCTG...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS TCA 90 bp | GTCCAGTTGTGCTCTACTGTGTTCTCATTGGCCCGCTCGCTCATGTaGTGCACCCGAGTATTGCGGATCGTGAAACCTTGCTTCGTGATG | + |
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Preference number: 5 (lower is better) Translates to: VQLCSTVFSLARSLM*CTRVLRIVKPCFVM Trigger: CATCACGAAGCAAGGTTTCACGATCCGCAATACTCGGGTGCATCACATGAGCGAGCGGGCCAATGAGAACACAGTAGAGCACAACTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CAA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTAATGAAGTAATTGCCTaGAGGGTCTCGGGCTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LETRNRHMHTWEQNREETNEVIA*RVSGCG Trigger: CCCACAGCCCGAGACCCTCAAGGCAATTACTTCATT...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CAA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTAATGAAGTAATTGCCTaGAGGGTCTCGGGCTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LKPNNSLFHVPKRELAGSNEVIA*RVSGCG Trigger: CCCACAGCCCGAGACCCTCAAGGCAATTACTTCATT...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CCA 90 bp | GAGATGCCTTCGAGTAAGGAGTGGACCTTTGTGGTGATGGTTAACTaGGTGATGATGACGGCCACCGGATTGGAATATTTAGAAAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: EMPSSKEWTFVVMVN*VMMTATGLEYLESF Trigger: GAAGCTTTCTAAATATTCCAATCCGGTGGCCGTCATCATCACCCAGTTAACCATCACCACAAAGGTCCACTCCTTACTCGAAGGCATCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CAA 90 bp | CTAGAGACTCGGAACAGGCACATGCATACTTGGGAACAAAACAGGGAGGAGACTATGACGGCCACCGGATaGGAATATTTAGAAAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LETRNRHMHTWEQNREETMTATG*EYLESF Trigger: GAAGCTTTCTAAATATTCCAATCCGGTGGCCGTCAT...AGTCTCCTCCCTGTTTTGTTCCCAAGTATGCATGTGCCTGTTCCGAGTCTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CAA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTGCGGATCGTGAAACCTaGCTTCGTGATGTACTCCAT | + |
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Preference number: 5 (lower is better) Translates to: LKPNNSLFHVPKRELAGSADRET*LRDVLH Trigger: ATGGAGTACATCACGAAGCAAGGTTTCACGATCCGC...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS-3UTR CAA 90 bp | CTAAAACCCAACAACAGTCTCTTCCATGTCCCAAAACGTGAGCTTGCAGGAAGTATGACGGCCACCGGATaGGAATATTTAGAAAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LKPNNSLFHVPKRELAGSMTATG*EYLESF Trigger: GAAGCTTTCTAAATATTCCAATCCGGTGGCCGTCAT...ACTTCCTGCAAGCTCACGTTTTGGGACATGGAAGAGACTGTTGTTGGGTTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CAA 90 bp | GACATAGCGGAAGAGCGGTCCGTCTCGATCAATGAAGTAATTGCCTaGAGGGTCTCGGGCTGTGGGGAAGTCACCCCCAAACATAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: DIAEERSVSINEVIA*RVSGCGEVTPKHSS Trigger: GGAGCTATGTTTGGGGGTGACTTCCCCACAGCCCGAGACCCTCAAGGCAATTACTTCATTGATCGAGACGGACCGCTCTTCCGCTATGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CAA 72 bp | GAAGAGCGGTCCGTCTCGATCAATGAAGTAATTGCCTaGAGGGTCTCGGGCTGTGGGGAAGTCACCCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: EERSVSINEVIA*RVSGCGEVTPK Trigger: TTTGGGGGTGACTTCCCCACAGCCCGAGACCCTCAAGGCAATTACTTCATTGATCGAGACGGACCGCTCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CAA 90 bp | CCGCTCGCTCATGTGATGCACCCGAGTATTGCGGATCGTGAAACCTaGCTTCGTGATGTACTCCATCAGATGGACCCGGAGAGAGACTTC | + |
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Preference number: 6 (lower is better) Translates to: PLAHVMHPSIADRET*LRDVLHQMDPERDF Trigger: GAAGTCTCTCTCCGGGTCCATCTGATGGAGTACATCACGAAGCAAGGTTTCACGATCCGCAATACTCGGGTGCATCACATGAGCGAGCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS TCA 72 bp | TGCTCTACTGTGTTCTCATTGGCCCGCTCGCTCATGTaGTGCACCCGAGTATTGCGGATCGTGAAACCTTGC | + |
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Preference number: 6 (lower is better) Translates to: CSTVFSLARSLM*CTRVLRIVKPC Trigger: GCAAGGTTTCACGATCCGCAATACTCGGGTGCATCACATGAGCGAGCGGGCCAATGAGAACACAGTAGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CAA 72 bp | CATGTGATGCACCCGAGTATTGCGGATCGTGAAACCTaGCTTCGTGATGTACTCCATCAGATGGACCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: HVMHPSIADRET*LRDVLHQMDPE Trigger: CTCCGGGTCCATCTGATGGAGTACATCACGAAGCAAGGTTTCACGATCCGCAATACTCGGGTGCATCACATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CAA 72 bp | GTGATGGTTAACTGGGTGATGATGACGGCCACCGGATaGGAATATTTAGAAAGCTTCCGAGTGCTAGACAGC | + |
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Preference number: 6 (lower is better) Translates to: VMVNWVMMTATG*EYLESFRVLDS Trigger: GCTGTCTAGCACTCGGAAGCTTTCTAAATATTCCAATCCGGTGGCCGTCATCATCACCCAGTTAACCATCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CAA 90 bp | ACCTTTGTGGTGATGGTTAACTGGGTGATGATGACGGCCACCGGATaGGAATATTTAGAAAGCTTCCGAGTGCTAGACAGCTCTACGACT | + |
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Preference number: 6 (lower is better) Translates to: TFVVMVNWVMMTATG*EYLESFRVLDSSTT Trigger: AGTCGTAGAGCTGTCTAGCACTCGGAAGCTTTCTAAATATTCCAATCCGGTGGCCGTCATCATCACCCAGTTAACCATCACCACAAAGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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| CDS CCA 72 bp | TCGAGTAAGGAGTGGACCTTTGTGGTGATGGTTAACTaGGTGATGATGACGGCCACCGGATTGGAATATTTA | + |
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Preference number: 6 (lower is better) Translates to: SSKEWTFVVMVN*VMMTATGLEYL Trigger: TAAATATTCCAATCCGGTGGCCGTCATCATCACCCAGTTAACCATCACCACAAAGGTCCACTCCTTACTCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022272.14 ENSMUST00000170111.3 |
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